Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1ca' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5928047 --chroot epel-9-x86_64 --detached Version: 0.64 PID: 5410 Logging PID: 5411 Task: {'appstream': False, 'background': False, 'build_id': 5928047, 'buildroot_pkgs': [], 'chroot': 'epel-9-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '35e0b3dbfca788d58179ce675be389d23a1b9bb1', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tomasm/EPEL9-plus/apbs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'apbs', 'package_version': '3.0.0-8.fc35', 'project_dirname': 'EPEL9-plus', 'project_name': 'EPEL9-plus', 'project_owner': 'tomasm', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tomasm/EPEL9-plus/epel-9-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'tomasm/EPEL9-plus--tomasm', 'source_json': {}, 'source_type': None, 'submitter': 'tomasm', 'tags': [], 'task_id': '5928047-epel-9-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tomasm/EPEL9-plus/apbs /var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tomasm/EPEL9-plus/apbs', '/var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs'... Running: git checkout 35e0b3dbfca788d58179ce675be389d23a1b9bb1 cmd: ['git', 'checkout', '35e0b3dbfca788d58179ce675be389d23a1b9bb1'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs rc: 0 stdout: stderr: Note: switching to '35e0b3dbfca788d58179ce675be389d23a1b9bb1'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 35e0b3d automatic import of apbs Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading apbs-pdb2pqr-vAPBS-3.0.0.tar.gz INFO: Calling: curl -H Pragma: -o apbs-pdb2pqr-vAPBS-3.0.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tomasm/EPEL9-plus/apbs/apbs-pdb2pqr-vAPBS-3.0.0.tar.gz/md5/264433d7b064189b342b3796915c7dde/apbs-pdb2pqr-vAPBS-3.0.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 101M 100 101M 0 0 48.8M 0 0:00:02 0:00:02 --:--:-- 48.8M INFO: Reading stdout from command: md5sum apbs-pdb2pqr-vAPBS-3.0.0.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs/apbs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1684327744.476779 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs/apbs.spec) Config(rhel+epel-9-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1684327744.476779/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity Copr repository 1.0 MB/s | 185 kB 00:00 Red Hat Enterprise Linux - BaseOS 7.2 MB/s | 12 MB 00:01 Red Hat Enterprise Linux - AppStream 17 MB/s | 21 MB 00:01 Red Hat Enterprise Linux - CodeReady Linux Buil 5.8 MB/s | 5.6 MB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 2.3 MB/s | 15 MB 00:06 Dependencies resolved. ========================================================================================= Package Arch Version Repo Size ========================================================================================= Installing: dnf noarch 4.14.0-5.el9_2 baseos 486 k dnf-plugins-core noarch 4.3.0-5.el9_2 baseos 42 k subscription-manager x86_64 1.29.33.1-1.el9_2 baseos 917 k Installing dependencies: acl x86_64 2.3.1-3.el9 baseos 77 k alternatives x86_64 1.20-2.el9 baseos 40 k audit-libs x86_64 3.0.7-103.el9 baseos 121 k basesystem noarch 11-13.el9 baseos 8.0 k bash x86_64 5.1.8-6.el9_1 baseos 1.7 M bzip2-libs x86_64 1.0.8-8.el9 baseos 42 k ca-certificates noarch 2022.2.54-90.2.el9_0 baseos 835 k coreutils x86_64 8.32-34.el9 baseos 1.2 M coreutils-common x86_64 8.32-34.el9 baseos 2.0 M cracklib x86_64 2.9.6-27.el9 baseos 99 k cracklib-dicts x86_64 2.9.6-27.el9 baseos 3.6 M crypto-policies noarch 20221215-1.git9a18988.el9 baseos 85 k curl x86_64 7.76.1-23.el9_2.1 baseos 300 k cyrus-sasl-lib x86_64 2.1.27-21.el9 baseos 774 k dbus x86_64 1:1.12.20-7.el9_1 baseos 8.0 k dbus-broker x86_64 28-7.el9 baseos 175 k dbus-common noarch 1:1.12.20-7.el9_1 baseos 18 k dbus-libs x86_64 1:1.12.20-7.el9_1 baseos 155 k dmidecode x86_64 1:3.3-7.el9 baseos 93 k dnf-data noarch 4.14.0-5.el9_2 baseos 44 k elfutils-default-yama-scope noarch 0.188-3.el9 baseos 14 k elfutils-libelf x86_64 0.188-3.el9 baseos 198 k elfutils-libs x86_64 0.188-3.el9 baseos 256 k expat x86_64 2.5.0-1.el9 baseos 120 k file-libs x86_64 5.39-12.el9 baseos 592 k filesystem x86_64 3.16-2.el9 baseos 4.7 M gawk x86_64 5.1.0-6.el9 baseos 1.0 M gdbm-libs x86_64 1:1.19-4.el9 baseos 56 k glib2 x86_64 2.68.4-6.el9 baseos 2.6 M glibc x86_64 2.34-60.el9 baseos 1.9 M glibc-common x86_64 2.34-60.el9 baseos 320 k glibc-minimal-langpack x86_64 2.34-60.el9 baseos 36 k gmp x86_64 1:6.2.0-10.el9 baseos 320 k gnupg2 x86_64 2.3.3-2.el9_0 baseos 2.5 M gnutls x86_64 3.7.6-20.el9_2 baseos 1.0 M gobject-introspection x86_64 1.68.0-11.el9 baseos 254 k gpgme x86_64 1.15.1-6.el9 baseos 211 k grep x86_64 3.6-5.el9 baseos 273 k gzip x86_64 1.12-1.el9 baseos 167 k ima-evm-utils x86_64 1.4-4.el9 baseos 67 k json-c x86_64 0.14-11.el9 baseos 45 k json-glib x86_64 1.6.6-1.el9 baseos 167 k keyutils-libs x86_64 1.6.3-1.el9 baseos 34 k kmod-libs x86_64 28-7.el9 baseos 66 k krb5-libs x86_64 1.20.1-8.el9 baseos 731 