Warning: Permanently added '98.80.246.235' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10926705-epel-10-x86_64 --chroot epel-10-x86_64


Version: 1.9
PID: 9840
Logging PID: 9842
Task:
{'allow_user_ssh': False,
 'appstream': True,
 'background': False,
 'build_id': 10926705,
 'buildroot_pkgs': [],
 'chroot': 'epel-10-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '1557d4b671a062a59480b2aa41114b37aa40a59f',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tomasm/EL10-plus/pymol',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'pymol',
 'package_version': '3.1.0-17.TMM',
 'project_dirname': 'EL10-plus',
 'project_name': 'EL10-plus',
 'project_owner': 'tomasm',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tomasm/EL10-plus/epel-10-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None,
            'repo_gpgcheck': False}],
 'sandbox': 'tomasm/EL10-plus--tomasm',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 1,
 'submitter': 'tomasm',
 'tags': [],
 'task_id': '10926705-epel-10-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tomasm/EL10-plus/pymol /var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tomasm/EL10-plus/pymol', '/var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol'...

Running: git checkout 1557d4b671a062a59480b2aa41114b37aa40a59f --

cmd: ['git', 'checkout', '1557d4b671a062a59480b2aa41114b37aa40a59f', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol
rc: 0
stdout: 
stderr: Note: switching to '1557d4b671a062a59480b2aa41114b37aa40a59f'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 1557d4b automatic import of pymol

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pymol-open-source-3.1.0.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o pymol-open-source-3.1.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tomasm/EL10-plus/pymol/pymol-open-source-3.1.0.tar.gz/md5/459f483231e1d521824b0e74df5ba640/pymol-open-source-3.1.0.tar.gz
  % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
                                 Dload  Upload  Total   Spent   Left   Speed
100 28.18M 100 28.18M   0      0 468.6M      0                              0
INFO: Reading stdout from command: md5sum pymol-open-source-3.1.0.tar.gz
INFO: Downloading pymol.png
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o pymol.png --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tomasm/EL10-plus/pymol/pymol.png/md5/3bbd85dbd40f588f505ad988b6df2933/pymol.png
  % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
                                 Dload  Upload  Total   Spent   Left   Speed
100  19466 100  19466   0      0  1.81M      0                              0
INFO: Reading stdout from command: md5sum pymol.png

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1788221599.074749 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.8 starting (python version = 3.14.5, NVR = mock-6.8-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1788221599.074749 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol/pymol.spec)  Config(centos-stream+epel-10-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.8
INFO: Mock Version: 6.8
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/centos-stream+epel-10-x86_64-bootstrap-1788221599.074749/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: quay.io/centos/centos:stream10
INFO: Pulling image: quay.io/centos/centos:stream10
INFO: Tagging container image as mock-bootstrap-fed9aee2-152b-43d9-aa0e-d606010aa987
INFO: Checking that 5c2abbacec460f8839286212b2541a34a493d3b0009e5e38fa27284ddcf44166 image matches host's architecture
INFO: Copy content of container 5c2abbacec460f8839286212b2541a34a493d3b0009e5e38fa27284ddcf44166 to /var/lib/mock/centos-stream+epel-10-x86_64-bootstrap-1788221599.074749/root
INFO: mounting 5c2abbacec460f8839286212b2541a34a493d3b0009e5e38fa27284ddcf44166 with podman image mount
INFO: image 5c2abbacec460f8839286212b2541a34a493d3b0009e5e38fa27284ddcf44166 as /var/lib/containers/storage/overlay/b06ef601f5caf6cc057427200b2d4c0bf3bacb1947a477ff9f30559fefa09fd0/merged
INFO: umounting image 5c2abbacec460f8839286212b2541a34a493d3b0009e5e38fa27284ddcf44166 (/var/lib/containers/storage/overlay/b06ef601f5caf6cc057427200b2d4c0bf3bacb1947a477ff9f30559fefa09fd0/merged) with podman image umount
INFO: Removing image mock-bootstrap-fed9aee2-152b-43d9-aa0e-d606010aa987
INFO: Package manager dnf4 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf4 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-25.el10.x86_64
  rpm-sequoia-1.10.2.3-1.el10.x86_64
  python3-dnf-4.20.0-27.el10.noarch
  python3-dnf-plugins-core-4.7.0-12.el10.noarch
  yum-4.20.0-27.el10.noarch
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  11 kB/s | 7.2 kB     00:00    
CentOS Stream 10 - BaseOS                        26 MB/s | 6.8 MB     00:00    
CentOS Stream 10 - AppStream                    3.1 MB/s | 3.3 MB     00:01    
CentOS Stream 10 - CRB                          522 kB/s | 771 kB     00:01    
CentOS Stream 10 - Extras packages               25 kB/s |  11 kB     00:00    
Extra Packages for Enterprise Linux 10 - x86_64  18 MB/s | 7.1 MB     00:00    
Dependencies resolved.
================================================================================
 Package                     Arch   Version                     Repo       Size
================================================================================
Installing:
 bash                        x86_64 5.2.26-6.el10               baseos    1.8 M
 bzip2                       x86_64 1.0.8-25.el10               baseos     54 k
 centos-stream-release       noarch 10.0-23.el10                baseos     29 k
 coreutils                   x86_64 9.5-13.el10                 baseos    1.1 M
 cpio                        x86_64 2.15-3.el10                 baseos    292 k
 diffutils                   x86_64 3.10-8.el10                 baseos    409 k
 epel-rpm-macros             noarch 10-7.el10_3                 epel      8.4 k
 findutils                   x86_64 1:4.10.0-5.el10             baseos    551 k
 gawk                        x86_64 5.3.0-7.el10                baseos    1.1 M
 glibc-minimal-langpack      x86_64 2.39-137.el10               baseos     24 k
 grep                        x86_64 3.11-10.el10                baseos    301 k
 gzip                        x86_64 1.13-4.el10                 baseos    169 k
 info                        x86_64 7.1-6.el10                  baseos    183 k
 patch                       x86_64 2.7.6-26.el10               appstream 132 k
 redhat-rpm-config           noarch 296-1.el10                  appstream  73 k
 rpm-build                   x86_64 4.19.1.1-25.el10            appstream  76 k
 sed                         x86_64 4.9-5.el10                  baseos    318 k
 shadow-utils                x86_64 2:4.15.0-13.el10            baseos    1.3 M
 tar                         x86_64 2:1.35-13.el10              baseos    867 k
 unzip                       x86_64 6.0-69.el10                 baseos    190 k
 util-linux                  x86_64 2.40.2-20.el10              baseos    1.3 M
 which                       x86_64 2.21-44.el10                baseos     42 k
 xz                          x86_64 1:5.6.2-5.el10              baseos    480 k
Installing dependencies:
 R-srpm-macros               noarch 1.3.7-2.el10_3              epel       11 k
 alternatives                x86_64 1.30-2.el10                 baseos     42 k
 ansible-srpm-macros         noarch 1-21.el10_3                 epel       20 k
 audit-libs                  x86_64 4.2.1-3.el10                baseos    141 k
 authselect                  x86_64 1.5.3-1.el10                baseos    230 k
 authselect-libs             x86_64 1.5.3-1.el10                baseos    268 k
 basesystem                  noarch 11-22.el10                  baseos    4.3 k
 binutils                    x86_64 2.41-65.el10                baseos    6.4 M
 binutils-gold               x86_64 2.41-65.el10                baseos    795 k
 bzip2-libs                  x86_64 1.0.8-25.el10               baseos     42 k
 ca-certificates             noarch 2026.2.90_v9.0.316-100.0.el10
                                                                baseos    1.1 M
 centos-gpg-keys             noarch 10.0-23.el10                baseos     26 k
 centos-stream-repos         noarch 10.0-23.el10                baseos     11 k
 coreutils-common            x86_64 9.5-13.el10                 baseos    2.1 M
 cracklib                    x86_64 2.9.11-8.el10               baseos     96 k
 cracklib-dicts              x86_64 2.9.11-8.el10               baseos    3.6 M
 crypto-policies             noarch 20260811-1.git4dcd294.el10  baseos     95 k
 curl                        x86_64 8.12.1-6.el10               baseos    216 k
 cyrus-sasl-lib              x86_64 2.1.28-27.el10              baseos    106 k
 debugedit                   x86_64 5.3-2.el10                  appstream  87 k
 dwz                         x86_64 0.16-1.el10                 appstream 140 k
 ed                          x86_64 1.20-5.el10                 baseos     83 k
 efi-srpm-macros             noarch 6-8.el10                    appstream  23 k
 elfutils                    x86_64 0.195-1.el10                baseos    578 k
 elfutils-debuginfod-client  x86_64 0.195-1.el10                baseos     44 k
 elfutils-default-yama-scope noarch 0.195-1.el10                baseos    8.6 k
 elfutils-libelf             x86_64 0.195-1.el10                baseos    205 k
 elfutils-libs               x86_64 0.195-1.el10                baseos    268 k
 file                        x86_64 5.45-12.el10                baseos     48 k
 file-libs                   x86_64 5.45-12.el10                baseos    763 k
 filesystem                  x86_64 3.18-17.el10                baseos    4.8 M
 fonts-srpm-macros           noarch 1:2.0.5-18.el10             appstream  27 k
 forge-srpm-macros           noarch 0.4.0-6.el10                appstream  21 k
 fpc-srpm-macros             noarch 1.3-7.el10_1                epel      7.8 k
 gdb-minimal                 x86_64 17.2-3.el10                 appstream 4.5 M
 gdbm                        x86_64 1:1.23-14.el10              baseos    151 k
 gdbm-libs                   x86_64 1:1.23-14.el10              baseos     57 k
 ghc-srpm-macros             noarch 1.9.2-1.el10_0              epel      9.1 k
 glibc                       x86_64 2.39-137.el10               baseos    2.1 M
 glibc-common                x86_64 2.39-137.el10               baseos    318 k
 glibc-gconv-extra           x86_64 2.39-137.el10               baseos    1.7 M
 gmp                         x86_64 1:6.2.1-12.el10             baseos    318 k
 go-srpm-macros              noarch 3.8.0-1.el10                appstream  27 k
 jansson                     x86_64 2.14-3.el10                 baseos     46 k
 json-c                      x86_64 0.18-3.el10                 baseos     45 k
 kernel-srpm-macros          noarch 1.0-29.el10                 appstream 8.7 k
 keyutils-libs               x86_64 1.6.3-5.el10                baseos     33 k
 krb5-libs                   x86_64 1.21.3-11.el10              baseos    766 k
 libacl                      x86_64 2.4.0-2.el10                baseos     25 k
 libarchive                  x86_64 3.7.7-11.el10               baseos    414 k
 libattr                     x86_64 2.6.0-2.el10                baseos     18 k
 libblkid                    x86_64 2.40.2-20.el10              baseos    124 k
 libbrotli                   x86_64 1.1.0-8.el10                baseos    344 k
 libcap                      x86_64 2.69-7.el10                 baseos     91 k
 libcap-ng                   x86_64 0.9.3-2.el10                baseos     33 k
 libcbor                     x86_64 0.11.0-3.el10               baseos     34 k
 libcom_err                  x86_64 1.47.1-5.el10               baseos     26 k
 libcurl                     x86_64 8.12.1-6.el10               baseos    368 k
 libeconf                    x86_64 0.6.2-4.el10                baseos     33 k
 libevent                    x86_64 2.1.12-16.el10              baseos    261 k
 libfdisk                    x86_64 2.40.2-20.el10              baseos    160 k
 libffi                      x86_64 3.4.4-10.el10               baseos     41 k
 libfido2                    x86_64 1.14.0-7.el10               baseos     98 k
 libgcc                      x86_64 14.4.1-3.el10               baseos    130 k
 libgomp                     x86_64 14.4.1-3.el10               baseos    353 k
 libidn2                     x86_64 2.3.7-3.el10                baseos    118 k
 libmount                    x86_64 2.40.2-20.el10              baseos    154 k
 libnghttp2                  x86_64 1.68.0-6.el10               baseos     73 k
 libpkgconf                  x86_64 2.1.0-3.el10                baseos     39 k
 libpsl                      x86_64 0.21.5-6.el10               baseos     65 k
 libpwquality                x86_64 1.4.5-13.el10               baseos    121 k
 libselinux                  x86_64 3.11-2.el10                 baseos     99 k
 libsemanage                 x86_64 3.11-1.el10                 baseos    122 k
 libsepol                    x86_64 3.11-2.el10                 baseos    349 k
 libsmartcols                x86_64 2.40.2-20.el10              baseos     82 k
 libssh                      x86_64 0.12.2-2.el10               baseos    279 k
 libssh-config               noarch 0.12.2-2.el10               baseos    8.4 k
 libstdc++                   x86_64 14.4.1-3.el10               baseos    913 k
 libtasn1                    x86_64 4.20.0-5.el10               baseos     74 k
 libunistring                x86_64 1.1-10.el10                 baseos    548 k
 libutempter                 x86_64 1.2.1-15.el10               baseos     27 k
 libuuid                     x86_64 2.40.2-20.el10              baseos     28 k
 libverto                    x86_64 0.3.2-10.el10               baseos     22 k
 libxcrypt                   x86_64 4.4.36-10.el10              baseos    120 k
 libxml2                     x86_64 2.12.5-15.el10              baseos    691 k
 libzstd                     x86_64 1.5.5-9.el10                baseos    292 k
 lua-libs                    x86_64 5.4.8-1.el10                baseos    131 k
 lua-srpm-macros             noarch 1-15.el10                   appstream 9.8 k
 lz4-libs                    x86_64 1.9.4-8.el10                baseos     68 k
 mpfr                        x86_64 4.2.1-8.el10                baseos    346 k
 ncurses-base                noarch 6.4-15.20240127.el10        baseos     98 k
 ncurses-libs                x86_64 6.4-15.20240127.el10        baseos    337 k
 ocaml-srpm-macros           noarch 10-4.el10                   appstream  10 k
 openblas-srpm-macros        noarch 2-19.el10                   appstream 8.7 k
 openldap                    x86_64 2.6.13-1.el10               baseos    240 k
 openssl-fips-provider       x86_64 1:3.5.7-3.el10              baseos    813 k
 openssl-libs                x86_64 1:3.5.7-3.el10              baseos    2.3 M
 p11-kit                     x86_64 0.26.4-1.el10               baseos    563 k
 p11-kit-trust               x86_64 0.26.4-1.el10               baseos    140 k
 package-notes-srpm-macros   noarch 0.5-13.el10                 appstream  10 k
 pam                         x86_64 1.6.1-11.el10               baseos    585 k
 pam-libs                    x86_64 1.6.1-11.el10               baseos     55 k
 pcre2                       x86_64 10.44-1.el10.3              baseos    248 k
 pcre2-syntax                noarch 10.44-1.el10.3              baseos    151 k
 perl-srpm-macros            noarch 1-57.el10                   appstream 9.5 k
 pkgconf                     x86_64 2.1.0-3.el10                baseos     45 k
 pkgconf-m4                  noarch 2.1.0-3.el10                baseos     15 k
 pkgconf-pkg-config          x86_64 2.1.0-3.el10                baseos     11 k
 popt                        x86_64 1.19-8.el10                 baseos     66 k
 publicsuffix-list-dafsa     noarch 20240107-5.el10             baseos     59 k
 pyproject-srpm-macros       noarch 1.23.2-1.el10               appstream  15 k
 python-srpm-macros          noarch 3.12-11.el10                appstream  22 k
 qt6-srpm-macros             noarch 6.10.1-1.el10               appstream 9.1 k
 readline                    x86_64 8.2-11.el10                 baseos    214 k
 rpm                         x86_64 4.19.1.1-25.el10            baseos    560 k
 rpm-build-libs              x86_64 4.19.1.1-25.el10            baseos     92 k
 rpm-libs                    x86_64 4.19.1.1-25.el10            baseos    311 k
 rpm-sequoia                 x86_64 1.10.2.3-1.el10             baseos    974 k
 rust-toolset-srpm-macros    noarch 1.97.1-4.el10               appstream  10 k
 setup                       noarch 2.14.5-7.el10               baseos    153 k
 sqlite-libs                 x86_64 3.46.1-6.el10               baseos    744 k
 systemd-libs                x86_64 257-33.el10                 baseos    854 k
 util-linux-core             x86_64 2.40.2-20.el10              baseos    550 k
 xz-libs                     x86_64 1:5.6.2-5.el10              baseos    111 k
 zip                         x86_64 3.0-45.el10                 baseos    270 k
 zlib-ng-compat              x86_64 2.2.3-3.el10                baseos     76 k
 zstd                        x86_64 1.5.5-9.el10                baseos    464 k

Transaction Summary
================================================================================
Install  150 Packages

Total download size: 61 M
Installed size: 189 M
Downloading Packages:
(1/150): alternatives-1.30-2.el10.x86_64.rpm    690 kB/s |  42 kB     00:00    
(2/150): audit-libs-4.2.1-3.el10.x86_64.rpm     1.5 MB/s | 141 kB     00:00    
(3/150): basesystem-11-22.el10.noarch.rpm       305 kB/s | 4.3 kB     00:00    
(4/150): authselect-1.5.3-1.el10.x86_64.rpm     2.1 MB/s | 230 kB     00:00    
(5/150): authselect-libs-1.5.3-1.el10.x86_64.rp 4.4 MB/s | 268 kB     00:00    
(6/150): binutils-gold-2.41-65.el10.x86_64.rpm   18 MB/s | 795 kB     00:00    
(7/150): bzip2-1.0.8-25.el10.x86_64.rpm         3.9 MB/s |  54 kB     00:00    
(8/150): bzip2-libs-1.0.8-25.el10.x86_64.rpm    3.0 MB/s |  42 kB     00:00    
(9/150): bash-5.2.26-6.el10.x86_64.rpm           21 MB/s | 1.8 MB     00:00    
(10/150): binutils-2.41-65.el10.x86_64.rpm       63 MB/s | 6.4 MB     00:00    
(11/150): centos-gpg-keys-10.0-23.el10.noarch.r 1.8 MB/s |  26 kB     00:00    
(12/150): ca-certificates-2026.2.90_v9.0.316-10  43 MB/s | 1.1 MB     00:00    
(13/150): centos-stream-release-10.0-23.el10.no 2.0 MB/s |  29 kB     00:00    
(14/150): centos-stream-repos-10.0-23.el10.noar 806 kB/s |  11 kB     00:00    
(15/150): cpio-2.15-3.el10.x86_64.rpm            19 MB/s | 292 kB     00:00    
(16/150): coreutils-9.5-13.el10.x86_64.rpm       48 MB/s | 1.1 MB     00:00    
(17/150): coreutils-common-9.5-13.el10.x86_64.r  70 MB/s | 2.1 MB     00:00    
(18/150): cracklib-2.9.11-8.el10.x86_64.rpm     6.0 MB/s |  96 kB     00:00    
(19/150): crypto-policies-20260811-1.git4dcd294 6.5 MB/s |  95 kB     00:00    
(20/150): curl-8.12.1-6.el10.x86_64.rpm          14 MB/s | 216 kB     00:00    
(21/150): cracklib-dicts-2.9.11-8.el10.x86_64.r  90 MB/s | 3.6 MB     00:00    
(22/150): cyrus-sasl-lib-2.1.28-27.el10.x86_64. 7.3 MB/s | 106 kB     00:00    
(23/150): diffutils-3.10-8.el10.x86_64.rpm       27 MB/s | 409 kB     00:00    
(24/150): ed-1.20-5.el10.x86_64.rpm             5.8 MB/s |  83 kB     00:00    
(25/150): elfutils-0.195-1.el10.x86_64.rpm       36 MB/s | 578 kB     00:00    
(26/150): elfutils-debuginfod-client-0.195-1.el 2.9 MB/s |  44 kB     00:00    
(27/150): elfutils-default-yama-scope-0.195-1.e 627 kB/s | 8.6 kB     00:00    
(28/150): elfutils-libelf-0.195-1.el10.x86_64.r  14 MB/s | 205 kB     00:00    
(29/150): elfutils-libs-0.195-1.el10.x86_64.rpm  17 MB/s | 268 kB     00:00    
(30/150): file-5.45-12.el10.x86_64.rpm          3.4 MB/s |  48 kB     00:00    
(31/150): file-libs-5.45-12.el10.x86_64.rpm      44 MB/s | 763 kB     00:00    
(32/150): findutils-4.10.0-5.el10.x86_64.rpm     36 MB/s | 551 kB     00:00    
(33/150): filesystem-3.18-17.el10.x86_64.rpm    126 MB/s | 4.8 MB     00:00    
(34/150): gawk-5.3.0-7.el10.x86_64.rpm           47 MB/s | 1.1 MB     00:00    
(35/150): gdbm-1.23-14.el10.x86_64.rpm          9.9 MB/s | 151 kB     00:00    
(36/150): gdbm-libs-1.23-14.el10.x86_64.rpm     3.8 MB/s |  57 kB     00:00    
(37/150): glibc-common-2.39-137.el10.x86_64.rpm  21 MB/s | 318 kB     00:00    
(38/150): glibc-2.39-137.el10.x86_64.rpm        105 MB/s | 2.1 MB     00:00    
(39/150): glibc-minimal-langpack-2.39-137.el10. 1.6 MB/s |  24 kB     00:00    
(40/150): glibc-gconv-extra-2.39-137.el10.x86_6  90 MB/s | 1.7 MB     00:00    
(41/150): gmp-6.2.1-12.el10.x86_64.rpm           21 MB/s | 318 kB     00:00    
(42/150): grep-3.11-10.el10.x86_64.rpm           20 MB/s | 301 kB     00:00    
(43/150): gzip-1.13-4.el10.x86_64.rpm            11 MB/s | 169 kB     00:00    
(44/150): info-7.1-6.el10.x86_64.rpm             13 MB/s | 183 kB     00:00    
(45/150): jansson-2.14-3.el10.x86_64.rpm        3.2 MB/s |  46 kB     00:00    
(46/150): json-c-0.18-3.el10.x86_64.rpm         3.1 MB/s |  45 kB     00:00    
(47/150): keyutils-libs-1.6.3-5.el10.x86_64.rpm 2.3 MB/s |  33 kB     00:00    
(48/150): libacl-2.4.0-2.el10.x86_64.rpm        1.7 MB/s |  25 kB     00:00    
(49/150): krb5-libs-1.21.3-11.el10.x86_64.rpm    45 MB/s | 766 kB     00:00    
(50/150): libarchive-3.7.7-11.el10.x86_64.rpm    27 MB/s | 414 kB     00:00    
(51/150): libattr-2.6.0-2.el10.x86_64.rpm       1.2 MB/s |  18 kB     00:00    
(52/150): libblkid-2.40.2-20.el10.x86_64.rpm    8.5 MB/s | 124 kB     00:00    
(53/150): libbrotli-1.1.0-8.el10.x86_64.rpm      24 MB/s | 344 kB     00:00    
(54/150): libcap-2.69-7.el10.x86_64.rpm         6.1 MB/s |  91 kB     00:00    
(55/150): libcbor-0.11.0-3.el10.x86_64.rpm      2.5 MB/s |  34 kB     00:00    
(56/150): libcap-ng-0.9.3-2.el10.x86_64.rpm     2.2 MB/s |  33 kB     00:00    
(57/150): libcom_err-1.47.1-5.el10.x86_64.rpm   1.8 MB/s |  26 kB     00:00    
(58/150): libeconf-0.6.2-4.el10.x86_64.rpm      2.3 MB/s |  33 kB     00:00    
(59/150): libcurl-8.12.1-6.el10.x86_64.rpm       24 MB/s | 368 kB     00:00    
(60/150): libfdisk-2.40.2-20.el10.x86_64.rpm     11 MB/s | 160 kB     00:00    
(61/150): libevent-2.1.12-16.el10.x86_64.rpm     16 MB/s | 261 kB     00:00    
(62/150): libffi-3.4.4-10.el10.x86_64.rpm       2.7 MB/s |  41 kB     00:00    
(63/150): libfido2-1.14.0-7.el10.x86_64.rpm     6.9 MB/s |  98 kB     00:00    
(64/150): libgcc-14.4.1-3.el10.x86_64.rpm       8.8 MB/s | 130 kB     00:00    
(65/150): libgomp-14.4.1-3.el10.x86_64.rpm       23 MB/s | 353 kB     00:00    
(66/150): libidn2-2.3.7-3.el10.x86_64.rpm       8.2 MB/s | 118 kB     00:00    
(67/150): libmount-2.40.2-20.el10.x86_64.rpm     10 MB/s | 154 kB     00:00    
(68/150): libnghttp2-1.68.0-6.el10.x86_64.rpm   5.0 MB/s |  73 kB     00:00    
(69/150): libpkgconf-2.1.0-3.el10.x86_64.rpm    2.8 MB/s |  39 kB     00:00    
(70/150): libpsl-0.21.5-6.el10.x86_64.rpm       4.5 MB/s |  65 kB     00:00    
(71/150): libpwquality-1.4.5-13.el10.x86_64.rpm 8.1 MB/s | 121 kB     00:00    
(72/150): libselinux-3.11-2.el10.x86_64.rpm     6.9 MB/s |  99 kB     00:00    
(73/150): libsemanage-3.11-1.el10.x86_64.rpm    8.2 MB/s | 122 kB     00:00    
(74/150): libsepol-3.11-2.el10.x86_64.rpm        23 MB/s | 349 kB     00:00    
(75/150): libsmartcols-2.40.2-20.el10.x86_64.rp 5.8 MB/s |  82 kB     00:00    
(76/150): libssh-0.12.2-2.el10.x86_64.rpm        18 MB/s | 279 kB     00:00    
(77/150): libssh-config-0.12.2-2.el10.noarch.rp 582 kB/s | 8.4 kB     00:00    
(78/150): libstdc++-14.4.1-3.el10.x86_64.rpm     54 MB/s | 913 kB     00:00    
(79/150): libtasn1-4.20.0-5.el10.x86_64.rpm     5.1 MB/s |  74 kB     00:00    
(80/150): libunistring-1.1-10.el10.x86_64.rpm    35 MB/s | 548 kB     00:00    
(81/150): libutempter-1.2.1-15.el10.x86_64.rpm  1.9 MB/s |  27 kB     00:00    
(82/150): libuuid-2.40.2-20.el10.x86_64.rpm     1.9 MB/s |  28 kB     00:00    
(83/150): libverto-0.3.2-10.el10.x86_64.rpm     1.5 MB/s |  22 kB     00:00    
(84/150): libxcrypt-4.4.36-10.el10.x86_64.rpm   8.4 MB/s | 120 kB     00:00    
(85/150): libxml2-2.12.5-15.el10.x86_64.rpm      42 MB/s | 691 kB     00:00    
(86/150): libzstd-1.5.5-9.el10.x86_64.rpm        18 MB/s | 292 kB     00:00    
(87/150): lua-libs-5.4.8-1.el10.x86_64.rpm      9.1 MB/s | 131 kB     00:00    
(88/150): lz4-libs-1.9.4-8.el10.x86_64.rpm      4.6 MB/s |  68 kB     00:00    
(89/150): mpfr-4.2.1-8.el10.x86_64.rpm           22 MB/s | 346 kB     00:00    
(90/150): ncurses-base-6.4-15.20240127.el10.noa 6.9 MB/s |  98 kB     00:00    
(91/150): ncurses-libs-6.4-15.20240127.el10.x86  22 MB/s | 337 kB     00:00    
(92/150): openldap-2.6.13-1.el10.x86_64.rpm      16 MB/s | 240 kB     00:00    
(93/150): openssl-fips-provider-3.5.7-3.el10.x8  50 MB/s | 813 kB     00:00    
(94/150): p11-kit-0.26.4-1.el10.x86_64.rpm       35 MB/s | 563 kB     00:00    
(95/150): openssl-libs-3.5.7-3.el10.x86_64.rpm  106 MB/s | 2.3 MB     00:00    
(96/150): p11-kit-trust-0.26.4-1.el10.x86_64.rp 9.7 MB/s | 140 kB     00:00    
(97/150): pam-1.6.1-11.el10.x86_64.rpm           37 MB/s | 585 kB     00:00    
(98/150): pam-libs-1.6.1-11.el10.x86_64.rpm     3.8 MB/s |  55 kB     00:00    
(99/150): pcre2-10.44-1.el10.3.x86_64.rpm        17 MB/s | 248 kB     00:00    
(100/150): pcre2-syntax-10.44-1.el10.3.noarch.r  10 MB/s | 151 kB     00:00    
(101/150): pkgconf-2.1.0-3.el10.x86_64.rpm      3.1 MB/s |  45 kB     00:00    
(102/150): pkgconf-m4-2.1.0-3.el10.noarch.rpm   1.1 MB/s |  15 kB     00:00    
(103/150): pkgconf-pkg-config-2.1.0-3.el10.x86_ 742 kB/s |  11 kB     00:00    
(104/150): popt-1.19-8.el10.x86_64.rpm          4.6 MB/s |  66 kB     00:00    
(105/150): publicsuffix-list-dafsa-20240107-5.e 4.2 MB/s |  59 kB     00:00    
(106/150): readline-8.2-11.el10.x86_64.rpm       14 MB/s | 214 kB     00:00    
(107/150): rpm-4.19.1.1-25.el10.x86_64.rpm       35 MB/s | 560 kB     00:00    
(108/150): rpm-build-libs-4.19.1.1-25.el10.x86_ 6.5 MB/s |  92 kB     00:00    
(109/150): rpm-libs-4.19.1.1-25.el10.x86_64.rpm  20 MB/s | 311 kB     00:00    
(110/150): sed-4.9-5.el10.x86_64.rpm             22 MB/s | 318 kB     00:00    
(111/150): rpm-sequoia-1.10.2.3-1.el10.x86_64.r  55 MB/s | 974 kB     00:00    
(112/150): setup-2.14.5-7.el10.noarch.rpm        10 MB/s | 153 kB     00:00    
(113/150): shadow-utils-4.15.0-13.el10.x86_64.r  76 MB/s | 1.3 MB     00:00    
(114/150): sqlite-libs-3.46.1-6.el10.x86_64.rpm  41 MB/s | 744 kB     00:00    
(115/150): systemd-libs-257-33.el10.x86_64.rpm   52 MB/s | 854 kB     00:00    
(116/150): tar-1.35-13.el10.x86_64.rpm           53 MB/s | 867 kB     00:00    
(117/150): unzip-6.0-69.el10.x86_64.rpm          12 MB/s | 190 kB     00:00    
(118/150): util-linux-2.40.2-20.el10.x86_64.rpm  73 MB/s | 1.3 MB     00:00    
(119/150): which-2.21-44.el10.x86_64.rpm        2.9 MB/s |  42 kB     00:00    
(120/150): util-linux-core-2.40.2-20.el10.x86_6  35 MB/s | 550 kB     00:00    
(121/150): xz-5.6.2-5.el10.x86_64.rpm            31 MB/s | 480 kB     00:00    
(122/150): xz-libs-5.6.2-5.el10.x86_64.rpm      8.0 MB/s | 111 kB     00:00    
(123/150): zip-3.0-45.el10.x86_64.rpm            18 MB/s | 270 kB     00:00    
(124/150): zlib-ng-compat-2.2.3-3.el10.x86_64.r 5.1 MB/s |  76 kB     00:00    
(125/150): zstd-1.5.5-9.el10.x86_64.rpm          31 MB/s | 464 kB     00:00    
(126/150): efi-srpm-macros-6-8.el10.noarch.rpm   47 kB/s |  23 kB     00:00    
(127/150): debugedit-5.3-2.el10.x86_64.rpm      158 kB/s |  87 kB     00:00    
(128/150): dwz-0.16-1.el10.x86_64.rpm           227 kB/s | 140 kB     00:00    
(129/150): fonts-srpm-macros-2.0.5-18.el10.noar 202 kB/s |  27 kB     00:00    
(130/150): forge-srpm-macros-0.4.0-6.el10.noarc 157 kB/s |  21 kB     00:00    
(131/150): go-srpm-macros-3.8.0-1.el10.noarch.r 199 kB/s |  27 kB     00:00    
(132/150): kernel-srpm-macros-1.0-29.el10.noarc  64 kB/s | 8.7 kB     00:00    
(133/150): lua-srpm-macros-1-15.el10.noarch.rpm  73 kB/s | 9.8 kB     00:00    
(134/150): ocaml-srpm-macros-10-4.el10.noarch.r  75 kB/s |  10 kB     00:00    
(135/150): openblas-srpm-macros-2-19.el10.noarc  65 kB/s | 8.7 kB     00:00    
(136/150): package-notes-srpm-macros-0.5-13.el1  76 kB/s |  10 kB     00:00    
(137/150): perl-srpm-macros-1-57.el10.noarch.rp  70 kB/s | 9.5 kB     00:00    
(138/150): patch-2.7.6-26.el10.x86_64.rpm       661 kB/s | 132 kB     00:00    
(139/150): pyproject-srpm-macros-1.23.2-1.el10. 115 kB/s |  15 kB     00:00    
(140/150): python-srpm-macros-3.12-11.el10.noar 167 kB/s |  22 kB     00:00    
(141/150): qt6-srpm-macros-6.10.1-1.el10.noarch  68 kB/s | 9.1 kB     00:00    
(142/150): redhat-rpm-config-296-1.el10.noarch. 364 kB/s |  73 kB     00:00    
(143/150): rpm-build-4.19.1.1-25.el10.x86_64.rp 378 kB/s |  76 kB     00:00    
(144/150): rust-toolset-srpm-macros-1.97.1-4.el  76 kB/s |  10 kB     00:00    
(145/150): R-srpm-macros-1.3.7-2.el10_3.noarch.  83 kB/s |  11 kB     00:00    
(146/150): epel-rpm-macros-10-7.el10_3.noarch.r 183 kB/s | 8.4 kB     00:00    
(147/150): ansible-srpm-macros-1-21.el10_3.noar 118 kB/s |  20 kB     00:00    
(148/150): fpc-srpm-macros-1.3-7.el10_1.noarch. 181 kB/s | 7.8 kB     00:00    
(149/150): ghc-srpm-macros-1.9.2-1.el10_0.noarc 194 kB/s | 9.1 kB     00:00    
(150/150): gdb-minimal-17.2-3.el10.x86_64.rpm   1.0 MB/s | 4.5 MB     00:04    
--------------------------------------------------------------------------------
Total                                           9.9 MB/s |  61 MB     00:06     
CentOS Stream 10 - BaseOS                       1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x8483C65D:
 Userid     : "CentOS (CentOS Official Signing Key) <security@centos.org>"
 Fingerprint: 99DB 70FA E1D7 CE22 7FB6 4882 05B5 55B3 8483 C65D
 From       : /usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-Official-SHA256
Key imported successfully
Extra Packages for Enterprise Linux 10 - x86_64 1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xE37ED158:
 Userid     : "Fedora (epel10) <epel@fedoraproject.org>"
 Fingerprint: 7D8D 15CB FC4E 6268 8591 FB26 33D9 8517 E37E D158
 From       : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-10
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-17.el10.x86_64                         1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-14.4.1-3.el10.x86_64                          1/150 
  Running scriptlet: libgcc-14.4.1-3.el10.x86_64                          1/150 
  Installing       : ghc-srpm-macros-1.9.2-1.el10_0.noarch                2/150 
  Installing       : fpc-srpm-macros-1.3-7.el10_1.noarch                  3/150 
  Installing       : ansible-srpm-macros-1-21.el10_3.noarch               4/150 
  Installing       : rust-toolset-srpm-macros-1.97.1-4.el10.noarch        5/150 
  Installing       : qt6-srpm-macros-6.10.1-1.el10.noarch                 6/150 
  Installing       : perl-srpm-macros-1-57.el10.noarch                    7/150 
  Installing       : package-notes-srpm-macros-0.5-13.el10.noarch         8/150 
  Installing       : openblas-srpm-macros-2-19.el10.noarch                9/150 
  Installing       : ocaml-srpm-macros-10-4.el10.noarch                  10/150 
  Installing       : kernel-srpm-macros-1.0-29.el10.noarch               11/150 
  Installing       : publicsuffix-list-dafsa-20240107-5.el10.noarch      12/150 
  Installing       : pkgconf-m4-2.1.0-3.el10.noarch                      13/150 
  Installing       : pcre2-syntax-10.44-1.el10.3.noarch                  14/150 
  Installing       : ncurses-base-6.4-15.20240127.el10.noarch            15/150 
  Installing       : libssh-config-0.12.2-2.el10.noarch                  16/150 
  Installing       : coreutils-common-9.5-13.el10.x86_64                 17/150 
  Installing       : centos-gpg-keys-10.0-23.el10.noarch                 18/150 
  Installing       : centos-stream-repos-10.0-23.el10.noarch             19/150 
  Installing       : centos-stream-release-10.0-23.el10.noarch           20/150 
  Installing       : setup-2.14.5-7.el10.noarch                          21/150 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.5-7.el10.noarch                          21/150 
  Installing       : filesystem-3.18-17.el10.x86_64                      22/150 
  Installing       : basesystem-11-22.el10.noarch                        23/150 
  Installing       : glibc-gconv-extra-2.39-137.el10.x86_64              24/150 
  Running scriptlet: glibc-gconv-extra-2.39-137.el10.x86_64              24/150 
  Installing       : glibc-minimal-langpack-2.39-137.el10.x86_64         25/150 
  Installing       : glibc-common-2.39-137.el10.x86_64                   26/150 
  Running scriptlet: glibc-2.39-137.el10.x86_64                          27/150 
  Installing       : glibc-2.39-137.el10.x86_64                          27/150 
  Running scriptlet: glibc-2.39-137.el10.x86_64                          27/150 
  Installing       : ncurses-libs-6.4-15.20240127.el10.x86_64            28/150 
  Installing       : bash-5.2.26-6.el10.x86_64                           29/150 
  Running scriptlet: bash-5.2.26-6.el10.x86_64                           29/150 
  Installing       : zlib-ng-compat-2.2.3-3.el10.x86_64                  30/150 
  Installing       : bzip2-libs-1.0.8-25.el10.x86_64                     31/150 
  Installing       : xz-libs-1:5.6.2-5.el10.x86_64                       32/150 
  Installing       : libacl-2.4.0-2.el10.x86_64                          33/150 
  Installing       : readline-8.2-11.el10.x86_64                         34/150 
  Installing       : libstdc++-14.4.1-3.el10.x86_64                      35/150 
  Installing       : libuuid-2.40.2-20.el10.x86_64                       36/150 
  Installing       : popt-1.19-8.el10.x86_64                             37/150 
  Installing       : libblkid-2.40.2-20.el10.x86_64                      38/150 
  Installing       : gmp-1:6.2.1-12.el10.x86_64                          39/150 
  Installing       : libxcrypt-4.4.36-10.el10.x86_64                     40/150 
  Installing       : libzstd-1.5.5-9.el10.x86_64                         41/150 
  Installing       : elfutils-libelf-0.195-1.el10.x86_64                 42/150 
  Running scriptlet: crypto-policies-20260811-1.git4dcd294.el10.noarc    43/150 
  Installing       : crypto-policies-20260811-1.git4dcd294.el10.noarc    43/150 
  Running scriptlet: crypto-policies-20260811-1.git4dcd294.el10.noarc    43/150 
  Installing       : gdbm-libs-1:1.23-14.el10.x86_64                     44/150 
  Installing       : libattr-2.6.0-2.el10.x86_64                         45/150 
  Installing       : libeconf-0.6.2-4.el10.x86_64                        46/150 
  Installing       : dwz-0.16-1.el10.x86_64                              47/150 
  Installing       : mpfr-4.2.1-8.el10.x86_64                            48/150 
  Installing       : gawk-5.3.0-7.el10.x86_64                            49/150 
  Installing       : unzip-6.0-69.el10.x86_64                            50/150 
  Installing       : file-libs-5.45-12.el10.x86_64                       51/150 
  Installing       : file-5.45-12.el10.x86_64                            52/150 
  Installing       : alternatives-1.30-2.el10.x86_64                     53/150 
  Installing       : jansson-2.14-3.el10.x86_64                          54/150 
  Installing       : libcap-ng-0.9.3-2.el10.x86_64                       55/150 
  Installing       : audit-libs-4.2.1-3.el10.x86_64                      56/150 
  Installing       : pam-libs-1.6.1-11.el10.x86_64                       57/150 
  Installing       : libcap-2.69-7.el10.x86_64                           58/150 
  Installing       : systemd-libs-257-33.el10.x86_64                     59/150 
  Installing       : libffi-3.4.4-10.el10.x86_64                         60/150 
  Installing       : libsepol-3.11-2.el10.x86_64                         61/150 
  Installing       : libsmartcols-2.40.2-20.el10.x86_64                  62/150 
  Installing       : libtasn1-4.20.0-5.el10.x86_64                       63/150 
  Installing       : libunistring-1.1-10.el10.x86_64                     64/150 
  Installing       : libidn2-2.3.7-3.el10.x86_64                         65/150 
  Installing       : lua-libs-5.4.8-1.el10.x86_64                        66/150 
  Installing       : lz4-libs-1.9.4-8.el10.x86_64                        67/150 
  Installing       : pcre2-10.44-1.el10.3.x86_64                         68/150 
  Installing       : libselinux-3.11-2.el10.x86_64                       69/150 
  Installing       : sed-4.9-5.el10.x86_64                               70/150 
  Installing       : findutils-1:4.10.0-5.el10.x86_64                    71/150 
  Installing       : grep-3.11-10.el10.x86_64                            72/150 
  Installing       : xz-1:5.6.2-5.el10.x86_64                            73/150 
  Installing       : libmount-2.40.2-20.el10.x86_64                      74/150 
  Installing       : util-linux-core-2.40.2-20.el10.x86_64               75/150 
  Installing       : libsemanage-3.11-1.el10.x86_64                      76/150 
  Installing       : shadow-utils-2:4.15.0-13.el10.x86_64                77/150 
  Running scriptlet: libutempter-1.2.1-15.el10.x86_64                    78/150 
  Installing       : libutempter-1.2.1-15.el10.x86_64                    78/150 
  Installing       : tar-2:1.35-13.el10.x86_64                           79/150 
  Installing       : zstd-1.5.5-9.el10.x86_64                            80/150 
  Installing       : libpsl-0.21.5-6.el10.x86_64                         81/150 
  Installing       : p11-kit-0.26.4-1.el10.x86_64                        82/150 
  Installing       : p11-kit-trust-0.26.4-1.el10.x86_64                  83/150 
  Running scriptlet: p11-kit-trust-0.26.4-1.el10.x86_64                  83/150 
  Installing       : openssl-fips-provider-1:3.5.7-3.el10.x86_64         84/150 
  Installing       : openssl-libs-1:3.5.7-3.el10.x86_64                  85/150 
  Installing       : coreutils-9.5-13.el10.x86_64                        86/150 
  Running scriptlet: ca-certificates-2026.2.90_v9.0.316-100.0.el10.no    87/150 
  Installing       : ca-certificates-2026.2.90_v9.0.316-100.0.el10.no    87/150 
  Running scriptlet: ca-certificates-2026.2.90_v9.0.316-100.0.el10.no    87/150 
  Installing       : authselect-libs-1.5.3-1.el10.x86_64                 88/150 
  Installing       : gzip-1.13-4.el10.x86_64                             89/150 
  Installing       : cracklib-2.9.11-8.el10.x86_64                       90/150 
  Installing       : cracklib-dicts-2.9.11-8.el10.x86_64                 91/150 
  Installing       : libpwquality-1.4.5-13.el10.x86_64                   92/150 
  Installing       : libevent-2.1.12-16.el10.x86_64                      93/150 
  Installing       : rpm-sequoia-1.10.2.3-1.el10.x86_64                  94/150 
  Installing       : zip-3.0-45.el10.x86_64                              95/150 
  Installing       : cyrus-sasl-lib-2.1.28-27.el10.x86_64                96/150 
  Installing       : openldap-2.6.13-1.el10.x86_64                       97/150 
  Installing       : gdbm-1:1.23-14.el10.x86_64                          98/150 
  Installing       : pam-1.6.1-11.el10.x86_64                            99/150 
  Installing       : libfdisk-2.40.2-20.el10.x86_64                     100/150 
  Installing       : libxml2-2.12.5-15.el10.x86_64                      101/150 
  Installing       : libarchive-3.7.7-11.el10.x86_64                    102/150 
  Installing       : bzip2-1.0.8-25.el10.x86_64                         103/150 
  Installing       : sqlite-libs-3.46.1-6.el10.x86_64                   104/150 
  Installing       : rpm-libs-4.19.1.1-25.el10.x86_64                   105/150 
  Installing       : ed-1.20-5.el10.x86_64                              106/150 
  Installing       : patch-2.7.6-26.el10.x86_64                         107/150 
  Installing       : elfutils-default-yama-scope-0.195-1.el10.noarch    108/150 
  Running scriptlet: elfutils-default-yama-scope-0.195-1.el10.noarch    108/150 
  Installing       : cpio-2.15-3.el10.x86_64                            109/150 
  Installing       : diffutils-3.10-8.el10.x86_64                       110/150 
  Installing       : json-c-0.18-3.el10.x86_64                          111/150 
  Installing       : keyutils-libs-1.6.3-5.el10.x86_64                  112/150 
  Installing       : libbrotli-1.1.0-8.el10.x86_64                      113/150 
  Installing       : libcbor-0.11.0-3.el10.x86_64                       114/150 
  Installing       : libfido2-1.14.0-7.el10.x86_64                      115/150 
  Installing       : libcom_err-1.47.1-5.el10.x86_64                    116/150 
  Installing       : libgomp-14.4.1-3.el10.x86_64                       117/150 
  Installing       : libnghttp2-1.68.0-6.el10.x86_64                    118/150 
  Installing       : libpkgconf-2.1.0-3.el10.x86_64                     119/150 
  Installing       : pkgconf-2.1.0-3.el10.x86_64                        120/150 
  Installing       : pkgconf-pkg-config-2.1.0-3.el10.x86_64             121/150 
  Installing       : libverto-0.3.2-10.el10.x86_64                      122/150 
  Installing       : krb5-libs-1.21.3-11.el10.x86_64                    123/150 
  Installing       : libssh-0.12.2-2.el10.x86_64                        124/150 
  Installing       : libcurl-8.12.1-6.el10.x86_64                       125/150 
  Installing       : elfutils-libs-0.195-1.el10.x86_64                  126/150 
  Installing       : elfutils-debuginfod-client-0.195-1.el10.x86_64     127/150 
  Installing       : binutils-gold-2.41-65.el10.x86_64                  128/150 
  Running scriptlet: binutils-gold-2.41-65.el10.x86_64                  128/150 
  Installing       : binutils-2.41-65.el10.x86_64                       129/150 
  Running scriptlet: binutils-2.41-65.el10.x86_64                       129/150 
  Installing       : elfutils-0.195-1.el10.x86_64                       130/150 
  Installing       : gdb-minimal-17.2-3.el10.x86_64                     131/150 
  Installing       : debugedit-5.3-2.el10.x86_64                        132/150 
  Installing       : rpm-build-libs-4.19.1.1-25.el10.x86_64             133/150 
  Installing       : curl-8.12.1-6.el10.x86_64                          134/150 
  Running scriptlet: rpm-4.19.1.1-25.el10.x86_64                        135/150 
  Installing       : rpm-4.19.1.1-25.el10.x86_64                        135/150 
  Installing       : efi-srpm-macros-6-8.el10.noarch                    136/150 
  Installing       : lua-srpm-macros-1-15.el10.noarch                   137/150 
  Installing       : fonts-srpm-macros-1:2.0.5-18.el10.noarch           138/150 
  Installing       : forge-srpm-macros-0.4.0-6.el10.noarch              139/150 
  Installing       : go-srpm-macros-3.8.0-1.el10.noarch                 140/150 
  Installing       : python-srpm-macros-3.12-11.el10.noarch             141/150 
  Installing       : redhat-rpm-config-296-1.el10.noarch                142/150 
  Installing       : rpm-build-4.19.1.1-25.el10.x86_64                  143/150 
  Installing       : pyproject-srpm-macros-1.23.2-1.el10.noarch         144/150 
  Installing       : R-srpm-macros-1.3.7-2.el10_3.noarch                145/150 
  Installing       : epel-rpm-macros-10-7.el10_3.noarch                 146/150 
  Installing       : util-linux-2.40.2-20.el10.x86_64                   147/150 
  Running scriptlet: util-linux-2.40.2-20.el10.x86_64                   147/150 
  Installing       : authselect-1.5.3-1.el10.x86_64                     148/150 
  Installing       : which-2.21-44.el10.x86_64                          149/150 
  Installing       : info-7.1-6.el10.x86_64                             150/150 
  Running scriptlet: filesystem-3.18-17.el10.x86_64                     150/150 
  Running scriptlet: ca-certificates-2026.2.90_v9.0.316-100.0.el10.no   150/150 
  Running scriptlet: authselect-libs-1.5.3-1.el10.x86_64                150/150 
  Running scriptlet: rpm-4.19.1.1-25.el10.x86_64                        150/150 
  Running scriptlet: info-7.1-6.el10.x86_64                             150/150 