k libacl x86_64 2.3.1-3.el9 baseos 26 k libarchive x86_64 3.5.3-4.el9 baseos 392 k libassuan x86_64 2.5.5-3.el9 baseos 71 k libattr x86_64 2.5.1-3.el9 baseos 20 k libblkid x86_64 2.37.4-11.el9_2 baseos 109 k libbrotli x86_64 1.0.9-6.el9 baseos 317 k libcap x86_64 2.48-8.el9 baseos 76 k libcap-ng x86_64 0.8.2-7.el9 baseos 36 k libcom_err x86_64 1.46.5-3.el9 baseos 29 k libcomps x86_64 0.1.18-1.el9 baseos 80 k libcurl x86_64 7.76.1-23.el9_2.1 baseos 288 k libdb x86_64 5.3.28-53.el9 baseos 740 k libdnf x86_64 0.69.0-3.el9_2 baseos 664 k libdnf-plugin-subscription-manager x86_64 1.29.33.1-1.el9_2 baseos 86 k libeconf x86_64 0.4.1-2.el9 baseos 31 k libevent x86_64 2.1.12-6.el9 baseos 268 k libfdisk x86_64 2.37.4-11.el9_2 baseos 156 k libffi x86_64 3.4.2-7.el9 baseos 40 k libgcc x86_64 11.3.1-4.3.el9 baseos 114 k libgcrypt x86_64 1.10.0-10.el9_2 baseos 508 k libgomp x86_64 11.3.1-4.3.el9 baseos 288 k libgpg-error x86_64 1.42-5.el9 baseos 220 k libidn2 x86_64 2.3.0-7.el9 baseos 105 k libksba x86_64 1.5.1-6.el9_1 baseos 158 k libmodulemd x86_64 2.13.0-2.el9 baseos 236 k libmount x86_64 2.37.4-11.el9_2 baseos 136 k libnghttp2 x86_64 1.43.0-5.el9 baseos 76 k libnl3 x86_64 3.7.0-1.el9 baseos 354 k libpsl x86_64 0.21.1-5.el9 baseos 66 k libpwquality x86_64 1.4.4-8.el9 baseos 123 k librepo x86_64 1.14.5-1.el9 baseos 91 k libreport-filesystem noarch 2.15.2-6.el9 baseos 15 k librhsm x86_64 0.0.3-7.el9 baseos 37 k libseccomp x86_64 2.5.2-2.el9 baseos 74 k libselinux x86_64 3.5-1.el9 baseos 88 k libsemanage x86_64 3.5-1.el9 baseos 121 k libsepol x86_64 3.5-1.el9 baseos 317 k libsigsegv x86_64 2.13-4.el9 baseos 30 k libsmartcols x86_64 2.37.4-11.el9_2 baseos 65 k libsolv x86_64 0.7.22-4.el9 baseos 395 k libssh x86_64 0.10.4-8.el9 baseos 216 k libssh-config noarch 0.10.4-8.el9 baseos 11 k libstdc++ x86_64 11.3.1-4.3.el9 baseos 759 k libtasn1 x86_64 4.16.0-8.el9_1 baseos 77 k libunistring x86_64 0.9.10-15.el9 baseos 499 k libuser x86_64 0.63-12.el9 baseos 409 k libutempter x86_64 1.2.1-6.el9 baseos 30 k libuuid x86_64 2.37.4-11.el9_2 baseos 30 k libverto x86_64 0.3.2-3.el9 baseos 24 k libxcrypt x86_64 4.4.18-3.el9 baseos 120 k libxml2 x86_64 2.9.13-3.el9_1 baseos 752 k libyaml x86_64 0.2.5-7.el9 baseos 63 k libzstd x86_64 1.5.1-2.el9 baseos 332 k lua-libs x86_64 5.4.4-3.el9 baseos 218 k lz4-libs x86_64 1.9.3-5.el9 baseos 69 k mpfr x86_64 4.1.0-7.el9 baseos 329 k ncurses-base noarch 6.2-8.20210508.el9 baseos 100 k ncurses-libs x86_64 6.2-8.20210508.el9 baseos 334 k nettle x86_64 3.8-3.el9_0 baseos 552 k npth x86_64 1.6-8.el9 baseos 27 k openldap x86_64 2.6.2-3.el9 baseos 287 k openldap-compat x86_64 2.6.2-3.el9 baseos 21 k openssl x86_64 1:3.0.7-6.el9_2 baseos 1.2 M openssl-libs x86_64 1:3.0.7-6.el9_2 baseos 2.2 M p11-kit x86_64 0.24.1-2.el9 baseos 387 k p11-kit-trust x86_64 0.24.1-2.el9 baseos 148 k pam x86_64 1.5.1-14.el9 baseos 625 k passwd x86_64 0.80-12.el9 baseos 126 k pcre x86_64 8.44-3.el9.3 baseos 202 k pcre2 x86_64 10.40-2.el9 baseos 239 k pcre2-syntax noarch 10.40-2.el9 baseos 147 k popt x86_64 1.18-8.el9 baseos 69 k publicsuffix-list-dafsa noarch 20210518-3.el9 baseos 59 k python3 x86_64 3.9.16-1.el9 baseos 31 k python3-chardet noarch 4.0.0-5.el9 baseos 243 k python3-cloud-what x86_64 1.29.33.1-1.el9_2 baseos 103 k python3-dateutil noarch 1:2.8.1-6.el9 baseos 306 k python3-dbus x86_64 1.2.18-2.el9 baseos 148 k python3-decorator noarch 4.4.2-6.el9 baseos 31 k python3-dnf noarch 4.14.0-5.el9_2 baseos 467 k python3-dnf-plugins-core noarch 4.3.0-5.el9_2 baseos 267 k python3-ethtool x86_64 0.15-2.el9 baseos 45 k python3-gobject-base x86_64 3.40.1-6.el9 baseos 187 k python3-gobject-base-noarch noarch 3.40.1-6.el9 baseos 165 k python3-gpg x86_64 1.15.1-6.el9 baseos 285 k python3-hawkey x86_64 0.69.0-3.el9_2 baseos 107 k python3-idna noarch 2.10-7.el9 baseos 101 k python3-iniparse noarch 0.4-45.el9 baseos 51 k python3-inotify noarch 0.9.6-25.el9 baseos 56 k python3-libcomps x86_64 0.1.18-1.el9 baseos 52 k python3-libdnf x86_64 0.69.0-3.el9_2 baseos 784 k python3-librepo x86_64 1.14.5-1.el9 baseos 52 k python3-libs x86_64 3.9.16-1.el9 baseos 7.8 M python3-pip-wheel noarch 21.2.3-6.el9 baseos 1.1 M python3-pysocks noarch 1.7.1-12.el9 baseos 38 k python3-requests noarch 2.25.1-6.el9 baseos 130 k python3-rpm x86_64 4.16.1.3-22.el9 baseos 70 k python3-setuptools noarch 53.0.0-12.el9 baseos 948 k python3-setuptools-wheel noarch 53.0.0-12.el9 baseos 470 k python3-six noarch 1.15.0-9.el9 baseos 40 k python3-subscription-manager-rhsm x86_64 1.29.33.1-1.el9_2 baseos 187 k python3-systemd x86_64 234-18.el9 baseos 94 k python3-urllib3 noarch 1.26.5-3.el9 baseos 220 k readline x86_64 8.1-4.el9 baseos 215 k redhat-release x86_64 9.2-0.13.el9 baseos 46 k rpm x86_64 4.16.1.3-22.el9 baseos 542 k rpm-build-libs x86_64 4.16.1.3-22.el9 baseos 91 k rpm-libs x86_64 4.16.1.3-22.el9 baseos 309 k rpm-sign-libs x86_64 4.16.1.3-22.el9 baseos 23 k sed x86_64 4.8-9.el9 baseos 309 k setup noarch 2.13.7-9.el9 baseos 150 k shadow-utils x86_64 2:4.9-6.el9 baseos 1.2 M