Installed:
  R-srpm-macros-1.3.7-2.el10_3.noarch                                           
  alternatives-1.30-2.el10.x86_64                                               
  ansible-srpm-macros-1-21.el10_3.noarch                                        
  audit-libs-4.2.1-3.el10.x86_64                                                
  authselect-1.5.3-1.el10.x86_64                                                
  authselect-libs-1.5.3-1.el10.x86_64                                           
  basesystem-11-22.el10.noarch                                                  
  bash-5.2.26-6.el10.x86_64                                                     
  binutils-2.41-65.el10.x86_64                                                  
  binutils-gold-2.41-65.el10.x86_64                                             
  bzip2-1.0.8-25.el10.x86_64                                                    
  bzip2-libs-1.0.8-25.el10.x86_64                                               
  ca-certificates-2026.2.90_v9.0.316-100.0.el10.noarch                          
  centos-gpg-keys-10.0-23.el10.noarch                                           
  centos-stream-release-10.0-23.el10.noarch                                     
  centos-stream-repos-10.0-23.el10.noarch                                       
  coreutils-9.5-13.el10.x86_64                                                  
  coreutils-common-9.5-13.el10.x86_64                                           
  cpio-2.15-3.el10.x86_64                                                       
  cracklib-2.9.11-8.el10.x86_64                                                 
  cracklib-dicts-2.9.11-8.el10.x86_64                                           
  crypto-policies-20260811-1.git4dcd294.el10.noarch                             
  curl-8.12.1-6.el10.x86_64                                                     
  cyrus-sasl-lib-2.1.28-27.el10.x86_64                                          
  debugedit-5.3-2.el10.x86_64                                                   
  diffutils-3.10-8.el10.x86_64                                                  
  dwz-0.16-1.el10.x86_64                                                        
  ed-1.20-5.el10.x86_64                                                         
  efi-srpm-macros-6-8.el10.noarch                                               
  elfutils-0.195-1.el10.x86_64                                                  
  elfutils-debuginfod-client-0.195-1.el10.x86_64                                
  elfutils-default-yama-scope-0.195-1.el10.noarch                               
  elfutils-libelf-0.195-1.el10.x86_64                                           
  elfutils-libs-0.195-1.el10.x86_64                                             
  epel-rpm-macros-10-7.el10_3.noarch                                            
  file-5.45-12.el10.x86_64                                                      
  file-libs-5.45-12.el10.x86_64                                                 
  filesystem-3.18-17.el10.x86_64                                                
  findutils-1:4.10.0-5.el10.x86_64                                              
  fonts-srpm-macros-1:2.0.5-18.el10.noarch                                      
  forge-srpm-macros-0.4.0-6.el10.noarch                                         
  fpc-srpm-macros-1.3-7.el10_1.noarch                                           
  gawk-5.3.0-7.el10.x86_64                                                      
  gdb-minimal-17.2-3.el10.x86_64                                                
  gdbm-1:1.23-14.el10.x86_64                                                    
  gdbm-libs-1:1.23-14.el10.x86_64                                               
  ghc-srpm-macros-1.9.2-1.el10_0.noarch                                         
  glibc-2.39-137.el10.x86_64                                                    
  glibc-common-2.39-137.el10.x86_64                                             
  glibc-gconv-extra-2.39-137.el10.x86_64                                        
  glibc-minimal-langpack-2.39-137.el10.x86_64                                   
  gmp-1:6.2.1-12.el10.x86_64                                                    
  go-srpm-macros-3.8.0-1.el10.noarch                                            
  grep-3.11-10.el10.x86_64                                                      
  gzip-1.13-4.el10.x86_64                                                       
  info-7.1-6.el10.x86_64                                                        
  jansson-2.14-3.el10.x86_64                                                    
  json-c-0.18-3.el10.x86_64                                                     
  kernel-srpm-macros-1.0-29.el10.noarch                                         
  keyutils-libs-1.6.3-5.el10.x86_64                                             
  krb5-libs-1.21.3-11.el10.x86_64                                               
  libacl-2.4.0-2.el10.x86_64                                                    
  libarchive-3.7.7-11.el10.x86_64                                               
  libattr-2.6.0-2.el10.x86_64                                                   
  libblkid-2.40.2-20.el10.x86_64                                                
  libbrotli-1.1.0-8.el10.x86_64                                                 
  libcap-2.69-7.el10.x86_64                                                     
  libcap-ng-0.9.3-2.el10.x86_64                                                 
  libcbor-0.11.0-3.el10.x86_64                                                  
  libcom_err-1.47.1-5.el10.x86_64                                               
  libcurl-8.12.1-6.el10.x86_64                                                  
  libeconf-0.6.2-4.el10.x86_64                                                  
  libevent-2.1.12-16.el10.x86_64                                                
  libfdisk-2.40.2-20.el10.x86_64                                                
  libffi-3.4.4-10.el10.x86_64                                                   
  libfido2-1.14.0-7.el10.x86_64                                                 
  libgcc-14.4.1-3.el10.x86_64                                                   
  libgomp-14.4.1-3.el10.x86_64                                                  
  libidn2-2.3.7-3.el10.x86_64                                                   
  libmount-2.40.2-20.el10.x86_64                                                
  libnghttp2-1.68.0-6.el10.x86_64                                               
  libpkgconf-2.1.0-3.el10.x86_64                                                
  libpsl-0.21.5-6.el10.x86_64                                                   
  libpwquality-1.4.5-13.el10.x86_64                                             
  libselinux-3.11-2.el10.x86_64                                                 
  libsemanage-3.11-1.el10.x86_64                                                
  libsepol-3.11-2.el10.x86_64                                                   
  libsmartcols-2.40.2-20.el10.x86_64                                            
  libssh-0.12.2-2.el10.x86_64                                                   
  libssh-config-0.12.2-2.el10.noarch                                            
  libstdc++-14.4.1-3.el10.x86_64                                                
  libtasn1-4.20.0-5.el10.x86_64                                                 
  libunistring-1.1-10.el10.x86_64                                               
  libutempter-1.2.1-15.el10.x86_64                                              
  libuuid-2.40.2-20.el10.x86_64                                                 
  libverto-0.3.2-10.el10.x86_64                                                 
  libxcrypt-4.4.36-10.el10.x86_64                                               
  libxml2-2.12.5-15.el10.x86_64                                                 
  libzstd-1.5.5-9.el10.x86_64                                                   
  lua-libs-5.4.8-1.el10.x86_64                                                  
  lua-srpm-macros-1-15.el10.noarch                                              
  lz4-libs-1.9.4-8.el10.x86_64                                                  
  mpfr-4.2.1-8.el10.x86_64                                                      
  ncurses-base-6.4-15.20240127.el10.noarch                                      
  ncurses-libs-6.4-15.20240127.el10.x86_64                                      
  ocaml-srpm-macros-10-4.el10.noarch                                            
  openblas-srpm-macros-2-19.el10.noarch                                         
  openldap-2.6.13-1.el10.x86_64                                                 
  openssl-fips-provider-1:3.5.7-3.el10.x86_64                                   
  openssl-libs-1:3.5.7-3.el10.x86_64                                            
  p11-kit-0.26.4-1.el10.x86_64                                                  
  p11-kit-trust-0.26.4-1.el10.x86_64                                            
  package-notes-srpm-macros-0.5-13.el10.noarch                                  
  pam-1.6.1-11.el10.x86_64                                                      
  pam-libs-1.6.1-11.el10.x86_64                                                 
  patch-2.7.6-26.el10.x86_64                                                    
  pcre2-10.44-1.el10.3.x86_64                                                   
  pcre2-syntax-10.44-1.el10.3.noarch                                            
  perl-srpm-macros-1-57.el10.noarch                                             
  pkgconf-2.1.0-3.el10.x86_64                                                   
  pkgconf-m4-2.1.0-3.el10.noarch                                                
  pkgconf-pkg-config-2.1.0-3.el10.x86_64                                        
  popt-1.19-8.el10.x86_64                                                       
  publicsuffix-list-dafsa-20240107-5.el10.noarch                                
  pyproject-srpm-macros-1.23.2-1.el10.noarch                                    
  python-srpm-macros-3.12-11.el10.noarch                                        
  qt6-srpm-macros-6.10.1-1.el10.noarch                                          
  readline-8.2-11.el10.x86_64                                                   
  redhat-rpm-config-296-1.el10.noarch                                           
  rpm-4.19.1.1-25.el10.x86_64                                                   
  rpm-build-4.19.1.1-25.el10.x86_64                                             
  rpm-build-libs-4.19.1.1-25.el10.x86_64                                        
  rpm-libs-4.19.1.1-25.el10.x86_64                                              
  rpm-sequoia-1.10.2.3-1.el10.x86_64                                            
  rust-toolset-srpm-macros-1.97.1-4.el10.noarch                                 
  sed-4.9-5.el10.x86_64                                                         
  setup-2.14.5-7.el10.noarch                                                    
  shadow-utils-2:4.15.0-13.el10.x86_64                                          
  sqlite-libs-3.46.1-6.el10.x86_64                                              
  systemd-libs-257-33.el10.x86_64                                               
  tar-2:1.35-13.el10.x86_64                                                     
  unzip-6.0-69.el10.x86_64                                                      
  util-linux-2.40.2-20.el10.x86_64                                              
  util-linux-core-2.40.2-20.el10.x86_64                                         
  which-2.21-44.el10.x86_64                                                     
  xz-1:5.6.2-5.el10.x86_64                                                      
  xz-libs-1:5.6.2-5.el10.x86_64                                                 
  zip-3.0-45.el10.x86_64                                                        
  zlib-ng-compat-2.2.3-3.el10.x86_64                                            
  zstd-1.5.5-9.el10.x86_64                                                      