sqlite-libs x86_64 3.34.1-6.el9_1 baseos 622 k subscription-manager-rhsm-certificates noarch 20220623-1.el9 baseos 22 k systemd x86_64 252-13.el9_2 baseos 4.1 M systemd-libs x86_64 252-13.el9_2 baseos 652 k systemd-pam x86_64 252-13.el9_2 baseos 258 k systemd-rpm-macros noarch 252-13.el9_2 baseos 46 k tpm2-tss x86_64 3.0.3-8.el9 baseos 580 k tzdata noarch 2023c-1.el9 baseos 845 k usermode x86_64 1.114-4.el9 baseos 194 k util-linux x86_64 2.37.4-11.el9_2 baseos 2.3 M util-linux-core x86_64 2.37.4-11.el9_2 baseos 464 k virt-what x86_64 1.25-3.el9 baseos 36 k which x86_64 2.21-28.el9 baseos 45 k xz-libs x86_64 5.2.5-8.el9_0 baseos 94 k zlib x86_64 1.2.11-39.el9 baseos 94 k Transaction Summary ========================================================================================= Install 175 Packages Total download size: 75 M Installed size: 235 M Downloading Packages: (1/175): libpwquality-1.4.4-8.el9.x86_64.rpm 547 kB/s | 123 kB 00:00 (2/175): json-glib-1.6.6-1.el9.x86_64.rpm 596 kB/s | 167 kB 00:00 (3/175): libmodulemd-2.13.0-2.el9.x86_64.rpm 1.8 MB/s | 236 kB 00:00 (4/175): libseccomp-2.5.2-2.el9.x86_64.rpm 199 kB/s | 74 kB 00:00 (5/175): libutempter-1.2.1-6.el9.x86_64.rpm 187 kB/s | 30 kB 00:00 (6/175): python3-ethtool-0.15-2.el9.x86_64.rpm 448 kB/s | 45 kB 00:00 (7/175): python3-iniparse-0.4-45.el9.noarch.rpm 348 kB/s | 51 kB 00:00 (8/175): libassuan-2.5.5-3.el9.x86_64.rpm 680 kB/s | 71 kB 00:00 (9/175): lz4-libs-1.9.3-5.el9.x86_64.rpm 482 kB/s | 69 kB 00:00 (10/175): libcap-2.48-8.el9.x86_64.rpm 600 kB/s | 76 kB 00:00 (11/175): python3-decorator-4.4.2-6.el9.noarch. 151 kB/s | 31 kB 00:00 (12/175): python3-urllib3-1.26.5-3.el9.noarch.r 2.0 MB/s | 220 kB 00:00 (13/175): npth-1.6-8.el9.x86_64.rpm 118 kB/s | 27 kB 00:00 (14/175): libcap-ng-0.8.2-7.el9.x86_64.rpm 343 kB/s | 36 kB 00:00 (15/175): libacl-2.3.1-3.el9.x86_64.rpm 123 kB/s | 26 kB 00:00 (16/175): python3-gpg-1.15.1-6.el9.x86_64.rpm 1.8 MB/s | 285 kB 00:00 (17/175): json-c-0.14-11.el9.x86_64.rpm 367 kB/s | 45 kB 00:00 (18/175): python3-inotify-0.9.6-25.el9.noarch.r 337 kB/s | 56 kB 00:00 (19/175): libnghttp2-1.43.0-5.el9.x86_64.rpm 477 kB/s | 76 kB 00:00 (20/175): filesystem-3.16-2.el9.x86_64.rpm 21 MB/s | 4.7 MB 00:00 (21/175): kmod-libs-28-7.el9.x86_64.rpm 287 kB/s | 66 kB 00:00 (22/175): python3-dbus-1.2.18-2.el9.x86_64.rpm 622 kB/s | 148 kB 00:00 (23/175): pcre-8.44-3.el9.3.x86_64.rpm 1.9 MB/s | 202 kB 00:00 (24/175): python3-idna-2.10-7.el9.noarch.rpm 900 kB/s | 101 kB 00:00 (25/175): libreport-filesystem-2.15.2-6.el9.noa 162 kB/s | 15 kB 00:00 (26/175): sed-4.8-9.el9.x86_64.rpm 2.8 MB/s | 309 kB 00:00 (27/175): libcomps-0.1.18-1.el9.x86_64.rpm 739 kB/s | 80 kB 00:00 (28/175): ncurses-libs-6.2-8.20210508.el9.x86_6 2.2 MB/s | 334 kB 00:00 (29/175): python3-libcomps-0.1.18-1.el9.x86_64. 514 kB/s | 52 kB 00:00 (30/175): basesystem-11-13.el9.noarch.rpm 78 kB/s | 8.0 kB 00:00 (31/175): usermode-1.114-4.el9.x86_64.rpm 1.6 MB/s | 194 kB 00:00 (32/175): libunistring-0.9.10-15.el9.x86_64.rpm 1.4 MB/s | 499 kB 00:00 (33/175): libbrotli-1.0.9-6.el9.x86_64.rpm 2.9 MB/s | 317 kB 00:00 (34/175): grep-3.6-5.el9.x86_64.rpm 664 kB/s | 273 kB 00:00 (35/175): ncurses-base-6.2-8.20210508.el9.noarc 956 kB/s | 100 kB 00:00 (36/175): libverto-0.3.2-3.el9.x86_64.rpm 116 kB/s | 24 kB 00:00 (37/175): libxcrypt-4.4.18-3.el9.x86_64.rpm 627 kB/s | 120 kB 00:00 (38/175): libyaml-0.2.5-7.el9.x86_64.rpm 634 kB/s | 63 kB 00:00 (39/175): acl-2.3.1-3.el9.x86_64.rpm 801 kB/s | 77 kB 00:00 (40/175): mpfr-4.1.0-7.el9.x86_64.rpm 2.6 MB/s | 329 kB 00:00 (41/175): popt-1.18-8.el9.x86_64.rpm 563 kB/s | 69 kB 00:00 (42/175): libidn2-2.3.0-7.el9.x86_64.rpm 1.0 MB/s | 105 kB 00:00 (43/175): readline-8.1-4.el9.x86_64.rpm 1.4 MB/s | 215 kB 00:00 (44/175): cracklib-2.9.6-27.el9.x86_64.rpm 756 kB/s | 99 kB 00:00 (45/175): gpgme-1.15.1-6.el9.x86_64.rpm 1.6 MB/s | 211 kB 00:00 (46/175): passwd-0.80-12.el9.x86_64.rpm 645 kB/s | 126 kB 00:00 (47/175): libevent-2.1.12-6.el9.x86_64.rpm 1.4 MB/s | 268 kB 00:00 (48/175): python3-requests-2.25.1-6.el9.noarch. 1.3 MB/s | 130 kB 00:00 (49/175): libzstd-1.5.1-2.el9.x86_64.rpm 2.9 MB/s | 332 kB 00:00 (50/175): libffi-3.4.2-7.el9.x86_64.rpm 202 kB/s | 40 kB 00:00 (51/175): 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(release key 2) " Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51 From : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release Key imported successfully Importing GPG key 0x5A6340B3: Userid : "Red Hat, Inc. (auxiliary key 3) " Fingerprint: 7E46 2425 8C40 6535 D56D 6F13 5054 E4A4 5A63 40B3 From : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-2.el9.x86_64 1/1 Preparing : 1/1 Installing : libgcc-11.3.1-4.3.el9.x86_64 1/175 Running scriptlet: libgcc-11.3.1-4.3.el9.x86_64 1/175 Installing : crypto-policies-20221215-1.git9a18988.el9.noarch 2/175 Running scriptlet: crypto-policies-20221215-1.git9a18988.el9.noarch 2/175 Installing : tzdata-2023c-1.el9.noarch 3/175 Installing : subscription-manager-rhsm-certificates-20220623- 4/175 Installing : coreutils-common-8.32-34.el9.x86_64 5/175 Installing : libssh-config-0.10.4-8.el9.noarch 6/175 Installing : redhat-release-9.2-0.13.el9.x86_64 7/175 Installing : setup-2.13.7-9.el9.noarch 8/175 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-9.el9.noarch 8/175 Installing : filesystem-3.16-2.el9.x86_64 9/175 Installing : basesystem-11-13.el9.noarch 10/175 Installing : python3-setuptools-wheel-53.0.0-12.el9.noarch 11/175 Installing : pcre2-syntax-10.40-2.el9.noarch 12/175 Installing : 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libgpg-error-1.42-5.el9.x86_64 29/175 Installing : libffi-3.4.2-7.el9.x86_64 30/175 Installing : p11-kit-0.24.1-2.el9.x86_64 31/175 Installing : libxml2-2.9.13-3.el9_1.x86_64 32/175 Installing : readline-8.1-4.el9.x86_64 33/175 Installing : libsmartcols-2.37.4-11.el9_2.x86_64 34/175 Installing : libgcrypt-1.10.0-10.el9_2.x86_64 35/175 Installing : lz4-libs-1.9.3-5.el9.x86_64 36/175 Installing : libcap-ng-0.8.2-7.el9.x86_64 37/175 Installing : audit-libs-3.0.7-103.el9.x86_64 38/175 Installing : json-c-0.14-11.el9.x86_64 39/175 Installing : libunistring-0.9.10-15.el9.x86_64 40/175 Installing : libidn2-2.3.0-7.el9.x86_64 41/175 Installing : dmidecode-1:3.3-7.el9.x86_64 42/175 Installing : gmp-1:6.2.0-10.el9.x86_64 43/175 Installing : libattr-2.5.1-3.el9.x86_64 44/175 Installing : libacl-2.3.1-3.el9.x86_64 45/175 Installing : libcom_err-1.46.5-3.el9.x86_64 46/175 Installing : expat-2.5.0-1.el9.x86_64 47/175 Installing : libstdc++-11.3.1-4.3.el9.x86_64 48/175 Installing : lua-libs-5.4.4-3.el9.x86_64 49/175 Installing : libassuan-2.5.5-3.el9.x86_64 50/175 Installing : file-libs-5.39-12.el9.x86_64 51/175 Installing : elfutils-libelf-0.188-3.el9.x86_64 52/175 Installing : pcre-8.44-3.el9.3.x86_64 53/175 Installing : libsigsegv-2.13-4.el9.x86_64 54/175 Installing : grep-3.6-5.el9.x86_64 55/175 Installing : gdbm-libs-1:1.19-4.el9.x86_64 56/175 Installing : pcre2-10.40-2.el9.x86_64 57/175 Installing : libtasn1-4.16.0-8.el9_1.x86_64 58/175 Installing : keyutils-libs-1.6.3-1.el9.x86_64 59/175 Installing : libsepol-3.5-1.el9.x86_64 60/175 Installing : libselinux-3.5-1.el9.x86_64 61/175 Installing : sed-4.8-9.el9.x86_64 62/175 Installing : libsemanage-3.5-1.el9.x86_64 63/175 Installing : shadow-utils-2:4.9-6.el9.x86_64 64/175 Running scriptlet: libutempter-1.2.1-6.el9.x86_64 65/175 Installing : libutempter-1.2.1-6.el9.x86_64 65/175 Installing : libcomps-0.1.18-1.el9.x86_64 66/175 Installing : acl-2.3.1-3.el9.x86_64 67/175 Installing : mpfr-4.1.0-7.el9.x86_64 68/175 Installing : gawk-5.1.0-6.el9.x86_64 69/175 Installing : libpsl-0.21.1-5.el9.x86_64 70/175 Installing : libksba-1.5.1-6.el9_1.x86_64 71/175 Installing : systemd-rpm-macros-252-13.el9_2.noarch 72/175 Installing : libseccomp-2.5.2-2.el9.x86_64 73/175 Installing : npth-1.6-8.el9.x86_64 74/175 Installing : libnghttp2-1.43.0-5.el9.x86_64 75/175 Installing : libbrotli-1.0.9-6.el9.x86_64 76/175 Installing : libverto-0.3.2-3.el9.x86_64 77/175 Installing : libyaml-0.2.5-7.el9.x86_64 78/175 Installing : libdb-5.3.28-53.el9.x86_64 79/175 Installing : libeconf-0.4.1-2.el9.x86_64 80/175 Installing : alternatives-1.20-2.el9.x86_64 81/175 Installing : p11-kit-trust-0.24.1-2.el9.x86_64 82/175 Running scriptlet: p11-kit-trust-0.24.1-2.el9.x86_64 82/175 Installing : openssl-libs-1:3.0.7-6.el9_2.x86_64 83/175 Installing : coreutils-8.32-34.el9.x86_64 84/175 Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch 85/175 Installing : ca-certificates-2022.2.54-90.2.el9_0.noarch 85/175 Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch 85/175 Installing : systemd-libs-252-13.el9_2.x86_64 86/175 Running scriptlet: systemd-libs-252-13.el9_2.x86_64 86/175 Installing : libblkid-2.37.4-11.el9_2.x86_64 87/175 Running scriptlet: libblkid-2.37.4-11.el9_2.x86_64 87/175 Installing : libmount-2.37.4-11.el9_2.x86_64 88/175 Installing : krb5-libs-1.20.1-8.el9.x86_64 89/175 Installing : libfdisk-2.37.4-11.el9_2.x86_64 90/175 Installing : cyrus-sasl-lib-2.1.27-21.el9.x86_64 91/175 Installing : libssh-0.10.4-8.el9.x86_64 92/175 Installing : util-linux-core-2.37.4-11.el9_2.x86_64 93/175 Running scriptlet: util-linux-core-2.37.4-11.el9_2.x86_64 93/175 Installing : dbus-libs-1:1.12.20-7.el9_1.x86_64 94/175 Installing : python3-pip-wheel-21.2.3-6.el9.noarch 95/175 Installing : python3-3.9.16-1.el9.x86_64 96/175 Installing : python3-libs-3.9.16-1.el9.x86_64 97/175 Installing : python3-six-1.15.0-9.el9.noarch 98/175 Installing : python3-dateutil-1:2.8.1-6.el9.noarch 99/175 Installing : python3-iniparse-0.4-45.el9.noarch 100/175 Installing : python3-idna-2.10-7.el9.noarch 101/175 Installing : python3-setuptools-53.0.0-12.el9.noarch 102/175 Installing : python3-inotify-0.9.6-25.el9.noarch 103/175 Installing : python3-libcomps-0.1.18-1.el9.x86_64 104/175 Installing : python3-decorator-4.4.2-6.el9.noarch 105/175 Installing : python3-chardet-4.0.0-5.el9.noarch 106/175 Installing : python3-pysocks-1.7.1-12.el9.noarch 107/175 Installing : python3-urllib3-1.26.5-3.el9.noarch 