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.7-2.el10_3.noarch
alternatives-1.30-2.el10.x86_64
ansible-srpm-macros-1-21.el10_3.noarch
audit-libs-4.2.1-3.el10.x86_64
authselect-1.5.3-1.el10.x86_64
authselect-libs-1.5.3-1.el10.x86_64
basesystem-11-22.el10.noarch
bash-5.2.26-6.el10.x86_64
binutils-2.41-65.el10.x86_64
binutils-gold-2.41-65.el10.x86_64
bzip2-1.0.8-25.el10.x86_64
bzip2-libs-1.0.8-25.el10.x86_64
ca-certificates-2026.2.90_v9.0.316-100.0.el10.noarch
centos-gpg-keys-10.0-23.el10.noarch
centos-stream-release-10.0-23.el10.noarch
centos-stream-repos-10.0-23.el10.noarch
coreutils-9.5-13.el10.x86_64
coreutils-common-9.5-13.el10.x86_64
cpio-2.15-3.el10.x86_64
cracklib-2.9.11-8.el10.x86_64
cracklib-dicts-2.9.11-8.el10.x86_64
crypto-policies-20260811-1.git4dcd294.el10.noarch
curl-8.12.1-6.el10.x86_64
cyrus-sasl-lib-2.1.28-27.el10.x86_64
debugedit-5.3-2.el10.x86_64
diffutils-3.10-8.el10.x86_64
dwz-0.16-1.el10.x86_64
ed-1.20-5.el10.x86_64
efi-srpm-macros-6-8.el10.noarch
elfutils-0.195-1.el10.x86_64
elfutils-debuginfod-client-0.195-1.el10.x86_64
elfutils-default-yama-scope-0.195-1.el10.noarch
elfutils-libelf-0.195-1.el10.x86_64
elfutils-libs-0.195-1.el10.x86_64
epel-rpm-macros-10-7.el10_3.noarch
file-5.45-12.el10.x86_64
file-libs-5.45-12.el10.x86_64
filesystem-3.18-17.el10.x86_64
findutils-4.10.0-5.el10.x86_64
fonts-srpm-macros-2.0.5-18.el10.noarch
forge-srpm-macros-0.4.0-6.el10.noarch
fpc-srpm-macros-1.3-7.el10_1.noarch
gawk-5.3.0-7.el10.x86_64
gdb-minimal-17.2-3.el10.x86_64
gdbm-1.23-14.el10.x86_64
gdbm-libs-1.23-14.el10.x86_64
ghc-srpm-macros-1.9.2-1.el10_0.noarch
glibc-2.39-137.el10.x86_64
glibc-common-2.39-137.el10.x86_64
glibc-gconv-extra-2.39-137.el10.x86_64
glibc-minimal-langpack-2.39-137.el10.x86_64
gmp-6.2.1-12.el10.x86_64
go-srpm-macros-3.8.0-1.el10.noarch
gpg-pubkey-8483c65d-5ccc5b19
gpg-pubkey-e37ed158-65785fa9
grep-3.11-10.el10.x86_64
gzip-1.13-4.el10.x86_64
info-7.1-6.el10.x86_64
jansson-2.14-3.el10.x86_64
json-c-0.18-3.el10.x86_64
kernel-srpm-macros-1.0-29.el10.noarch
keyutils-libs-1.6.3-5.el10.x86_64
krb5-libs-1.21.3-11.el10.x86_64
libacl-2.4.0-2.el10.x86_64
libarchive-3.7.7-11.el10.x86_64
libattr-2.6.0-2.el10.x86_64
libblkid-2.40.2-20.el10.x86_64
libbrotli-1.1.0-8.el10.x86_64
libcap-2.69-7.el10.x86_64
libcap-ng-0.9.3-2.el10.x86_64
libcbor-0.11.0-3.el10.x86_64
libcom_err-1.47.1-5.el10.x86_64
libcurl-8.12.1-6.el10.x86_64
libeconf-0.6.2-4.el10.x86_64
libevent-2.1.12-16.el10.x86_64
libfdisk-2.40.2-20.el10.x86_64
libffi-3.4.4-10.el10.x86_64
libfido2-1.14.0-7.el10.x86_64
libgcc-14.4.1-3.el10.x86_64
libgomp-14.4.1-3.el10.x86_64
libidn2-2.3.7-3.el10.x86_64
libmount-2.40.2-20.el10.x86_64
libnghttp2-1.68.0-6.el10.x86_64
libpkgconf-2.1.0-3.el10.x86_64
libpsl-0.21.5-6.el10.x86_64
libpwquality-1.4.5-13.el10.x86_64
libselinux-3.11-2.el10.x86_64
libsemanage-3.11-1.el10.x86_64
libsepol-3.11-2.el10.x86_64
libsmartcols-2.40.2-20.el10.x86_64
libssh-0.12.2-2.el10.x86_64
libssh-config-0.12.2-2.el10.noarch
libstdc++-14.4.1-3.el10.x86_64
libtasn1-4.20.0-5.el10.x86_64
libunistring-1.1-10.el10.x86_64
libutempter-1.2.1-15.el10.x86_64
libuuid-2.40.2-20.el10.x86_64
libverto-0.3.2-10.el10.x86_64
libxcrypt-4.4.36-10.el10.x86_64
libxml2-2.12.5-15.el10.x86_64
libzstd-1.5.5-9.el10.x86_64
lua-libs-5.4.8-1.el10.x86_64
lua-srpm-macros-1-15.el10.noarch
lz4-libs-1.9.4-8.el10.x86_64
mpfr-4.2.1-8.el10.x86_64
ncurses-base-6.4-15.20240127.el10.noarch
ncurses-libs-6.4-15.20240127.el10.x86_64
ocaml-srpm-macros-10-4.el10.noarch
openblas-srpm-macros-2-19.el10.noarch
openldap-2.6.13-1.el10.x86_64
openssl-fips-provider-3.5.7-3.el10.x86_64
openssl-libs-3.5.7-3.el10.x86_64
p11-kit-0.26.4-1.el10.x86_64
p11-kit-trust-0.26.4-1.el10.x86_64
package-notes-srpm-macros-0.5-13.el10.noarch
pam-1.6.1-11.el10.x86_64
pam-libs-1.6.1-11.el10.x86_64
patch-2.7.6-26.el10.x86_64
pcre2-10.44-1.el10.3.x86_64
pcre2-syntax-10.44-1.el10.3.noarch
perl-srpm-macros-1-57.el10.noarch
pkgconf-2.1.0-3.el10.x86_64
pkgconf-m4-2.1.0-3.el10.noarch
pkgconf-pkg-config-2.1.0-3.el10.x86_64
popt-1.19-8.el10.x86_64
publicsuffix-list-dafsa-20240107-5.el10.noarch
pyproject-srpm-macros-1.23.2-1.el10.noarch
python-srpm-macros-3.12-11.el10.noarch
qt6-srpm-macros-6.10.1-1.el10.noarch
readline-8.2-11.el10.x86_64
redhat-rpm-config-296-1.el10.noarch
rpm-4.19.1.1-25.el10.x86_64
rpm-build-4.19.1.1-25.el10.x86_64
rpm-build-libs-4.19.1.1-25.el10.x86_64
rpm-libs-4.19.1.1-25.el10.x86_64
rpm-sequoia-1.10.2.3-1.el10.x86_64
rust-toolset-srpm-macros-1.97.1-4.el10.noarch
sed-4.9-5.el10.x86_64
setup-2.14.5-7.el10.noarch
shadow-utils-4.15.0-13.el10.x86_64
sqlite-libs-3.46.1-6.el10.x86_64
systemd-libs-257-33.el10.x86_64
tar-1.35-13.el10.x86_64
unzip-6.0-69.el10.x86_64
util-linux-2.40.2-20.el10.x86_64
util-linux-core-2.40.2-20.el10.x86_64
which-2.21-44.el10.x86_64
xz-5.6.2-5.el10.x86_64
xz-libs-5.6.2-5.el10.x86_64
zip-3.0-45.el10.x86_64
zlib-ng-compat-2.2.3-3.el10.x86_64
zstd-1.5.5-9.el10.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1787616000
Wrote: /builddir/build/SRPMS/pymol-3.1.0-17.el10.TMM.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root/var/log/dnf.rpm.log
/var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root/var/log/dnf.librepo.log
/var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root/var/log/dnf.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-z0r0izsz/pymol/pymol.spec) Config(child) 0 minutes 32 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/pymol-3.1.0-17.el10.TMM.src.rpm)  Config(centos-stream+epel-10-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/centos-stream+epel-10-x86_64-bootstrap-1788221599.074749/root.
INFO: reusing tmpfs at /var/lib/mock/centos-stream+epel-10-x86_64-bootstrap-1788221599.074749/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-25.el10.x86_64
  rpm-sequoia-1.10.2.3-1.el10.x86_64
  python3-dnf-4.20.0-27.el10.noarch
  python3-dnf-plugins-core-4.7.0-12.el10.noarch
  yum-4.20.0-27.el10.noarch
Finish: chroot init
Start: build phase for pymol-3.1.0-17.el10.TMM.src.rpm
Start: build setup for pymol-3.1.0-17.el10.TMM.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1787616000
Wrote: /builddir/build/SRPMS/pymol-3.1.0-17.el10.TMM.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 5.5 kB/s | 1.5 kB     00:00    
CentOS Stream 10 - BaseOS                        11 kB/s | 5.1 kB     00:00    
CentOS Stream 10 - AppStream                     23 kB/s | 5.2 kB     00:00    
CentOS Stream 10 - CRB                           49 kB/s | 5.0 kB     00:00    
CentOS Stream 10 - Extras packages               62 kB/s | 5.9 kB     00:00    
Extra Packages for Enterprise Linux 10 - x86_64  43 kB/s |  23 kB     00:00    
Dependencies resolved.
=================================================================================================
 Package                               Arch    Version                           Repo        Size
=================================================================================================
Installing:
 catch2-devel                          x86_64  2.13.10-5.el10_0                  epel       197 k
 desktop-file-utils                    x86_64  0.26-15.el10                      appstream   70 k
 fdupes                                x86_64  1:2.4.0-1.el10_1                  epel        59 k
 freeglut-devel                        x86_64  3.4.0-9.el10                      appstream  964 k
 freetype-devel                        x86_64  2.13.2-8.el10                     appstream  966 k
 gcc                                   x86_64  14.4.1-3.el10                     appstream   38 M
 gcc-c++                               x86_64  14.4.1-3.el10                     appstream   15 M
 glew-devel                            x86_64  2.2.0-9.el10_0                    epel       217 k
 glm-devel                             noarch  1.0.1-4.el10_2                    epel       249 k
 libappstream-glib                     x86_64  0.8.3-3.el10                      appstream  410 k
 libpng-devel                          x86_64  2:1.6.40-13.el10                  appstream  293 k
 libxml2-devel                         x86_64  2.12.5-15.el10                    appstream  534 k
 mesa-libGL-devel                      x86_64  26.1.1-2.el10                     appstream   28 k
 mmtf-cpp-devel                        x86_64  1.1.0-1.el10                      copr_base   30 k
 msgpack-devel                         x86_64  3.1.0-17.el10_0                   epel       312 k
 netcdf-devel                          x86_64  4.9.2-7.el10_0                    epel        91 k
 pyproject-rpm-macros                  noarch  1.23.2-1.el10                     crb         55 k
 python3-devel                         x86_64  3.12.13-3.el10                    appstream  328 k
 python3-pillow                        x86_64  11.0.0-1.el10_0                   epel       942 k
 python3-pyside6-devel                 x86_64  6.10.1-4.el10_3                   epel       396 k
 python3-pytest                        noarch  7.4.3-5.el10                      crb        756 k
 python3-qt5-devel                     x86_64  5.15.11-8.el10_2                  epel       392 k
Installing dependencies:
 abseil-cpp                            x86_64  20240722.2-1.el10_3               epel       690 k
 alsa-lib                              x86_64  1.2.16.1-1.el10                   appstream  547 k
 annobin-docs                          noarch  13.28-1.el10                      appstream   86 k
 annobin-plugin-gcc                    x86_64  13.28-1.el10                      appstream  697 k
 aribb24                               x86_64  1.0.3^20160216git5e9be27-1.el10_0 epel        40 k
 avahi-libs                            x86_64  0.9~rc2-3.el10                    baseos      67 k
 blosc                                 x86_64  1.21.6-4.el10_0                   epel        58 k
 bluez-libs                            x86_64  5.87+1.git30db66dc971b-1.el10     baseos      81 k
 brotli                                x86_64  1.1.0-8.el10                      appstream   19 k
 brotli-devel                          x86_64  1.1.0-8.el10                      appstream   33 k
 bzip2-devel                           x86_64  1.0.8-25.el10                     appstream  215 k
 cairo                                 x86_64  1.18.2-3.el10                     appstream  715 k
 cairo-devel                           x86_64  1.18.2-3.el10                     appstream  194 k
 cairo-gobject                         x86_64  1.18.2-3.el10                     appstream   16 k
 chrpath                               x86_64  0.16-25.el10                      baseos      31 k
 cjson                                 x86_64  1.7.19-1.el10_3                   epel        32 k
 clang-libs                            x86_64  22.1.8-1.el10                     appstream   28 M
 clang-resource-filesystem             x86_64  22.1.8-1.el10                     appstream   18 k
 cmake                                 x86_64  3.31.8-1.el10                     appstream   13 M
 cmake-data                            noarch  3.31.8-1.el10                     appstream  2.7 M
 cmake-filesystem                      x86_64  3.31.8-1.el10                     appstream   21 k
 cmake-rpm-macros                      noarch  3.31.8-1.el10                     appstream   12 k
 codec2                                x86_64  1.2.0-5.el10_0~bootstrap          epel       637 k
 cpp                                   x86_64  14.4.1-3.el10                     appstream   13 M
 cpuinfo                               x86_64  24.09.26-1.git1e83a2f.el10_1.1    epel        42 k
 cups-filesystem                       noarch  1:2.4.10-18.el10                  baseos      11 k
 cups-libs                             x86_64  1:2.4.10-18.el10                  baseos     260 k
 dbus                                  x86_64  1:1.14.10-6.el10                  baseos     3.1 k
 dbus-broker                           x86_64  36-4.el10                         baseos     174 k
 dbus-common                           noarch  1:1.14.10-6.el10                  baseos      13 k
 dbus-libs                             x86_64  1:1.14.10-6.el10                  baseos     155 k
 default-fonts-core-sans               noarch  4.1-3.el10                        baseos      30 k
 double-conversion                     x86_64  3.4.0-1.el10_2                    epel        51 k
 duktape                               x86_64  2.7.0-10.el10                     baseos     170 k
 emacs-filesystem                      noarch  1:29.4-13.el10                    baseos     8.3 k
 expat                                 x86_64  2.7.3-2.el10                      baseos     120 k
 fdk-aac-free                          x86_64  2.0.0-15.el10                     appstream  339 k
 fftw-libs-single                      x86_64  3.3.11-1.el10                     appstream  1.1 M
 flac-libs                             x86_64  1.4.3-6.el10                      appstream  265 k
 fontconfig                            x86_64  2.15.0-7.el10                     appstream  280 k
 fontconfig-devel                      x86_64  2.15.0-7.el10                     appstream  175 k
 fonts-filesystem                      noarch  1:2.0.5-18.el10                   baseos     8.8 k
 freeglut                              x86_64  3.4.0-9.el10                      appstream  147 k
 freetype                              x86_64  2.13.2-8.el10                     baseos     409 k
 fribidi                               x86_64  1.0.14-4.el10                     appstream   93 k
 game-music-emu                        x86_64  0.6.3-16.el10_0                   epel       153 k
 gcc-gfortran                          x86_64  14.4.1-3.el10                     appstream   14 M
 gcc-plugin-annobin                    x86_64  14.4.1-3.el10                     appstream   54 k
 gcc-toolset-15-binutils               x86_64  2.44-8.el10                       appstream  5.8 M
 gcc-toolset-15-gcc                    x86_64  15.2.1-8.el10                     appstream   52 M
 gcc-toolset-15-gcc-c++                x86_64  15.2.1-8.el10                     appstream   16 M
 gcc-toolset-15-libstdc++-devel        x86_64  15.2.1-8.el10                     appstream  3.7 M
 gcc-toolset-15-runtime                x86_64  15.0-11.el10                      appstream   12 k
 gdk-pixbuf2                           x86_64  2.42.12-5.el10                    appstream  497 k
 gettext                               x86_64  0.22.5-6.el10                     baseos     1.1 M
 gettext-envsubst                      x86_64  0.22.5-6.el10                     baseos      38 k
 gettext-libs                          x86_64  0.22.5-6.el10                     baseos     669 k
 gettext-runtime                       x86_64  0.22.5-6.el10                     baseos     122 k
 giflib                                x86_64  5.2.1-25.el10                     appstream   52 k
 glib2                                 x86_64  2.80.4-22.el10                    baseos     3.0 M
 glib2-devel                           x86_64  2.80.4-22.el10                    appstream  1.5 M
 glibc-devel                           x86_64  2.39-137.el10                     appstream  583 k
 glx-utils                             x86_64  9.0.0-8.el10                      appstream   73 k
 gnutls                                x86_64  3.8.10-4.el10                     baseos     1.5 M
 google-noto-fonts-common              noarch  20240401-5.el10                   baseos      18 k
 google-noto-sans-vf-fonts             noarch  20240401-5.el10                   baseos     594 k
 graphene                              x86_64  1.10.6-10.el10                    appstream   62 k
 graphite2                             x86_64  1.3.14-17.el10                    baseos      96 k
 graphite2-devel                       x86_64  1.3.14-17.el10                    appstream   22 k
 groff-base                            x86_64  1.23.0-10.el10                    baseos     1.1 M
 gsm                                   x86_64  1.0.22-8.el10                     appstream   37 k
 gstreamer1                            x86_64  1.26.7-5.el10                     appstream  1.7 M
 gstreamer1-plugins-bad-free-libs      x86_64  1.26.7-9.el10                     appstream  1.0 M
 gstreamer1-plugins-base               x86_64  1.26.7-3.el10                     appstream  2.3 M
 harfbuzz                              x86_64  8.4.0-6.el10                      baseos     992 k
 harfbuzz-cairo                        x86_64  8.4.0-6.el10                      appstream   28 k
 harfbuzz-devel                        x86_64  8.4.0-6.el10                      appstream  453 k
 harfbuzz-icu                          x86_64  8.4.0-6.el10                      appstream   15 k
 hdf-libs                              x86_64  4.3.0-1.el10_0                    epel       292 k
 hdf5                                  x86_64  1.14.5-1.el10_0                   epel       2.1 M
 hdf5-devel                            x86_64  1.14.5-1.el10_0                   epel       1.4 M
 highway                               x86_64  1.3.0-1.el10_2                    epel       505 k
 hwdata                                noarch  0.379-10.10.el10                  baseos     1.7 M
 ilbc                                  x86_64  3.0.4-12.el10_0                   epel        54 k
 iso-codes                             noarch  4.16.0-6.el10                     appstream  3.7 M
 jasper-libs                           x86_64  4.1.0-5.el10                      appstream  163 k
 jbigkit-libs                          x86_64  2.1-31.el10                       appstream   54 k
 json-glib                             x86_64  1.8.0-5.el10                      baseos     168 k
 kernel-headers                        x86_64  6.12.0-264.el10                   appstream  3.3 M
 keyutils-libs-devel                   x86_64  1.6.3-5.el10                      appstream   61 k
 krb5-devel                            x86_64  1.21.3-11.el10                    appstream  143 k
 lame-libs                             x86_64  3.100-19.el10                     appstream  339 k
 lcms2                                 x86_64  2.16-6.el10                       appstream  182 k
 libGLEW                               x86_64  2.2.0-9.el10_0                    epel       176 k
 libICE                                x86_64  1.1.1-5.el10                      appstream   75 k
 libSM                                 x86_64  1.2.4-5.el10                      appstream   44 k
 libX11                                x86_64  1.8.13-1.el10                     appstream  651 k
 libX11-common                         noarch  1.8.13-1.el10                     appstream  198 k
 libX11-devel                          x86_64  1.8.13-1.el10                     appstream  1.1 M
 libX11-xcb                            x86_64  1.8.13-1.el10                     appstream   11 k
 libXau                                x86_64  1.0.11-8.el10                     appstream   33 k
 libXau-devel                          x86_64  1.0.11-8.el10                     appstream   15 k
 libXcomposite                         x86_64  0.4.6-5.el10                      appstream   25 k
 libXdamage                            x86_64  1.1.6-5.el10                      appstream   24 k
 libXext                               x86_64  1.3.6-3.el10                      appstream   40 k
 libXext-devel                         x86_64  1.3.6-3.el10                      appstream   87 k
 libXfixes                             x86_64  6.0.1-5.el10                      appstream   20 k
 libXft                                x86_64  2.3.8-8.el10                      appstream   73 k
 libXi                                 x86_64  1.8.1-7.el10                      appstream   41 k
 libXrandr                             x86_64  1.5.4-5.el10                      appstream   29 k
 libXrender                            x86_64  0.9.11-8.el10                     appstream   29 k
 libXrender-devel                      x86_64  0.9.11-8.el10                     appstream   20 k
 libXtst                               x86_64  1.2.4-8.el10                      appstream   22 k
 libXv                                 x86_64  1.0.12-5.el10                     appstream   20 k
 libXxf86vm                            x86_64  1.1.5-8.el10                      appstream   19 k
 libaec                                x86_64  1.1.7-1.el10_3                    epel        37 k
 libaec-devel                          x86_64  1.1.7-1.el10_3                    epel        15 k
 libaom                                x86_64  3.13.1-1.el10_2                   epel       1.8 M
 libaribcaption                        x86_64  1.1.1-1.el10_0                    epel       110 k
 libasyncns                            x86_64  0.8-30.el10                       appstream   31 k
 libavcodec-free                       x86_64  7.1.5-2.el10_3                    epel       4.3 M
 libavformat-free                      x86_64  7.1.5-2.el10_3                    epel       1.1 M
 libavutil-free                        x86_64  7.1.5-2.el10_3                    epel       359 k
 libblkid-devel                        x86_64  2.40.2-20.el10                    appstream   25 k
 libbluray                             x86_64  1.3.4-7.el10_0                    epel       175 k
 libcom_err-devel                      x86_64  1.47.1-5.el10                     appstream   16 k
 libcurl-devel                         x86_64  8.12.1-6.el10                     appstream  945 k
 libdatrie                             x86_64  0.2.13-11.el10                    appstream   33 k
 libdav1d                              x86_64  1.5.3-1.el10_3                    epel       638 k
 libdrm                                x86_64  2.4.128-1.el10                    baseos     164 k
 libdrm-devel                          x86_64  2.4.128-1.el10                    appstream  184 k
 libdvdnav                             x86_64  6.1.1-10.el10                     appstream   57 k
 libdvdread                            x86_64  6.1.3-9.el10                      appstream   73 k
 libedit                               x86_64  3.1-52.20230828cvs.el10           baseos     106 k
 libevdev                              x86_64  1.13.1-6.el10                     appstream   39 k
 libffi-devel                          x86_64  3.4.4-10.el10                     appstream   29 k
 libgcrypt                             x86_64  1.11.0-7.el10                     baseos     586 k
 libgfortran                           x86_64  14.4.1-3.el10                     baseos     813 k
 libglvnd                              x86_64  1:1.7.0-7.el10                    appstream  116 k
 libglvnd-core-devel                   x86_64  1:1.7.0-7.el10                    appstream   18 k
 libglvnd-devel                        x86_64  1:1.7.0-7.el10                    appstream  163 k
 libglvnd-egl                          x86_64  1:1.7.0-7.el10                    appstream   37 k
 libglvnd-gles                         x86_64  1:1.7.0-7.el10                    appstream   31 k
 libglvnd-glx                          x86_64  1:1.7.0-7.el10                    appstream  132 k
 libglvnd-opengl                       x86_64  1:1.7.0-7.el10                    appstream   39 k
 libgpg-error                          x86_64  1.50-2.el10                       baseos     236 k
 libgudev                              x86_64  238-7.el10                        baseos      36 k
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 openssl-devel                         x86_64  1:3.5.7-3.el10                    appstream  4.2 M
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 orc                                   x86_64  0.4.39-2.el10                     appstream  229 k
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 perl-AutoLoader                       noarch  5.74-514.el10                     appstream   22 k
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 perl-Digest-MD5                       x86_64  2.59-6.el10                       baseos      37 k
 perl-DynaLoader                       x86_64  1.56-514.el10                     appstream   27 k
 perl-Encode                           x86_64  4:3.21-511.el10                   baseos     1.1 M
 perl-English                          noarch  1.11-514.el10                     appstream   14 k
 perl-Errno                            x86_64  1.38-514.el10                     appstream   16 k
 perl-Exporter                         noarch  5.78-511.el10                     baseos      32 k
 perl-Fcntl                            x86_64  1.18-514.el10                     appstream   30 k
 perl-File-Basename                    noarch  2.86-514.el10                     appstream   18 k
 perl-File-Find                        noarch  1.44-514.el10                     appstream   26 k
 perl-File-Path                        noarch  2.18-512.el10                     appstream   35 k
 perl-File-Temp                        noarch  1:0.231.100-512.el10              baseos      60 k
 perl-File-stat                        noarch  1.14-514.el10                     appstream   18 k
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 perl-Getopt-Long                      noarch  1:2.58-3.el10                     baseos      65 k
 perl-Getopt-Std                       noarch  1.14-514.el10                     appstream   16 k
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 perl-IO-Socket-IP                     noarch  0.42-512.el10                     baseos      43 k
 perl-IO-Socket-SSL                    noarch  2.085-3.el10                      baseos     227 k
 perl-IPC-Open3                        noarch  1.22-514.el10                     appstream   23 k
 perl-MIME-Base64                      x86_64  3.16-511.el10                     baseos      31 k
 perl-Mozilla-CA                       noarch  20231213-5.el10                   baseos      15 k
 perl-Net-SSLeay                       x86_64  1.94-9.el10                       appstream  377 k
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 perl-Pod-Escapes                      noarch  1:1.07-511.el10                   baseos      21 k
 perl-Pod-Perldoc                      noarch  3.28.01-512.el10                  baseos      84 k
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 perl-Pod-Usage                        noarch  4:2.03-511.el10                   baseos      41 k
 perl-Scalar-List-Utils                x86_64  5:1.63-511.el10                   baseos      74 k
 perl-SelectSaver                      noarch  1.02-514.el10                     appstream   12 k
 perl-Socket                           x86_64  4:2.038-511.el10                  baseos      56 k
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 perl-Term-Cap                         noarch  1.18-511.el10                     baseos      23 k
 perl-Text-ParseWords                  noarch  3.31-511.el10                     baseos      17 k
 perl-Text-Tabs+Wrap                   noarch  2024.001-511.el10                 baseos      23 k
 perl-Time-Local                       noarch  2:1.350-511.el10                  baseos      35 k
 perl-URI                              noarch  5.27-3.el10                       baseos     134 k
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 perl-interpreter                      x86_64  4:5.40.2-514.el10                 appstream   73 k
 perl-libnet                           noarch  3.15-512.el10                     baseos     127 k
 perl-libs                             x86_64  4:5.40.2-514.el10                 appstream  2.4 M
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 perl-mro                              x86_64  1.29-514.el10                     appstream   31 k
 perl-overload                         noarch  1.37-514.el10                     appstream   46 k
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 python3-iniconfig                     noarch  1.1.1-18.el10                     crb         19 k
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 python3-packaging                     noarch  24.2-2.el10                       baseos     153 k
 python3-pip-wheel                     noarch  23.3.2-11.el10                    baseos     1.5 M
 python3-pluggy                        noarch  1.3.0-5.el10                      crb         53 k
 python3-pyqt5-sip                     x86_64  12.15.0-3.el10_1                  epel        72 k
 python3-pyside6                       x86_64  6.10.1-4.el10_3                   epel        10 M
 python3-qt5                           x86_64  5.15.11-8.el10_2                  epel       1.1 M
 python3-qt5-base                      x86_64  5.15.11-8.el10_2                  epel       3.0 M
 python3-rpm-generators                noarch  14-12.el10                        appstream   30 k
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 python3-shiboken6-devel               x86_64  6.10.1-4.el10_3                   epel       1.1 M
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 qt5-qtbase                            x86_64  5.15.18-1.el10_2                  epel       3.3 M
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 qt5-qtbase-devel                      x86_64  5.15.18-1.el10_2                  epel       3.2 M
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 qt5-qtdeclarative                     x86_64  5.15.18-1.el10_2                  epel       4.2 M
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 qt5-qtmultimedia                      x86_64  5.15.18-1.el10_2                  epel       795 k
 qt5-qtsensors                         x86_64  5.15.18-1.el10_2                  epel       220 k
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 qt5-qtsvg                             x86_64  5.15.18-1.el10_2                  epel       188 k
 qt5-qttools-common                    noarch  5.15.18-2.el10_3                  epel        11 k
 qt5-qttools-libs-designer             x86_64  5.15.18-2.el10_3                  epel       2.7 M
 qt5-qttools-libs-help                 x86_64  5.15.18-2.el10_3                  epel       156 k
 qt5-qtwebchannel                      x86_64  5.15.18-1.el10_2                  epel       101 k
 qt5-qtwebsockets                      x86_64  5.15.18-1.el10_2                  epel        86 k
 qt5-qtx11extras                       x86_64  5.15.18-1.el10_2                  epel        34 k
 qt5-qtxmlpatterns                     x86_64  5.15.18-1.el10_2                  epel       985 k
 qt5-rpm-macros                        noarch  5.15.18-1.el10_2                  epel        10 k
 qt6-assistant                         x86_64  6.10.1-3.el10                     appstream  597 k
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 qt6-qt3d                              x86_64  6.10.1-1.el10                     appstream  3.8 M
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 qt6-qtbase-common                     noarch  6.10.1-1.el10                     appstream  9.8 k
 qt6-qtbase-devel                      x86_64  6.10.1-1.el10                     appstream  4.3 M
 qt6-qtbase-gui                        x86_64  6.10.1-1.el10                     appstream  8.5 M
 qt6-qtbase-mysql                      x86_64  6.10.1-1.el10                     appstream   51 k
 qt6-qtbase-odbc                       x86_64  6.10.1-1.el10                     appstream   63 k
 qt6-qtbase-postgresql                 x86_64  6.10.1-1.el10                     appstream   58 k
 qt6-qtcharts                          x86_64  6.10.1-1.el10                     appstream  858 k
 qt6-qtconnectivity                    x86_64  6.10.1-1.el10                     appstream  518 k
 qt6-qtdatavis3d                       x86_64  6.10.1-1.el10                     appstream  653 k
 qt6-qtdeclarative                     x86_64  6.10.1-2.el10                     appstream   14 M
 qt6-qtdeclarative-devel               x86_64  6.10.1-2.el10                     appstream  4.7 M
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 qt6-qthttpserver                      x86_64  6.10.1-1.el10_2                   epel       113 k
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 qt6-qtnetworkauth                     x86_64  6.10.1-1.el10                     appstream  126 k
 qt6-qtpdf                             x86_64  6.10.1-2.1.el10_2                 epel       8.4 M
 qt6-qtpositioning                     x86_64  6.10.1-1.el10                     appstream  454 k
 qt6-qtquick3d                         x86_64  6.10.1-1.el10                     appstream  5.4 M
 qt6-qtquicktimeline                   x86_64  6.10.1-1.el10                     appstream   96 k
 qt6-qtremoteobjects                   x86_64  6.10.1-1.el10                     appstream  515 k
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 qt6-qttools-libs-designer             x86_64  6.10.1-3.el10                     appstream  3.0 M
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 qt6-qtwebview                         x86_64  6.10.1-1.el10_2                   epel        90 k
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 rav1e-libs                            x86_64  0.8.1-2.el10_2                    epel       1.1 M
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 rpm-plugin-syslog                     x86_64  4.19.1.1-25.el10                  baseos      18 k
 rsvg-pixbuf-loader                    x86_64  2.57.1-9.el10                     appstream   16 k
 samba-client-libs                     x86_64  4.24.5-101.el10                   baseos     3.1 M
 samba-common                          noarch  4.24.5-101.el10                   baseos     184 k
 samba-core-libs                       x86_64  4.24.5-101.el10                   baseos     474 k
 samba-ndr-libs                        x86_64  4.24.5-101.el10                   baseos     1.2 M
 shared-mime-info                      x86_64  2.3-8.el10                        baseos     592 k
 shiboken6                             x86_64  6.10.1-4.el10_3                   epel        44 k
 snappy                                x86_64  1.1.10-7.el10                     baseos      38 k
 soxr                                  x86_64  0.1.3-17.el10_0                   epel        83 k
 speex                                 x86_64  1.2.0-19.el10                     appstream   69 k
 spirv-tools-libs                      x86_64  2026.1-1.el10                     appstream  1.7 M
 srt-libs                              x86_64  1.5.4-0.rc0.el10_0.1              epel       390 k
 svt-av1-libs                          x86_64  2.3.0-1.el10_0                    epel       2.0 M
 sysprof-capture-devel                 x86_64  47.2-1.el10                       appstream   56 k
 systemd                               x86_64  257-33.el10                       baseos     5.8 M
 systemd-pam                           x86_64  257-33.el10                       baseos     336 k
 systemd-rpm-macros                    noarch  257-33.el10                       baseos      54 k
 twolame-libs                          x86_64  0.4.0-6.el10                      appstream   70 k
 tzdata                                noarch  2026c-1.el10                      baseos     904 k
 unixODBC                              x86_64  2.3.12-6.el10                     appstream  496 k
 vim-filesystem                        noarch  2:9.1.083-22.el10                 baseos      16 k
 vo-amrwbenc                           x86_64  0.1.3-21.el10_0                   epel        80 k
 vulkan-headers                        noarch  1.4.341.0-1.el10                  appstream  1.7 M
 vulkan-loader                         x86_64  1.4.341.0-1.el10                  appstream  164 k
 vulkan-loader-devel                   x86_64  1.4.341.0-1.el10                  appstream   11 k
 webrtc-audio-processing               x86_64  1.3-5.el10                        appstream  527 k
 xcb-util                              x86_64  0.4.1-7.el10                      appstream   19 k
 xcb-util-cursor                       x86_64  0.1.4-6.el10                      appstream   20 k
 xcb-util-image                        x86_64  0.4.1-7.el10                      appstream   20 k
 xcb-util-keysyms                      x86_64  0.4.1-7.el10                      appstream   15 k
 xcb-util-renderutil                   x86_64  0.3.10-7.el10                     appstream   18 k
 xcb-util-wm                           x86_64  0.4.2-7.el10                      appstream   32 k
 xkeyboard-config                      noarch  2.41-3.el10                       appstream  1.0 M
 xml-common                            noarch  0.6.3-65.el10                     appstream   32 k
 xorg-x11-proto-devel                  noarch  2024.1-3.el10                     appstream  311 k
 xvidcore                              x86_64  1.3.7-12.el10_0                   epel       269 k
 xz-devel                              x86_64  1:5.6.2-5.el10                    appstream   63 k
 zeromq                                x86_64  4.3.5-18.el10_0                   epel       451 k
 zlib-ng-compat-devel                  x86_64  2.2.3-3.el10                      appstream   36 k
 zvbi                                  x86_64  0.2.42-1.el10_0                   epel       427 k

Transaction Summary
=================================================================================================
Install  479 Packages

Total download size: 594 M
Installed size: 2.0 G
Downloading Packages:
(1/479): avahi-libs-0.9~rc2-3.el10.x86_64.rpm   1.2 MB/s |  67 kB     00:00    
(2/479): bluez-libs-5.87+1.git30db66dc971b-1.el 1.4 MB/s |  81 kB     00:00    
(3/479): cups-filesystem-2.4.10-18.el10.noarch. 400 kB/s |  11 kB     00:00    
(4/479): cups-libs-2.4.10-18.el10.x86_64.rpm    8.4 MB/s | 260 kB     00:00    
(5/479): chrpath-0.16-25.el10.x86_64.rpm        537 kB/s |  31 kB     00:00    
(6/479): dbus-1.14.10-6.el10.x86_64.rpm         113 kB/s | 3.1 kB     00:00    
(7/479): dbus-broker-36-4.el10.x86_64.rpm       3.5 MB/s | 174 kB     00:00    
(8/479): dbus-common-1.14.10-6.el10.noarch.rpm  453 kB/s |  13 kB     00:00    
(9/479): dbus-libs-1.14.10-6.el10.x86_64.rpm    4.9 MB/s | 155 kB     00:00    
(10/479): default-fonts-core-sans-4.1-3.el10.no 1.1 MB/s |  30 kB     00:00    
(11/479): duktape-2.7.0-10.el10.x86_64.rpm      7.1 MB/s | 170 kB     00:00    
(12/479): emacs-filesystem-29.4-13.el10.noarch. 292 kB/s | 8.3 kB     00:00    
(13/479): expat-2.7.3-2.el10.x86_64.rpm         4.8 MB/s | 120 kB     00:00    
(14/479): fonts-filesystem-2.0.5-18.el10.noarch 377 kB/s | 8.8 kB     00:00    
(15/479): freetype-2.13.2-8.el10.x86_64.rpm      16 MB/s | 409 kB     00:00    
(16/479): mmtf-cpp-devel-1.1.0-1.el10.x86_64.rp 112 kB/s |  30 kB     00:00    
(17/479): gettext-0.22.5-6.el10.x86_64.rpm       27 MB/s | 1.1 MB     00:00    
(18/479): gettext-envsubst-0.22.5-6.el10.x86_64 1.3 MB/s |  38 kB     00:00    
(19/479): gettext-libs-0.22.5-6.el10.x86_64.rpm  22 MB/s | 669 kB     00:00    
(20/479): gettext-runtime-0.22.5-6.el10.x86_64. 3.8 MB/s | 122 kB     00:00    
(21/479): gnutls-3.8.10-4.el10.x86_64.rpm        45 MB/s | 1.5 MB     00:00    
(22/479): glib2-2.80.4-22.el10.x86_64.rpm        62 MB/s | 3.0 MB     00:00    
(23/479): google-noto-fonts-common-20240401-5.e 629 kB/s |  18 kB     00:00    
(24/479): google-noto-sans-vf-fonts-20240401-5.  18 MB/s | 594 kB     00:00    
(25/479): graphite2-1.3.14-17.el10.x86_64.rpm   3.8 MB/s |  96 kB     00:00    
(26/479): groff-base-1.23.0-10.el10.x86_64.rpm   32 MB/s | 1.1 MB     00:00    
(27/479): harfbuzz-8.4.0-6.el10.x86_64.rpm       29 MB/s | 992 kB     00:00    
(28/479): json-glib-1.8.0-5.el10.x86_64.rpm     5.8 MB/s | 168 kB     00:00    
(29/479): hwdata-0.379-10.10.el10.noarch.rpm     30 MB/s | 1.7 MB     00:00    
(30/479): libdrm-2.4.128-1.el10.x86_64.rpm      5.6 MB/s | 164 kB     00:00    
(31/479): libedit-3.1-52.20230828cvs.el10.x86_6 3.5 MB/s | 106 kB     00:00    
(32/479): libgcrypt-1.11.0-7.el10.x86_64.rpm     19 MB/s | 586 kB     00:00    
(33/479): libgfortran-14.4.1-3.el10.x86_64.rpm   25 MB/s | 813 kB     00:00    
(34/479): libgpg-error-1.50-2.el10.x86_64.rpm   6.6 MB/s | 236 kB     00:00    
(35/479): libgudev-238-7.el10.x86_64.rpm        1.2 MB/s |  36 kB     00:00    
(36/479): libkadm5-1.21.3-11.el10.x86_64.rpm    2.7 MB/s |  76 kB     00:00    
(37/479): libldb-4.24.5-101.el10.x86_64.rpm     6.0 MB/s | 185 kB     00:00    
(38/479): libpciaccess-0.16-16.el10.x86_64.rpm  927 kB/s |  28 kB     00:00    
(39/479): libpng-1.6.40-13.el10.x86_64.rpm      4.0 MB/s | 120 kB     00:00    
(40/479): libicu-74.2-5.el10.x86_64.rpm          99 MB/s |  10 MB     00:00    
(41/479): libproxy-0.5.5-4.el10.x86_64.rpm      2.2 MB/s |  49 kB     00:00    
(42/479): libpq-16.11-3.el10.x86_64.rpm         7.8 MB/s | 254 kB     00:00    
(43/479): libseccomp-2.5.6-1.el10.x86_64.rpm    2.2 MB/s |  71 kB     00:00    
(44/479): libsmbclient-4.24.5-101.el10.x86_64.r 2.4 MB/s |  76 kB     00:00    
(45/479): libquadmath-14.4.1-3.el10.x86_64.rpm  5.7 MB/s | 201 kB     00:00    
(46/479): libtalloc-2.4.4-100.el10.x86_64.rpm   1.4 MB/s |  33 kB     00:00    
(47/479): libtdb-1.4.15-100.el10.x86_64.rpm     2.2 MB/s |  54 kB     00:00    
(48/479): libtevent-0.17.1-100.el10.x86_64.rpm  1.9 MB/s |  51 kB     00:00    
(49/479): libtirpc-1.3.5-1.el10.x86_64.rpm      3.2 MB/s |  95 kB     00:00    
(50/479): libusb1-1.0.30-1.el10.x86_64.rpm      2.7 MB/s |  77 kB     00:00    
(51/479): libwbclient-4.24.5-101.el10.x86_64.rp 1.0 MB/s |  44 kB     00:00    
(52/479): lmdb-libs-0.9.32-4.el10.x86_64.rpm    2.3 MB/s |  62 kB     00:00    
(53/479): make-4.4.1-9.el10.x86_64.rpm           16 MB/s | 587 kB     00:00    
(54/479): mariadb-connector-c-3.4.4-1.el10.x86_ 5.7 MB/s | 211 kB     00:00    
(55/479): mariadb-connector-c-config-3.4.4-1.el 325 kB/s | 9.9 kB     00:00    
(56/479): mpdecimal-2.5.1-12.el10.x86_64.rpm    2.6 MB/s |  90 kB     00:00    
(57/479): ncurses-6.4-15.20240127.el10.x86_64.r  11 MB/s | 420 kB     00:00    
(58/479): nettle-3.10.1-1.el10.x86_64.rpm        14 MB/s | 559 kB     00:00    
(59/479): ocl-icd-2.3.2-8.el10.x86_64.rpm       1.7 MB/s |  67 kB     00:00    
(60/479): perl-Carp-1.54-511.el10.noarch.rpm    1.0 MB/s |  30 kB     00:00    
(61/479): perl-Data-Dumper-2.189-512.el10.x86_6 1.8 MB/s |  57 kB     00:00    
(62/479): perl-Digest-1.20-511.el10.noarch.rpm  941 kB/s |  26 kB     00:00    
(63/479): perl-Digest-MD5-2.59-6.el10.x86_64.rp 1.2 MB/s |  37 kB     00:00    
(64/479): perl-Encode-3.21-511.el10.x86_64.rpm   24 MB/s | 1.1 MB     00:00    
(65/479): perl-Exporter-5.78-511.el10.noarch.rp 890 kB/s |  32 kB     00:00    
(66/479): perl-File-Temp-0.231.100-512.el10.noa 1.4 MB/s |  60 kB     00:00    
(67/479): perl-HTTP-Tiny-0.088-512.el10.noarch. 1.4 MB/s |  57 kB     00:00    
(68/479): perl-Getopt-Long-2.58-3.el10.noarch.r 1.2 MB/s |  65 kB     00:00    
(69/479): perl-IO-Socket-IP-0.42-512.el10.noarc 786 kB/s |  43 kB     00:00    
(70/479): perl-IO-Socket-SSL-2.085-3.el10.noarc 6.3 MB/s | 227 kB     00:00    
(71/479): perl-MIME-Base64-3.16-511.el10.x86_64 770 kB/s |  31 kB     00:00    
(72/479): perl-Mozilla-CA-20231213-5.el10.noarc 431 kB/s |  15 kB     00:00    
(73/479): perl-PathTools-3.91-512.el10.x86_64.r 2.3 MB/s |  85 kB     00:00    
(74/479): perl-Pod-Escapes-1.07-511.el10.noarch 623 kB/s |  21 kB     00:00    
(75/479): perl-Pod-Perldoc-3.28.01-512.el10.noa 2.4 MB/s |  84 kB     00:00    
(76/479): perl-Pod-Simple-3.45-511.el10.noarch. 5.1 MB/s | 218 kB     00:00    
(77/479): perl-Pod-Usage-2.03-511.el10.noarch.r 1.1 MB/s |  41 kB     00:00    
(78/479): perl-Scalar-List-Utils-1.63-511.el10. 2.8 MB/s |  74 kB     00:00    
(79/479): perl-Socket-2.038-511.el10.x86_64.rpm 1.9 MB/s |  56 kB     00:00    
(80/479): perl-Storable-3.32-511.el10.x86_64.rp 2.8 MB/s |  99 kB     00:00    
(81/479): perl-Term-ANSIColor-5.01-512.el10.noa 1.5 MB/s |  49 kB     00:00    
(82/479): perl-Term-Cap-1.18-511.el10.noarch.rp 552 kB/s |  23 kB     00:00    
(83/479): perl-Text-Tabs+Wrap-2024.001-511.el10 456 kB/s |  23 kB     00:00    
(84/479): perl-Text-ParseWords-3.31-511.el10.no 199 kB/s |  17 kB     00:00    
(85/479): perl-Time-Local-1.350-511.el10.noarch 560 kB/s |  35 kB     00:00    
(86/479): perl-URI-5.27-3.el10.noarch.rpm       1.8 MB/s | 134 kB     00:00    
(87/479): perl-libnet-3.15-512.el10.noarch.rpm  2.0 MB/s | 127 kB     00:00    
(88/479): perl-constant-1.33-512.el10.noarch.rp 331 kB/s |  24 kB     00:00    
(89/479): perl-parent-0.241-512.el10.noarch.rpm 311 kB/s |  16 kB     00:00    
(90/479): perl-podlators-5.01-511.el10.noarch.r 2.3 MB/s | 124 kB     00:00    
(91/479): python3-3.12.13-3.el10.x86_64.rpm     525 kB/s |  27 kB     00:00    
(92/479): python3-dbus-1.3.2-8.el10.x86_64.rpm  2.1 MB/s | 158 kB     00:00    
(93/479): python3-packaging-24.2-2.el10.noarch. 2.4 MB/s | 153 kB     00:00    
(94/479): python3-pip-wheel-23.3.2-11.el10.noar  20 MB/s | 1.5 MB     00:00    
(95/479): redhat-text-vf-fonts-4.1.0-1.el10.noa 7.4 MB/s | 354 kB     00:00    
(96/479): rpm-plugin-syslog-4.19.1.1-25.el10.x8 338 kB/s |  18 kB     00:00    
(97/479): python3-libs-3.12.13-3.el10.x86_64.rp  39 MB/s | 9.4 MB     00:00    
(98/479): samba-client-libs-4.24.5-101.el10.x86  24 MB/s | 3.1 MB     00:00    
(99/479): samba-common-4.24.5-101.el10.noarch.r 2.3 MB/s | 184 kB     00:00    
(100/479): samba-core-libs-4.24.5-101.el10.x86_  10 MB/s | 474 kB     00:00    
(101/479): shared-mime-info-2.3-8.el10.x86_64.r  13 MB/s | 592 kB     00:00    
(102/479): samba-ndr-libs-4.24.5-101.el10.x86_6  18 MB/s | 1.2 MB     00:00    
(103/479): snappy-1.1.10-7.el10.x86_64.rpm      931 kB/s |  38 kB     00:00    
(104/479): systemd-pam-257-33.el10.x86_64.rpm   7.1 MB/s | 336 kB     00:00    
(105/479): systemd-rpm-macros-257-33.el10.noarc 1.4 MB/s |  54 kB     00:00    
(106/479): vim-filesystem-9.1.083-22.el10.noarc 384 kB/s |  16 kB     00:00    
(107/479): tzdata-2026c-1.el10.noarch.rpm        12 MB/s | 904 kB     00:00    
(108/479): systemd-257-33.el10.x86_64.rpm        29 MB/s | 5.8 MB     00:00    
(109/479): annobin-docs-13.28-1.el10.noarch.rpm 1.3 MB/s |  86 kB     00:00    
(110/479): alsa-lib-1.2.16.1-1.el10.x86_64.rpm  5.6 MB/s | 547 kB     00:00    
(111/479): annobin-plugin-gcc-13.28-1.el10.x86_  10 MB/s | 697 kB     00:00    
(112/479): brotli-devel-1.1.0-8.el10.x86_64.rpm 561 kB/s |  33 kB     00:00    
(113/479): brotli-1.1.0-8.el10.x86_64.rpm       259 kB/s |  19 kB     00:00    
(114/479): bzip2-devel-1.0.8-25.el10.x86_64.rpm 3.7 MB/s | 215 kB     00:00    
(115/479): cairo-devel-1.18.2-3.el10.x86_64.rpm 2.4 MB/s | 194 kB     00:00    
(116/479): cairo-gobject-1.18.2-3.el10.x86_64.r 143 kB/s |  16 kB     00:00    
(117/479): cairo-1.18.2-3.el10.x86_64.rpm       4.1 MB/s | 715 kB     00:00    
(118/479): clang-resource-filesystem-22.1.8-1.e 267 kB/s |  18 kB     00:00    
(119/479): cmake-data-3.31.8-1.el10.noarch.rpm   12 MB/s | 2.7 MB     00:00    
(120/479): cmake-filesystem-3.31.8-1.el10.x86_6 223 kB/s |  21 kB     00:00    
(121/479): cmake-rpm-macros-3.31.8-1.el10.noarc 154 kB/s |  12 kB     00:00    
(122/479): cmake-3.31.8-1.el10.x86_64.rpm        19 MB/s |  13 MB     00:00    
(123/479): desktop-file-utils-0.26-15.el10.x86_ 655 kB/s |  70 kB     00:00    
(124/479): fdk-aac-free-2.0.0-15.el10.x86_64.rp 3.8 MB/s | 339 kB     00:00    
(125/479): fftw-libs-single-3.3.11-1.el10.x86_6 7.2 MB/s | 1.1 MB     00:00    
(126/479): flac-libs-1.4.3-6.el10.x86_64.rpm    3.1 MB/s | 265 kB     00:00    
(127/479): fontconfig-2.15.0-7.el10.x86_64.rpm  2.9 MB/s | 280 kB     00:00    
(128/479): cpp-14.4.1-3.el10.x86_64.rpm          16 MB/s |  13 MB     00:00    
(129/479): clang-libs-22.1.8-1.el10.x86_64.rpm   21 MB/s |  28 MB     00:01    
(130/479): fontconfig-devel-2.15.0-7.el10.x86_6 2.1 MB/s | 175 kB     00:00    
(131/479): freeglut-3.4.0-9.el10.x86_64.rpm     2.3 MB/s | 147 kB     00:00    
(132/479): fribidi-1.0.14-4.el10.x86_64.rpm     1.3 MB/s |  93 kB     00:00    
(133/479): freetype-devel-2.13.2-8.el10.x86_64. 8.1 MB/s | 966 kB     00:00    
(134/479): freeglut-devel-3.4.0-9.el10.x86_64.r 1.6 MB/s | 964 kB     00:00    
(135/479): gcc-c++-14.4.1-3.el10.x86_64.rpm      29 MB/s |  15 MB     00:00    
(136/479): gcc-plugin-annobin-14.4.1-3.el10.x86 927 kB/s |  54 kB     00:00    
(137/479): gcc-toolset-15-binutils-2.44-8.el10.  41 MB/s | 5.8 MB     00:00    
(138/479): gcc-14.4.1-3.el10.x86_64.rpm          44 MB/s |  38 MB     00:00    
(139/479): gcc-toolset-15-gcc-c++-15.2.1-8.el10  49 MB/s |  16 MB     00:00    
(140/479): gcc-gfortran-14.4.1-3.el10.x86_64.rp  19 MB/s |  14 MB     00:00    
(141/479): gcc-toolset-15-runtime-15.0-11.el10. 256 kB/s |  12 kB     00:00    
(142/479): gcc-toolset-15-libstdc++-devel-15.2.  35 MB/s | 3.7 MB     00:00    
(143/479): gdk-pixbuf2-2.42.12-5.el10.x86_64.rp 8.6 MB/s | 497 kB     00:00    
(144/479): giflib-5.2.1-25.el10.x86_64.rpm      1.4 MB/s |  52 kB     00:00    
(145/479): glib2-devel-2.80.4-22.el10.x86_64.rp  23 MB/s | 1.5 MB     00:00    
(146/479): glibc-devel-2.39-137.el10.x86_64.rpm 8.9 MB/s | 583 kB     00:00    
(147/479): graphene-1.10.6-10.el10.x86_64.rpm   1.3 MB/s |  62 kB     00:00    
(148/479): glx-utils-9.0.0-8.el10.x86_64.rpm    1.3 MB/s |  73 kB     00:00    
(149/479): graphite2-devel-1.3.14-17.el10.x86_6 430 kB/s |  22 kB     00:00    
(150/479): gsm-1.0.22-8.el10.x86_64.rpm         592 kB/s |  37 kB     00:00    
(151/479): gstreamer1-1.26.7-5.el10.x86_64.rpm   15 MB/s | 1.7 MB     00:00    
(152/479): gstreamer1-plugins-bad-free-libs-1.2 9.1 MB/s | 1.0 MB     00:00    
(153/479): harfbuzz-cairo-8.4.0-6.el10.x86_64.r 412 kB/s |  28 kB     00:00    
(154/479): harfbuzz-devel-8.4.0-6.el10.x86_64.r 6.6 MB/s | 453 kB     00:00    
(155/479): gstreamer1-plugins-base-1.26.7-3.el1  14 MB/s | 2.3 MB     00:00    
(156/479): harfbuzz-icu-8.4.0-6.el10.x86_64.rpm 287 kB/s |  15 kB     00:00    
(157/479): jasper-libs-4.1.0-5.el10.x86_64.rpm  2.5 MB/s | 163 kB     00:00    
(158/479): iso-codes-4.16.0-6.el10.noarch.rpm    34 MB/s | 3.7 MB     00:00    
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(406/479): libaom-3.13.1-1.el10_2.x86_64.rpm    9.1 MB/s | 1.8 MB     00:00    
(407/479): libavformat-free-7.1.5-2.el10_3.x86_ 6.3 MB/s | 1.1 MB     00:00    
(408/479): libavcodec-free-7.1.5-2.el10_3.x86_6  16 MB/s | 4.3 MB     00:00    
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(410/479): libbluray-1.3.4-7.el10_0.x86_64.rpm  2.3 MB/s | 175 kB     00:00    
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(421/479): libunwind-1.8.0-4.el10_0.x86_64.rpm  1.0 MB/s |  73 kB     00:00    
(422/479): libvmaf-3.0.0-2.el10_0.x86_64.rpm    2.8 MB/s | 194 kB     00:00    
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(424/479): mbedtls-3.6.7-1.el10_3.x86_64.rpm    5.7 MB/s | 518 kB     00:00    
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(428/479): netcdf-4.9.2-7.el10_0.x86_64.rpm     6.8 MB/s | 807 kB     00:00    
(429/479): noopenh264-0.1.0~openh264_2.4.1-2.el 296 kB/s |  22 kB     00:00    
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(433/479): pyside6-tools-6.10.1-4.el10_3.x86_64 813 kB/s |  60 kB     00:00    
(434/479): python-qt5-rpm-macros-5.15.11-8.el10 119 kB/s | 8.8 kB     00:00    
(435/479): python3-olefile-0.47-5.el10_0.noarch 1.0 MB/s |  73 kB     00:00    
(436/479): python3-pillow-11.0.0-1.el10_0.x86_6  12 MB/s | 942 kB     00:00    
(437/479): python3-pyqt5-sip-12.15.0-3.el10_1.x 1.0 MB/s |  72 kB     00:00    
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(440/479): python3-qt5-base-5.15.11-8.el10_2.x8  24 MB/s | 3.0 MB     00:00    
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(442/479): python3-qt5-devel-5.15.11-8.el10_2.x 3.9 MB/s | 392 kB     00:00    
(443/479): python3-shiboken6-6.10.1-4.el10_3.x8 4.0 MB/s | 297 kB     00:00    
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(451/479): qt5-qtdeclarative-5.15.18-1.el10_2.x  40 MB/s | 4.2 MB     00:00    
(452/479): qt5-qtmultimedia-5.15.18-1.el10_2.x8 6.9 MB/s | 795 kB     00:00    
(453/479): qt5-qtlocation-5.15.18-1.el10_2.x86_  21 MB/s | 3.2 MB     00:00    
(454/479): qt5-qtsensors-5.15.18-1.el10_2.x86_6 2.1 MB/s | 220 kB     00:00    
(455/479): qt5-qtserialport-5.15.18-1.el10_2.x8 950 kB/s |  65 kB     00:00    
(456/479): qt5-qtsvg-5.15.18-1.el10_2.x86_64.rp 2.6 MB/s | 188 kB     00:00    
(457/479): qt5-qttools-common-5.15.18-2.el10_3. 155 kB/s |  11 kB     00:00    
(458/479): qt5-qttools-libs-designer-5.15.18-2.  31 MB/s | 2.7 MB     00:00    
(459/479): qt5-qttools-libs-help-5.15.18-2.el10 2.0 MB/s | 156 kB     00:00    
(460/479): qt5-qtwebchannel-5.15.18-1.el10_2.x8 1.3 MB/s | 101 kB     00:00    
(461/479): qt5-qtwebsockets-5.15.18-1.el10_2.x8 1.4 MB/s |  86 kB     00:00    
(462/479): qt5-qtx11extras-5.15.18-1.el10_2.x86 472 kB/s |  34 kB     00:00    
(463/479): qt5-qtxmlpatterns-5.15.18-1.el10_2.x  12 MB/s | 985 kB     00:00    
(464/479): qt5-rpm-macros-5.15.18-1.el10_2.noar 148 kB/s |  10 kB     00:00    
(465/479): qt6-qtgraphs-6.10.1-1.el10_2.x86_64. 9.5 MB/s | 973 kB     00:00    
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(468/479): qt6-qtwebview-6.10.1-1.el10_2.x86_64 886 kB/s |  90 kB     00:00    
(469/479): rav1e-libs-0.8.1-2.el10_2.x86_64.rpm  14 MB/s | 1.1 MB     00:00    
(470/479): re2-20251105-1.el10_2.x86_64.rpm     2.3 MB/s | 221 kB     00:00    
(471/479): qt6-qtwebengine-6.10.1-2.1.el10_2.x8 114 MB/s |  89 MB     00:00    
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(473/479): soxr-0.1.3-17.el10_0.x86_64.rpm      142 kB/s |  83 kB     00:00    
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(475/479): vo-amrwbenc-0.1.3-21.el10_0.x86_64.r 716 kB/s |  80 kB     00:00    
(476/479): srt-libs-1.5.4-0.rc0.el10_0.1.x86_64 2.9 MB/s | 390 kB     00:00    
(477/479): xvidcore-1.3.7-12.el10_0.x86_64.rpm  3.5 MB/s | 269 kB     00:00    
(478/479): zeromq-4.3.5-18.el10_0.x86_64.rpm    5.3 MB/s | 451 kB     00:00    
(479/479): zvbi-0.2.42-1.el10_0.x86_64.rpm      5.6 MB/s | 427 kB     00:00    
--------------------------------------------------------------------------------
Total                                            36 MB/s | 594 MB     00:16     
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  Installing       : harfbuzz-cairo-8.4.0-6.el10.x86_64                 363/479 
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  Installing       : pango-1.54.0-4.el10.x86_64                         365/479 
  Installing       : gstreamer1-plugins-base-1.26.7-3.el10.x86_64       366/479 
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  Installing       : qt6-qtbase-mysql-6.10.1-1.el10.x86_64              392/479 
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Creating group 'input' with GID 104.
Creating group 'kvm' with GID 36.
Creating group 'render' with GID 105.
Creating group 'sgx' with GID 106.
Creating group 'systemd-journal' with GID 190.
Creating group 'dbus' with GID 81.
Creating user 'dbus' (System Message Bus) with UID 81 and GID 81.

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  Installing       : qt6-qtbase-gui-6.10.1-1.el10.x86_64                410/479 
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  Installing       : qt6-qtsvg-6.10.1-1.el10.x86_64                     414/479 
  Installing       : qt6-qtdeclarative-6.10.1-2.el10.x86_64             415/479 
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  Installing       : qt6-qtwebchannel-6.10.1-1.el10.x86_64              418/479 
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  Installing       : qt6-qttools-libs-help-6.10.1-3.el10.x86_64         422/479 
  Installing       : qt6-assistant-6.10.1-3.el10.x86_64                 423/479 
  Installing       : qt6-linguist-6.10.1-3.el10.x86_64                  424/479 
  Installing       : qt6-qtwebview-6.10.1-1.el10_2.x86_64               425/479 
  Installing       : qt6-qttools-libs-designercomponents-6.10.1-3.el1   426/479 
  Installing       : qt6-designer-6.10.1-3.el10.x86_64                  427/479 
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  Installing       : qt6-qtcharts-6.10.1-1.el10.x86_64                  429/479 
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  Installing       : qt6-qtmultimedia-6.10.1-1.el10.x86_64              433/479 
  Installing       : qt6-qtspeech-6.10.1-1.el10.x86_64                  434/479 
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  Installing       : qt6-qtscxml-6.10.1-1.el10.x86_64                   437/479 
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  Installing       : python3-qt5-base-5.15.11-8.el10_2.x86_64           439/479 
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  Installing       : python3-qt5-5.15.11-8.el10_2.x86_64                451/479 
  Installing       : qt6-qtimageformats-6.10.1-1.el10.x86_64            452/479 
  Installing       : qt6-qt3d-6.10.1-1.el10.x86_64                      453/479 
  Installing       : qt6-qtnetworkauth-6.10.1-1.el10.x86_64             454/479 
  Installing       : python3-pyside6-6.10.1-4.el10_3.x86_64             455/479 
  Installing       : chrpath-0.16-25.el10.x86_64                        456/479 
  Installing       : qt6-rpm-macros-6.10.1-1.el10.noarch                457/479 
  Installing       : qt6-qtbase-devel-6.10.1-1.el10.x86_64              458/479 
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  Installing       : pyside6-tools-6.10.1-4.el10_3.x86_64               460/479 
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  Installing       : glew-devel-2.2.0-9.el10_0.x86_64                   464/479 
  Installing       : netcdf-devel-4.9.2-7.el10_0.x86_64                 465/479 
  Installing       : python3-pillow-11.0.0-1.el10_0.x86_64              466/479 
  Installing       : python3-pytest-7.4.3-5.el10.noarch                 467/479 
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  Installing       : mmtf-cpp-devel-1.1.0-1.el10.x86_64                 470/479 
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  Installing       : libappstream-glib-0.8.3-3.el10.x86_64              472/479 
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  Installing       : fdupes-1:2.4.0-1.el10_1.x86_64                     474/479 
  Installing       : pyproject-rpm-macros-1.23.2-1.el10.noarch          475/479 
  Installing       : catch2-devel-2.13.10-5.el10_0.x86_64               476/479 
  Installing       : glm-devel-1.0.1-4.el10_2.noarch                    477/479 
  Installing       : systemd-rpm-macros-257-33.el10.noarch              478/479 
  Installing       : rpm-plugin-syslog-4.19.1.1-25.el10.x86_64          479/479 
  Running scriptlet: fontconfig-2.15.0-7.el10.x86_64                    479/479 
  Running scriptlet: rpm-plugin-syslog-4.19.1.1-25.el10.x86_64          479/479 

Installed:
  abseil-cpp-20240722.2-1.el10_3.x86_64                                         
  alsa-lib-1.2.16.1-1.el10.x86_64                                               
  annobin-docs-13.28-1.el10.noarch                                              
  annobin-plugin-gcc-13.28-1.el10.x86_64                                        
  aribb24-1.0.3^20160216git5e9be27-1.el10_0.x86_64                              
  avahi-libs-0.9~rc2-3.el10.x86_64                                              
  blosc-1.21.6-4.el10_0.x86_64                                                  
  bluez-libs-5.87+1.git30db66dc971b-1.el10.x86_64                               
  brotli-1.1.0-8.el10.x86_64                                                    
  brotli-devel-1.1.0-8.el10.x86_64                                              
  bzip2-devel-1.0.8-25.el10.x86_64                                              
  cairo-1.18.2-3.el10.x86_64                                                    
  cairo-devel-1.18.2-3.el10.x86_64                                              
  cairo-gobject-1.18.2-3.el10.x86_64                                            
  catch2-devel-2.13.10-5.el10_0.x86_64                                          
  chrpath-0.16-25.el10.x86_64                                                   
  cjson-1.7.19-1.el10_3.x86_64                                                  
  clang-libs-22.1.8-1.el10.x86_64                                               
  clang-resource-filesystem-22.1.8-1.el10.x86_64                                
  cmake-3.31.8-1.el10.x86_64                                                    
  cmake-data-3.31.8-1.el10.noarch                                               
  cmake-filesystem-3.31.8-1.el10.x86_64                                         
  cmake-rpm-macros-3.31.8-1.el10.noarch                                         
  codec2-1.2.0-5.el10_0~bootstrap.x86_64                                        
  cpp-14.4.1-3.el10.x86_64                                                      
  cpuinfo-24.09.26-1.git1e83a2f.el10_1.1.x86_64                                 
  cups-filesystem-1:2.4.10-18.el10.noarch                                       
  cups-libs-1:2.4.10-18.el10.x86_64                                             
  dbus-1:1.14.10-6.el10.x86_64                                                  
  dbus-broker-36-4.el10.x86_64                                                  
  dbus-common-1:1.14.10-6.el10.noarch                                           
  dbus-libs-1:1.14.10-6.el10.x86_64                                             
  default-fonts-core-sans-4.1-3.el10.noarch                                     
  desktop-file-utils-0.26-15.el10.x86_64                                        
  double-conversion-3.4.0-1.el10_2.x86_64                                       
  duktape-2.7.0-10.el10.x86_64                                                  
  emacs-filesystem-1:29.4-13.el10.noarch                                        
  expat-2.7.3-2.el10.x86_64                                                     
  fdk-aac-free-2.0.0-15.el10.x86_64                                             
  fdupes-1:2.4.0-1.el10_1.x86_64                                                
  fftw-libs-single-3.3.11-1.el10.x86_64                                         
  flac-libs-1.4.3-6.el10.x86_64                                                 
  fontconfig-2.15.0-7.el10.x86_64                                               
  fontconfig-devel-2.15.0-7.el10.x86_64                                         
  fonts-filesystem-1:2.0.5-18.el10.noarch                                       
  freeglut-3.4.0-9.el10.x86_64                                                  
  freeglut-devel-3.4.0-9.el10.x86_64                                            
  freetype-2.13.2-8.el10.x86_64                                                 
  freetype-devel-2.13.2-8.el10.x86_64                                           
  fribidi-1.0.14-4.el10.x86_64                                                  
  game-music-emu-0.6.3-16.el10_0.x86_64                                         
  gcc-14.4.1-3.el10.x86_64                                                      
  gcc-c++-14.4.1-3.el10.x86_64                                                  
  gcc-gfortran-14.4.1-3.el10.x86_64                                             
  gcc-plugin-annobin-14.4.1-3.el10.x86_64                                       
  gcc-toolset-15-binutils-2.44-8.el10.x86_64                                    
  gcc-toolset-15-gcc-15.2.1-8.el10.x86_64                                       
  gcc-toolset-15-gcc-c++-15.2.1-8.el10.x86_64                                   
  gcc-toolset-15-libstdc++-devel-15.2.1-8.el10.x86_64                           
  gcc-toolset-15-runtime-15.0-11.el10.x86_64                                    
  gdk-pixbuf2-2.42.12-5.el10.x86_64                                             
  gettext-0.22.5-6.el10.x86_64                                                  
  gettext-envsubst-0.22.5-6.el10.x86_64                                         
  gettext-libs-0.22.5-6.el10.x86_64                                             
  gettext-runtime-0.22.5-6.el10.x86_64                                          
  giflib-5.2.1-25.el10.x86_64                                                   
  glew-devel-2.2.0-9.el10_0.x86_64                                              
  glib2-2.80.4-22.el10.x86_64                                                   
  glib2-devel-2.80.4-22.el10.x86_64                                             
  glibc-devel-2.39-137.el10.x86_64                                              
  glm-devel-1.0.1-4.el10_2.noarch                                               
  glx-utils-9.0.0-8.el10.x86_64                                                 
  gnutls-3.8.10-4.el10.x86_64                                                   
  google-noto-fonts-common-20240401-5.el10.noarch                               
  google-noto-sans-vf-fonts-20240401-5.el10.noarch                              
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  graphite2-1.3.14-17.el10.x86_64                                               
  graphite2-devel-1.3.14-17.el10.x86_64                                         
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  gsm-1.0.22-8.el10.x86_64                                                      
  gstreamer1-1.26.7-5.el10.x86_64                                               
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  gstreamer1-plugins-base-1.26.7-3.el10.x86_64                                  
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  harfbuzz-icu-8.4.0-6.el10.x86_64                                              
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  hdf5-1.14.5-1.el10_0.x86_64                                                   
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  highway-1.3.0-1.el10_2.x86_64                                                 
  hwdata-0.379-10.10.el10.noarch                                                
  ilbc-3.0.4-12.el10_0.x86_64                                                   
  iso-codes-4.16.0-6.el10.noarch                                                
  jasper-libs-4.1.0-5.el10.x86_64                                               
  jbigkit-libs-2.1-31.el10.x86_64                                               
  json-glib-1.8.0-5.el10.x86_64                                                 
  kernel-headers-6.12.0-264.el10.x86_64                                         
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  krb5-devel-1.21.3-11.el10.x86_64                                              
  lame-libs-3.100-19.el10.x86_64                                                
  lcms2-2.16-6.el10.x86_64                                                      
  libGLEW-2.2.0-9.el10_0.x86_64                                                 
  libICE-1.1.1-5.el10.x86_64                                                    
  libSM-1.2.4-5.el10.x86_64                                                     
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  libX11-common-1.8.13-1.el10.noarch                                            
  libX11-devel-1.8.13-1.el10.x86_64                                             
  libX11-xcb-1.8.13-1.el10.x86_64                                               
  libXau-1.0.11-8.el10.x86_64                                                   
  libXau-devel-1.0.11-8.el10.x86_64                                             
  libXcomposite-0.4.6-5.el10.x86_64                                             
  libXdamage-1.1.6-5.el10.x86_64                                                
  libXext-1.3.6-3.el10.x86_64                                                   
  libXext-devel-1.3.6-3.el10.x86_64                                             
  libXfixes-6.0.1-5.el10.x86_64                                                 
  libXft-2.3.8-8.el10.x86_64                                                    
  libXi-1.8.1-7.el10.x86_64                                                     
  libXrandr-1.5.4-5.el10.x86_64                                                 
  libXrender-0.9.11-8.el10.x86_64                                               
  libXrender-devel-0.9.11-8.el10.x86_64                                         
  libXtst-1.2.4-8.el10.x86_64                                                   
  libXv-1.0.12-5.el10.x86_64                                                    
  libXxf86vm-1.1.5-8.el10.x86_64                                                
  libaec-1.1.7-1.el10_3.x86_64                                                  
  libaec-devel-1.1.7-1.el10_3.x86_64                                            
  libaom-3.13.1-1.el10_2.x86_64                                                 
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  libasyncns-0.8-30.el10.x86_64                                                 
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  libavutil-free-7.1.5-2.el10_3.x86_64                                          
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  libbluray-1.3.4-7.el10_0.x86_64                                               
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  libdatrie-0.2.13-11.el10.x86_64                                               
  libdav1d-1.5.3-1.el10_3.x86_64                                                
  libdrm-2.4.128-1.el10.x86_64                                                  
  libdrm-devel-2.4.128-1.el10.x86_64                                            
  libdvdnav-6.1.1-10.el10.x86_64                                                
  libdvdread-6.1.3-9.el10.x86_64                                                
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  libevdev-1.13.1-6.el10.x86_64                                                 
  libffi-devel-3.4.4-10.el10.x86_64                                             
  libgcrypt-1.11.0-7.el10.x86_64                                                
  libgfortran-14.4.1-3.el10.x86_64                                              
  libglvnd-1:1.7.0-7.el10.x86_64                                                
  libglvnd-core-devel-1:1.7.0-7.el10.x86_64                                     
  libglvnd-devel-1:1.7.0-7.el10.x86_64                                          
  libglvnd-egl-1:1.7.0-7.el10.x86_64                                            
  libglvnd-gles-1:1.7.0-7.el10.x86_64                                           
  libglvnd-glx-1:1.7.0-7.el10.x86_64                                            
  libglvnd-opengl-1:1.7.0-7.el10.x86_64                                         
  libgpg-error-1.50-2.el10.x86_64                                               
  libgudev-238-7.el10.x86_64                                                    
  libicu-74.2-5.el10.x86_64                                                     
  libicu-devel-74.2-5.el10.x86_64                                               
  libidn2-devel-2.3.7-3.el10.x86_64                                             
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  libjpeg-turbo-3.0.2-4.el10.x86_64                                             
  libjxl-1:0.10.4-1.el10_1.x86_64                                               
  libkadm5-1.21.3-11.el10.x86_64                                                
  liblc3-1.1.3-1.el10.x86_64                                                    
  libldac-2.0.2.3-17.el10.x86_64                                                
  libldb-4.24.5-101.el10.x86_64                                                 
  liblerc-4.0.0-8.el10.x86_64                                                   
  libmng-2.0.3-23.el10.x86_64                                                   
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  libmount-devel-2.40.2-20.el10.x86_64                                          
  libmpc-1.3.1-7.el10.x86_64                                                    
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  libogg-2:1.3.5-10.el10.x86_64                                                 
  libopenmpt-0.8.7-1.el10_3.x86_64                                              
  libpciaccess-0.16-16.el10.x86_64                                              
  libpciaccess-devel-0.16-16.el10.x86_64                                        
  libpng-2:1.6.40-13.el10.x86_64                                                
  libpng-devel-2:1.6.40-13.el10.x86_64                                          
  libpq-16.11-3.el10.x86_64                                                     
  libproxy-0.5.5-4.el10.x86_64                                                  
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  libquadmath-devel-14.4.1-3.el10.x86_64                                        
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  libraqm-0.10.1-1.el10_0.x86_64                                                
  librist-0.2.7-6.el10_0.x86_64                                                 
  librsvg2-2.57.1-9.el10.x86_64                                                 
  libsbc-2.0-7.el10.x86_64                                                      
  libseccomp-2.5.6-1.el10.x86_64                                                
  libselinux-devel-3.11-2.el10.x86_64                                           
  libsepol-devel-3.11-2.el10.x86_64                                             
  libsmbclient-4.24.5-101.el10.x86_64                                           
  libsndfile-1.2.2-7.el10.x86_64                                                
  libsodium-1.0.22-1.el10_3.x86_64                                              
  libssh-devel-0.12.2-2.el10.x86_64                                             
  libstdc++-devel-14.4.1-3.el10.x86_64                                          
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  libtalloc-2.4.4-100.el10.x86_64                                               
  libtdb-1.4.15-100.el10.x86_64                                                 
  libtevent-0.17.1-100.el10.x86_64                                              
  libthai-0.1.29-10.el10.x86_64                                                 
  libtheora-1:1.1.1-39.el10.x86_64                                              
  libtiff-4.6.0-11.el10.x86_64                                                  
  libtirpc-1.3.5-1.el10.x86_64                                                  
  libtool-ltdl-2.4.7-14.el10.x86_64                                             
  libudfread-1.1.2-9.el10_0.x86_64                                              
  libunwind-1.8.0-4.el10_0.x86_64                                               
  libusb1-1.0.30-1.el10.x86_64                                                  
  libuv-1:1.52.1-1.el10.x86_64                                                  
  libva-2.22.0-2.el10.x86_64                                                    
  libvdpau-1.5-8.el10.x86_64                                                    
  libverto-devel-0.3.2-10.el10.x86_64                                           
  libvmaf-3.0.0-2.el10_0.x86_64                                                 
  libvorbis-1:1.3.7-12.el10.x86_64                                              
  libvpl-1:2.17.0-1.el10_3.x86_64                                               
  libvpx-1.14.1-6.el10.x86_64                                                   
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  libwacom-data-2.14.0-4.el10.noarch                                            
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  libwbclient-4.24.5-101.el10.x86_64                                            
  libwebp-1.3.2-10.el10.x86_64                                                  
  libxcb-1.17.0-3.el10.x86_64                                                   
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  libxkbcommon-x11-1.7.0-4.el10.x86_64                                          
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  libxslt-1.1.39-10.el10.x86_64                                                 
  libzip-1.10.1-5.el10.x86_64                                                   
  llvm-filesystem-22.1.8-1.el10.x86_64                                          
  llvm-libs-22.1.8-1.el10.x86_64                                                
  lmdb-libs-0.9.32-4.el10.x86_64                                                
  make-1:4.4.1-9.el10.x86_64                                                    
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  mbedtls-3.6.7-1.el10_3.x86_64                                                 
  mesa-dri-drivers-26.1.1-2.el10.x86_64                                         
  mesa-filesystem-26.1.1-2.el10.x86_64                                          
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  mesa-libGL-26.1.1-2.el10.x86_64                                               
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  mesa-libGLU-9.0.3-7.el10.x86_64                                               
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  mesa-libgbm-26.1.1-2.el10.x86_64                                              
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  mpdecimal-2.5.1-12.el10.x86_64                                                
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  msgpack-3.1.0-17.el10_0.x86_64                                                
  msgpack-devel-3.1.0-17.el10_0.x86_64                                          
  mtdev-1.1.6-10.el10.x86_64                                                    
  ncurses-6.4-15.20240127.el10.x86_64                                           
  netcdf-4.9.2-7.el10_0.x86_64                                                  
  netcdf-devel-4.9.2-7.el10_0.x86_64                                            
  nettle-3.10.1-1.el10.x86_64                                                   
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  nspr-4.39.0-5.el10.x86_64                                                     
  nss-3.124.0-5.el10.x86_64                                                     
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  nss-sysinit-3.124.0-5.el10.x86_64                                             
  nss-util-3.124.0-5.el10.x86_64                                                
  ocl-icd-2.3.2-8.el10.x86_64                                                   
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  openssl-devel-1:3.5.7-3.el10.x86_64                                           
  opus-1.4-6.el10.x86_64                                                        
  orc-0.4.39-2.el10.x86_64                                                      
  pango-1.54.0-4.el10.x86_64                                                    
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  perl-B-1.89-514.el10.x86_64                                                   
  perl-Carp-1.54-511.el10.noarch                                                
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  perl-Digest-1.20-511.el10.noarch                                              
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  perl-English-1.11-514.el10.noarch                                             
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  perl-Getopt-Std-1.14-514.el10.noarch                                          
  perl-HTTP-Tiny-0.088-512.el10.noarch                                          
  perl-IO-1.55-514.el10.x86_64                                                  
  perl-IO-Socket-IP-0.42-512.el10.noarch                                        
  perl-IO-Socket-SSL-2.085-3.el10.noarch                                        
  perl-IPC-Open3-1.22-514.el10.noarch                                           
  perl-MIME-Base64-3.16-511.el10.x86_64                                         
  perl-Mozilla-CA-20231213-5.el10.noarch                                        
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  perl-POSIX-2.20-514.el10.x86_64                                               
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  perl-Storable-1:3.32-511.el10.x86_64                                          
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  perl-URI-5.27-3.el10.noarch                                                   
  perl-base-2.27-514.el10.noarch                                                
  perl-constant-1.33-512.el10.noarch                                            
  perl-if-0.61.000-514.el10.noarch                                              
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  perl-libnet-3.15-512.el10.noarch                                              
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  perl-mro-1.29-514.el10.x86_64                                                 
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  perl-overloading-0.02-514.el10.noarch                                         
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  perl-vars-1.05-514.el10.noarch                                                
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  python-rpm-macros-3.12-11.el10.noarch                                         
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  python3-olefile-0.47-5.el10_0.noarch                                          
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  python3-rpm-generators-14-12.el10.noarch                                      
  python3-rpm-macros-3.12-11.el10.noarch                                        
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  qt6-designer-6.10.1-3.el10.x86_64                                             
  qt6-filesystem-6.10.1-1.el10.x86_64                                           
  qt6-linguist-6.10.1-3.el10.x86_64                                             
  qt6-qt3d-6.10.1-1.el10.x86_64                                                 
  qt6-qtbase-6.10.1-1.el10.x86_64                                               
  qt6-qtbase-common-6.10.1-1.el10.noarch                                        
  qt6-qtbase-devel-6.10.1-1.el10.x86_64                                         
  qt6-qtbase-gui-6.10.1-1.el10.x86_64                                           
  qt6-qtbase-mysql-6.10.1-1.el10.x86_64                                         
  qt6-qtbase-odbc-6.10.1-1.el10.x86_64                                          
  qt6-qtbase-postgresql-6.10.1-1.el10.x86_64                                    
  qt6-qtcharts-6.10.1-1.el10.x86_64                                             
  qt6-qtconnectivity-6.10.1-1.el10.x86_64                                       
  qt6-qtdatavis3d-6.10.1-1.el10.x86_64                                          
  qt6-qtdeclarative-6.10.1-2.el10.x86_64                                        
  qt6-qtdeclarative-devel-6.10.1-2.el10.x86_64                                  
  qt6-qtgraphs-6.10.1-1.el10_2.x86_64                                           
  qt6-qthttpserver-6.10.1-1.el10_2.x86_64                                       
  qt6-qtimageformats-6.10.1-1.el10.x86_64                                       
  qt6-qtlocation-6.10.1-1.el10.x86_64                                           
  qt6-qtmultimedia-6.10.1-1.el10.x86_64                                         
  qt6-qtnetworkauth-6.10.1-1.el10.x86_64                                        
  qt6-qtpdf-6.10.1-2.1.el10_2.x86_64                                            
  qt6-qtpositioning-6.10.1-1.el10.x86_64                                        
  qt6-qtquick3d-6.10.1-1.el10.x86_64                                            
  qt6-qtquicktimeline-6.10.1-1.el10.x86_64                                      
  qt6-qtremoteobjects-6.10.1-1.el10.x86_64                                      
  qt6-qtscxml-6.10.1-1.el10.x86_64                                              
  qt6-qtsensors-6.10.1-1.el10.x86_64                                            
  qt6-qtserialbus-6.10.1-1.el10.x86_64                                          
  qt6-qtserialport-6.10.1-1.el10.x86_64                                         
  qt6-qtshadertools-6.10.1-2.el10.x86_64                                        
  qt6-qtspeech-6.10.1-1.el10.x86_64                                             
  qt6-qtsvg-6.10.1-1.el10.x86_64                                                
  qt6-qttools-6.10.1-3.el10.x86_64                                              
  qt6-qttools-common-6.10.1-3.el10.noarch                                       
  qt6-qttools-libs-designer-6.10.1-3.el10.x86_64                                
  qt6-qttools-libs-designercomponents-6.10.1-3.el10.x86_64                      
  qt6-qttools-libs-help-6.10.1-3.el10.x86_64                                    
  qt6-qtwebchannel-6.10.1-1.el10.x86_64                                         
  qt6-qtwebengine-6.10.1-2.1.el10_2.x86_64                                      
  qt6-qtwebsockets-6.10.1-1.el10.x86_64                                         
  qt6-qtwebview-6.10.1-1.el10_2.x86_64                                          
  qt6-rpm-macros-6.10.1-1.el10.noarch                                           
  rav1e-libs-0.8.1-2.el10_2.x86_64                                              
  re2-2:20251105-1.el10_2.x86_64                                                
  redhat-text-vf-fonts-4.1.0-1.el10.noarch                                      
  rpm-plugin-syslog-4.19.1.1-25.el10.x86_64                                     
  rsvg-pixbuf-loader-2.57.1-9.el10.x86_64                                       
  samba-client-libs-4.24.5-101.el10.x86_64                                      
  samba-common-4.24.5-101.el10.noarch                                           
  samba-core-libs-4.24.5-101.el10.x86_64                                        
  samba-ndr-libs-4.24.5-101.el10.x86_64                                         
  shared-mime-info-2.3-8.el10.x86_64                                            
  shiboken6-6.10.1-4.el10_3.x86_64                                              
  snappy-1.1.10-7.el10.x86_64                                                   
  soxr-0.1.3-17.el10_0.x86_64                                                   
  speex-1.2.0-19.el10.x86_64                                                    
  spirv-tools-libs-2026.1-1.el10.x86_64                                         
  srt-libs-1.5.4-0.rc0.el10_0.1.x86_64                                          
  svt-av1-libs-2.3.0-1.el10_0.x86_64                                            
  sysprof-capture-devel-47.2-1.el10.x86_64                                      
  systemd-257-33.el10.x86_64                                                    
  systemd-pam-257-33.el10.x86_64                                                
  systemd-rpm-macros-257-33.el10.noarch                                         
  twolame-libs-0.4.0-6.el10.x86_64                                              
  tzdata-2026c-1.el10.noarch                                                    
  unixODBC-2.3.12-6.el10.x86_64                                                 
  vim-filesystem-2:9.1.083-22.el10.noarch                                       
  vo-amrwbenc-0.1.3-21.el10_0.x86_64                                            
  vulkan-headers-1.4.341.0-1.el10.noarch                                        
  vulkan-loader-1.4.341.0-1.el10.x86_64                                         
  vulkan-loader-devel-1.4.341.0-1.el10.x86_64                                   
  webrtc-audio-processing-1.3-5.el10.x86_64                                     
  xcb-util-0.4.1-7.el10.x86_64                                                  
  xcb-util-cursor-0.1.4-6.el10.x86_64                                           
  xcb-util-image-0.4.1-7.el10.x86_64                                            
  xcb-util-keysyms-0.4.1-7.el10.x86_64                                          
  xcb-util-renderutil-0.3.10-7.el10.x86_64                                      
  xcb-util-wm-0.4.2-7.el10.x86_64                                               
  xkeyboard-config-2.41-3.el10.noarch                                           
  xml-common-0.6.3-65.el10.noarch                                               
  xorg-x11-proto-devel-2024.1-3.el10.noarch                                     
  xvidcore-1.3.7-12.el10_0.x86_64                                               
  xz-devel-1:5.6.2-5.el10.x86_64                                                
  zeromq-4.3.5-18.el10_0.x86_64                                                 
  zlib-ng-compat-devel-2.2.3-3.el10.x86_64                                      
  zvbi-0.2.42-1.el10_0.x86_64                                                   

Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1787616000
Wrote: /builddir/build/SRPMS/pymol-3.1.0-17.el10.TMM.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 9.7 kB/s | 1.5 kB     00:00    
CentOS Stream 10 - BaseOS                        39 kB/s | 5.1 kB     00:00    
CentOS Stream 10 - AppStream                     98 kB/s | 5.2 kB     00:00    
CentOS Stream 10 - CRB                           26 kB/s | 5.0 kB     00:00    
CentOS Stream 10 - Extras packages               97 kB/s | 5.9 kB     00:00    
Extra Packages for Enterprise Linux 10 - x86_64 178 kB/s |  23 kB     00:00    
Package catch2-devel-2.13.10-5.el10_0.x86_64 is already installed.
Package desktop-file-utils-0.26-15.el10.x86_64 is already installed.
Package fdupes-1:2.4.0-1.el10_1.x86_64 is already installed.
Package freeglut-devel-3.4.0-9.el10.x86_64 is already installed.
Package freetype-devel-2.13.2-8.el10.x86_64 is already installed.
Package gcc-14.4.1-3.el10.x86_64 is already installed.
Package gcc-c++-14.4.1-3.el10.x86_64 is already installed.
Package glew-devel-2.2.0-9.el10_0.x86_64 is already installed.
Package glm-devel-1.0.1-4.el10_2.noarch is already installed.
Package mesa-libGL-devel-26.1.1-2.el10.x86_64 is already installed.
Package libappstream-glib-0.8.3-3.el10.x86_64 is already installed.
Package libpng-devel-2:1.6.40-13.el10.x86_64 is already installed.
Package libxml2-devel-2.12.5-15.el10.x86_64 is already installed.
Package mmtf-cpp-devel-1.1.0-1.el10.x86_64 is already installed.
Package msgpack-devel-3.1.0-17.el10_0.x86_64 is already installed.
Package netcdf-devel-4.9.2-7.el10_0.x86_64 is already installed.
Package pyproject-rpm-macros-1.23.2-1.el10.noarch is already installed.
Package python3-devel-3.12.13-3.el10.x86_64 is already installed.
Package python3-pillow-11.0.0-1.el10_0.x86_64 is already installed.
Package python3-pyside6-devel-6.10.1-4.el10_3.x86_64 is already installed.
Package python3-pytest-7.4.3-5.el10.noarch is already installed.
Package python3-qt5-devel-5.15.11-8.el10_2.x86_64 is already installed.
Dependencies resolved.
Nothing to do.
Complete!
Finish: build setup for pymol-3.1.0-17.el10.TMM.src.rpm
Start: rpmbuild pymol-3.1.0-17.el10.TMM.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1787616000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.UQ2pLN
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-3.1.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pymol-open-source-3.1.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pymol-open-source-3.1.0
+ rm -rf /builddir/build/BUILD/pymol-open-source-3.1.0-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/pymol-open-source-3.1.0-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-main.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-pmgapp.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-mmtf.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-setup.py.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-pyproject.toml.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ ln -sr modules/web modules/pymol_web
+ sed -e 's|1.26.4,<2|1.26.4,<3|g' -i ./pyproject.toml
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Gp6jKw
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-3.1.0
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pymol-open-source-3.1.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/pymol-open-source-3.1.0/.pyproject-builddir
+ RPM_TOXENV=py312
+ FEDORA=
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pymol-open-source-3.1.0/pyproject-wheeldir --output /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-buildrequires --dep-overrides-file /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-dep-overrides -p
Handling numpy>=1.26.4,<3 from build-system.requires
Requirement not satisfied: numpy<3,>=1.26.4
Handling setuptools>=69.0.0 from build-system.requires
Requirement not satisfied: setuptools>=69.0.0
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/pymol-3.1.0-17.el10.TMM.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 8.0 kB/s | 1.5 kB     00:00    
CentOS Stream 10 - BaseOS                        86 kB/s | 5.1 kB     00:00    
CentOS Stream 10 - AppStream                    100 kB/s | 5.2 kB     00:00    
CentOS Stream 10 - CRB                           83 kB/s | 5.0 kB     00:00    
CentOS Stream 10 - Extras packages              116 kB/s | 5.9 kB     00:00    
Extra Packages for Enterprise Linux 10 - x86_64  78 kB/s |  23 kB     00:00    
Package catch2-devel-2.13.10-5.el10_0.x86_64 is already installed.
Package desktop-file-utils-0.26-15.el10.x86_64 is already installed.
Package fdupes-1:2.4.0-1.el10_1.x86_64 is already installed.
Package freeglut-devel-3.4.0-9.el10.x86_64 is already installed.
Package freetype-devel-2.13.2-8.el10.x86_64 is already installed.
Package gcc-14.4.1-3.el10.x86_64 is already installed.
Package gcc-c++-14.4.1-3.el10.x86_64 is already installed.
Package glew-devel-2.2.0-9.el10_0.x86_64 is already installed.
Package glm-devel-1.0.1-4.el10_2.noarch is already installed.
Package mesa-libGL-devel-26.1.1-2.el10.x86_64 is already installed.
Package libappstream-glib-0.8.3-3.el10.x86_64 is already installed.
Package libpng-devel-2:1.6.40-13.el10.x86_64 is already installed.
Package libxml2-devel-2.12.5-15.el10.x86_64 is already installed.
Package mmtf-cpp-devel-1.1.0-1.el10.x86_64 is already installed.
Package msgpack-devel-3.1.0-17.el10_0.x86_64 is already installed.
Package netcdf-devel-4.9.2-7.el10_0.x86_64 is already installed.
Package pyproject-rpm-macros-1.23.2-1.el10.noarch is already installed.
Package pyproject-rpm-macros-1.23.2-1.el10.noarch is already installed.
Package python3-devel-3.12.13-3.el10.x86_64 is already installed.
Package python3-devel-3.12.13-3.el10.x86_64 is already installed.
Package python3-pillow-11.0.0-1.el10_0.x86_64 is already installed.
Package python3-pyside6-devel-6.10.1-4.el10_3.x86_64 is already installed.
Package python3-pytest-7.4.3-5.el10.noarch is already installed.
Package python3-qt5-devel-5.15.11-8.el10_2.x86_64 is already installed.
Package python3-packaging-24.2-2.el10.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch      Version              Repository    Size
================================================================================
Installing:
 python3-numpy                x86_64    1:1.26.4-7.el10      appstream    6.7 M
 python3-pip                  noarch    23.3.2-11.el10       appstream    3.2 M
 python3-setuptools           noarch    69.0.3-12.el10       baseos       1.6 M
Installing dependencies:
 flexiblas                    x86_64    3.4.2-3.el10         appstream     26 k
 flexiblas-netlib             x86_64    3.4.2-3.el10         appstream    3.2 M
 flexiblas-openblas-openmp    x86_64    3.4.2-3.el10         appstream     18 k
 openblas                     x86_64    0.3.33-1.el10        appstream     46 k
 openblas-openmp              x86_64    0.3.33-1.el10        appstream    5.3 M