108/175 Installing : python3-requests-2.25.1-6.el9.noarch 109/175 Installing : python3-cloud-what-1.29.33.1-1.el9_2.x86_64 110/175 Installing : python3-systemd-234-18.el9.x86_64 111/175 Installing : gzip-1.12-1.el9.x86_64 112/175 Installing : cracklib-2.9.6-27.el9.x86_64 113/175 Installing : cracklib-dicts-2.9.6-27.el9.x86_64 114/175 Installing : openssl-1:3.0.7-6.el9_2.x86_64 115/175 Installing : pam-1.5.1-14.el9.x86_64 116/175 Installing : libpwquality-1.4.4-8.el9.x86_64 117/175 Installing : util-linux-2.37.4-11.el9_2.x86_64 118/175 Installing : kmod-libs-28-7.el9.x86_64 119/175 Installing : dbus-1:1.12.20-7.el9_1.x86_64 120/175 Installing : systemd-pam-252-13.el9_2.x86_64 121/175 Running scriptlet: systemd-252-13.el9_2.x86_64 122/175 Installing : systemd-252-13.el9_2.x86_64 122/175 Running scriptlet: systemd-252-13.el9_2.x86_64 122/175 Installing : dbus-common-1:1.12.20-7.el9_1.noarch 123/175 Running scriptlet: dbus-common-1:1.12.20-7.el9_1.noarch 123/175 Created symlink /etc/systemd/system/sockets.target.wants/dbus.socket → /usr/lib/systemd/system/dbus.socket. Created symlink /etc/systemd/user/sockets.target.wants/dbus.socket → /usr/lib/systemd/user/dbus.socket. Running scriptlet: dbus-broker-28-7.el9.x86_64 124/175 Installing : dbus-broker-28-7.el9.x86_64 124/175 Running scriptlet: dbus-broker-28-7.el9.x86_64 124/175 Created symlink /etc/systemd/system/dbus.service → /usr/lib/systemd/system/dbus-broker.service. Created symlink /etc/systemd/user/dbus.service → /usr/lib/systemd/user/dbus-broker.service. Installing : elfutils-default-yama-scope-0.188-3.el9.noarch 125/175 Running scriptlet: elfutils-default-yama-scope-0.188-3.el9.noarch 125/175 Installing : elfutils-libs-0.188-3.el9.x86_64 126/175 Installing : libevent-2.1.12-6.el9.x86_64 127/175 Installing : openldap-2.6.2-3.el9.x86_64 128/175 Installing : libcurl-7.76.1-23.el9_2.1.x86_64 129/175 Running scriptlet: tpm2-tss-3.0.3-8.el9.x86_64 130/175 Installing : tpm2-tss-3.0.3-8.el9.x86_64 130/175 Installing : ima-evm-utils-1.4-4.el9.x86_64 131/175 Installing : curl-7.76.1-23.el9_2.1.x86_64 132/175 Installing : openldap-compat-2.6.2-3.el9.x86_64 133/175 Installing : libarchive-3.5.3-4.el9.x86_64 134/175 Installing : rpm-libs-4.16.1.3-22.el9.x86_64 135/175 Installing : rpm-4.16.1.3-22.el9.x86_64 136/175 Installing : libsolv-0.7.22-4.el9.x86_64 137/175 Installing : nettle-3.8-3.el9_0.x86_64 138/175 Installing : gnutls-3.7.6-20.el9_2.x86_64 139/175 Installing : glib2-2.68.4-6.el9.x86_64 140/175 Installing : python3-dbus-1.2.18-2.el9.x86_64 141/175 Installing : libmodulemd-2.13.0-2.el9.x86_64 142/175 Installing : libuser-0.63-12.el9.x86_64 143/175 Installing : gnupg2-2.3.3-2.el9_0.x86_64 144/175 Installing : gpgme-1.15.1-6.el9.x86_64 145/175 Installing : librepo-1.14.5-1.el9.x86_64 146/175 Installing : python3-librepo-1.14.5-1.el9.x86_64 147/175 Installing : python3-gpg-1.15.1-6.el9.x86_64 148/175 Installing : rpm-sign-libs-4.16.1.3-22.el9.x86_64 149/175 Installing : passwd-0.80-12.el9.x86_64 150/175 Installing : usermode-1.114-4.el9.x86_64 151/175 Installing : json-glib-1.6.6-1.el9.x86_64 152/175 Installing : librhsm-0.0.3-7.el9.x86_64 153/175 Installing : libdnf-0.69.0-3.el9_2.x86_64 154/175 Installing : python3-libdnf-0.69.0-3.el9_2.x86_64 155/175 Installing : python3-hawkey-0.69.0-3.el9_2.x86_64 156/175 Installing : gobject-introspection-1.68.0-11.el9.x86_64 157/175 Installing : python3-gobject-base-noarch-3.40.1-6.el9.noarch 158/175 Installing : python3-gobject-base-3.40.1-6.el9.x86_64 159/175 Installing : which-2.21-28.el9.x86_64 160/175 Installing : virt-what-1.25-3.el9.x86_64 161/175 Installing : libnl3-3.7.0-1.el9.x86_64 162/175 Installing : python3-ethtool-0.15-2.el9.x86_64 163/175 Installing : libgomp-11.3.1-4.3.el9.x86_64 164/175 Installing : rpm-build-libs-4.16.1.3-22.el9.x86_64 165/175 Installing : python3-rpm-4.16.1.3-22.el9.x86_64 166/175 Installing : python3-subscription-manager-rhsm-1.29.33.1-1.el 167/175 Installing : libreport-filesystem-2.15.2-6.el9.noarch 168/175 Installing : dnf-data-4.14.0-5.el9_2.noarch 169/175 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : python3-dnf-4.14.0-5.el9_2.noarch 170/175 Installing : dnf-4.14.0-5.el9_2.noarch 171/175 Running scriptlet: dnf-4.14.0-5.el9_2.noarch 171/175 Created symlink /etc/systemd/system/timers.target.wants/dnf-makecache.timer → /usr/lib/systemd/system/dnf-makecache.timer. Installing : python3-dnf-plugins-core-4.3.0-5.el9_2.noarch 172/175 Installing : libdnf-plugin-subscription-manager-1.29.33.1-1.e 173/175 Running scriptlet: subscription-manager-1.29.33.1-1.el9_2.x86_64 174/175 Installing : subscription-manager-1.29.33.1-1.el9_2.x86_64 174/175 Running scriptlet: subscription-manager-1.29.33.1-1.el9_2.x86_64 174/175 Created symlink /etc/systemd/system/multi-user.target.wants/rhsmcertd.service → /usr/lib/systemd/system/rhsmcertd.service. /var/tmp/rpm-tmp.lsFdgV: line 17: find: command not found /var/tmp/rpm-tmp.lsFdgV: line 17: xargs: command not found Installing : dnf-plugins-core-4.3.0-5.el9_2.noarch 