Transaction Summary
================================================================================
Install  8 Packages

Total download size: 20 M
Installed size: 113 M
Downloading Packages:
(1/8): flexiblas-3.4.2-3.el10.x86_64.rpm        713 kB/s |  26 kB     00:00    
(2/8): flexiblas-openblas-openmp-3.4.2-3.el10.x 1.3 MB/s |  18 kB     00:00    
(3/8): openblas-0.3.33-1.el10.x86_64.rpm        2.0 MB/s |  46 kB     00:00    
(4/8): flexiblas-netlib-3.4.2-3.el10.x86_64.rpm  28 MB/s | 3.2 MB     00:00    
(5/8): openblas-openmp-0.3.33-1.el10.x86_64.rpm  62 MB/s | 5.3 MB     00:00    
(6/8): python3-numpy-1.26.4-7.el10.x86_64.rpm   133 MB/s | 6.7 MB     00:00    
(7/8): python3-pip-23.3.2-11.el10.noarch.rpm    105 MB/s | 3.2 MB     00:00    
(8/8): python3-setuptools-69.0.3-12.el10.noarch 2.2 MB/s | 1.6 MB     00:00    
--------------------------------------------------------------------------------
Total                                            19 MB/s |  20 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : openblas-0.3.33-1.el10.x86_64                          1/8 
  Installing       : openblas-openmp-0.3.33-1.el10.x86_64                   2/8 
  Installing       : flexiblas-netlib-3.4.2-3.el10.x86_64                   3/8 
  Installing       : flexiblas-openblas-openmp-3.4.2-3.el10.x86_64          4/8 
  Installing       : flexiblas-3.4.2-3.el10.x86_64                          5/8 
  Installing       : python3-numpy-1:1.26.4-7.el10.x86_64                   6/8 
  Installing       : python3-pip-23.3.2-11.el10.noarch                      7/8 
  Installing       : python3-setuptools-69.0.3-12.el10.noarch               8/8 
  Running scriptlet: python3-setuptools-69.0.3-12.el10.noarch               8/8 

Installed:
  flexiblas-3.4.2-3.el10.x86_64                                                 
  flexiblas-netlib-3.4.2-3.el10.x86_64                                          
  flexiblas-openblas-openmp-3.4.2-3.el10.x86_64                                 
  openblas-0.3.33-1.el10.x86_64                                                 
  openblas-openmp-0.3.33-1.el10.x86_64                                          
  python3-numpy-1:1.26.4-7.el10.x86_64                                          
  python3-pip-23.3.2-11.el10.noarch                                             
  python3-setuptools-69.0.3-12.el10.noarch                                      

Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1787616000
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.U3r2v9
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-3.1.0
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pymol-open-source-3.1.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/pymol-open-source-3.1.0/.pyproject-builddir
+ RPM_TOXENV=py312
+ FEDORA=
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pymol-open-source-3.1.0/pyproject-wheeldir --output /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-buildrequires --dep-overrides-file /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-dep-overrides -p
Handling numpy>=1.26.4,<3 from build-system.requires
Requirement satisfied: numpy<3,>=1.26.4
   (installed: numpy 1.26.4)
Handling setuptools>=69.0.0 from build-system.requires
Requirement satisfied: setuptools>=69.0.0
   (installed: setuptools 69.0.3)
Handling numpy>=1.26.4,<3 from pyproject.toml generated metadata: [dependencies] (pymol)
Requirement satisfied: numpy<3,>=1.26.4
   (installed: numpy 1.26.4)
Handling pillow==10.3.0 from pyproject.toml generated metadata: [optional-dependencies] test (pymol)
Ignoring alien requirement: pillow==10.3.0
Handling pytest==8.2.2 from pyproject.toml generated metadata: [optional-dependencies] test (pymol)
Ignoring alien requirement: pytest==8.2.2
+ cat /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/pymol-3.1.0-17.el10.TMM.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 7.6 kB/s | 1.5 kB     00:00    
CentOS Stream 10 - BaseOS                        92 kB/s | 5.1 kB     00:00    
CentOS Stream 10 - AppStream                     53 kB/s | 5.2 kB     00:00    
CentOS Stream 10 - CRB                          100 kB/s | 5.0 kB     00:00    
CentOS Stream 10 - Extras packages              112 kB/s | 5.9 kB     00:00    
Extra Packages for Enterprise Linux 10 - x86_64 217 kB/s |  23 kB     00:00    
Package python3-numpy-1:1.26.4-7.el10.x86_64 is already installed.
Package catch2-devel-2.13.10-5.el10_0.x86_64 is already installed.
Package desktop-file-utils-0.26-15.el10.x86_64 is already installed.
Package fdupes-1:2.4.0-1.el10_1.x86_64 is already installed.
Package freeglut-devel-3.4.0-9.el10.x86_64 is already installed.
Package freetype-devel-2.13.2-8.el10.x86_64 is already installed.
Package gcc-14.4.1-3.el10.x86_64 is already installed.
Package gcc-c++-14.4.1-3.el10.x86_64 is already installed.
Package glew-devel-2.2.0-9.el10_0.x86_64 is already installed.
Package glm-devel-1.0.1-4.el10_2.noarch is already installed.
Package mesa-libGL-devel-26.1.1-2.el10.x86_64 is already installed.
Package libappstream-glib-0.8.3-3.el10.x86_64 is already installed.
Package libpng-devel-2:1.6.40-13.el10.x86_64 is already installed.
Package libxml2-devel-2.12.5-15.el10.x86_64 is already installed.
Package mmtf-cpp-devel-1.1.0-1.el10.x86_64 is already installed.
Package msgpack-devel-3.1.0-17.el10_0.x86_64 is already installed.
Package netcdf-devel-4.9.2-7.el10_0.x86_64 is already installed.
Package pyproject-rpm-macros-1.23.2-1.el10.noarch is already installed.
Package pyproject-rpm-macros-1.23.2-1.el10.noarch is already installed.
Package python3-devel-3.12.13-3.el10.x86_64 is already installed.
Package python3-devel-3.12.13-3.el10.x86_64 is already installed.
Package python3-pillow-11.0.0-1.el10_0.x86_64 is already installed.
Package python3-pyside6-devel-6.10.1-4.el10_3.x86_64 is already installed.
Package python3-pytest-7.4.3-5.el10.noarch is already installed.
Package python3-qt5-devel-5.15.11-8.el10_2.x86_64 is already installed.
Package python3-packaging-24.2-2.el10.noarch is already installed.
Package python3-pip-23.3.2-11.el10.noarch is already installed.
Package python3-setuptools-69.0.3-12.el10.noarch is already installed.
Dependencies resolved.
Nothing to do.
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1787616000
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.vrFEQd
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-3.1.0
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pymol-open-source-3.1.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/pymol-open-source-3.1.0/.pyproject-builddir
+ RPM_TOXENV=py312
+ FEDORA=
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pymol-open-source-3.1.0/pyproject-wheeldir --output /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-buildrequires --dep-overrides-file /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-dep-overrides -p
Handling numpy>=1.26.4,<3 from build-system.requires
Requirement satisfied: numpy<3,>=1.26.4
   (installed: numpy 1.26.4)
Handling setuptools>=69.0.0 from build-system.requires
Requirement satisfied: setuptools>=69.0.0
   (installed: setuptools 69.0.3)
Handling numpy>=1.26.4,<3 from pyproject.toml generated metadata: [dependencies] (pymol)
Requirement satisfied: numpy<3,>=1.26.4
   (installed: numpy 1.26.4)
Handling pillow==10.3.0 from pyproject.toml generated metadata: [optional-dependencies] test (pymol)
Ignoring alien requirement: pillow==10.3.0
Handling pytest==8.2.2 from pyproject.toml generated metadata: [optional-dependencies] test (pymol)
Ignoring alien requirement: pytest==8.2.2
+ cat /builddir/build/BUILD/pymol-3.1.0-17.el10.TMM.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.PJhcE6
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-3.1.0
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2  '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2  '
++ /usr/bin/getconf _NPROCESSORS_ONLN
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' --use-msgpackc=c++11 --use-openmp=yes --jobs 4
running build
running build_py
creating build/lib.linux-x86_64-cpython-312
creating build/lib.linux-x86_64-cpython-312/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-cpython-312/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-cpython-312/pymol2
creating build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/xwin.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/xray.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/viewing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/vfont.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/util.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/shortcut_manager.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/shortcut_dict.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/setting.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/selector.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/selecting.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/save_shortcut.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/rpc.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/querying.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/preset.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/povray.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/parsing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/parser.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/mpeg_encode.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/moving.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/movie.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/morphing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/menu.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/locking.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/keywords.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/invocation.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/internal.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/importing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/helping.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/headering.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/gui.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/fitting.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/externing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/exporting.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/editor.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/editing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/creating.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/controlling.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/constants.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/computing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/completing.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/commanding.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/cmd.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/checking.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/cgobuilder.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/cgo.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/callback.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/api.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/_gui.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/__main__.py -> build/lib.linux-x86_64-cpython-312/pymol
copying modules/pymol/__init__.py -> build/lib.linux-x86_64-cpython-312/pymol
creating build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-cpython-312/pmg_tk
creating build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/scene_bin_gui.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-x86_64-cpython-312/pmg_qt
creating build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/xyz.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/solvate.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/sdf.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/protein.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/place.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/pkl.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/pdb.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/mol2.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/mol.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/models.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/mmd.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/mass.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/map.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/mae.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/lst.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/io.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/gms.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/cpv.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/cif.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/charge.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/cc1.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/brick.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/bonds.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/arc.py -> build/lib.linux-x86_64-cpython-312/chempy
copying modules/chempy/__init__.py -> build/lib.linux-x86_64-cpython-312/chempy
creating build/lib.linux-x86_64-cpython-312/pymol_web
creating build/lib.linux-x86_64-cpython-312/pymol_web/examples
copying modules/pymol_web/examples/justhttpd.py -> build/lib.linux-x86_64-cpython-312/pymol_web/examples
copying modules/pymol_web/examples/__init__.py -> build/lib.linux-x86_64-cpython-312/pymol_web/examples
creating build/lib.linux-x86_64-cpython-312/web
creating build/lib.linux-x86_64-cpython-312/web/examples
copying modules/web/examples/justhttpd.py -> build/lib.linux-x86_64-cpython-312/web/examples
copying modules/web/examples/__init__.py -> build/lib.linux-x86_64-cpython-312/web/examples
creating build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/openvr.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-cpython-312/pymol/wizard
creating build/lib.linux-x86_64-cpython-312/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-x86_64-cpython-312/pymol/stereochemistry
creating build/lib.linux-x86_64-cpython-312/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-cpython-312/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-x86_64-cpython-312/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-cpython-312/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-cpython-312/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-cpython-312/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-cpython-312/pymol/plugins
creating build/lib.linux-x86_64-cpython-312/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-x86_64-cpython-312/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-x86_64-cpython-312/pymol/Qt
creating build/lib.linux-x86_64-cpython-312/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-cpython-312/pmg_tk/startup
creating build/lib.linux-x86_64-cpython-312/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-cpython-312/pmg_tk/skins
creating build/lib.linux-x86_64-cpython-312/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-cpython-312/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-cpython-312/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-cpython-312/pmg_tk/skins/normal
creating build/lib.linux-x86_64-cpython-312/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-cpython-312/pmg_tk/skins/demo
creating build/lib.linux-x86_64-cpython-312/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-x86_64-cpython-312/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-x86_64-cpython-312/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-x86_64-cpython-312/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-x86_64-cpython-312/pmg_qt/syntax
creating build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
creating build/lib.linux-x86_64-cpython-312/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-cpython-312/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-cpython-312/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-cpython-312/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-cpython-312/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-cpython-312/chempy/tinker
creating build/lib.linux-x86_64-cpython-312/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-x86_64-cpython-312/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-312/chempy/mmtf
creating build/lib.linux-x86_64-cpython-312/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-cpython-312/chempy/fragments
creating build/lib.linux-x86_64-cpython-312/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-cpython-312/chempy/fast
creating build/lib.linux-x86_64-cpython-312/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-cpython-312/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-cpython-312/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-cpython-312/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-cpython-312/chempy/champ
creating build/lib.linux-x86_64-cpython-312/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-cpython-312/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-cpython-312/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-cpython-312/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-cpython-312/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-cpython-312/chempy/bmin
running egg_info
creating modules/pymol.egg-info
writing modules/pymol.egg-info/PKG-INFO
/usr/lib/python3.12/site-packages/setuptools/_core_metadata.py:157: SetuptoolsDeprecationWarning: Invalid config.
!!

        ********************************************************************************
        newlines are not allowed in `summary` and will break in the future
        ********************************************************************************