175/175 Running scriptlet: filesystem-3.16-2.el9.x86_64 175/175 Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch 175/175 Running scriptlet: rpm-4.16.1.3-22.el9.x86_64 175/175 Running scriptlet: subscription-manager-1.29.33.1-1.el9_2.x86_64 175/175 Running scriptlet: dnf-plugins-core-4.3.0-5.el9_2.noarch 175/175 Verifying : json-glib-1.6.6-1.el9.x86_64 1/175 Verifying : libseccomp-2.5.2-2.el9.x86_64 2/175 Verifying : libpwquality-1.4.4-8.el9.x86_64 3/175 Verifying : libmodulemd-2.13.0-2.el9.x86_64 4/175 Verifying : libutempter-1.2.1-6.el9.x86_64 5/175 Verifying : python3-ethtool-0.15-2.el9.x86_64 6/175 Verifying : python3-iniparse-0.4-45.el9.noarch 7/175 Verifying : lz4-libs-1.9.3-5.el9.x86_64 8/175 Verifying : libassuan-2.5.5-3.el9.x86_64 9/175 Verifying : python3-decorator-4.4.2-6.el9.noarch 10/175 Verifying : libcap-2.48-8.el9.x86_64 11/175 Verifying : npth-1.6-8.el9.x86_64 12/175 Verifying : python3-urllib3-1.26.5-3.el9.noarch 13/175 Verifying : libacl-2.3.1-3.el9.x86_64 14/175 Verifying : python3-gpg-1.15.1-6.el9.x86_64 15/175 Verifying : libcap-ng-0.8.2-7.el9.x86_64 16/175 Verifying : python3-inotify-0.9.6-25.el9.noarch 17/175 Verifying : libnghttp2-1.43.0-5.el9.x86_64 18/175 Verifying : json-c-0.14-11.el9.x86_64 19/175 Verifying : filesystem-3.16-2.el9.x86_64 20/175 Verifying : kmod-libs-28-7.el9.x86_64 21/175 Verifying : python3-dbus-1.2.18-2.el9.x86_64 22/175 Verifying : pcre-8.44-3.el9.3.x86_64 23/175 Verifying : python3-idna-2.10-7.el9.noarch 24/175 Verifying : libreport-filesystem-2.15.2-6.el9.noarch 25/175 Verifying : sed-4.8-9.el9.x86_64 26/175 Verifying : ncurses-libs-6.2-8.20210508.el9.x86_64 27/175 Verifying : libcomps-0.1.18-1.el9.x86_64 28/175 Verifying : python3-libcomps-0.1.18-1.el9.x86_64 29/175 Verifying : grep-3.6-5.el9.x86_64 30/175 Verifying : libunistring-0.9.10-15.el9.x86_64 31/175 Verifying : basesystem-11-13.el9.noarch 32/175 Verifying : usermode-1.114-4.el9.x86_64 33/175 Verifying : libbrotli-1.0.9-6.el9.x86_64 34/175 Verifying : libverto-0.3.2-3.el9.x86_64 35/175 Verifying : ncurses-base-6.2-8.20210508.el9.noarch 36/175 Verifying : libxcrypt-4.4.18-3.el9.x86_64 37/175 Verifying : libyaml-0.2.5-7.el9.x86_64 38/175 Verifying : acl-2.3.1-3.el9.x86_64 39/175 Verifying : mpfr-4.1.0-7.el9.x86_64 40/175 Verifying : popt-1.18-8.el9.x86_64 41/175 Verifying : readline-8.1-4.el9.x86_64 42/175 Verifying : cracklib-2.9.6-27.el9.x86_64 43/175 Verifying : libidn2-2.3.0-7.el9.x86_64 44/175 Verifying : gpgme-1.15.1-6.el9.x86_64 45/175 Verifying : passwd-0.80-12.el9.x86_64 46/175 Verifying : libevent-2.1.12-6.el9.x86_64 47/175 Verifying : python3-requests-2.25.1-6.el9.noarch 48/175 Verifying : libgpg-error-1.42-5.el9.x86_64 49/175 Verifying : libffi-3.4.2-7.el9.x86_64 50/175 Verifying : libzstd-1.5.1-2.el9.x86_64 51/175 Verifying : p11-kit-0.24.1-2.el9.x86_64 52/175 Verifying : libpsl-0.21.1-5.el9.x86_64 53/175 Verifying : python3-chardet-4.0.0-5.el9.noarch 54/175 Verifying : python3-pysocks-1.7.1-12.el9.noarch 55/175 Verifying : librhsm-0.0.3-7.el9.x86_64 56/175 Verifying : publicsuffix-list-dafsa-20210518-3.el9.noarch 57/175 Verifying : libdb-5.3.28-53.el9.x86_64 58/175 Verifying : dmidecode-1:3.3-7.el9.x86_64 59/175 Verifying : gmp-1:6.2.0-10.el9.x86_64 60/175 Verifying : libeconf-0.4.1-2.el9.x86_64 61/175 Verifying : libsigsegv-2.13-4.el9.x86_64 62/175 Verifying : alternatives-1.20-2.el9.x86_64 63/175 Verifying : libattr-2.5.1-3.el9.x86_64 64/175 Verifying : ima-evm-utils-1.4-4.el9.x86_64 65/175 Verifying : bzip2-libs-1.0.8-8.el9.x86_64 66/175 Verifying : python3-pip-wheel-21.2.3-6.el9.noarch 67/175 Verifying : gdbm-libs-1:1.19-4.el9.x86_64 68/175 Verifying : ca-certificates-2022.2.54-90.2.el9_0.noarch 69/175 Verifying : nettle-3.8-3.el9_0.x86_64 70/175 Verifying : cracklib-dicts-2.9.6-27.el9.x86_64 71/175 Verifying : xz-libs-5.2.5-8.el9_0.x86_64 72/175 Verifying : which-2.21-28.el9.x86_64 73/175 Verifying : p11-kit-trust-0.24.1-2.el9.x86_64 74/175 Verifying : pcre2-syntax-10.40-2.el9.noarch 75/175 Verifying : python3-six-1.15.0-9.el9.noarch 76/175 Verifying : python3-systemd-234-18.el9.x86_64 77/175 Verifying : gawk-5.1.0-6.el9.x86_64 78/175 Verifying : gnupg2-2.3.3-2.el9_0.x86_64 79/175 Verifying : libnl3-3.7.0-1.el9.x86_64 80/175 Verifying : python3-dateutil-1:2.8.1-6.el9.noarch 81/175 Verifying : subscription-manager-rhsm-certificates-20220623- 82/175 Verifying : libcom_err-1.46.5-3.el9.x86_64 83/175 Verifying : libksba-1.5.1-6.el9_1.x86_64 84/175 Verifying : libdnf-0.69.0-3.el9_2.x86_64 85/175 Verifying : pcre2-10.40-2.el9.x86_64 86/175 Verifying : python3-gobject-base-noarch-3.40.1-6.el9.noarch 87/175 Verifying : dbus-1:1.12.20-7.el9_1.x86_64 88/175 Verifying : openldap-2.6.2-3.el9.x86_64 89/175 Verifying : libtasn1-4.16.0-8.el9_1.x86_64 90/175 Verifying : audit-libs-3.0.7-103.el9.x86_64 91/175 Verifying : bash-5.1.8-6.el9_1.x86_64 92/175 Verifying : krb5-libs-1.20.1-8.el9.x86_64 93/175 Verifying : dbus-common-1:1.12.20-7.el9_1.noarch 94/175 Verifying : tzdata-2023c-1.el9.noarch 95/175 