!!
  write_field('Summary', single_line(summary))
writing dependency_links to modules/pymol.egg-info/dependency_links.txt
writing entry points to modules/pymol.egg-info/entry_points.txt
writing requirements to modules/pymol.egg-info/requires.txt
writing top-level names to modules/pymol.egg-info/top_level.txt
writing manifest file 'modules/pymol.egg-info/SOURCES.txt'
reading manifest file 'modules/pymol.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'modules/pymol.egg-info/SOURCES.txt'
copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-x86_64-cpython-312/pmg_qt/forms
running build_ext
cmake /builddir/build/BUILD/pymol-open-source-3.1.0 -DTARGET_NAME=_cmd -DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/builddir/build/BUILD/pymol-open-source-3.1.0/build/lib.linux-x86_64-cpython-312/pymol -DCMAKE_BUILD_TYPE=Release -DALL_INC_DIR=include;contrib/uiuc/plugins/include;ov/src;layer0;layer1;layer2;layer3;layer4;layer5;build/generated;contrib/uiuc/plugins/molfile_plugin/src;contrib/mmtf-c;/usr/lib64/python3.12/site-packages/numpy/core/include;/usr/include;/usr/include/freetype2;/usr/include/libxml2;/usr/include/python3.12;/usr/include/python3.12; -DALL_SRC=build/generated/ShaderText.cpp;contrib/mmtf-c/mmtf_parser.cpp;contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c;contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c;contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c;contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c;contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/carplugin.c;contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/corplugin.c;contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c;contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c;contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c;contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c;contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/hash.c;contrib/uiuc/plugins/molfile_plugin/src/inthash.c;contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c;contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c;contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c;contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c;contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c;contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c;contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c;contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c;contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp;contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c;layer0/Bezier.cpp;layer0/Block.cpp;layer0/CarveHelper.cpp;layer0/ContourSurf.cpp;layer0/Crystal.cpp;layer0/Err.cpp;layer0/Feedback.cpp;layer0/Field.cpp;layer0/File.cpp;layer0/GFXManager.cpp;layer0/GenericBuffer.cpp;layer0/GraphicsUtil.cpp;layer0/Isosurf.cpp;layer0/Map.cpp;layer0/Match.cpp;layer0/Matrix.cpp;layer0/MemoryDebug.cpp;layer0/MemoryUsage.cpp;layer0/MyPNG.cpp;layer0/Parse.cpp;layer0/Pixmap.cpp;layer0/PostProcess.cpp;layer0/PrintUtils.cpp;layer0/ShaderMgr.cpp;layer0/ShaderPreprocessor.cpp;layer0/ShaderPrg.cpp;layer0/Sphere.cpp;layer0/TTT.cpp;layer0/Tetsurf.cpp;layer0/Texture.cpp;layer0/Tracker.cpp;layer0/Triangle.cpp;layer0/Util.cpp;layer0/Util2.cpp;layer0/Vector.cpp;layer0/Word.cpp;layer0/ccealignmodule.cpp;layer0/marching_cubes.cpp;layer0/os_gl.cpp;layer1/Basis.cpp;layer1/ButMode.cpp;layer1/CGO.cpp;layer1/CGOGL.cpp;layer1/CGORenderer.cpp;layer1/COLLADA.cpp;layer1/Camera.cpp;layer1/Character.cpp;layer1/Color.cpp;layer1/Control.cpp;layer1/Extrude.cpp;layer1/Font.cpp;layer1/FontGLUT.cpp;layer1/FontGLUT8x13.cpp;layer1/FontGLUT9x15.cpp;layer1/FontGLUTHel10.cpp;layer1/FontGLUTHel12.cpp;layer1/FontGLUTHel18.cpp;layer1/FontType.cpp;layer1/ImageUtils.cpp;layer1/Movie.cpp;layer1/Ortho.cpp;layer1/P.cpp;layer1/PConv.cpp;layer1/Pick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-DALL_DEF=_PYMOL_LIBPNG;_PYMOL_FREETYPE;PYMOL_OPENMP;_PYMOL_VMD_PLUGINS;_HAVE_LIBXML;MMTF_MSGPACK_USE_CPP11;MSGPACK_NO_BOOST;_PYMOL_NO_MAIN;_PYMOL_NUMPY; -DALL_LIB_DIR=/usr/lib64;/usr/lib; -DALL_LIB=png;freetype;xml2;GL;GLEW;netcdf; -DALL_COMP_ARGS=-Werror=return-type;-Wunused-variable;-Wno-switch;-Wno-narrowing;-Wno-char-subscripts;-O2;-fopenmp; -DALL_EXT_LINK=-fopenmp -DSHARED_SUFFIX=.cpython-312-x86_64-linux-gnu.so
-- The C compiler identification is GNU 14.4.1
-- The CXX compiler identification is GNU 14.4.1
-- Detecting C compiler ABI info
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-- Detecting C compile features
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-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
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-- Configuring done (0.5s)
-- Generating done (0.0s)
-- Build files have been written to: /builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd
cmake --build . --config Release -j4
/usr/bin/cmake -S/builddir/build/BUILD/pymol-open-source-3.1.0 -B/builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd/CMakeFiles /builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
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cd /builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/pymol-open-source-3.1.0 /builddir/build/BUILD/pymol-open-source-3.1.0 /builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd /builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd /builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd/CMakeFiles/_cmd.dir/DependInfo.cmake "--color="
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gmake[2]: Entering directory '/builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_cmd'
[  1%] Building CXX object CMakeFiles/_cmd.dir/contrib/mmtf-c/mmtf_parser.cpp.o
[  1%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c.o
[  1%] Building CXX object CMakeFiles/_cmd.dir/build/generated/ShaderText.cpp.o
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/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/build/generated/ShaderText.cpp.o -MF CMakeFiles/_cmd.dir/build/generated/ShaderText.cpp.o.d -o CMakeFiles/_cmd.dir/build/generated/ShaderText.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/build/generated/ShaderText.cpp
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c
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/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
      | ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  273 |        if(ok) {
      |        ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
      | ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  413 |        return ok;
      |        ^~~~~~
[  2%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  970 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  971 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1113 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1114 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1511 |   fread(skip, 1, 8, fp);
      |   ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  619 |     fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
[  2%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 1028 | static int fpexpftoc(char *ftocstr) {
      |            ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 1006 | static int have_keyline(FILE *file, const char *keystring1,
      |            ^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
  962 | static int goto_keyline(FILE *file, ...) {
      |            ^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
  901 | static char *strtoupper(char *s) {
      |              ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
  895 | static int iswhiteline(char *s) {
      |            ^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
  846 | static void eatwhitelines(FILE *file) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
  835 | static void eatline(FILE * fd, int n)
      |             ^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
  711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
  540 | static void angular_momentum_expon(int  *ang_mom_expon,
      |             ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
  507 | static void del_wavefunction(qm_timestep_t *ts) {
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
  490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
      |             ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
  471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
      |                           ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
  437 | static qmdata_t* init_qmdata() {
      |                  ^~~~~~~~~~~
[  2%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  243 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  328 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  346 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  419 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   59 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
[  3%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   64 |   fread(magicchar,sizeof(char),4,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fread(&igarb,sizeof(int),1,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  3%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_timestep(void*, int, molfile_timestep_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:120:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 224 [-Wstringop-truncation]
  120 |     strncpy(numstr, record + 31, 10);
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:125:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 214 [-Wstringop-truncation]
  125 |     strncpy(numstr+10, record + 41, 10);
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:130:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 204 [-Wstringop-truncation]
  130 |     strncpy(numstr+20, record + 51, 10);
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:144:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 242 [-Wstringop-truncation]
  144 |   strncpy(name, record + 13, 5);
      |          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:149:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 236 [-Wstringop-truncation]
  149 |   strncpy(resname, record + 19, 4);
      |          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:167:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 194 [-Wstringop-truncation]
  167 |   strncpy(type, record+61, 5);
      |          ^
[  4%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp
[  4%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  363 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  373 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  266 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  268 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  272 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  295 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  305 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  169 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  179 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  182 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  210 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  213 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  226 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  230 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  234 |       fgets(line, LINESIZE, fd);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  245 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  247 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(fd, "%3s", keyWord);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |   fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   93 |   fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  100 |   fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  109 |   fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  110 |          &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |   fscanf(fd, " %s %f", keyWord, &prod);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  128 |   fscanf(fd, " %s %f", keyWord, &plus);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  135 |   fscanf(fd, " %s %f", keyWord, &sigma);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
  127 |     sprintf(atom->resname, "%d", resid);
      |                             ^~
In function ‘read_car_structure_line’,
    inlined from ‘read_car_structure’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
  127 |     sprintf(atom->resname, "%d", resid);
      |                            ^~~~
In file included from /usr/include/stdio.h:980,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function ‘sprintf’,
    inlined from ‘read_car_structure_line’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
    inlined from ‘read_car_structure’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 12 bytes into a destination of size 8
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[  5%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp
[  5%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c
[  5%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘int read_ccp4_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  495 |         if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  525 |         if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  556 |         if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  588 |         if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  623 |         if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  655 |         if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[  6%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  304 |       fgets(symData, 81, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~
[  6%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:42:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
  546 |     fio_size_t readlen; /* number of bytes actually read            */
      |                ^~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
  609 | static int fio_write_str(fio_fd fd, const char *str) {
      |            ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
  605 | static int fio_read_int32(fio_fd fd, int *i) {
      |            ^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
  459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
      |                   ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  175 |   fgets(readbuf, 1023, cube->fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  181 |   fgets(readbuf, 1023, cube->fd); // skip second header line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  337 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fscanf(cube->fd, "%d", &cube->nsets);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |       fscanf(cube->fd, "%d", &orb);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |     fgets(readbuf, 1023, cube->fd);  // gobble up rest of line
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:107:13: warning: ‘void cube_buildrotmat(cube_t*, float*, float*, float*)’ defined but not used [-Wunused-function]
  107 | static void cube_buildrotmat(cube_t *cube, float *o, float *a, float *b)
      |             ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘open_ccp4_read(char const*, char const*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:279:3: warning: ‘dataOffset’ may be used uninitialized [-Wmaybe-uninitialized]
  279 |   if (dataOffset != (CCP4HDSIZE + symBytes)) {
      |   ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:89:8: note: ‘dataOffset’ was declared here
   89 |   long dataOffset, filesize;
      |        ^~~~~~~~~~
[  7%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  292 |   if (NULL == fgets(fbuffer, 1024, data->file))
      |   ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  295 |     if (NULL == fgets(fbuffer, 1024, data->file))
      |     ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c/mmtf_parser.cpp:1079:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1079 |     fread(buffer, fileLen, 1, file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  669 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘open_cube_read(char const*, char const*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:179:10: warning: ‘__strncat_chk’ output may be truncated copying 240 bytes from a string of length 1023 [-Wstringop-truncation]
  179 |   strncat(voltmpl.dataname, readbuf, 240);      // 240 is max space left after
      |          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
  362 |     strncpy(atom->name, buf, sizeof(atom->name));
      |     ^
[  7%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
  267 |     strncpy(atom->name, buf, sizeof(atom->name));
      |     ^
[  7%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
[  8%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fread(fileHeader, sizeof(short), 19, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
[  8%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c/mmtf_parser.cpp: In function ‘MMTF_parser_fetch_typed_array(msgpack::v2::object const*, unsigned long*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c/mmtf_parser.cpp:873:5: warning: ‘typecheck’ may be used uninitialized [-Wmaybe-uninitialized]
  873 |     if (typecode != typecheck) {
      |     ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c/mmtf_parser.cpp:868:9: note: ‘typecheck’ was declared here
  868 |     int typecheck;
      |         ^~~~~~~~~
[  9%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  240 |   fgets(readbuf, 13, edm->fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   44 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
  133 | static void strnwscpy(char *target, const char *source, const int len) {
      |             ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
[  9%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 1106 |   char word[3][BUFSIZ];
      |        ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 2264 |   char word[7][BUFSIZ];
      |        ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 3573 |   char word[6][BUFSIZ];
      |        ^~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
 1002 | static void print_input_data(qmdata_t *data) {
      |             ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
  109 | static float get_pte_vdw_radius(const int idx)
      |              ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
  102 | static float get_pte_mass(const int idx)
      |              ^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 1028 | static int fpexpftoc(char *ftocstr) {
      |            ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
  901 | static char *strtoupper(char *s) {
      |              ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
  895 | static int iswhiteline(char *s) {
      |            ^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:145:12: warning: ‘int vmd_file_is_executable(const char*)’ defined but not used [-Wunused-function]
  145 | static int vmd_file_is_executable(const char * filename) {
      |            ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  186 |   fread(line3, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
  284 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  285 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
  291 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
  305 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
  307 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
  311 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
  313 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
  318 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
  320 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
  328 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  329 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
  330 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
  354 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |   fread(vertex, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
  356 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
  357 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  358 |   fread(access, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
  359 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
  360 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  361 |   fread(normal, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
  362 |   TRASH;
      |   ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
  371 |     TRASH;
      |     ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  372 |     fread(triangle, 3 * sizeof(int), ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
  373 |     TRASH;
      |     ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
  374 |     TRASH;
      |     ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  375 |     fread(properties, 3 * sizeof(float), nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
  394 |     TRASH;
      |     ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fread(striangle, sizeof(short), 3 * ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
  396 |     TRASH;
      |     ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
  397 |     TRASH;
      |     ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  398 |     fread(properties, sizeof(float), 3 * nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  615 |   strncpy(sys_data->basis_string, data->basis_string,
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
  620 |   strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle));
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  621 |   strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry));
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  622 |   strncpy(sys_data->version_string, data->version_string,
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
 1618 |     strncpy(atm->type, atname, sizeof(atm->type));
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_runtitle’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1459:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1459 |   strncpy(data->runtitle,trimright(buffer),sizeof(data->runtitle));
      |   ^
[ 10%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp
[ 10%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   84 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
  133 | static void strnwscpy(char *target, const char *source, const int len) {
      |             ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1981 |   strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
      |   ^
[ 11%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1818 |   strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
      |   ^
[ 11%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/hash.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/hash.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/hash.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/hash.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/hash.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
 1422 |     strncat(data->basis_string, &data->gbasis[3], 1);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
 1411 |     strncat(data->basis_string, &data->gbasis[2], 1);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra.0’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
 1279 |     strncpy(data->memory,&word[2][0],sizeof(data->memory));
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
 1272 |     strncpy(data->memory,trimright(temp),sizeof(data->memory));
      |     ^
[ 12%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/inthash.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/inthash.c
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  426 |         fgets(buf, n, mf->f);
      |         ~~~~~^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
[ 12%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_input_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
 1682 |     strncpy(atm->type, atname, sizeof(atm->type));
      |     ^
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
  459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
      |                   ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘g96_header(md_file*, char*, int, float*) [clone .constprop.0]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:650:39: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 500 [-Wstringop-truncation]
  650 |         if (title && titlelen) strncpy(title, buf, titlelen);
      |                                       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘get_traj_frame.isra.0’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
  819 |     strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘gro_header(md_file*, char*, int, float*, int*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1018:33: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 500 [-Wstringop-truncation]
 1018 |   if (title && titlelen) strncpy(title, buf, titlelen);
      |                                 ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp: In function ‘open_gro_read(char const*, char const*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:103:12: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 80 [-Wstringop-truncation]
  103 |     strncpy(gmx->meta->title, mdh.title, 80);
      |            ^
[ 13%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp
[ 13%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp
[ 13%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  278 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  357 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  223 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  164 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  176 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  183 |       fgets(line, LINESIZE, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp
[ 14%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  199 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  209 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  127 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   74 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_name
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fgets(line, LINESIZE, fd);  // Read the molecule info
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(line, LINESIZE, fd);  // Read the charge_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
  596 |   molfile_qm_hessian_t *hessian_data;
      |                         ^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1165 |   fscanf(data->file, " Ene= %f\n", &orbenergy);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1166 |   fscanf(data->file, " Spin= %s\n", spin);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1167 |   fscanf(data->file, " Occup= %f\n", &occu);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |           fscanf(data->file, "%d", &natm);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 1006 | static int have_keyline(FILE *file, const char *keystring1,
      |            ^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
  711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
      |            ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
  507 | static void del_wavefunction(qm_timestep_t *ts) {
      |             ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
  490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
      |             ^~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
  109 | static float get_pte_vdw_radius(const int idx)
      |              ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
  102 | static float get_pte_mass(const int idx)
      |              ^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
 1904 |     int last_ctnumber = -1;
      |         ^~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  350 |       strncpy(atom->type, atname, sizeof(atom->type));
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  351 |       strncpy(atom->name, atname, sizeof(atom->name));
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  317 |       strncpy(atom->name, atname,     sizeof(atom->name));
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
  326 |       strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type));
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  132 |    fgets(line, 80, infile);
      |    ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  149 |      fgets(line, 80, infile);
      |      ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |               fgets(line, 80, infile);
      |               ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  161 |      fgets(line, 80, infile); //one more read to keep us in sync
      |      ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  170 |                      fgets(line, 80, infile);
      |                      ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  217 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |                  fgets(line, 80, infile);
      |                  ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp
[ 15%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
  103 |   int i, numatoms;
      |          ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |   fread(&filen, sizeof(namdbin_int32), 1, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c
[ 16%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
  714 |         sprintf(sub, "%03x/", i);
      |                       ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
  714 |         sprintf(sub, "%03x/", i);
      |                      ^~~~~~~
In file included from /usr/include/stdio.h:980,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function ‘sprintf’,
    inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 6
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
  722 |             sprintf(subsub, "%03x", j);
      |                              ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
  722 |             sprintf(subsub, "%03x", j);
      |                             ^~~~~~
In function ‘sprintf’,
    inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 4 and 9 bytes into a destination of size 6
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 17%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp
[ 17%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:80:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   80 |         fgets(buf, 85, file);
      |         ~~~~~^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  257 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |   fscanf(file, " %d", &cur);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parm7struct* read_parm7_header(FILE*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  368 |   fgets(sdum, 512, file);
      |   ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |   fscanf(file, "%s\n", sdum); // "%FLAG"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  378 |   fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  385 |   fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  399 |   fgets(prm->title, sizeof(prm->title), file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  427 |     fgets(sdum, sizeof(sdum), file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  439 |   fscanf(file,parm7,
      |   ~~~~~~^~~~~~~~~~~~
  440 |          &prm->Natom,  &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  441 |          &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  442 |          &prm->Jparm,  &prm->Nparm);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  443 |   fscanf(file, parm7,
      |   ~~~~~~^~~~~~~~~~~~~
  444 |          &prm->Nnb,   &prm->Nres,   &prm->Mbona,  &prm->Mtheta,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  445 |          &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  446 |          &prm->Natyp, &prm->Nphb);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  447 |   fscanf(file, parm7,  &prm->Ifpert, &prm->Nbper,  &prm->Ngper,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  448 |          &prm->Ndper, &prm->Mbper,  &prm->Mgper, &prm->Mdper,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  449 |          &prm->IfBox, &prm->Nmxrs,  &prm->IfCap);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  451 |   fscanf(file,"%8d",&prm->Numextra); //BB
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  435 |           fscanf(file, " " DBLFMT, &prm->Charges[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |           fscanf(file, " " DBLFMT, &prm->Masses[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  510 |           fscanf(file, " " DBLFMT, &prm->Rk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  517 |           fscanf(file, " " DBLFMT, &prm->Req[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  524 |           fscanf(file, " " DBLFMT, &prm->Tk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  531 |           fscanf(file, " " DBLFMT, &prm->Teq[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  538 |           fscanf(file, " " DBLFMT, &prm->Pk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  545 |           fscanf(file, " " DBLFMT, &prm->Pn[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  552 |           fscanf(file, " " DBLFMT, &prm->Phase[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |           fscanf(file, " " DBLFMT, &prm->Solty[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  567 |           fscanf(file, " " DBLFMT, &prm->Cn1[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  575 |           fscanf(file, " " DBLFMT, &prm->Cn2[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  756 |           fscanf(file, " " DBLFMT, &prm->HB12[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  763 |           fscanf(file, " " DBLFMT, &prm->HB6[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  771 |           fscanf(file, " " DBLFMT, &H[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  853 |                 fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  854 |                                 &prm->Box[0], &prm->Box[1], &prm->Box[2]);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  867 |                 fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                 &prm->Natcap, &prm->Cutcap,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  869 |                                 &prm->Xcap, &prm->Ycap, &prm->Zcap);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘read_parm7_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:277:12: warning: ‘__strncpy_chk’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  277 |     strncpy(resnames, buf+4*j, 4);
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:259:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  259 |     strncpy(atom->type, buf+4*j, 4);
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:206:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  206 |     strncpy(atom->name, buf+4*j, 4);
      |            ^
[ 18%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  675 |             sprintf(answer, "%03x/", d1);
      |                                   ^
In function ‘sprintf’,
    inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 9
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
  673 |             sprintf(answer, "%03x/%03x/", d1, d2);
      |                                   ^~~~
In function ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
  673 |             sprintf(answer, "%03x/%03x/", d1, d2);
      |                             ^~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 9 and 19 bytes into a destination of size 9
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 18%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_next_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
  119 |   strncpy(tmp, record, PDB_RECORD_LENGTH);
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
  144 |     strncpy(numstr, record + 30, 8);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
  149 |     strncpy(numstr+10, record + 38, 8);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
  154 |     strncpy(numstr+20, record + 46, 8);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
  159 |     strncpy(numstr+30, record + 54, 6);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
  164 |     strncpy(numstr+40, record + 60, 6);
      |     ^
[ 18%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘open_pdb_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
  190 |     strncpy(date, record + 50, 9);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
  200 |     strncpy(pdbcode, record + 62, 4);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
  443 |   int i, uid;
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
  484 |   int i, count, atomdata, pos, idx, xyzcount, j;
      |                                               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
  503 |   char oldChain[8];
      |        ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  803 |   int bondTable[32];
      |       ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
  807 |   int i, pos, j, k;
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  811 |   char modelNum[8];
      |        ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
  822 |   molfile_atom_t * atom;
      |                    ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
  884 |   int test = parser->nbonds + bnum;
      |       ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  984 |   int bondTable[32];
      |       ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
  988 |   int i, pos, j, k;
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  991 |   char modelNum[8];
      |        ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
 1002 |   molfile_atom_t * atom;
      |                    ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
 1409 |   FILE* fd;
      |         ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_pdb_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
  299 |   strncpy(name, record + 12, 4);
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
  304 |   strncpy(altloc, record + 16, 1);
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
  308 |   strncpy(resname, record + 17, 4);
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
  317 |   strncpy(resid, record + 22, 4);
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
  159 |     strncpy(numstr+30, record + 54, 6);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
  164 |     strncpy(numstr+40, record + 60, 6);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
  330 |     strncpy(segname, record + 72, 4);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
  339 |     strncpy(elementsymbol, record + 76, 2);
      |     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:313:14: warning: ‘float stringToFloat(char*)’ defined but not used [-Wunused-function]
  313 | static float stringToFloat(char * str) {
      |              ^~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘const char* get_pte_label(int)’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
[ 19%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘(anonymous namespace)::read_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1786:22: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
 1786 |               strncpy( ct.particles[to].type, v->second.funct.c_str(),
      |                      ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp: In function ‘read_phi_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp:216:14: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  216 |       strncpy(currNum, currChar, 4);
      |              ^
[ 19%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp
[ 20%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘int read_plt_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  143 |   if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) {
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
[ 20%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
  166 |   char *name, *type;
      |                ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
  166 |   char *name, *type;
      |         ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fread(intHeader, sizeof(int), 5, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fread(floatHeader, sizeof(float), 6, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
  459 |   int i,j,k;
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
 1407 |   int i,j,k;
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
 1541 |   int i,j,k;
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable ‘vert_other’ set but not used [-Wunused-but-set-variable]
  107 |   PlyOtherProp *vert_other=NULL;
      |                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable ‘face_other’ set but not used [-Wunused-but-set-variable]
  108 |   PlyOtherProp *face_other=NULL;
      |                 ^~~~~~~~~~
[ 21%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
  109 |   strncpy(tmp, record, PQR_RECORD_LENGTH);
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1629 |       fread (&len, sizeof(int), 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1631 |       fread (str, len, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
  137 |   strncpy(name, record+12, 4);    name[4] = 0;
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
  138 |   strncpy(resname, record+17, 4); resname[4] = 0;
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
  139 |   strncpy(chain, record+21, 1);   chain[1] = 0;
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
  140 |   strncpy(resid, record+22, 4);   resid[4] = 0;
      |   ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::SitesArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:784:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
  784 |         strncpy(arr, value.substr(1,value.size()-2).c_str(), N);
      |                ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:786:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
  786 |         strncpy(arr, value.c_str(), N);
      |                ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2057 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2063 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2069 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2075 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2081 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2087 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2093 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2099 |       fread (ptr, 8, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
  103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
      |            ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
[ 21%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
 1334 |   line[0] = '\0';
      |   ~~~~~~~~^~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
 1333 |   line = (char *) malloc (sizeof(char) * len);
      |                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::AtomArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:886:16: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  886 |         strncpy( a.name,
      |                ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘ascii_get_element(PlyFile*, char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1520:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
 1520 |         item = elem_data + prop->offset;
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1423:9: note: ‘other_data’ was declared here
 1423 |   char *other_data;
      |         ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1497:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
 1497 |             item += item_size;
      |             ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1413:20: note: ‘item’ was declared here
 1413 |   char *elem_data,*item;
      |                    ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘binary_get_element(PlyFile*, char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1643:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
 1643 |         item = elem_data + prop->offset;
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1555:9: note: ‘other_data’ was declared here
 1555 |   char *other_data;
      |         ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1620:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
 1620 |             item += item_size;
      |             ~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1546:9: note: ‘item’ was declared here
 1546 |   char *item;
      |         ^~~~
[ 21%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
   48 |   double  timesteprst;
      |           ^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   67 |   fgets(title, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |   fgets(line, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~
[ 22%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp
[ 22%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  286 |   fread(datablock, total * sizeof(float), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
[ 23%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp
[ 23%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c
[ 23%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  103 |     strncpy(atom->name, buffer, sizeof(atom->name));
      |     ^
[ 24%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  174 |   for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  180 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  189 |  for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |  for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   77 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  104 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |         fgets(line, 80, infile);
      |         ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  162 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  171 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable ‘o’ set but not used [-Wunused-but-set-variable]
   90 |   float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
      |                      ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable ‘s’ set but not used [-Wunused-but-set-variable]
   90 |   float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
      |                            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘int read_uhbd_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  254 |       if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  102 |   fread(&headersize, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
[ 24%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  282 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
  111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
      |             ^~~~~~~~~~~~~~~~~~~~~~
[ 25%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  239 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  242 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |          fgets(lineptr, LINESIZE, data->file);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
[ 25%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
  111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
      |             ^~~~~~~~~~~~~~~~~~~~~~
[ 26%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
  360 |     strncpy(tmptype, atom->type, sizeof(atom->type));
      |                                        ^
[ 26%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  232 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  246 |   for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  249 |   if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  195 |  for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  198 |  if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   73 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  283 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  228 |   for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |       for (i = 0; i < 2; ++i)  fgets(lineptr, LINESIZE, data->file);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |   for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   89 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |     fgets(lineptr, LINESIZE, poscar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  121 |       fgets(lineptr, LINESIZE, poscar);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
[ 26%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  139 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  144 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
[ 27%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
[ 27%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp
[ 28%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  288 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  365 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  387 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  455 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  250 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
  276 |   int x, y, z, xsize, ysize, zsize, xysize, total;
      |                                             ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
  338 |   int x, y, z, xsize, ysize, zsize, xysize, total;
      |                                             ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:72:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include/vmdconio.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include/vmdconio.h:56:12: warning: ‘int vmdcon_printf(int, const char*, ...)’ defined but not used [-Wunused-function]
   56 | static int vmdcon_printf(int lvl, const char *fmt, ...) {
      |            ^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_open_file_read’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
  538 |         strncat(msg, keyword, 200);
      |         ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
  629 |       strncat(msg, keyword, 200);
      |       ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:143:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 223 [-Wstringop-truncation]
  143 |     strncpy(numstr, record + 32, 10);
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:148:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 213 [-Wstringop-truncation]
  148 |     strncpy(numstr+10, record + 42, 10);
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:153:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 203 [-Wstringop-truncation]
  153 |     strncpy(numstr+20, record + 52, 10);
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:172:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 241 [-Wstringop-truncation]
  172 |   strncpy(name, record + 14, 5);
      |          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:177:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 235 [-Wstringop-truncation]
  177 |   strncpy(resname, record + 20, 4);
      |          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:182:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 154 [-Wstringop-truncation]
  182 |   strncpy(segname, record + 101, 4);
      |          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:197:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 192 [-Wstringop-truncation]
  197 |   strncpy(type, record+63, 5);
      |          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘open_vtk_read(char const*, char const*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:152:10: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 2039 [-Wstringop-truncation]
  152 |   strncpy(vtk->title, inbuf, sizeof(vtk->title) - 1);
      |          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_read_bonds’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
  147 |   sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
      |                                                ^~
[ 28%] Building CXX object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp
[ 28%] Building C object CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o
/usr/bin/gcc -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o -MF CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o.d -o CMakeFiles/_cmd.dir/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c
[ 29%] Building CXX object CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Bezier.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Bezier.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  133 |       strncpy(atom->name, buffer, sizeof(atom->name));
      |       ^
[ 29%] Building CXX object CMakeFiles/_cmd.dir/layer0/Block.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Block.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Block.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Block.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Block.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  408 |         fgets(readbuf, 256, xsf->fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  442 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  446 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  448 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  450 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  473 |                 fgets(readbuf, 256, xsf->fd);
      |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  508 |           fgets(readbuf, 256, xsf->fd);
      |           ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
[ 30%] Building CXX object CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o -MF CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/CarveHelper.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/CarveHelper.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘read_xsf_structure(void*, int*, molfile_atom_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:597:20: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  597 |             strncpy(atom->name, buffer, sizeof(atom->name));
      |                    ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘open_xsf_read(char const*, char const*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:438:22: warning: ‘strncpy’ output may be truncated copying 255 bytes from a string of length 255 [-Wstringop-truncation]
  438 |               strncpy(set->dataname, readbuf, 255);
      |                      ^
[ 30%] Building CXX object CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ContourSurf.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ContourSurf.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/CarveHelper.cpp:8:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/CarveHelper.h: In constructor ‘CarveHelper::CarveHelper(PyMOLGlobals*, float, const float*, std::size_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/CarveHelper.h:23:9: warning: ‘CarveHelper::m_cutoff’ will be initialized after [-Wreorder]
   23 |   float m_cutoff;
      |         ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/CarveHelper.h:22:16: warning:   ‘const float* CarveHelper::m_vertices’ [-Wreorder]
   22 |   const float* m_vertices;
      |                ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/CarveHelper.cpp:20:1: warning:   when initialized here [-Wreorder]
   20 | CarveHelper::CarveHelper(PyMOLGlobals* G, float cutoff, const float* vertices,
      | ^~~~~~~~~~~
[ 31%] Building CXX object CMakeFiles/_cmd.dir/layer0/Crystal.cpp.o
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/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Field.cpp: In function ‘PyObject* FieldAsNumPyArray(CField*, short int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Field.cpp:83:1: warning: label ‘ok_except1’ defined but not used [-Wunused-label]
   83 | ok_except1:
      | ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Field.cpp: In function ‘CField* FieldNewFromPyList(PyMOLGlobals*, PyObject*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Field.cpp:179:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  179 |   ok = ok && I->size() == size;
      |              ~~~~~~~~~~^~~~~~~
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/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Map.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Map.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Map.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Map.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/GenericBuffer.cpp: In destructor ‘virtual GenericBuffer::~GenericBuffer()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/GenericBuffer.cpp:208:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BufferDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  208 |   for (auto i = 0; i < m_desc.size(); ++i) {
      |                    ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/GenericBuffer.cpp: In member function ‘bool GenericBuffer::sepBufferData()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/GenericBuffer.cpp:275:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BufferDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |   for (auto i = 0; i < m_desc.size(); ++i) {
      |                    ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/GenericBuffer.cpp: In member function ‘void VertexBuffer::bind(GLuint, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/GenericBuffer.cpp:427:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BufferDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  427 |     for (auto i = 0; i < m_desc.size(); ++i) {
      |                      ~~^~~~~~~~~~~~~~~
[ 35%] Building CXX object CMakeFiles/_cmd.dir/layer0/Match.cpp.o
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[ 35%] Building CXX object CMakeFiles/_cmd.dir/layer0/Matrix.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Matrix.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Matrix.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Matrix.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Matrix.cpp
[ 36%] Building CXX object CMakeFiles/_cmd.dir/layer0/MemoryDebug.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/MemoryDebug.cpp.o -MF CMakeFiles/_cmd.dir/layer0/MemoryDebug.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/MemoryDebug.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.cpp
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/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.cpp: In function ‘void* VLADeleteRaw(void*, int, unsigned int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.cpp:218:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |       if(index < -old_size)
      |          ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.cpp:230:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |        (index < vla->size) && ((count + index) <= vla->size)) {
      |         ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.cpp: In function ‘void* VLAInsertRaw(void*, int, unsigned int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.cpp:251:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  251 |       if(index < -old_size)
      |          ~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.cpp:258:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  258 |     if(index > old_size)
      |        ~~~~~~^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.cpp:261:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  261 |     if((index >= 0) && (count > 0) && (index <= old_size)) {
      |                                        ~~~~~~^~~~~~~~~~~
[ 36%] Building CXX object CMakeFiles/_cmd.dir/layer0/MyPNG.cpp.o
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/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |                     ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
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/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Parse.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Parse.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Parse.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Parse.cpp
[ 37%] Building CXX object CMakeFiles/_cmd.dir/layer0/Pixmap.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Pixmap.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Pixmap.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Pixmap.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Pixmap.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MyPNG.cpp: In function ‘int MyPNGWrite(pymol::zstring_view, const pymol::Image&, float, int, int, float, float, png_outbuf_t*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MyPNG.cpp:300:20: warning: comparison of integer expressions of different signedness: ‘png_uint_32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  300 |       for(k = 0; k < height; k++)
      |                  ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MyPNG.cpp:341:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  341 |           for(b = 0; b < height; b++) {
      |                      ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MyPNG.cpp:342:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  342 |             for(a = 0; a < width; a++) {
      |                        ~~^~~~~~~
[ 38%] Building CXX object CMakeFiles/_cmd.dir/layer0/PostProcess.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/PostProcess.cpp.o -MF CMakeFiles/_cmd.dir/layer0/PostProcess.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/PostProcess.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/PostProcess.cpp
[ 38%] Building CXX object CMakeFiles/_cmd.dir/layer0/PrintUtils.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/PrintUtils.cpp.o -MF CMakeFiles/_cmd.dir/layer0/PrintUtils.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/PrintUtils.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/PrintUtils.cpp
[ 39%] Building CXX object CMakeFiles/_cmd.dir/layer0/ShaderMgr.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ShaderMgr.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ShaderMgr.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ShaderMgr.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.cpp
[ 39%] Building CXX object CMakeFiles/_cmd.dir/layer0/ShaderPreprocessor.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ShaderPreprocessor.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ShaderPreprocessor.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ShaderPreprocessor.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderPreprocessor.cpp
[ 39%] Building CXX object CMakeFiles/_cmd.dir/layer0/ShaderPrg.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/ShaderPrg.cpp.o -MF CMakeFiles/_cmd.dir/layer0/ShaderPrg.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/ShaderPrg.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderPrg.cpp
[ 40%] Building CXX object CMakeFiles/_cmd.dir/layer0/Sphere.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Sphere.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Sphere.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Sphere.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Sphere.cpp
[ 40%] Building CXX object CMakeFiles/_cmd.dir/layer0/TTT.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/TTT.cpp.o -MF CMakeFiles/_cmd.dir/layer0/TTT.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/TTT.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/TTT.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.cpp:21:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderPrg.cpp:20:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 41%] Building CXX object CMakeFiles/_cmd.dir/layer0/Tetsurf.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Tetsurf.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Tetsurf.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Tetsurf.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Tetsurf.cpp
[ 41%] Building CXX object CMakeFiles/_cmd.dir/layer0/Texture.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Texture.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Texture.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Texture.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Texture.cpp
[ 42%] Building CXX object CMakeFiles/_cmd.dir/layer0/Tracker.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Tracker.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Tracker.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Tracker.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Tracker.cpp
[ 42%] Building CXX object CMakeFiles/_cmd.dir/layer0/Triangle.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Triangle.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Triangle.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Triangle.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Triangle.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Texture.cpp:34:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Texture.cpp: In function ‘bool TextureIsCharTextured(PyMOLGlobals*, int, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Texture.cpp:130:9: warning: unused variable ‘use_shader’ [-Wunused-variable]
  130 |   short use_shader = (short) SettingGetGlobal_b(G, cSetting_use_shaders);
      |         ^~~~~~~~~~
[ 42%] Building CXX object CMakeFiles/_cmd.dir/layer0/Util.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Util.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Util.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Util.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Util.cpp
[ 43%] Building CXX object CMakeFiles/_cmd.dir/layer0/Util2.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer0/Util2.cpp.o -MF CMakeFiles/_cmd.dir/layer0/Util2.cpp.o.d -o CMakeFiles/_cmd.dir/layer0/Util2.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Util2.cpp
[ 43%] Building CXX object CMakeFiles/_cmd.dir/layer0/Vector.cpp.o
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[ 45%] Building CXX object CMakeFiles/_cmd.dir/layer1/Basis.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Basis.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Basis.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Basis.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Basis.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt.h:49,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ccealignmodule.cpp:39:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array2D<T>&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array2d_utils.h:62:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   62 |     for (int i=0; i<M; i++)
      |     ^~~
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array2d_utils.h:68:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   68 |         A = B;
      |         ^
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt.h:50:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array3D<T>&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array3d_utils.h:47:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   47 |     for (int i=0; i<M; i++)
      |     ^~~
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array3d_utils.h:52:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   52 |         A = B;
      |         ^
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt.h:56:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_fortran_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array2D<T>&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   61 |     for (int i=1; i<=M; i++)
      |     ^~~
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_fortran_array2d_utils.h:67:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   67 |         A = B;
      |         ^
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt.h:57:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_fortran_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array3D<T>&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   65 |     for (int i=1; i<=M; i++)
      |     ^~~
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_fortran_array3d_utils.h:70:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   70 |         A = B;
      |         ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp: In function ‘mc::Mesh mc::march(const Field&, float, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp:517:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
  517 |   for (int z = 0; z < zDim; ++z) {
      |                   ~~^~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp:550:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
  550 |   for (int z = 0; z < zEnd; ++z) {
      |                   ~~^~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp:603:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  603 |           if (z == zEnd - 1) {
      |               ~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp:608:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  608 |         if (z == zEnd - 1) {
      |             ~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp: In function ‘void mc::calculateNormals(Mesh&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp:681:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  681 |   for (int i = 0; i < vertexCount; ++i) {
      |                   ~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  686 |   for (int i = 0; i < triangleCount; ++i) {
      |                   ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/marching_cubes.cpp:720:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  720 |   for (int i = 0; i < vertexCount; ++i) {
      |                   ~~^~~~~~~~~~~~~
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/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/ButMode.cpp.o -MF CMakeFiles/_cmd.dir/layer1/ButMode.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/ButMode.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ButMode.cpp
[ 46%] Building CXX object CMakeFiles/_cmd.dir/layer1/CGO.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/CGO.cpp.o -MF CMakeFiles/_cmd.dir/layer1/CGO.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/CGO.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt.h:45:
In member function ‘TNT::Array1D<double>::set_(double*, double*, double const&)’,
    inlined from ‘TNT::Array1D<double>::Array1D(int, double const&)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array1d.h:119:6,
    inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ccealignmodule.cpp:506:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array1d.h:283:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
  283 |                 *p = a;
      |                 ~~~^~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ButMode.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 47%] Building CXX object CMakeFiles/_cmd.dir/layer1/CGOGL.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/CGOGL.cpp.o -MF CMakeFiles/_cmd.dir/layer1/CGOGL.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/CGOGL.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGOGL.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ButMode.cpp:22:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ButMode.cpp: In function ‘void ButModeFree(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CButMode’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ButMode.cpp:144:3: note: in expansion of macro ‘DeleteP’
  144 |   DeleteP(G->ButMode);
      |   ^~~~~~~
[ 47%] Building CXX object CMakeFiles/_cmd.dir/layer1/CGORenderer.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/CGORenderer.cpp.o -MF CMakeFiles/_cmd.dir/layer1/CGORenderer.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/CGORenderer.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGORenderer.cpp
[ 47%] Building CXX object CMakeFiles/_cmd.dir/layer1/COLLADA.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/COLLADA.cpp.o -MF CMakeFiles/_cmd.dir/layer1/COLLADA.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/COLLADA.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/COLLADA.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp:40:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp: In function ‘void CheckAttributesForUsage(const CGO*, AttribDataDesc&, AttribDataDesc&, CGO*, bool&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp:8819:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 8819 |     for (auto idx = 0; idx < attrIdx; ++idx) {
      |                        ~~~~^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp: In function ‘void PopulateOpsIntoStructuresForConversion(std::map<int, int>&, std::map<int, std::map<int, AttribOp*> >&, AttribDataDesc&, AttribDataDesc&, int&, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp:8904:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 8904 |           if (attrOp->incr_vertices != vertsperpickinfo) {
      |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp: In function ‘CGO* CGOConvertToShader(const CGO*, AttribDataDesc&, AttribDataDesc&, int, buffer_layout, bool, int*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp:9236:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9236 |             for (auto idx = 0; idx < attrData.size(); ++idx) {
      |                                ~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp:9251:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9251 |             for (auto idx = 0; idx < attrData.size(); ++idx) {
      |                                ~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGO.cpp:9262:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 9262 |           for (int nxt = 0; nxt < attribOp->incr_vertices; ++nxt) {
      |                             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object CMakeFiles/_cmd.dir/layer1/Camera.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Camera.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Camera.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Camera.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Camera.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/CGOGL.cpp:9:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 48%] Building CXX object CMakeFiles/_cmd.dir/layer1/Character.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Character.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Character.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Character.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Character.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/COLLADA.cpp:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 49%] Building CXX object CMakeFiles/_cmd.dir/layer1/Color.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Color.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Color.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Color.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp
[ 49%] Building CXX object CMakeFiles/_cmd.dir/layer1/Control.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Control.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Control.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Control.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Control.cpp
[ 50%] Building CXX object CMakeFiles/_cmd.dir/layer1/Extrude.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Extrude.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Extrude.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Extrude.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Control.cpp:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:30:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘ObjectGadgetRamp* ColorGetRamp(PyMOLGlobals*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:178:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  178 |     if (index < I->Ext.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘int ColorExtFromPyList(PyMOLGlobals*, PyObject*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:499:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  499 |   for (int a = 0; a < n_ext; ++a) {
      |                   ~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:516:15: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  516 |     if (a_new == I->Ext.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘int ColorFromPyList(PyMOLGlobals*, PyObject*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:567:44: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  567 |     if (partial_restore && I->Color.size() > index) {
      |                            ~~~~~~~~~~~~~~~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:573:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  573 |     if (index >= I->Color.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘int ColorGetIndex(PyMOLGlobals*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:681:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  681 |       if((i < I->Color.size()) && (i >= 0))
      |           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘const char* ColorGetName(PyMOLGlobals*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:762:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  762 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:774:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  774 |     if (a < I->Ext.size()) {
      |         ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘int ColorGetStatus(PyMOLGlobals*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:790:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  790 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘void ColorUpdateFromLut(PyMOLGlobals*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:1693:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1693 |   for(i = 0; i < I->Color.size(); i++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:1697:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1697 |     if(index < I->Color.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘const float* ColorGet(PyMOLGlobals*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:1806:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1806 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘const float* ColorGetRaw(PyMOLGlobals*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:1833:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1833 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In function ‘int ColorGetEncoded(PyMOLGlobals*, int, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:1851:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1851 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ExtRec>]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:302:35:   required from here
  302 |   return findByCaseInsensitiveName(G, G->Color->Ext, name);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:243:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  243 |   for (int a = 0; a < seq.size(); ++a) {
      |                   ~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ColorRec>]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:624:38:   required from here
  624 |     color = findByCaseInsensitiveName(G, I->Color, name);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:243:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  243 |   for (int a = 0; a < seq.size(); ++a) {
      |                   ~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ColorRec>]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:739:42:   required from here
  739 |   int color = findByCaseInsensitivePrefix(G, I->Color, name, best);
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:273:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  273 |   for (int a = 0; a < seq.size(); ++a) {
      |                   ~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ExtRec>]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:741:54:   required from here
  741 |     int const ext_color = findByCaseInsensitivePrefix(G, I->Ext, name, best);
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Color.cpp:273:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  273 |   for (int a = 0; a < seq.size(); ++a) {
      |                   ~~^~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/vla.h:7,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Symmetry.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:22:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Control.cpp: In function ‘void ControlFree(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CControl’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Control.cpp:410:3: note: in expansion of macro ‘DeleteP’
  410 |   DeleteP(G->Control);
      |   ^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp: In function ‘ExtrudeComputeTangents(CExtrude*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp:742:13: warning: ‘MEM <vector(2) float> [(float *)_62]’ may be used uninitialized [-Wmaybe-uninitialized]
  742 |   *(v1++) = *(v++);             /* first segment */
      |             ^~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp:744:13: warning: ‘MEM[(float *)_62 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
  744 |   *(v1++) = *(v++);
      |             ^~~~~~
[ 50%] Building CXX object CMakeFiles/_cmd.dir/layer1/Font.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Font.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Font.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Font.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Font.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp: In function ‘ExtrudeCGOSurfaceTube(CExtrude const*, CGO*, cCylCap, float const*, bool, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp:949:37: warning: ‘start’ may be used uninitialized [-Wmaybe-uninitialized]
  949 |             if(color_override && (b > start) && (b < stop))
      |                                  ~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp:876:7: note: ‘start’ was declared here
  876 |   int start, stop;
      |       ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp:949:46: warning: ‘stop’ may be used uninitialized [-Wmaybe-uninitialized]
  949 |             if(color_override && (b > start) && (b < stop))
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Extrude.cpp:876:14: note: ‘stop’ was declared here
  876 |   int start, stop;
      |              ^~~~
[ 50%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUT.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUT.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUT.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUT.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontGLUT.cpp
[ 51%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUT8x13.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUT8x13.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUT8x13.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUT8x13.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontGLUT8x13.cpp
[ 51%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUT9x15.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUT9x15.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUT9x15.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUT9x15.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontGLUT9x15.cpp
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/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUTHel10.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUTHel10.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUTHel10.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontGLUTHel10.cpp
[ 52%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUTHel12.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUTHel12.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUTHel12.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUTHel12.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontGLUTHel12.cpp
[ 52%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontGLUTHel18.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontGLUTHel18.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontGLUTHel18.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontGLUTHel18.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontGLUTHel18.cpp
[ 53%] Building CXX object CMakeFiles/_cmd.dir/layer1/FontType.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/FontType.cpp.o -MF CMakeFiles/_cmd.dir/layer1/FontType.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/FontType.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontType.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontGLUT.cpp:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 53%] Building CXX object CMakeFiles/_cmd.dir/layer1/ImageUtils.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/ImageUtils.cpp.o -MF CMakeFiles/_cmd.dir/layer1/ImageUtils.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/ImageUtils.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ImageUtils.cpp
[ 54%] Building CXX object CMakeFiles/_cmd.dir/layer1/Movie.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Movie.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Movie.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Movie.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Movie.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/FontType.cpp:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ImageUtils.cpp: In function ‘pymol::Result<pymol::Image> PyMOLImageComposite(PyMOLGlobals*, const pymol::Image&, const pymol::Image&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ImageUtils.cpp:54:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   54 |   for (int i = 0; i < image.getSizeInBytes() / image.getPixelSize(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object CMakeFiles/_cmd.dir/layer1/Ortho.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Ortho.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Ortho.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Ortho.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp
[ 55%] Building CXX object CMakeFiles/_cmd.dir/layer1/P.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/P.cpp.o -MF CMakeFiles/_cmd.dir/layer1/P.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/P.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Movie.cpp:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:34:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp: In function ‘void OrthoAddOutput(PyMOLGlobals*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:1099:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
 1099 |       if (cc >= OrthoLineLength - 6) { /* fail safe */
      |           ~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp: In function ‘std::unique_ptr<pymol::Image> makeBgGridImage(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:1321:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1321 |   for (unsigned j = 0; j != tmpImg->getHeight(); ++j) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:1322:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1322 |     for (unsigned i = 0; i != tmpImg->getWidth(); ++i, q += 4) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp: In function ‘void OrthoDoDraw(PyMOLGlobals*, const OrthoDrawInfo&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:1873:8: warning: variable ‘double_pump’ set but not used [-Wunused-but-set-variable]
 1873 |   auto double_pump = SettingGet<bool>(G, cSetting_stereo_double_pump_mono);
      |        ^~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp:59:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp: In function ‘int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp:873:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
  873 |       if (strlen(valstr) > ap->maxlen) {
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp:897:18: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  897 |       if (valint == -1 && PyErr_Occurred())
      |           ~~~~~~~^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp: In function ‘int PAutoBlock(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp:2337:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
 2337 |     if (SavedThread[a].id == id) {
      |         ~~~~~~~~~~~~~~~~~~^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp: In function ‘int PIsGlutThread()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp:2363:39: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare]
 2363 |   return (PyThread_get_thread_ident() == P_glut_thread_id);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp:2471:13: warning: ‘void PLockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 2471 | static void PLockAPIWhileBlocked(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp:2460:13: warning: ‘void PUnlockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 2460 | static void PUnlockAPIWhileBlocked(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:1783:13: warning: ‘void OrthoDrawFontTextureDebug(PyMOLGlobals*, CGO*)’ defined but not used [-Wunused-function]
 1783 | static void OrthoDrawFontTextureDebug(PyMOLGlobals* G, CGO* orthoCGO)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:775:13: warning: ‘void OrthoKeyCmmd(PyMOLGlobals*, unsigned char)’ defined but not used [-Wunused-function]
  775 | static void OrthoKeyCmmd(PyMOLGlobals* G, unsigned char k)
      |             ^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp: In function ‘PLabelAtomAlt(PyMOLGlobals*, AtomInfoType*, char const*, char const*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.cpp:323:12: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  323 |     strncpy(label, origexpr, OrthoLineLength);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 55%] Building CXX object CMakeFiles/_cmd.dir/layer1/PConv.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/PConv.cpp.o -MF CMakeFiles/_cmd.dir/layer1/PConv.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/PConv.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PConv.cpp
[ 55%] Building CXX object CMakeFiles/_cmd.dir/layer1/Picking.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Picking.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Picking.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Picking.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Picking.cpp
In file included from /usr/include/string.h:548,
                 from /usr/include/python3.12/Python.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/os_python.h:34,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:24:
In function ‘strcat’,
    inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:340:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘__strcat_chk’ accessing 4611686018427387981 or more bytes at offsets [76, 261196] and [-4611686018427387904, 4611686018427387903] may overlap 1 byte at offset [76, 9223372036854775807] [-Wrestrict]
  130 |   return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strcat’,
    inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ortho.cpp:357:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘__strcat_chk’ accessing 4611686018427387981 or more bytes at offsets [76, 261196] and [-4611686018427387904, 4611686018427387903] may overlap 1 byte at offset [76, 9223372036854775807] [-Wrestrict]
  130 |   return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Building CXX object CMakeFiles/_cmd.dir/layer1/Pop.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Pop.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Pop.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Pop.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Pop.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Pop.cpp:22:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Pop.cpp: In function ‘void PopFree(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CPop’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Pop.cpp:54:3: note: in expansion of macro ‘DeleteP’
   54 |   DeleteP(G->Pop);
      |   ^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PConv.cpp: In function ‘int PConvPyListToBitmask(PyObject*, int*, ov_size)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PConv.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
   83 |   for(int i = 0; i < ll; i++)
      |                  ~~^~~~
[ 56%] Building CXX object CMakeFiles/_cmd.dir/layer1/PyMOLObject.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/PyMOLObject.cpp.o -MF CMakeFiles/_cmd.dir/layer1/PyMOLObject.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/PyMOLObject.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PConv.cpp: In function ‘PyObject* PConvLabPosVecToPyList(const std::vector<LabPosType>&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PConv.cpp:1194:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1194 |     for (int a = 0; a < vec.size(); a++) {
      |                     ~~^~~~~~~~~~~~
[ 57%] Building CXX object CMakeFiles/_cmd.dir/layer1/Ray.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Ray.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Ray.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Ray.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp
[ 57%] Building CXX object CMakeFiles/_cmd.dir/layer1/Rep.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Rep.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Rep.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Rep.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Rep.cpp
[ 57%] Building CXX object CMakeFiles/_cmd.dir/layer1/Scene.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Scene.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Scene.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Scene.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.cpp:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.cpp: In function ‘int ObjectMotion(pymol::CObject*, MViewAction, int, int, float, float, int, float, int, int, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.cpp:193:15: warning: ignoring return value of ‘constexpr const _Tp& std::max(const _Tp&, const _Tp&) [with _Tp = int]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  193 |       std::max(0, first);
      |       ~~~~~~~~^~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_uninitialized.h:63,
                 from /usr/include/c++/14/memory:69,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/os_python.h:23,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.cpp:17:
/usr/include/c++/14/bits/stl_algobase.h:257:5: note: declared here
  257 |     max(const _Tp& __a, const _Tp& __b)
      |     ^~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:38:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp: In function ‘void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6070:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6070 |       if(x_stop > width)
      |          ~~~~~~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6072:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6072 |       if(y_stop > height)
      |          ~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6153:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6153 |       for(y = 0; y < height; y++)
      |                  ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6154:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6154 |         for(x = 0; x < width; x++) {
      |                    ~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6165:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6165 |           if(x < (width - 1)) {
      |              ~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6176:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6176 |           if(y < (height - 1)) {
      |              ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6237:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6237 |             for(y = 0; y < height; y++)
      |                        ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6238:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6238 |               for(x = 0; x < width; x++) {
      |                          ~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6248:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6248 |                   if(x < (width - 1)) {
      |                      ~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6260:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6260 |                   if(y < (height - 1)) {
      |                      ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6311:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6311 |           for(y = 0; y < height; y++){
      |                      ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6331:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6331 |             for(x = 0; x < width; x++) {
      |                        ~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6350:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6350 |                   if(x < (width - 1)) {
      |                      ~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6364:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6364 |                   if(y < (height - 1)) {
      |                      ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6378:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6378 |                   if(x && (y < (height - 1))) {
      |                            ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6385:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6385 |                   if(y && (x < (width - 1))) {
      |                            ~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6392:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6392 |                   if((y < (height - 1)) && (x < (width - 1))) {
      |                       ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6392:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6392 |                   if((y < (height - 1)) && (x < (width - 1))) {
      |                                             ~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6548:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6548 |       for(y = 0; y < height; y++) {
      |                  ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:6549:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6549 |         for(x = 0; x < width; x++) {
      |                    ~~^~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Rep.cpp:30:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.cpp:34:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.cpp: In function ‘int SceneViewEqual(float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.cpp:134:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
  134 |   for(i = 0; i < cSceneViewSize; i++) {
      |              ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.cpp: In function ‘void SceneFree(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.cpp:4166:3: warning: deleting object of polymorphic class type ‘CScene’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
 4166 |   delete G->Scene;
      |   ^~~~~~~~~~~~~~~
[ 58%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneMouse.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneMouse.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneMouse.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneMouse.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.cpp
[ 58%] Building CXX object CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o -MF CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/ScenePicking.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp:4:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp: In function ‘void PickColorConverterSetRgbaBitsFromGL(PyMOLGlobals*, PickColorConverter&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp:67:26: warning: comparison of integer expressions of different signedness: ‘GLint’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   67 |   if (currentFrameBuffer != G->ShaderMgr->defaultBackbuffer.framebuffer) {
      |       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp:80:26: warning: comparison of integer expressions of different signedness: ‘GLint’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
   80 |   if (currentFrameBuffer != G->ShaderMgr->defaultBackbuffer.framebuffer) {
      |       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.cpp:4:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp: In function ‘RayTraceThread(_CRayThreadInfo*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:3608:39: warning: ‘hl’ may be used uninitialized [-Wmaybe-uninitialized]
 3608 |           compute_background_for_pixel(bkrd_uc, isOutsideInY,
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
 3609 |               bg_image_mode, bg_image_tilesize, bg_rgb, bg_image_linear,
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3610 |               (unsigned char*) T->bkrd_data, T->bgWidth, T->bgHeight,
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3611 |               x, wr, hl, hpixelx, orig_opaque_back );
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Ray.cpp:3269:9: note: ‘hl’ was declared here
 3269 |   float hl;
      |         ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.cpp: In function ‘void SceneClickPickBond(PyMOLGlobals*, int, int, int, const NamedPicking&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.cpp:513:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  513 |     if (atIndex == LastPicked.src.index)
      |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In function ‘SceneRenderPickingMultiPick(PyMOLGlobals*, SceneUnitContext*, Multipick*, unsigned int)’,
    inlined from ‘SceneRenderPicking(PyMOLGlobals*, int, ClickSide, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp:323:32:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp:257:7: warning: ‘previous.src.index’ may be used uninitialized [-Wmaybe-uninitialized]
  257 |       if (pik->src.index != previous.src.index ||
      |       ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp: In function ‘SceneRenderPicking(PyMOLGlobals*, int, ClickSide, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScenePicking.cpp:246:11: note: ‘previous.src.index’ was declared here
  246 |   Picking previous;
      |           ^~~~~~~~
[ 59%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneRay.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRay.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.cpp: In function ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.cpp:455:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
  455 |           " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
      |                                ^~                      ~~~~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4152,
                 from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/include/pymol/zstring_view.h:12,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.h:4,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.cpp:1:
In function ‘snprintf’,
    inlined from ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneMouse.cpp:454:11:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRay.cpp:2:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 59%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneRender.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp
[ 60%] Building CXX object CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SceneView.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneView.cpp
[ 60%] Building CXX object CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o -MF CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/ScrollBar.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/ScrollBar.cpp
[ 60%] Building CXX object CMakeFiles/_cmd.dir/layer1/Seq.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Seq.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Seq.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Seq.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp
[ 61%] Building CXX object CMakeFiles/_cmd.dir/layer1/Setting.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Setting.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Setting.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Setting.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp:11:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp: In function ‘void DoRendering(PyMOLGlobals*, CScene*, GridInfo*, int, int, float*, SceneUnitContext*, float, bool, bool, SceneRenderWhich, SceneRenderOrder)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp:946:32: warning: comparison of integer expressions of different signedness: ‘GLint’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
  946 |     if (currentDrawFramebuffer == G->ShaderMgr->defaultBackbuffer.framebuffer) {
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp:979:36: warning: comparison of integer expressions of different signedness: ‘GLint’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
  979 |         if (currentDrawFramebuffer == G->ShaderMgr->defaultBackbuffer.framebuffer) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp:1106:36: warning: comparison of integer expressions of different signedness: ‘GLint’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
 1106 |         if (currentDrawFramebuffer ==
      |             ~~~~~~~~~~~~~~~~~~~~~~~^~
 1107 |             G->ShaderMgr
      |             ~~~~~~~~~~~~            
 1108 |                 ->defaultBackbuffer.framebuffer) { // if rendering to screen, need to
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp:1130:37: warning: comparison of integer expressions of different signedness: ‘GLint’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
 1130 |         if ((currentDrawFramebuffer == G->ShaderMgr->defaultBackbuffer.framebuffer) &&
      |              ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp: In function ‘void SceneInitializeViewport(PyMOLGlobals*, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SceneRender.cpp:1657:30: warning: comparison of integer expressions of different signedness: ‘GLint’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare]
 1657 |       if (currentFrameBuffer ==
      |           ~~~~~~~~~~~~~~~~~~~^~
 1658 |           G->ShaderMgr->defaultBackbuffer.framebuffer) { // if writing to screen, then
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object CMakeFiles/_cmd.dir/layer1/Shaker.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Shaker.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Shaker.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Shaker.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Shaker.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.cpp:29:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp: In function ‘int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp:61:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) {
      |                                ~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp: In member function ‘virtual void CSeq::reshape(int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp:114:28: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  114 |       if(I->Row[a].ext_len > I->Size)
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp: In member function ‘virtual void CSeq::draw(CGO*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp:392:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  392 |         if(max_len < row->ext_len)
      |            ~~~~~~~~^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/vla.h:7,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Symmetry.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.h:21,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp:22:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp: In function ‘void SeqFree(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CSeq’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp:731:3: note: in expansion of macro ‘DeleteP’
  731 |   DeleteP(G->Seq);
      |   ^~~~~~~
[ 62%] Building CXX object CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SymOp.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOp.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.cpp:717:13: warning: ‘void SeqPurgeRowVLA(PyMOLGlobals*)’ defined but not used [-Wunused-function]
  717 | static void SeqPurgeRowVLA(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.cpp: In function ‘void SettingUniqueResetAll(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.cpp:501:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SettingUniqueEntry>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  501 |   for (int a = 2; a < I->entry.size(); a++) {
      |                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.cpp: In function ‘void SettingGenerateSideEffects(PyMOLGlobals*, int, const char*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.cpp:2020:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2020 |     if (SettingGetGlobal_b(G, cSetting_precomputed_lighting))
      |     ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.cpp:2022:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2022 |       SceneInvalidate(G);
      |       ^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOp.cpp: In member function ‘pymol::SymOp::to_string[abi:cxx11]() const’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
   37 |   std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
      |                                ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
   37 |   std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
      |                          ^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4152,
                 from /usr/include/c++/14/string:54,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOp.h:9,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOp.cpp:7:
In function ‘snprintf’,
    inlined from ‘pymol::SymOp::to_string[abi:cxx11]() const’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOp.cpp:37:16:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 17 bytes into a destination of size 8
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SymOpPConv.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOpPConv.cpp
[ 63%] Building CXX object CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o -MF CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/SymOpTools.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/SymOpTools.cpp
[ 63%] Building CXX object CMakeFiles/_cmd.dir/layer1/Symmetry.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Symmetry.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Symmetry.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Symmetry.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Symmetry.cpp
[ 63%] Building CXX object CMakeFiles/_cmd.dir/layer1/Text.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Text.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Text.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Text.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Text.cpp
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/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/View.cpp.o -MF CMakeFiles/_cmd.dir/layer1/View.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/View.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/View.cpp
[ 65%] Building CXX object CMakeFiles/_cmd.dir/layer1/Wizard.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer1/Wizard.cpp.o -MF CMakeFiles/_cmd.dir/layer1/Wizard.cpp.o.d -o CMakeFiles/_cmd.dir/layer1/Wizard.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Wizard.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Wizard.cpp:34:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Wizard.cpp: In member function ‘virtual void CWizard::draw(CGO*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Wizard.cpp:727:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  727 |     else
      |     ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Wizard.cpp:729:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  729 |       drawTopEdge();
      |       ^~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Wizard.cpp:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Wizard.cpp: In function ‘void WizardFree(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CWizard’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Wizard.cpp:845:3: note: in expansion of macro ‘DeleteP’
  845 |   DeleteP(G->Wizard);
      |   ^~~~~~~
[ 65%] Building CXX object CMakeFiles/_cmd.dir/layer2/AssemblyHelpers.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/AssemblyHelpers.cpp.o -MF CMakeFiles/_cmd.dir/layer2/AssemblyHelpers.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/AssemblyHelpers.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AssemblyHelpers.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Text.cpp:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 65%] Building CXX object CMakeFiles/_cmd.dir/layer2/AtomInfo.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/AtomInfo.cpp.o -MF CMakeFiles/_cmd.dir/layer2/AtomInfo.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/AtomInfo.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.cpp
[ 66%] Building CXX object CMakeFiles/_cmd.dir/layer2/AtomInfoHistory.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/AtomInfoHistory.cpp.o -MF CMakeFiles/_cmd.dir/layer2/AtomInfoHistory.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/AtomInfoHistory.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfoHistory.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.cpp:37:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.cpp: In function ‘bool AtomResiFromResv(char*, size_t, int, char)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.cpp:787:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  787 |     return snprintf(resi, size, "%d%c", resv, inscode) < size;
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.cpp:788:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  788 |   return snprintf(resi, size, "%d", resv) < size;
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
[ 66%] Building CXX object CMakeFiles/_cmd.dir/layer2/BondTypeHistory.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/BondTypeHistory.cpp.o -MF CMakeFiles/_cmd.dir/layer2/BondTypeHistory.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/BondTypeHistory.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/BondTypeHistory.cpp
[ 67%] Building CXX object CMakeFiles/_cmd.dir/layer2/CifFile.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/CifFile.cpp.o -MF CMakeFiles/_cmd.dir/layer2/CifFile.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/CifFile.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifFile.cpp
[ 67%] Building CXX object CMakeFiles/_cmd.dir/layer2/CifMoleculeReader.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/CifMoleculeReader.cpp.o -MF CMakeFiles/_cmd.dir/layer2/CifMoleculeReader.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/CifMoleculeReader.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp
[ 68%] Building CXX object CMakeFiles/_cmd.dir/layer2/CoordSet.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/CoordSet.cpp.o -MF CMakeFiles/_cmd.dir/layer2/CoordSet.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/CoordSet.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CoordSet.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifFile.cpp: In function ‘std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > pymol::integer_packing_decode(const std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, int, int, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifFile.cpp:585:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  585 |   for (int i = 0, j = 0; i < packedInts.size(); ++i, ++j) {
      |                          ~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifFile.cpp: In function ‘std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > pymol::string_array_decode(const std::vector<unsigned char>&, std::vector<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >&, const std::string&, const std::vector<unsigned char>&, std::vector<std::map<std::__cxx11::basic_string<char>, msgpack::v2::object> >&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifFile.cpp:668:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  668 |   for (int i = 1; i < decodedOffsets.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifFile.cpp:675:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::variant<signed char, short int, int, unsigned char, short unsigned int, unsigned int, float, double, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  675 |   for (int i = 0; i < indices.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CoordSet.cpp:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp:24:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CoordSet.cpp: In member function ‘int CoordSet::extendIndices(int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CoordSet.cpp:1599:18: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
 1599 |     if (NAtIndex < nAtom) {
      |         ~~~~~~~~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp: In member function ‘void seqvec_t::set(int, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp:109:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |     if (i > size())
      |         ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp: In member function ‘const char* seqvec_t::get(int) const’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |     if (i < 1 || i > size())
      |                  ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CoordSet.cpp: In function ‘void CoordSetAtomToPDBStrVLA(PyMOLGlobals*, char**, int*, const AtomInfoType*, const float*, int, const PDBInfoRec*, const double*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CoordSet.cpp:1013:14: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation]
 1013 |       strncpy(anisoline, "ANISOU", 6);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp: In function ‘CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const pymol::cif_data*, const AtomInfoType*, const CoordSet*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp:801:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  801 |       while (j < c_src_len * c_it->size()) {
      |              ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
[ 68%] Building CXX object CMakeFiles/_cmd.dir/layer2/DistSet.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/DistSet.cpp.o -MF CMakeFiles/_cmd.dir/layer2/DistSet.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/DistSet.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/DistSet.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/DistSet.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifMoleculeReader.cpp:31:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h: In member function ‘bond_dict_t::operator[](char const*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
   93 |     strncpy(s, s_, sizeof(s));
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/DistSet.cpp: In function ‘int DistSetGetLabelVertex(DistSet*, int, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/DistSet.cpp:43:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::array<float, 3> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   43 |   if (at >= 0 && at < I->LabCoord.size()) {
      |                  ~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/DistSet.cpp: In member function ‘pymol::Result<std::array<float, 3> > DistSet::getLabelOffset(int) const’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/DistSet.cpp:59:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   59 |   if (atm < 0 || atm >= this->LabPos.size()) {
      |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h: In member function ‘res_bond_dict_t::add_alt_name(char const*, char const*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h:41:12: warning: ‘strncpy’ specified bound 4 equals destination size [-Wstringop-truncation]
   41 |     strncpy(s, name, sizeof(halfkey_t));
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h: In function ‘read_chem_comp_bond_dict(pymol::cif_data const*, bond_dict_t&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h:41:12: warning: ‘strncpy’ specified bound 4 equals destination size [-Wstringop-truncation]
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h:41:12: warning: ‘strncpy’ specified bound 4 equals destination size [-Wstringop-truncation]
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
   93 |     strncpy(s, s_, sizeof(s));
      |            ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h: In member function ‘bond_dict_t::get(PyMOLGlobals*, char const*, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
[ 68%] Building CXX object CMakeFiles/_cmd.dir/layer2/GadgetSet.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/GadgetSet.cpp.o -MF CMakeFiles/_cmd.dir/layer2/GadgetSet.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/GadgetSet.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/GadgetSet.cpp
[ 69%] Building CXX object CMakeFiles/_cmd.dir/layer2/HydrogenAdder.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/HydrogenAdder.cpp.o -MF CMakeFiles/_cmd.dir/layer2/HydrogenAdder.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/HydrogenAdder.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/HydrogenAdder.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/GadgetSet.cpp:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/HydrogenAdder.cpp: In function ‘int ObjectMoleculeAddSeleHydrogensRefactored(ObjectMolecule*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/HydrogenAdder.cpp:286:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  286 |   for (unsigned atm = 0; atm < n_atom_old; atm++) {
      |                          ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/HydrogenAdder.cpp:304:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  304 |   for (unsigned atm = 0; atm < n_atom_old; ++atm) {
      |                          ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/HydrogenAdder.cpp:352:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  352 |     for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
      |                            ~~~~^~~~~~~~~~~~
[ 69%] Building CXX object CMakeFiles/_cmd.dir/layer2/MmodTyping.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/MmodTyping.cpp.o -MF CMakeFiles/_cmd.dir/layer2/MmodTyping.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/MmodTyping.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/MmodTyping.cpp
[ 70%] Building CXX object CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o -MF CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/MmtfMoleculeReader.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/MmtfMoleculeReader.cpp
[ 70%] Building CXX object CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o -MF CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/Mol2Typing.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/Mol2Typing.cpp
[ 71%] Building CXX object CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o -MF CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/MolV3000.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/MolV3000.cpp
[ 71%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectAlignment.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectAlignment.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/MmtfMoleculeReader.cpp: In function ‘ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/MmtfMoleculeReader.cpp:183:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  183 |   for (int entityIndex = 0; entityIndex < container->entityListCount; ++entityIndex) {
      |                             ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/MmtfMoleculeReader.cpp:186:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  186 |     for (int i = 0; i < entity->chainIndexListCount; ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/MmtfMoleculeReader.cpp:240:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  240 |         for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) {
      |                                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/MmtfMoleculeReader.cpp:304:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  304 |   for (int l = 0; l < container->bondAtomListCount / 2; ++l) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 71%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectCGO.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectCGO.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectCGO.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectCGO.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp
[ 72%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectCallback.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectCallback.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectCallback.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectCallback.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCallback.cpp
[ 72%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectCurve.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectCurve.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectCurve.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectCurve.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectAlignment.cpp:30:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp: In function ‘PyObject* ObjectCGOAllStatesAsPyList(ObjectCGO*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:54:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   54 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp: In function ‘int ObjectCGOAllStatesFromPyList(ObjectCGO*, PyObject*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:105:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  105 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::invalidate(cRep_t, cRepInv_t, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:206:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  206 |     if((state >= 0) && (state < I->State.size())) {
      |                         ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::render(RenderInfo*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:503:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  503 |         if (!ray)
      |         ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:505:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  505 |           ObjectCGORenderState(G, pass, ray, I, info, sobj, color, ramp, use_shader, cgo_lighting);
      |           ^~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:24:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.h: In copy constructor ‘ObjectCGOState::ObjectCGOState(const ObjectCGOState&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.h:28:17: warning: ‘ObjectCGOState::G’ will be initialized after [-Wreorder]
   28 |   PyMOLGlobals* G;
      |                 ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.h:27:25: warning:   ‘pymol::cache_ptr<CGO> ObjectCGOState::renderCGO’ [-Wreorder]
   27 |   pymol::cache_ptr<CGO> renderCGO;
      |                         ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:532:1: warning:   when initialized here [-Wreorder]
  532 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
      | ^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.h:29:58: warning: ‘ObjectCGOState::hasOpaque’ will be initialized after [-Wreorder]
   29 |   bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
      |                                                          ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.h:29:44: warning:   ‘bool ObjectCGOState::cgo_lighting’ [-Wreorder]
   29 |   bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
      |                                            ^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:532:1: warning:   when initialized here [-Wreorder]
  532 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
      | ^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromCGO(PyMOLGlobals*, ObjectCGO*, CGO*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:617:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  617 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGODefine(PyMOLGlobals*, ObjectCGO*, PyObject*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:682:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  682 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:665:7: warning: variable ‘size_n’ set but not used [-Wunused-but-set-variable]
  665 |   int size_n;
      |       ^~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromFloatArray(PyMOLGlobals*, ObjectCGO*, float*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCGO.cpp:740:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  740 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCallback.cpp:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:6:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp: In member function ‘void ObjectCurveState::updateRawCGO()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:93:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::BezierSplinePoint>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   93 |   for (int i = 1; i < bezierPoints.size(); ++i) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:103:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::BezierSplinePoint>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  103 |   for (int i = 0; i < bezierPoints.size(); ++i) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:120:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::BezierSplinePoint>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  120 |     if (i != bezierPoints.size() - 1) {
      |         ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp: In member function ‘virtual void ObjectCurve::render(RenderInfo*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:230:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCurveState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |     if (state >= m_states.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp: In function ‘PyObject* BezierSplineAsPyList(const pymol::BezierSpline&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:406:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::BezierSplinePoint>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  406 |   for (int i = 0; i < bezPts.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp: In member function ‘PyObject* ObjectCurveState::asPyList() const’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:415:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::BezierSpline>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  415 |   for (int i = 0; i < splines.size(); i++) {
      |                   ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp: In member function ‘PyObject* ObjectCurve::statesAsPyList() const’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:425:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCurveState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  425 |   for (int a = 0; a < m_states.size(); a++) {
      |                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectCurve.cpp:41:13: warning: ‘void ValidateCGO(CGO&, const ObjectCurveState&, float)’ defined but not used [-Wunused-function]
   41 | static void ValidateCGO(
      |             ^~~~~~~~~~~
[ 73%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectDist.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectDist.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectDist.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectDist.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp
[ 73%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectGadget.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectGadget.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectGadget.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectGadget.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectGadget.cpp
[ 73%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectGadgetRamp.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectGadgetRamp.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectGadgetRamp.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectGadgetRamp.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectGadgetRamp.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 74%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectGroup.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectGroup.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectGroup.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectGroup.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectGroup.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp: In function ‘int ObjectDistMoveWithObject(ObjectDist*, ObjectMolecule*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |   for (int i=0; i<I->DSet.size(); i++) {
      |                 ~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp: In function ‘void ObjectDistUpdateExtents(ObjectDist*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp:136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |   for(int a = 0; a < I->DSet.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp: In function ‘PyObject* ObjectDistDSetAsPyList(ObjectDist*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp:148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  148 |   for(int a = 0; a < I->DSet.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp: In function ‘int ObjectDistDSetFromPyList(ObjectDist*, PyObject*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp:165:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  165 |     for(int a = 0; a < I->DSet.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp: In member function ‘virtual void ObjectDist::update()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |   for(int a = 0; a < I->DSet.size(); a++)
      |                  ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp: In function ‘void ObjectDistInvalidateRep(ObjectDist*, cRep_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectDist.cpp:257:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  257 |   for(a = 0; a < I->DSet.size(); a++)
      |              ~~^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectGadget.cpp:29:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectGadgetRamp.cpp:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 74%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectMap.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectMap.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectMap.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectMap.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp
[ 75%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectMesh.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectMesh.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectMesh.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectMesh.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp
[ 75%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectMolecule.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectMolecule.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectMolecule.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectMolecule.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp
[ 76%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectMolecule2.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectMolecule2.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectMolecule2.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectMolecule2.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:36:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapValidXtal(ObjectMap*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:134:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  134 |   if((state >= 0) && (state < I->State.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapTrim(ObjectMap*, int, float*, float*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:915:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  915 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapDouble(ObjectMap*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:932:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  932 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapHalve(ObjectMap*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:947:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  947 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘void ObjectMapRegeneratePoints(ObjectMap*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:1190:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1190 |   for (i=0; i<om->State.size();i++){
      |             ~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘PyObject* ObjectMapAllStatesAsPyList(ObjectMap*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:1280:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1280 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapAllStatesFromPyList(ObjectMap*, PyObject*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:1438:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1438 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapNewCopy(PyMOLGlobals*, const ObjectMap*, ObjectMap**, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:1510:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1510 |       for(state = 0; state < src->State.size(); state++) {
      |                      ~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:1519:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1519 |       if(source_state < src->State.size()) {
      |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMapState* ObjectMapStatePrime(ObjectMap*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1536 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘void ObjectMapUpdateExtents(ObjectMap*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:1549:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1549 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In member function ‘virtual void ObjectMap::invalidate(cRep_t, cRepInv_t, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:1675:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1675 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2298:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
 2298 |   if(bytes < 256 * sizeof(int)) {
      |      ~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2308:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2308 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2943:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2943 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapXPLORStrToMap(ObjectMap*, char*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:3217:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3217 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapFLDStrToMap(ObjectMap*, char*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:3438:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3438 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapBRIXStrToMap(ObjectMap*, char*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:3767:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3767 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4173:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 4173 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadCCP4(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4695:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4695 |       if(state < I->State.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘int ObjectMapACNTStrToMap(ObjectMap*, char*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:5246:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5246 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadXPLOR(PyMOLGlobals*, ObjectMap*, const char*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:5558:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5558 |         if(state < I->State.size()) {
      |            ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyBrick(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:5713:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5713 |     if(I->State.size() <= state) {
      |        ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyMap(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:5811:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5811 |     if(I->State.size() <= state) {
      |        ~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:33:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeFillOpenValences(ObjectMolecule*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:3549:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘signed char’ [-Wsign-compare]
 3549 |       if((nn >= ai->valence) || (!flag))
      |           ~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In function ‘pymol::Result<> ObjectMoleculeAddBondByIndices(ObjectMolecule*, unsigned int, unsigned int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:4346:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 4346 |   if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
      |       ~~~~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:4346:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 4346 |   if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
      |                           ~~~~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In member function ‘bool ObjectMolecule::atomHasAnyCoordinates(size_t) const’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:11774:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
11774 |   for (size_t i = 0; i < NCSet; ++i) {
      |                      ~~^~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:43:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:3764:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3764 |     for (unsigned i = 0; i < cs->NIndex; ++i) {
      |                          ~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp: In lambda function:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:3793:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
 3793 |         if (i <= j && !symop)
      |             ~~^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:3898:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3898 |       for (unsigned i = 0; i < cs->NIndex; ++i) {
      |                            ~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:3914:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3914 |     for (unsigned a = 0; a < cs->NTmpBond; ++a) {
      |                          ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:3964:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3964 |     for (unsigned a = 0; a < cs->NTmpLinkBond; ++a) {
      |                          ~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp: In member function ‘ObjectMesh::update()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:508:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
  508 |         "ObjectMeshUpdate-Error: map '%s' has been deleted.\n",
      |                                       ^~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:541:38: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
  541 |             " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
      |                                      ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp: In function ‘ObjectMeshDump(ObjectMesh*, char const*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMesh.cpp:333:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
  333 |       " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
      |                         ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
[ 76%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectMolecule3.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectMolecule3.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectMolecule3.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectMolecule3.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule3.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:5984:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
 5984 |       " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
      |                        ^~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/python3.12/Python.h:24,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/os_python.h:34,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:21:
In function ‘snprintf’,
    inlined from ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:5983:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**) [clone .constprop.0]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:7597:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
 7597 |     " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
      |                                     ^~      ~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:49:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:7645:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
 7645 |         strncpy(atInfo[a].elem, cc, cElemNameLen);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule3.cpp: In function ‘std::vector<int> ObjectMoleculeGetMolMappingVec(const ObjectMolecule&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule3.cpp:42:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   42 |   for (size_t b = 0; b < objmol.NBond; ++b) {
      |                      ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule3.cpp: In function ‘void ObjectMoleculePBCUnwrap(ObjectMolecule&, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule3.cpp:151:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  151 |       for (unsigned atm = 0; atm != objmol.NAtom; ++atm) {
      |                              ~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp: In function ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
  335 |         " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
      |                           ^~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/python3.12/Python.h:24,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/os_python.h:34,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:24:
In function ‘snprintf’,
    inlined from ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule2.cpp:334:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 26 and 291 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeLoadRSTFile(PyMOLGlobals*, ObjectMolecule*, char const*, int, int, char)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:1407:10: warning: ‘buffer’ may be used uninitialized [-Wmaybe-uninitialized]
 1407 |     mfree(buffer);
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:1304:9: note: ‘buffer’ was declared here
 1304 |   char *buffer, *p;
      |         ^~~~~~
[ 76%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectSlice.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectSlice.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectSlice.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectSlice.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4291:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
 4291 |     " ObjectMap: %s\n", cc ENDFB(I->G);
      |                  ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4290:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4291:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
 4291 |     " ObjectMap: %s\n", cc ENDFB(I->G);
      |                  ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4290:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In member function ‘ObjectMolecule::update()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10623:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10623 |               " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
      |                                                                                  ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float const*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10749:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10749 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |                                           ^~
10750 |               buffer, v[0], v[1], v[2], state + 1, mode, 0);
      |               ~~~~~~                       
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10749:21: note: directive argument in the range [-2147483647, 2147483647]
10749 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:10749:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024
10749 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10750 |               buffer, v[0], v[1], v[2], state + 1, mode, 0);
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2962:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2962 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2961:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2971:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2971 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2970:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2977:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2977 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:2976:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:3059:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 3059 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:3058:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4804:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMap.cpp:4836:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 77%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectSurface.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:33:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In function ‘PyObject* ObjectSliceAllStatesAsPyList(ObjectSlice*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:78:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   78 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::invalidate(cRep_t, cRepInv_t, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:210:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  210 |   for(a = 0; a < State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:633:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  633 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In function ‘void ObjectSliceDrag(ObjectSlice*, int, int, float*, float*, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:679:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  679 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In function ‘int ObjectSliceGetVertex(ObjectSlice*, int, int, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:750:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  750 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::render(RenderInfo*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:925:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  925 |       if(state < I->State.size())
      |          ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:967:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  967 |         if(cur_state >= I->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:981:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  981 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |     if(cur_state >= I->State.size())
      |        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In function ‘ObjectSliceState* ObjectSliceStateGetActive(ObjectSlice*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:1244:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1244 |     if(state < I->State.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In function ‘ObjectSlice* ObjectSliceFromMap(PyMOLGlobals*, ObjectSlice*, ObjectMap*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:1285:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1285 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In function ‘void ObjectSliceRecomputeExtent(ObjectSlice*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:1362:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1362 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
[ 77%] Building CXX object CMakeFiles/_cmd.dir/layer2/ObjectVolume.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/ObjectVolume.cpp.o -MF CMakeFiles/_cmd.dir/layer2/ObjectVolume.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/ObjectVolume.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:35:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In function ‘PyObject* ObjectSurfaceAllStatesAsPyList(ObjectSurface*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:84:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   84 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:237:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |     if(state < I->State.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::invalidate(cRep_t, cRepInv_t, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:282:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  282 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceInvalidateMapName(ObjectSurface*, const char*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:312:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  312 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In function ‘ObjectSurface* ObjectSurfaceFromBox(PyMOLGlobals*, ObjectSurface*, ObjectMap*, int, int, float*, float*, float, cIsosurfaceMode, float, pymol::vla<float>&&, cIsosurfaceSide, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:1042:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1042 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceSetLevel(ObjectSurface*, float, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:1138:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1138 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp: In member function ‘ObjectSlice::update()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
  639 |           "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
      |                                          ^~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:44:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
  650 |             " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
      |                                       ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
[ 78%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepAngle.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepAngle.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepAngle.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepAngle.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepAngle.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:38:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In function ‘PyObject* ObjectVolumeAllStatesAsPyList(ObjectVolume*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:133:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  133 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeAllStatesFromPyList(ObjectVolume*, PyObject*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:254:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  254 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeInvalidateMapName(ObjectVolume*, const char*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:319:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  319 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::invalidate(cRep_t, cRepInv_t, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:347:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  347 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::update()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:408:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  408 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:446:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  446 |         for (i = 0; i < vs->Ramp.size(); i += 5) {
      |                     ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::render(RenderInfo*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:765:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  765 |   for(a = 0; a < I->State.size(); ++a) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In function ‘ObjectVolume* ObjectVolumeFromXtalSym(PyMOLGlobals*, ObjectVolume*, ObjectMap*, CSymmetry*, int, int, float*, float*, float, int, float, float*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:1125:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1125 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In function ‘void ObjectVolumeRecomputeExtent(ObjectVolume*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:1226:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In function ‘ObjectSurfaceDump(ObjectSurface*, char const*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:269:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
  269 |         " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
      |                              ^~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:45:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
In function ‘ObjectMoleculeXYZStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**)’,
    inlined from ‘ObjectMoleculeReadStr(PyMOLGlobals*, ObjectMolecule*, char const**, cLoadType_t, int, int, int, int, char*, short, _OVLexicon*)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:8569:43:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.cpp:2916:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
 2916 |         strncpy(ai->elem, cc, cElemNameLen);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: At global scope:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:663:15: warning: ‘size_t createPreintegrationTexture(PyMOLGlobals*, const float*, int)’ defined but not used [-Wunused-function]
  663 | static size_t createPreintegrationTexture(PyMOLGlobals * G, const float *Table, const int count)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp: In member function ‘ObjectSurface::update()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectSurface.cpp:494:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
  494 |               " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
      |                                           ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepAngle.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp: In function ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:80:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
   80 |       "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
      |                                 ^~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/python3.12/Python.h:24,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/os_python.h:34,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:20:
In function ‘snprintf’,
    inlined from ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectVolume.cpp:79:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 46 and 301 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 78%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepCartoon.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepCartoon.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepCartoon.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepCartoon.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp
[ 78%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o
[ 79%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDihedral.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDihedral.cpp
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepCylBond.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCylBond.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:34:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 79%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDistDash.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDistDash.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp: In function ‘Rep* RepCartoonNew(CoordSet*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:3746:11: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class CCInOut’; use assignment or value-initialization instead [-Wclass-memaccess]
 3746 |     memset(car,      0, sizeof(*car)      * nAtIndex);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:45:7: note: ‘class CCInOut’ declared here
   45 | class CCInOut {
      |       ^~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDihedral.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCylBond.cpp:32:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:29:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:472:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:509:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:519:36,
    inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:338:23:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:461:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  461 |   int i = *out;
      |           ^~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.h:25,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CoordSet.h:25,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:36:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:518:5: note: ‘out’ was declared here
  518 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:472:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:509:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:519:36,
    inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:339:23:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:461:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  461 |   int i = *out;
      |           ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:518:5: note: ‘out’ was declared here
  518 |   V out;
      |     ^~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDistDash.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp: In function ‘do_ring(PyMOLGlobals*, nuc_acid_data*, int, int*, ObjectMolecule*, CoordSet*, float, CGO*, int, float, int, int, int, float, float, int*, float*, float)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:1008:65: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
 1008 |                     float ladder_alpha = 1.0f - AtomSettingGetWD(G, ai_i[i], cSetting_cartoon_transparency, 1.0f - alpha);
      |                                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepCartoon.cpp:462:11: note: ‘i’ was declared here
  462 |       int i;
      |           ^
[ 80%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDistLabel.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDistLabel.cpp
[ 80%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepDot.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDot.cpp
[ 81%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepEllipsoid.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepEllipsoid.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDistLabel.cpp:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDot.cpp:32:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 81%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepLabel.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepLabel.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepLabel.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepLabel.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepLabel.cpp
[ 81%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepMesh.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepMesh.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepMesh.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepMesh.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepMesh.cpp
[ 82%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepNonbonded.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepNonbonded.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepNonbonded.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepNonbonded.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepNonbonded.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/vla.h:7,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Symmetry.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/CoordSet.h:22,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDot.h:21,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDot.cpp:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDot.cpp: In function ‘RepDotDoNew(CoordSet*, cRepDot_t, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDot.cpp:463:46: warning: ‘vn’ may be used uninitialized [-Wmaybe-uninitialized]
  463 |     I->VN = ReallocForSure(I->VN, float, (vn - I->VN));
      |                                           ~~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepDot.cpp:263:14: note: ‘vn’ was declared here
  263 |   float *v, *vn;
      |              ^~
[ 82%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepNonbondedSphere.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepNonbondedSphere.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepNonbondedSphere.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepNonbondedSphere.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepNonbondedSphere.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepMesh.cpp:29:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepLabel.cpp:31:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepNonbonded.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepNonbondedSphere.cpp:30:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 83%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepRibbon.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepRibbon.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepRibbon.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepRibbon.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepRibbon.cpp
[ 83%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepSphere.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepSphere.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepSphere.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepSphere.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSphere.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepMesh.cpp:24:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepMesh.cpp: In function ‘RepMeshNew(CoordSet*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepMesh.cpp:1063:13: warning: ‘field’ may be used uninitialized [-Wmaybe-uninitialized]
 1063 |     DeleteP(field);
      |             ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepMesh.cpp:725:13: note: ‘field’ was declared here
  725 |   Isofield *field;
      |             ^~~~~
[ 84%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepSphereGenerate.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepSphereGenerate.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepSphereGenerate.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepSphereGenerate.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSphereGenerate.cpp
[ 84%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepSphereImmediate.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepSphereImmediate.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepSphereImmediate.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepSphereImmediate.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSphereImmediate.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepRibbon.cpp:29:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSphere.cpp:34:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSphereGenerate.cpp:20:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepRibbon.cpp: In function ‘RepRibbonNew(CoordSet*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepRibbon.cpp:422:15: warning: ‘MEM <vector(2) float> [(float *)_706]’ may be used uninitialized [-Wmaybe-uninitialized]
  422 |     *(v1++) = *(v++);           /* first segment */
      |               ^~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepRibbon.cpp:424:15: warning: ‘MEM[(float *)_706 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
  424 |     *(v1++) = *(v++);
      |               ^~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSphereImmediate.cpp:20:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 84%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepSurface.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepSurface.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepSurface.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepSurface.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSurface.cpp
[ 85%] Building CXX object CMakeFiles/_cmd.dir/layer2/RepWireBond.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/RepWireBond.cpp.o -MF CMakeFiles/_cmd.dir/layer2/RepWireBond.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/RepWireBond.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepWireBond.cpp
[ 85%] Building CXX object CMakeFiles/_cmd.dir/layer2/Sculpt.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/Sculpt.cpp.o -MF CMakeFiles/_cmd.dir/layer2/Sculpt.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/Sculpt.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/Sculpt.cpp
[ 86%] Building CXX object CMakeFiles/_cmd.dir/layer2/SculptCache.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/SculptCache.cpp.o -MF CMakeFiles/_cmd.dir/layer2/SculptCache.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/SculptCache.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/SculptCache.cpp
[ 86%] Building CXX object CMakeFiles/_cmd.dir/layer2/SideChainHelper.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/SideChainHelper.cpp.o -MF CMakeFiles/_cmd.dir/layer2/SideChainHelper.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/SideChainHelper.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/SideChainHelper.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSurface.cpp:35:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepWireBond.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/Sculpt.cpp:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSurface.cpp: In function ‘void RepSurfaceSmoothEdges(RepSurface*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSurface.cpp:4701:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4701 |     for (auto j = 0; j < edges[i].size(); j += 3) {
      |                      ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSurface.cpp:4713:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4713 |     for (auto j = 0; j < edges[i].size(); j += 3) {
      |                      ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/RepSurface.cpp:4724:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4724 |     for (auto i = 0; i < unique_edges.size(); i += 2) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.h:25,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.h:24,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/SideChainHelper.h:9,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/SideChainHelper.cpp:10:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:472:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:509:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:519:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/SideChainHelper.cpp:47:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:461:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  461 |   int i = *out;
      |           ^~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.h:25:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:518:5: note: ‘out’ was declared here
  518 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:472:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:509:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:519:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/SideChainHelper.cpp:49:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:461:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  461 |   int i = *out;
      |           ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:518:5: note: ‘out’ was declared here
  518 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:472:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:509:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:519:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/SideChainHelper.cpp:55:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:461:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  461 |   int i = *out;
      |           ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:518:5: note: ‘out’ was declared here
  518 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:472:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:509:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:519:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/SideChainHelper.cpp:57:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:461:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  461 |   int i = *out;
      |           ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:518:5: note: ‘out’ was declared here
  518 |   V out;
      |     ^~~
[ 86%] Building CXX object CMakeFiles/_cmd.dir/layer2/VFont.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer2/VFont.cpp.o -MF CMakeFiles/_cmd.dir/layer2/VFont.cpp.o.d -o CMakeFiles/_cmd.dir/layer2/VFont.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/VFont.cpp
[ 87%] Building CXX object CMakeFiles/_cmd.dir/layer3/AtomIterators.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/AtomIterators.cpp.o -MF CMakeFiles/_cmd.dir/layer3/AtomIterators.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/AtomIterators.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/AtomIterators.cpp
[ 87%] Building CXX object CMakeFiles/_cmd.dir/layer3/CifDataValueFormatter.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/CifDataValueFormatter.cpp.o -MF CMakeFiles/_cmd.dir/layer3/CifDataValueFormatter.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/CifDataValueFormatter.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/CifDataValueFormatter.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/AtomIterators.cpp: In member function ‘virtual bool SeleAtomIterator::next()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/AtomIterators.cpp:65:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   65 |   while ((++a) < I->Table.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/AtomIterators.cpp: In member function ‘virtual bool SeleCoordIterator::next()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/AtomIterators.cpp:133:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  133 |   for (a++; a < I->Table.size(); a++) {
      |             ~~^~~~~~~~~~~~~~~~~
[ 88%] Building CXX object CMakeFiles/_cmd.dir/layer3/Editor.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/Editor.cpp.o -MF CMakeFiles/_cmd.dir/layer3/Editor.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/Editor.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp
[ 88%] Building CXX object CMakeFiles/_cmd.dir/layer3/Executive.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/Executive.cpp.o -MF CMakeFiles/_cmd.dir/layer3/Executive.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/Executive.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp
[ 89%] Building CXX object CMakeFiles/_cmd.dir/layer3/ExecutivePython.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/ExecutivePython.cpp.o -MF CMakeFiles/_cmd.dir/layer3/ExecutivePython.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/ExecutivePython.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/ExecutivePython.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:29:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:38:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp: In function ‘pymol::Result<> EditorSelect(PyMOLGlobals*, const char*, const char*, const char*, const char*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:778:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable]
  778 |   int result = false;
      |       ^~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/ExecutivePython.cpp:1:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/ExecutivePython.cpp: In function ‘pymol::Result<> ExecutiveSetRawAlignment(PyMOLGlobals*, pymol::zstring_view, PyObject*, pymol::zstring_view, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/ExecutivePython.cpp:171:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
  171 |   for(size_t c = 0; c < n_cols; ++c) {
      |                     ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/ExecutivePython.cpp:180:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
  180 |     for(size_t i = 0; i < n_idx; ++i) {
      |                       ~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsosurfaceEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:990:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  990 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsomeshEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, float)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:1136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveVolume(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:1309:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1309 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSmooth(PyMOLGlobals*, const char*, int, int, int, int, int, int, float, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:6186:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
 6186 |       for (int c = 0; c < n_atom; ++c) {
      |                       ~~^~~~~~~~
[ 89%] Building CXX object CMakeFiles/_cmd.dir/layer3/Interactions.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/Interactions.cpp.o -MF CMakeFiles/_cmd.dir/layer3/Interactions.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/Interactions.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Interactions.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveMapSet(PyMOLGlobals*, const char*, int, const char*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:6356:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 6356 |             if(obj->State.size() > max_n_state)
      |                ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:6467:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6467 |                     if(src_state < obj->State.size()) {
      |                        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘void ExecutiveRenderSelectionsFromTargets(PyMOLGlobals*, bool, int, int, int, GridInfo*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:8341:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 8341 |         if (I->selIndicatorsCGO = optimized) {
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘float ExecutiveRMSPairs(PyMOLGlobals*, const std::vector<SelectorTmp>&, int, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11154:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11154 |   for(a = 0; a < pairs; a++) {
      |              ~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11159:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11159 |     if(a < (pairs - 1))
      |        ~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveColor(PyMOLGlobals*, const char*, const char*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12528:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
12528 |   int ok = false;
      |       ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14196:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14196 |             for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
      |                                    ~~~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14223:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14223 |             for (unsigned atm = 0; atm < new_obj->NAtom; ++atm) {
      |                                    ~~~~^~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:52:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In lambda function:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  100 |         else \
      |         ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14324:7: note: in expansion of macro ‘ListDelete’
14324 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  102 |           (Elem)->Link = nullptr; \
      |           ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14324:7: note: in expansion of macro ‘ListDelete’
14324 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In lambda function:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  100 |         else \
      |         ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14336:7: note: in expansion of macro ‘ListDelete’
14336 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  102 |           (Elem)->Link = nullptr; \
      |           ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14336:7: note: in expansion of macro ‘ListDelete’
14336 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In member function ‘virtual int CExecutive::click(int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15027:68: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15027 |               if(((panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15028:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15028 |                  ((!panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In member function ‘virtual int CExecutive::release(int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15316:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15316 |                (((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15317:66: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15317 |                 ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level))) {
      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15458:70: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15458 |                   if(((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15459:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15459 |                      ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15494:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15494 |                   if(!((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1))) {
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/vla.h:7,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Symmetry.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:27:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘void ExecutiveFree(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CExecutive’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:16446:3: note: in expansion of macro ‘DeleteP’
16446 |   DeleteP(G->Executive);
      |   ^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSliceNew(PyMOLGlobals*, const char*, const char*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:16757:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
16757 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In instantiation of ‘ExecutiveUpdateObjectsImpl(PyMOLGlobals*, const pymol::CObject&, std::unordered_set<const pymol::CObject*>&)::<lambda(const auto:3&, const auto:4&)> [with auto:3 = ObjectMolecule*; auto:4 = const ObjectDist*]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:17125:27:   required from here
17125 |         if (is_mol_in_dist(mol, measure)) {
      |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:17107:21: warning: loop variable ‘ds’ creates a copy from type ‘const pymol::copyable_ptr<DistSet>’ [-Wrange-loop-construct]
17107 |     for (const auto ds : dist->DSet) {
      |                     ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:17107:21: note: use reference type to prevent copying
17107 |     for (const auto ds : dist->DSet) {
      |                     ^~
      |                     &
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In instantiation of ‘ExecutiveUpdateObjectsImpl(PyMOLGlobals*, const pymol::CObject&, std::unordered_set<const pymol::CObject*>&)::<lambda(const auto:3&, const auto:4&)> [with auto:3 = const ObjectMolecule*; auto:4 = ObjectDist*]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:17134:27:   required from here
17134 |         if (is_mol_in_dist(mol, measure)) {
      |             ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:17107:21: warning: loop variable ‘ds’ creates a copy from type ‘const pymol::copyable_ptr<DistSet>’ [-Wrange-loop-construct]
17107 |     for (const auto ds : dist->DSet) {
      |                     ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:17107:21: note: use reference type to prevent copying
17107 |     for (const auto ds : dist->DSet) {
      |                     ^~
      |                     &
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:39:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/TrackerList.h: In instantiation of ‘pymol::TrackerAdapter<T>::TrackerAdapterIterator<IsConst>::TrackerAdapterIterator(CTracker*, int) [with bool IsConst = false; T = SpecRec]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/TrackerList.h:99:29:   required from ‘pymol::TrackerAdapter<T>::iterator pymol::TrackerAdapter<T>::begin() [with T = SpecRec; iterator = pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>]’
   99 |   iterator begin() { return iterator(m_tracker, m_list_id); }
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:204:62:   required from here
  204 |   for (auto& rec : ExecutiveGetSpecRecsFromPattern(G, pattern)) {
      |                                                              ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/TrackerList.h:80:15: warning: ‘pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_tracker’ will be initialized after [-Wreorder]
   80 |     CTracker* m_tracker;
      |               ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/TrackerList.h:79:9: warning:   ‘int pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_iter_id’ [-Wreorder]
   79 |     int m_iter_id = -1;
      |         ^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/TrackerList.h:35:14: warning:   when initialized here [-Wreorder]
   35 |     explicit TrackerAdapterIterator(CTracker* tracker, int list_id)
      |              ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp: In function ‘EditorDefineExtraPks(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:337:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
  337 |     sprintf(buffer, "(byres %s)", name);
      |                             ^~    ~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256
  337 |     sprintf(buffer, "(byres %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:339:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
  339 |     sprintf(buffer, "(bychain %s)", name);
      |                               ^~    ~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256
  339 |     sprintf(buffer, "(bychain %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:341:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
  341 |     sprintf(buffer, "(byobject %s)", name);
      |                                ^~    ~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:341:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256
  341 |     sprintf(buffer, "(byobject %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 89%] Building CXX object CMakeFiles/_cmd.dir/layer3/MaeExportHelpers.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/MaeExportHelpers.cpp.o -MF CMakeFiles/_cmd.dir/layer3/MaeExportHelpers.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/MaeExportHelpers.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MaeExportHelpers.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Interactions.cpp: In function ‘int pymol::PrepareNeighborTables(PyMOLGlobals*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Interactions.cpp:708:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  708 |   for (int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp: In function ‘EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:1935:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
 1935 |         " Editor: grabbing (%s).", name ENDFB(G);
      |                             ^~     ~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Editor.cpp:42:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
[ 90%] Building CXX object CMakeFiles/_cmd.dir/layer3/MoleculeExporter.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/MoleculeExporter.cpp.o -MF CMakeFiles/_cmd.dir/layer3/MoleculeExporter.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/MoleculeExporter.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MoleculeExporter.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MaeExportHelpers.cpp:17:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:23,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MaeExportHelpers.cpp:11:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:472:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:509:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:519:36,
    inlined from ‘SettingGet<bool>(PyMOLGlobals*, SeleCoordIterator const&, int)bool’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MaeExportHelpers.cpp:26:26,
    inlined from ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MaeExportHelpers.cpp:75:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Setting.h:461:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  461 |   int i = *out;
      |           ^~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h: In function ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer2/AtomInfo.h:518:5: note: ‘out’ was declared here
  518 |   V out;
      |     ^~~
[ 90%] Building CXX object CMakeFiles/_cmd.dir/layer3/MovieScene.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/MovieScene.cpp.o -MF CMakeFiles/_cmd.dir/layer3/MovieScene.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/MovieScene.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MovieScene.cpp
[ 91%] Building CXX object CMakeFiles/_cmd.dir/layer3/PlugIOManager.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/PlugIOManager.cpp.o -MF CMakeFiles/_cmd.dir/layer3/PlugIOManager.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/PlugIOManager.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Movie.h:24,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MovieScene.cpp:11:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/MoleculeExporter.cpp:24:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp:29:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp: In function ‘ObjectMap* PlugIOManagerLoadVol(PyMOLGlobals*, ObjectMap*, const char*, int, int, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp:411:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  411 |             if(obj->State.size() <= state) {
      |                ~~~~~~~~~~~~~~~~~~^~~~~~~~
In function ‘ExecutiveGetAdjustedSelectionWidth(PyMOLGlobals*, bool)’,
    inlined from ‘ExecutiveRenderSelections(PyMOLGlobals*, int, int, GridInfo*)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:8414:50:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:8192:36: warning: ‘width’ may be used uninitialized [-Wmaybe-uninitialized]
 8192 |     width = static_cast<int>(width * 1.44f);
      |                              ~~~~~~^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveRenderSelections(PyMOLGlobals*, int, int, GridInfo*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:8180:7: note: ‘width’ was declared here
 8180 |   int width;
      |       ^~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveRemoveAtoms(PyMOLGlobals*, char const*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:9120:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
 9120 |                 " Remove: eliminated %d atoms in model \"%s\".\n",
      |                                                          ^~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:94:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, char const*, char const*, char const*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11551:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11551 |                 " Setting: %s set for %d bonds in object \"%s\".\n",
      |                            ^~
11552 |                 name, nSet, obj->Name ENDF(G);
      |                 ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11551:17: note: directive argument in the range [1, 2147483647]
11551 |                 " Setting: %s set for %d bonds in object \"%s\".\n",
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, char const*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11632:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11632 |               " Getting: %s for %d bonds in object \"%s\".\n",
      |                          ^~
11633 |               name, nSet, obj->Name ENDF(G);
      |               ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11632:15: note: directive argument in the range [1, 2147483647]
11632 |               " Getting: %s for %d bonds in object \"%s\".\n",
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetBondSetting(PyMOLGlobals*, int, _object*, char const*, char const*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11732:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11732 |                   " Setting: %s set for %d bonds in object \"%s\".\n",
      |                                                              ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveUnsetBondSetting(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11811:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11811 |               " Setting: %s unset for %d bonds in object \"%s\".\n",
      |                          ^~
11812 |               name, nSet, rec->obj->Name ENDF(G);
      |               ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11811:15: note: directive argument in the range [1, 2147483647]
11811 |               " Setting: %s unset for %d bonds in object \"%s\".\n",
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, char const*, pymol::CObject*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12353:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12353 |                   " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                              ^~
12354 |                   name, value2, obj->Name, state + 1 ENDF(G);
      |                   ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12353:19: note: directive argument in the range [1, 2147483647]
12353 |                   " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12345:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12345 |                   " Setting: %s set to %s in object \"%s\".\n",
      |                              ^~
12346 |                   name, value2, obj->Name ENDF(G);
      |                   ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12324:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12324 |           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
      |                             ^~                ~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetSettingFromString(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12256:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12256 |                         " Setting: %s set for %d atoms in object \"%s\".\n",
      |                                    ^~
12257 |                         name, op.i4, rec->obj->Name ENDF(G);
      |                         ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12224:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12224 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                                ^~
12225 |                     name, value2, nObj, state + 1 ENDF(G);
      |                     ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12224:21: note: directive argument in the range [1, 2147483647]
12224 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12224:21: note: directive argument in the range [1, 2147483647]
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12221:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12221 |                     " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
      |                                ^~                              ~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12221:21: note: directive argument in the range [1, 2147483647]
12221 |                     " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12288:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12288 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                                    ^~
12289 |                         name, value2, rec->obj->Name, state + 1 ENDF(G);
      |                         ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12288:25: note: directive argument in the range [1, 2147483647]
12288 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12280:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12280 |                         " Setting: %s set to %s in object \"%s\".\n",
      |                                    ^~
12281 |                         name, value2, rec->obj->Name ENDF(G);
      |                         ~~~~        
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12184:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12184 |           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
      |                             ^~                ~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp: In function ‘PlugIOManagerLoad’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp:941:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
  941 |         " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
      |                                                                 ^~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/python3.12/Python.h:24,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/os_python.h:34,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp:21:
In function ‘snprintf’,
    inlined from ‘PlugIOManagerLoad’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/PlugIOManager.cpp:940:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 58 and 313 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 91%] Building CXX object CMakeFiles/_cmd.dir/layer3/RingFinder.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/RingFinder.cpp.o -MF CMakeFiles/_cmd.dir/layer3/RingFinder.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/RingFinder.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/RingFinder.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, CSymmetry const&, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:5982:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
 5982 |       " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
      |                                           ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:5973:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
 5973 |       " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
      |                                              ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/RingFinder.cpp: In member function ‘void AbstractRingFinder::recursion(int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/RingFinder.cpp:23:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   23 |     } else if (depth < m_indices.size() - 1) {
      |                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
[ 92%] Building CXX object CMakeFiles/_cmd.dir/layer3/Seeker.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/Seeker.cpp.o -MF CMakeFiles/_cmd.dir/layer3/Seeker.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/Seeker.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSpectrum(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, float, float, int, int, pymol::zstring_view, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:4786:24: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
 4786 |                 strncpy(value_s, raw_ptr, sizeof(value_e));
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp:29:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveBond(PyMOLGlobals*, char const*, char const*, int, int, int, pymol::zstring_view)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:9471:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
 9471 |                   " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
      |                                                     ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:9484:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
 9484 |                   " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
      |                                                                   ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:9496:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
 9496 |                   " Unbond: %d bonds removed from model \"%s\".\n",
      |                                                           ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp: In function ‘void SeekerRefresh(PyMOLGlobals*, std::vector<CSeqRow>&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp:485:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  485 |   for(int b = 0; b < nRow; b++) {
      |                  ~~^~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp:1150:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1150 |           if(row->len < min_pad) {
      |              ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp:1186:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1186 |           if(row->len < min_pad) {
      |              ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp: In lambda function:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp:1248:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
 1248 |             for(int i = 0; i < str_size; i++){
      |                            ~~^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp:1930:27: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1930 |           if(row->ext_len < stop)
      |              ~~~~~~~~~~~~~^~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/vla.h:7,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Symmetry.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Seq.h:21,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp:26:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp: In function ‘void SeekerFree(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CSeeker’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Seeker.cpp:1964:3: note: in expansion of macro ‘DeleteP’
 1964 |   DeleteP(G->Seeker);
      |   ^~~~~~~
[ 92%] Building CXX object CMakeFiles/_cmd.dir/layer3/Selector.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/Selector.cpp.o -MF CMakeFiles/_cmd.dir/layer3/Selector.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/Selector.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetSetting(PyMOLGlobals*, int, _object*, pymol::zstring_view, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12004:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
12004 |                           " Setting: %s set for %d atoms in object \"%s\".\n",
      |                                                                      ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11915:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11915 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                                          ^~
11916 |                     name, value, nObj, state + 1 ENDF(G);
      |                           ~~~~~           
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11915:21: note: directive argument in the range [1, 2147483647]
11915 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11915:21: note: directive argument in the range [1, 2147483647]
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11912:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11912 |                     " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
      |                                          ^~                          ~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11912:21: note: directive argument in the range [1, 2147483647]
11912 |                     " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12036:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
12036 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                                              ^~
12037 |                         name, value, rec->obj->Name, state + 1 ENDF(G);
      |                               ~~~~~           
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12036:25: note: directive argument in the range [1, 2147483647]
12036 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12029:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
12029 |                         " Setting: %s set to %s in object \"%s\".\n",
      |                                              ^~
12030 |                         name, value, rec->obj->Name ENDF(G);
      |                               ~~~~~           
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:11871:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11871 |           PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
      |                                       ^~            ~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12465:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12465 |                       " Setting: %s unset for %d atoms in object \"%s\".\n",
      |                                                                    ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12487:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12487 |                         " Setting: %s unset in object \"%s\", state %d.\n",
      |                                                         ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12487:25: note: directive argument in the range [1, 2147483647]
12487 |                         " Setting: %s unset in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:12481:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12481 |                         " Setting: %s unset in object \"%s\".\n",
      |                                                         ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:41:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 92%] Building CXX object CMakeFiles/_cmd.dir/layer3/SelectorTmp.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/SelectorTmp.cpp.o -MF CMakeFiles/_cmd.dir/layer3/SelectorTmp.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/SelectorTmp.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/SelectorTmp.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In member function ‘virtual bool SelectorAtomIterator::next()’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:180:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  180 |   if ((++a) >= selector->Table.size())
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘bool SelectorIsSelectionDiscrete(PyMOLGlobals*, SelectorID_t, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1023:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1077:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1077 |   while(a < I->Table.size()) {
      |         ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1101:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1101 |       while(a1 < I->Table.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘const char* SelectorGetNameFromIndex(PyMOLGlobals*, SelectorID_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1514:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |   for(int a = 1; a < I->Info.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1648:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1648 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1675:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1675 |             while(a1 < I->Table.size()) {
      |                   ~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1869:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1869 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:2682:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2682 |     for(b = 0; b < n_used; b++) {
      |                ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:2698:16: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2698 |   for(a = 0; a < n_used; a++) {
      |              ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:2710:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2710 |     for(b = 0; b < n_used; b++) {
      |                ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:2758:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
 2758 |     for(b = 0; b < n_used; b++) {       /* update selection indices */
      |                ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:2763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2763 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:2767:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
 2767 |       for(b = 0; b < n_used; b++) {
      |                  ~~^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘PyObject* SelectorSecretsAsPyList(PyMOLGlobals*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:2868:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2868 |   for(int a = 0; a < I->Info.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘PyObject* SelectorAsPyList(PyMOLGlobals*, SelectorID_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:2947:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2947 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorCountStates(PyMOLGlobals*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3441:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3441 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorCheckIntersection(PyMOLGlobals*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3465:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3465 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorCountAtoms(PyMOLGlobals*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3483:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3483 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3498:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3498 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, SelectorID_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3584:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3584 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘void SelectorLogSele(PyMOLGlobals*, const char*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3643:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3643 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3808:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3808 |   for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                          ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3838:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3838 |   for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                          ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, SelectorID_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:3862:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3862 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorSubdivide(PyMOLGlobals*, const char*, SelectorID_t, SelectorID_t, SelectorID_t, SelectorID_t, const char*, const char*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:4261:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4261 |       for(a = 0; a < I->Table.size(); a++)
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorGetSeleNCSet(PyMOLGlobals*, SelectorID_t)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:4565:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4565 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorGetArrayNCSet(PyMOLGlobals*, const sele_array_t&, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:4595:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4595 |   for(a = start; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:4749:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4749 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:5109:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5109 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:5153:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5153 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:5361:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5361 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorCreateObjectMolecule(PyMOLGlobals*, SelectorID_t, const char*, int, int, int, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6050:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 6050 |   if(ob)
      |   ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6054:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 6054 |     SelectorUpdateTable(G, source, -1);
      |     ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6065:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6065 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In lambda function:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6091:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6091 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6121:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6121 |   for(a = cNDummyModels; a < I->Obj.size(); a++) {  /* find bonds wholly contained in the selection */
      |                          ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6147:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6147 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6188:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6188 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6212:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6212 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)  /* any selected atoms in this state? */
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorEmbedSelection(PyMOLGlobals*, const int*, pymol::zstring_view, ObjectMolecule*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6648:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6648 |   for(a = start; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘sele_array_t SelectorSelectFromTagDict(PyMOLGlobals*, const std::unordered_map<int, int>&)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:6743:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6743 |       for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                 ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7281:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7281 |           for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7304:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7304 |                   for(a = 0; ok && a < I->Table.size(); a++) {
      |                                    ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7367:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7367 |       for(a = 0; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7381:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7381 |           for(a = 0; a < I->Table.size(); a++) {
      |                      ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7404:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7404 |                   for(a = 0; ok && a < I->Table.size(); a++) {
      |                                    ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7445:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7445 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorSelect0(PyMOLGlobals*, EvalElem*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7478:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7478 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7489:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7489 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7494:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7494 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7501:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7501 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7505:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7505 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7509:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7509 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7513:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7513 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7517:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7517 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7526:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7526 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7543 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7548:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7548 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7553:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7553 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7558:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7558 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7563:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7563 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7568:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7568 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7573:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7573 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7577:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7577 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7581:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7581 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7586:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7586 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7591:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7591 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7598:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7598 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7614:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7614 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7620:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7620 |     for(a = 0; a < I->Table.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7629:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7629 |     for(a = 0; a < I->Table.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7641:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7641 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:7661:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7661 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘pymol::Result<> SelectorSelect1(PyMOLGlobals*, EvalElem*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8366:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8366 |           for(a = cNDummyModels; a < I->Obj.size(); a++)
      |                                  ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8376:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8376 |             else if(model > I->Obj.size())
      |                     ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8458:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8458 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8462:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8462 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8510:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8510 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8521:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8521 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8532:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8532 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8543:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8543 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8558:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8558 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8569:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8569 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8580:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8580 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8591:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8591 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8606:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8606 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8617:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8617 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8628:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8628 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:8639:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8639 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:9116:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9116 |           for(a = 0; a < I->Table.size(); a++) {
      |                      ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:9145:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9145 |                   for(a = 0; a < I->Table.size(); a++) {
      |                              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:9404:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
 9404 |           for(a = 0; a < table_size; a++) {
      |                      ~~^~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:9426:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9426 |                   for(a = 0; a < I->Table.size(); a++) {
      |                              ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:9456:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9456 |         for(a = 0; a < I->Table.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:9461:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9461 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘pymol::Result<std::unique_ptr<int [], std::default_delete<int []> > > SelectorEvaluate(PyMOLGlobals*, std::vector<std::__cxx11::basic_string<char> >&, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:9610:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9610 |   while(ok && c < word.size()) {
      |               ~~^~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:10201:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10201 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:10483:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10483 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:10507:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10507 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:10712:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10712 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:10789:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10789 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14601:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14601 |         " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
      |                                     ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14596:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14596 |         " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
      |                                    ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:14627:11: warning: ‘strcpy’ offset 0 is out of the bounds [0, 0] [-Warray-bounds=]
14627 |     strcpy(rec->name, obj->Name);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
[ 93%] Building CXX object CMakeFiles/_cmd.dir/layer3/SpecRec.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/SpecRec.cpp.o -MF CMakeFiles/_cmd.dir/layer3/SpecRec.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/SpecRec.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/SpecRec.cpp
[ 93%] Building CXX object CMakeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o -MF CMakeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o.d -o CMakeFiles/_cmd.dir/layer3/SpecRecSpecial.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/SpecRecSpecial.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In member function ‘CExecutive::drag(int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15625:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15625 |                   sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
      |                                                       ^~
15626 |                           order_input, (location == -2) ? "upper" : "current");
      |                           ~~~~~~~~~~~                  
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:15625:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024
15625 |                   sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
      |                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15626 |                           order_input, (location == -2) ? "upper" : "current");
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 94%] Building CXX object CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o -MF CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o.d -o CMakeFiles/_cmd.dir/layer4/Cmd.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp
[ 94%] Building CXX object CMakeFiles/_cmd.dir/layer4/Menu.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer4/Menu.cpp.o -MF CMakeFiles/_cmd.dir/layer4/Menu.cpp.o.d -o CMakeFiles/_cmd.dir/layer4/Menu.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Menu.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:2275:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
 2275 |                   " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
      |                                        ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp:56:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 94%] Building CXX object CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o -MF CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o.d -o CMakeFiles/_cmd.dir/layer4/PopUp.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer4/PopUp.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp: In function ‘PyObject* CmdPushUndo(PyObject*, PyObject*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp:2199:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2199 |     if(ok)
      |     ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp:2201:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2201 |       if(s0[0])
      |       ^~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp: In function ‘PyObject* CmdGetMinMax(PyObject*, PyObject*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp:4452:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
 4452 |   int ok = false;
      |       ^~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp:65:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PConv.h: In instantiation of ‘PyObject* PConvToPyObject(const std::array<_Tp, _Nm>&) [with T = float; long unsigned int N = 3; PyObject = _object]’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp:365:27:   required from ‘PyObject* APIResult(PyMOLGlobals*, pymol::Result<T>&) [with T = std::array<float, 3>; PyObject = _object]’
  365 |     return PConvToPyObject(res.result());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/Cmd.cpp:4017:19:   required from here
 4017 |   return APIResult(G, result);
      |          ~~~~~~~~~^~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PConv.h:259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  259 |   for (int i = 0; i < N; ++i) {
      |                   ~~^~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp: In function ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1717:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
 1717 |                     " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
      |                                                                      ^~
In file included from /usr/include/stdio.h:980,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4152,
                 from /usr/include/c++/14/string:54,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:20:
In function ‘snprintf’,
    inlined from ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Selector.cpp:1716:19:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 59 and 324 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:3535:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
 3535 |       " Warning: Invalid characters in '%s' have been replaced or stripped\n",
      |                                         ^~
 3536 |       name ENDFB(G);
      |       ~~~~                               
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/vla.h:7,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Symmetry.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/PyMOLObject.h:26,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer2/ObjectMolecule.h:24,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/P.h:22,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer4/PopUp.cpp:31:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/PopUp.cpp: In function ‘void PopUpFree(Block*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CPopUp’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer4/PopUp.cpp:402:3: note: in expansion of macro ‘DeleteP’
  402 |   DeleteP(I);
      |   ^~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:5097:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
 5097 |             " Executive: skipping unrecognized object \"%s\" of type %d.\n",
      |                                                         ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
    inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:5727:38:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:5122:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
 5122 |           "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
      |                                                          ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
    inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp:5727:38:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
[ 95%] Building CXX object CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o -MF CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o.d -o CMakeFiles/_cmd.dir/layer5/PyMOL.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer5/PyMOL.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer5/PyMOL.cpp:35:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer5/PyMOL.cpp: In function ‘PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, const char*, int, int, int, int, int, int)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer5/PyMOL.cpp:1586:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
 1586 |         if((stop - start) >= sizeof(WordType))
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer5/PyMOL.cpp:23:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer5/PyMOL.cpp: In function ‘void PyMOL_Stop(CPyMOL*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/MemoryDebug.h:74:32: warning: deleting object of polymorphic class type ‘CMovie’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   74 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=nullptr;}}
/builddir/build/BUILD/pymol-open-source-3.1.0/layer5/PyMOL.cpp:2031:3: note: in expansion of macro ‘DeleteP’
 2031 |   DeleteP(G->Movie);
      |   ^~~~~~~
[ 95%] Building CXX object CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o -MF CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o.d -o CMakeFiles/_cmd.dir/layer5/TestPyMOL.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer5/TestPyMOL.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.h:36,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer5/TestPyMOL.cpp:35:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[ 96%] Building CXX object CMakeFiles/_cmd.dir/layer5/main.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/layer5/main.cpp.o -MF CMakeFiles/_cmd.dir/layer5/main.cpp.o.d -o CMakeFiles/_cmd.dir/layer5/main.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/layer5/main.cpp
[ 96%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVContext.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVContext.cpp
/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVContext.cpp: In function ‘void OVContext_Del(OVContext*)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVContext.cpp:21:13: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable]
   21 |     OVHeap *heap = I->heap;
      |             ^~~~
[ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVHeap.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVHeap.cpp
[ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVHeapArray.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVHeapArray.cpp
[ 97%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVLexicon.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVLexicon.cpp
[ 98%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVOneToAny.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVOneToAny.cpp
[ 98%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVOneToOne.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVOneToOne.cpp
[ 99%] Building CXX object CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/OVRandom.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/OVRandom.cpp
[ 99%] Building CXX object CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o
/usr/bin/g++ -DMMTF_MSGPACK_USE_CPP11 -DMSGPACK_NO_BOOST -DPYMOL_OPENMP -D_HAVE_LIBXML -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -D_PYMOL_VMD_PLUGINS -D_cmd_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/include -I/builddir/build/BUILD/pymol-open-source-3.1.0/ov/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer0 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer1 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer2 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer3 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer4 -I/builddir/build/BUILD/pymol-open-source-3.1.0/layer5 -I/builddir/build/BUILD/pymol-open-source-3.1.0/build/generated -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/mmtf-c -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp -MD -MT CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o -MF CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o.d -o CMakeFiles/_cmd.dir/ov/src/ov_utility.cpp.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/ov/src/ov_utility.cpp
In file included from /builddir/build/BUILD/pymol-open-source-3.1.0/layer1/Scene.h:29,
                 from /builddir/build/BUILD/pymol-open-source-3.1.0/layer5/main.cpp:53:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h: In constructor ‘CShaderPrg::CShaderPrg(PyMOLGlobals*, const std::string&, const std::string&, const std::string&, pymol::copyable_ptr<GeometryShaderParams>, pymol::copyable_ptr<TessellationShaderParams>)’:
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:65:49: warning: ‘CShaderPrg::tessParams’ will be initialized after [-Wreorder]
   65 |   pymol::copyable_ptr<TessellationShaderParams> tessParams;
      |                                                 ^~~~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:63:27: warning:   ‘const std::string CShaderPrg::vertfile’ [-Wreorder]
   63 |   const std::string name, vertfile, fragfile;
      |                           ^~~~~~~~
/builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ShaderMgr.h:73:3: warning:   when initialized here [-Wreorder]
   73 |   CShaderPrg(PyMOLGlobals* G_, const std::string& name,
      |   ^~~~~~~~~~
[100%] Linking CXX shared library /builddir/build/BUILD/pymol-open-source-3.1.0/build/lib.linux-x86_64-cpython-312/pymol/_cmd.cpython-312-x86_64-linux-gnu.so
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/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
 1334 |   line[0] = '\0';
      |           ^
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
 1333 |   line = (char *) malloc (sizeof(char) * len);
      |                          ^
/builddir/build/BUILD/pymol-open-source-3.1.0/layer3/Executive.cpp: In function ‘ExecutiveManageObject’:
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14627 |     strcpy(rec->name, obj->Name);
      |           ^
lto1: note: destination object is likely at address zero
In member function ‘set_’,
    inlined from ‘__ct ’ at /builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array1d.h:119:6,
    inlined from ‘findBest’ at /builddir/build/BUILD/pymol-open-source-3.1.0/layer0/ccealignmodule.cpp:506:28:
/builddir/build/BUILD/pymol-open-source-3.1.0/include/tnt/tnt_array1d.h:283:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
  283 |                 *p = a;
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/usr/bin/gcc -D_champ_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/err2.c.o -MF CMakeFiles/_champ.dir/contrib/champ/err2.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/err2.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/err2.c
[ 45%] Building C object CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o
/usr/bin/gcc -D_champ_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o -MF CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/feedback2.c
[ 54%] Building C object CMakeFiles/_champ.dir/contrib/champ/list.c.o
/usr/bin/gcc -D_champ_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/list.c.o -MF CMakeFiles/_champ.dir/contrib/champ/list.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/list.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/list.c
[ 63%] Building C object CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o
/usr/bin/gcc -D_champ_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o -MF CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/os_memory.c
[ 72%] Building C object CMakeFiles/_champ.dir/contrib/champ/sort.c.o
/usr/bin/gcc -D_champ_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/sort.c.o -MF CMakeFiles/_champ.dir/contrib/champ/sort.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/sort.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/sort.c
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   55 |   while(count&&(((int)p)&mask)) {
      |                  ^
[ 81%] Building C object CMakeFiles/_champ.dir/contrib/champ/strblock.c.o
/usr/bin/gcc -D_champ_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/strblock.c.o -MF CMakeFiles/_champ.dir/contrib/champ/strblock.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/strblock.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/strblock.c
[ 90%] Building C object CMakeFiles/_champ.dir/contrib/champ/vla.c.o
/usr/bin/gcc -D_champ_EXPORTS -I/builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/_champ.dir/contrib/champ/vla.c.o -MF CMakeFiles/_champ.dir/contrib/champ/vla.c.o.d -o CMakeFiles/_champ.dir/contrib/champ/vla.c.o -c /builddir/build/BUILD/pymol-open-source-3.1.0/contrib/champ/vla.c
[100%] Linking C shared library /builddir/build/BUILD/pymol-open-source-3.1.0/build/lib.linux-x86_64-cpython-312/chempy/champ/_champ.cpython-312-x86_64-linux-gnu.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/_champ.dir/link.txt --verbose=1
/usr/bin/gcc -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/_champ.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,_champ.cpython-312-x86_64-linux-gnu.so -o /builddir/build/BUILD/pymol-open-source-3.1.0/build/lib.linux-x86_64-cpython-312/chempy/champ/_champ.cpython-312-x86_64-linux-gnu.so CMakeFiles/_champ.dir/contrib/champ/champ.c.o CMakeFiles/_champ.dir/contrib/champ/champ_module.c.o CMakeFiles/_champ.dir/contrib/champ/chiral.c.o CMakeFiles/_champ.dir/contrib/champ/err2.c.o CMakeFiles/_champ.dir/contrib/champ/feedback2.c.o CMakeFiles/_champ.dir/contrib/champ/list.c.o CMakeFiles/_champ.dir/contrib/champ/os_memory.c.o CMakeFiles/_champ.dir/contrib/champ/sort.c.o CMakeFiles/_champ.dir/contrib/champ/strblock.c.o CMakeFiles/_champ.dir/contrib/champ/vla.c.o
gmake[2]: Leaving directory '/builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_champ'
[100%] Built target _champ
gmake[1]: Leaving directory '/builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_champ'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/pymol-open-source-3.1.0/build/temp.linux-x86_64-cpython-312/_champ/CMakeFiles 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bjOgr6
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64
++ dirname /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-3.1.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64-v3 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2   '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64 --prefix /usr --use-msgpackc=c++11 --use-openmp=yes --pymol-path=/usr/lib64/python3.12/site-packages/pymol
running install
/usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        Follow the current Python packaging guidelines when building
        Python RPM packages.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
        and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
        ********************************************************************************

!!
  self.initialize_options()
running install_lib
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/web
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/web/examples
copying build/lib.linux-x86_64-cpython-312/web/examples/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/web/examples
copying build/lib.linux-x86_64-cpython-312/web/examples/justhttpd.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/web/examples
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol_web
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol_web/examples
copying build/lib.linux-x86_64-cpython-312/pymol_web/examples/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol_web/examples
copying build/lib.linux-x86_64-cpython-312/pymol_web/examples/justhttpd.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol_web/examples
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-312/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-312/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-312/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-312/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-312/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-312/chempy/champ/_champ.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-312/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-312/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-312/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-312/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/fast
copying build/lib.linux-x86_64-cpython-312/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/fast
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/fragments
copying build/lib.linux-x86_64-cpython-312/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/fragments
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-cpython-312/chempy/mmtf/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-cpython-312/chempy/mmtf/io.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mmtf
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-312/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-312/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-312/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-312/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-312/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-312/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/io.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/map.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/models.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/place.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
copying build/lib.linux-x86_64-cpython-312/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/askpartial.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/change_confirm.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/colors.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/create_shortcut.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/fetch.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/help_shortcut.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/load_aln.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/load_mae.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/load_map.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/load_mtz.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/load_traj.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/movieexport.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/pluginitem.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/pluginmanager.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/png.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/props.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/render.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/save_molecule.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/save_object.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/shortcut_menu.ui -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-312/pmg_qt/forms/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-312/pmg_qt/syntax/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-312/pmg_qt/syntax/pml.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-312/pmg_qt/syntax/pmlparser.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-312/pmg_qt/syntax/python.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-312/pmg_qt/TextEditor.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/advanced_settings_gui.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/builder.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/file_dialogs.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/keymapping.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/mimic_pmg_tk.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/mimic_tk.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/properties_dialog.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/pymol_gl_widget.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/pymol_qt_gui.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/scene_bin_gui.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/shortcut_menu_gui.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-312/pmg_qt/volume.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/demo
copying build/lib.linux-x86_64-cpython-312/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/demo
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-312/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-312/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-312/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-312/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-cpython-312/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-cpython-312/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-312/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-312/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-312/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-312/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-312/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-312/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-312/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-312/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/_cmd.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/Qt
copying build/lib.linux-x86_64-cpython-312/pymol/Qt/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/Qt
copying build/lib.linux-x86_64-cpython-312/pymol/Qt/utils.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/Qt
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-312/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-312/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-312/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-312/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-312/pymol/plugins/managergui_qt.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-312/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/plugins
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/stereochemistry
copying build/lib.linux-x86_64-cpython-312/pymol/stereochemistry/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/stereochemistry
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/command.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/nucmutagenesis.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/openvr.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-312/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/__main__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/_gui.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/api.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/cgobuilder.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/colorprinting.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/diagnosing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/lazyio.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/morphing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/mpeg_encode.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/save_shortcut.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/seqalign.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/shortcut_dict.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/shortcut_manager.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/util.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
copying build/lib.linux-x86_64-cpython-312/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol2
copying build/lib.linux-x86_64-cpython-312/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol2
copying build/lib.linux-x86_64-cpython-312/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol2
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/web/examples/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/web/examples/justhttpd.py to justhttpd.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol_web/examples/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol_web/examples/justhttpd.py to justhttpd.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin/commands.py to commands.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin/realtime.py to realtime.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin/state.py to state.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bmin/util.py to util.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ/amber99.py to amber99.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ/assign.py to assign.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/fast/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/fragments/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mmtf/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mmtf/io.py to io.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker/amber.py to amber.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker/keyword.py to keyword.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker/realtime.py to realtime.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/tinker/state.py to state.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/arc.py to arc.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bond_amber.py to bond_amber.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/bonds.py to bonds.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/brick.py to brick.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/cc1.py to cc1.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/charge.py to charge.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/cif.py to cif.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/cpv.py to cpv.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/dictdb.py to dictdb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/gamess1.py to gamess1.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/gms.py to gms.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/hetatm.py to hetatm.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/io.py to io.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/lst.py to lst.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mae.py to mae.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/map.py to map.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mass.py to mass.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mmd.py to mmd.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/models.py to models.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mol.py to mol.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/mol2.py to mol2.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/neighbor.py to neighbor.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/pdb.py to pdb.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/pkl.py to pkl.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/place.py to place.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/protein.py to protein.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/protein_amber.py to protein_amber.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/protein_residues.py to protein_residues.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/sdf.py to sdf.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/solvate.py to solvate.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/water_amber.py to water_amber.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/water_residues.py to water_residues.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/chempy/xyz.py to xyz.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/forms/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax/pml.py to pml.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/syntax/python.py to python.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/TextEditor.py to TextEditor.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/builder.py to builder.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/keymapping.py to keymapping.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/scene_bin_gui.py to scene_bin_gui.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_qt/volume.py to volume.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-312.pyc
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byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/viewing.py to viewing.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/wizarding.py to wizarding.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/xray.py to xray.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol/xwin.py to xwin.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol2/__init__.py to __init__.cpython-312.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol2/cmd2.py to cmd2.cpython-312.pyc
writing byte-compilation script '/tmp/tmpuszb4abe.py'
/usr/bin/python3 /tmp/tmpuszb4abe.py
removing /tmp/tmpuszb4abe.py
running install_egg_info
running egg_info
writing modules/pymol.egg-info/PKG-INFO
/usr/lib/python3.12/site-packages/setuptools/_core_metadata.py:157: SetuptoolsDeprecationWarning: Invalid config.
!!