Verifying : libsolv-0.7.22-4.el9.x86_64 96/175 Verifying : gzip-1.12-1.el9.x86_64 97/175 Verifying : sqlite-libs-3.34.1-6.el9_1.x86_64 98/175 Verifying : dbus-libs-1:1.12.20-7.el9_1.x86_64 99/175 Verifying : libselinux-3.5-1.el9.x86_64 100/175 Verifying : openldap-compat-2.6.2-3.el9.x86_64 101/175 Verifying : python3-libdnf-0.69.0-3.el9_2.x86_64 102/175 Verifying : python3-gobject-base-3.40.1-6.el9.x86_64 103/175 Verifying : cyrus-sasl-lib-2.1.27-21.el9.x86_64 104/175 Verifying : libxml2-2.9.13-3.el9_1.x86_64 105/175 Verifying : tpm2-tss-3.0.3-8.el9.x86_64 106/175 Verifying : dbus-broker-28-7.el9.x86_64 107/175 Verifying : python3-setuptools-wheel-53.0.0-12.el9.noarch 108/175 Verifying : keyutils-libs-1.6.3-1.el9.x86_64 109/175 Verifying : systemd-libs-252-13.el9_2.x86_64 110/175 Verifying : glibc-2.34-60.el9.x86_64 111/175 Verifying : systemd-rpm-macros-252-13.el9_2.noarch 112/175 Verifying : libgomp-11.3.1-4.3.el9.x86_64 113/175 Verifying : python3-setuptools-53.0.0-12.el9.noarch 114/175 Verifying : gobject-introspection-1.68.0-11.el9.x86_64 115/175 Verifying : expat-2.5.0-1.el9.x86_64 116/175 Verifying : setup-2.13.7-9.el9.noarch 117/175 Verifying : redhat-release-9.2-0.13.el9.x86_64 118/175 Verifying : libsemanage-3.5-1.el9.x86_64 119/175 Verifying : libdnf-plugin-subscription-manager-1.29.33.1-1.e 120/175 Verifying : shadow-utils-2:4.9-6.el9.x86_64 121/175 Verifying : python3-dnf-4.14.0-5.el9_2.noarch 122/175 Verifying : libstdc++-11.3.1-4.3.el9.x86_64 123/175 Verifying : subscription-manager-1.29.33.1-1.el9_2.x86_64 124/175 Verifying : libssh-0.10.4-8.el9.x86_64 125/175 Verifying : librepo-1.14.5-1.el9.x86_64 126/175 Verifying : python3-cloud-what-1.29.33.1-1.el9_2.x86_64 127/175 Verifying : libgcc-11.3.1-4.3.el9.x86_64 128/175 Verifying : python3-hawkey-0.69.0-3.el9_2.x86_64 129/175 Verifying : glibc-common-2.34-60.el9.x86_64 130/175 Verifying : elfutils-libs-0.188-3.el9.x86_64 131/175 Verifying : elfutils-default-yama-scope-0.188-3.el9.noarch 132/175 Verifying : libarchive-3.5.3-4.el9.x86_64 133/175 Verifying : rpm-libs-4.16.1.3-22.el9.x86_64 134/175 Verifying : python3-rpm-4.16.1.3-22.el9.x86_64 135/175 Verifying : dnf-data-4.14.0-5.el9_2.noarch 136/175 Verifying : systemd-pam-252-13.el9_2.x86_64 137/175 Verifying : python3-libs-3.9.16-1.el9.x86_64 138/175 Verifying : openssl-1:3.0.7-6.el9_2.x86_64 139/175 Verifying : gnutls-3.7.6-20.el9_2.x86_64 140/175 Verifying : dnf-4.14.0-5.el9_2.noarch 141/175 Verifying : libssh-config-0.10.4-8.el9.noarch 142/175 Verifying : coreutils-8.32-34.el9.x86_64 143/175 Verifying : python3-dnf-plugins-core-4.3.0-5.el9_2.noarch 144/175 Verifying : libuser-0.63-12.el9.x86_64 145/175 Verifying : zlib-1.2.11-39.el9.x86_64 146/175 Verifying : rpm-4.16.1.3-22.el9.x86_64 147/175 Verifying : coreutils-common-8.32-34.el9.x86_64 148/175 Verifying : libsepol-3.5-1.el9.x86_64 149/175 Verifying : crypto-policies-20221215-1.git9a18988.el9.noarch 150/175 Verifying : glibc-minimal-langpack-2.34-60.el9.x86_64 151/175 Verifying : python3-3.9.16-1.el9.x86_64 152/175 Verifying : file-libs-5.39-12.el9.x86_64 153/175 Verifying : rpm-build-libs-4.16.1.3-22.el9.x86_64 154/175 Verifying : openssl-libs-1:3.0.7-6.el9_2.x86_64 155/175 Verifying : lua-libs-5.4.4-3.el9.x86_64 156/175 Verifying : python3-librepo-1.14.5-1.el9.x86_64 157/175 Verifying : rpm-sign-libs-4.16.1.3-22.el9.x86_64 158/175 Verifying : glib2-2.68.4-6.el9.x86_64 159/175 Verifying : elfutils-libelf-0.188-3.el9.x86_64 160/175 Verifying : dnf-plugins-core-4.3.0-5.el9_2.noarch 161/175 Verifying : python3-subscription-manager-rhsm-1.29.33.1-1.el 162/175 Verifying : systemd-252-13.el9_2.x86_64 163/175 Verifying : pam-1.5.1-14.el9.x86_64 164/175 Verifying : virt-what-1.25-3.el9.x86_64 165/175 Verifying : libfdisk-2.37.4-11.el9_2.x86_64 166/175 Verifying : libcurl-7.76.1-23.el9_2.1.x86_64 167/175 Verifying : libgcrypt-1.10.0-10.el9_2.x86_64 168/175 Verifying : libblkid-2.37.4-11.el9_2.x86_64 169/175 Verifying : curl-7.76.1-23.el9_2.1.x86_64 170/175 Verifying : libmount-2.37.4-11.el9_2.x86_64 171/175 Verifying : libsmartcols-2.37.4-11.el9_2.x86_64 172/175 Verifying : util-linux-core-2.37.4-11.el9_2.x86_64 173/175 Verifying : util-linux-2.37.4-11.el9_2.x86_64 174/175 Verifying : libuuid-2.37.4-11.el9_2.x86_64 175/175 Installed products updated. Installed: acl-2.3.1-3.el9.x86_64 alternatives-1.20-2.el9.x86_64 audit-libs-3.0.7-103.el9.x86_64 basesystem-11-13.el9.noarch bash-5.1.8-6.el9_1.x86_64 bzip2-libs-1.0.8-8.el9.x86_64 ca-certificates-2022.2.54-90.2.el9_0.noarch coreutils-8.32-34.el9.x86_64 coreutils-common-8.32-34.el9.x86_64 cracklib-2.9.6-27.el9.x86_64 cracklib-dicts-2.9.6-27.el9.x86_64 crypto-policies-20221215-1.git9a18988.el9.noarch curl-7.76.1-23.el9_2.1.x86_64 cyrus-sasl-lib-2.1.27-21.el9.x86_64 dbus-1:1.12.20-7.el9_1.x86_64 dbus-broker-28-7.el9.x86_64 dbus-common-1:1.12.20-7.el9_1.noarch dbus-libs-1:1.12.20-7.el9_1.x86_64 dmidecode-1:3.3-7.el9.x86_64 dnf-4.14.0-5.el9_2.noarch dnf-data-4.14.0-5.el9_2.noarch dnf-plugins-core-4.3.0-5.el9_2.noarch