        ********************************************************************************
        newlines are not allowed in `summary` and will break in the future
        ********************************************************************************

!!
  write_field('Summary', single_line(summary))
writing dependency_links to modules/pymol.egg-info/dependency_links.txt
writing entry points to modules/pymol.egg-info/entry_points.txt
writing requirements to modules/pymol.egg-info/requires.txt
writing top-level names to modules/pymol.egg-info/top_level.txt
reading manifest file 'modules/pymol.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'modules/pymol.egg-info/SOURCES.txt'
Copying modules/pymol.egg-info to /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/lib64/python3.12/site-packages/pymol-3.1.0-py3.12.egg-info
running install_scripts
Installing pymol script to /builddir/build/BUILDROOT/pymol-3.1.0-17.el10.TMM.x86_64/usr/bin
creating /usr/lib64/python3.12/site-packages/pymol
error: could not create '/usr/lib64/python3.12/site-packages/pymol': Permission denied
error: Bad exit status from /var/tmp/rpm-tmp.bjOgr6 (%install)
    Bad exit status from /var/tmp/rpm-tmp.bjOgr6 (%install)

RPM build errors:
Finish: rpmbuild pymol-3.1.0-17.el10.TMM.src.rpm
Finish: build phase for pymol-3.1.0-17.el10.TMM.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root/var/log/dnf.rpm.log
/var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root/var/log/dnf.librepo.log
/var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root/var/log/dnf.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
ERROR: Exception(/var/lib/copr-rpmbuild/results/pymol-3.1.0-17.el10.TMM.src.rpm) Config(centos-stream+epel-10-x86_64) 4 minutes 6 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_failure=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
ERROR: Command failed: 
 # /usr/bin/systemd-nspawn -q -M 25cfd58283d243e687185bf9ff5f89d6 -D /var/lib/mock/centos-stream+epel-10-x86_64-1788221599.074749/root -a -u mockbuild --capability=cap_ipc_lock --capability=cap_ipc_lock --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --resolv-conf=off --resolv-conf=off --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007"' '--setenv=PS1=<mock-chroot> \s-\v\$ ' --setenv=LANG=C.UTF-8 bash --login -c '/usr/bin/rpmbuild -ba --noprep --target x86_64 /builddir/build/originals/pymol.spec'

Copr build error: Build failed