elfutils-default-yama-scope-0.188-3.el9.noarch elfutils-libelf-0.188-3.el9.x86_64 elfutils-libs-0.188-3.el9.x86_64 expat-2.5.0-1.el9.x86_64 file-libs-5.39-12.el9.x86_64 filesystem-3.16-2.el9.x86_64 gawk-5.1.0-6.el9.x86_64 gdbm-libs-1:1.19-4.el9.x86_64 glib2-2.68.4-6.el9.x86_64 glibc-2.34-60.el9.x86_64 glibc-common-2.34-60.el9.x86_64 glibc-minimal-langpack-2.34-60.el9.x86_64 gmp-1:6.2.0-10.el9.x86_64 gnupg2-2.3.3-2.el9_0.x86_64 gnutls-3.7.6-20.el9_2.x86_64 gobject-introspection-1.68.0-11.el9.x86_64 gpgme-1.15.1-6.el9.x86_64 grep-3.6-5.el9.x86_64 gzip-1.12-1.el9.x86_64 ima-evm-utils-1.4-4.el9.x86_64 json-c-0.14-11.el9.x86_64 json-glib-1.6.6-1.el9.x86_64 keyutils-libs-1.6.3-1.el9.x86_64 kmod-libs-28-7.el9.x86_64 krb5-libs-1.20.1-8.el9.x86_64 libacl-2.3.1-3.el9.x86_64 libarchive-3.5.3-4.el9.x86_64 libassuan-2.5.5-3.el9.x86_64 libattr-2.5.1-3.el9.x86_64 libblkid-2.37.4-11.el9_2.x86_64 libbrotli-1.0.9-6.el9.x86_64 libcap-2.48-8.el9.x86_64 libcap-ng-0.8.2-7.el9.x86_64 libcom_err-1.46.5-3.el9.x86_64 libcomps-0.1.18-1.el9.x86_64 libcurl-7.76.1-23.el9_2.1.x86_64 libdb-5.3.28-53.el9.x86_64 libdnf-0.69.0-3.el9_2.x86_64 libdnf-plugin-subscription-manager-1.29.33.1-1.el9_2.x86_64 libeconf-0.4.1-2.el9.x86_64 libevent-2.1.12-6.el9.x86_64 libfdisk-2.37.4-11.el9_2.x86_64 libffi-3.4.2-7.el9.x86_64 libgcc-11.3.1-4.3.el9.x86_64 libgcrypt-1.10.0-10.el9_2.x86_64 libgomp-11.3.1-4.3.el9.x86_64 libgpg-error-1.42-5.el9.x86_64 libidn2-2.3.0-7.el9.x86_64 libksba-1.5.1-6.el9_1.x86_64 libmodulemd-2.13.0-2.el9.x86_64 libmount-2.37.4-11.el9_2.x86_64 libnghttp2-1.43.0-5.el9.x86_64 libnl3-3.7.0-1.el9.x86_64 libpsl-0.21.1-5.el9.x86_64 libpwquality-1.4.4-8.el9.x86_64 librepo-1.14.5-1.el9.x86_64 libreport-filesystem-2.15.2-6.el9.noarch librhsm-0.0.3-7.el9.x86_64 libseccomp-2.5.2-2.el9.x86_64 libselinux-3.5-1.el9.x86_64 libsemanage-3.5-1.el9.x86_64 libsepol-3.5-1.el9.x86_64 libsigsegv-2.13-4.el9.x86_64 libsmartcols-2.37.4-11.el9_2.x86_64 libsolv-0.7.22-4.el9.x86_64 libssh-0.10.4-8.el9.x86_64 libssh-config-0.10.4-8.el9.noarch libstdc++-11.3.1-4.3.el9.x86_64 libtasn1-4.16.0-8.el9_1.x86_64 libunistring-0.9.10-15.el9.x86_64 libuser-0.63-12.el9.x86_64 libutempter-1.2.1-6.el9.x86_64 libuuid-2.37.4-11.el9_2.x86_64 libverto-0.3.2-3.el9.x86_64 libxcrypt-4.4.18-3.el9.x86_64 libxml2-2.9.13-3.el9_1.x86_64 libyaml-0.2.5-7.el9.x86_64 libzstd-1.5.1-2.el9.x86_64 lua-libs-5.4.4-3.el9.x86_64 lz4-libs-1.9.3-5.el9.x86_64 mpfr-4.1.0-7.el9.x86_64 ncurses-base-6.2-8.20210508.el9.noarch ncurses-libs-6.2-8.20210508.el9.x86_64 nettle-3.8-3.el9_0.x86_64 npth-1.6-8.el9.x86_64 openldap-2.6.2-3.el9.x86_64 openldap-compat-2.6.2-3.el9.x86_64 openssl-1:3.0.7-6.el9_2.x86_64 openssl-libs-1:3.0.7-6.el9_2.x86_64 p11-kit-0.24.1-2.el9.x86_64 p11-kit-trust-0.24.1-2.el9.x86_64 pam-1.5.1-14.el9.x86_64 passwd-0.80-12.el9.x86_64 pcre-8.44-3.el9.3.x86_64 pcre2-10.40-2.el9.x86_64 pcre2-syntax-10.40-2.el9.noarch popt-1.18-8.el9.x86_64 publicsuffix-list-dafsa-20210518-3.el9.noarch python3-3.9.16-1.el9.x86_64 python3-chardet-4.0.0-5.el9.noarch python3-cloud-what-1.29.33.1-1.el9_2.x86_64 python3-dateutil-1:2.8.1-6.el9.noarch python3-dbus-1.2.18-2.el9.x86_64 python3-decorator-4.4.2-6.el9.noarch python3-dnf-4.14.0-5.el9_2.noarch python3-dnf-plugins-core-4.3.0-5.el9_2.noarch python3-ethtool-0.15-2.el9.x86_64 python3-gobject-base-3.40.1-6.el9.x86_64 python3-gobject-base-noarch-3.40.1-6.el9.noarch python3-gpg-1.15.1-6.el9.x86_64 python3-hawkey-0.69.0-3.el9_2.x86_64 python3-idna-2.10-7.el9.noarch python3-iniparse-0.4-45.el9.noarch python3-inotify-0.9.6-25.el9.noarch python3-libcomps-0.1.18-1.el9.x86_64 python3-libdnf-0.69.0-3.el9_2.x86_64 python3-librepo-1.14.5-1.el9.x86_64 python3-libs-3.9.16-1.el9.x86_64 python3-pip-wheel-21.2.3-6.el9.noarch python3-pysocks-1.7.1-12.el9.noarch python3-requests-2.25.1-6.el9.noarch python3-rpm-4.16.1.3-22.el9.x86_64 python3-setuptools-53.0.0-12.el9.noarch python3-setuptools-wheel-53.0.0-12.el9.noarch python3-six-1.15.0-9.el9.noarch python3-subscription-manager-rhsm-1.29.33.1-1.el9_2.x86_64 python3-systemd-234-18.el9.x86_64 python3-urllib3-1.26.5-3.el9.noarch readline-8.1-4.el9.x86_64 redhat-release-9.2-0.13.el9.x86_64 rpm-4.16.1.3-22.el9.x86_64 rpm-build-libs-4.16.1.3-22.el9.x86_64 rpm-libs-4.16.1.3-22.el9.x86_64 rpm-sign-libs-4.16.1.3-22.el9.x86_64 sed-4.8-9.el9.x86_64 setup-2.13.7-9.el9.noarch shadow-utils-2:4.9-6.el9.x86_64 sqlite-libs-3.34.1-6.el9_1.x86_64 subscription-manager-1.29.33.1-1.el9_2.x86_64 subscription-manager-rhsm-certificates-20220623-1.el9.noarch systemd-252-13.el9_2.x86_64 systemd-libs-252-13.el9_2.x86_64 systemd-pam-252-13.el9_2.x86_64 systemd-rpm-macros-252-13.el9_2.noarch tpm2-tss-3.0.3-8.el9.x86_64 tzdata-2023c-1.el9.noarch usermode-1.114-4.el9.x86_64 util-linux-2.37.4-11.el9_2.x86_64 util-linux-core-2.37.4-11.el9_2.x86_64 virt-what-1.25-3.el9.x86_64 which-2.21-28.el9.x86_64 xz-libs-5.2.5-8.el9_0.x86_64 zlib-1.2.11-39.el9.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 1.3 MB/s | 185 kB 00:00 Red Hat Enterprise Linux - BaseOS 16 MB/s | 12 MB 00:00 Red Hat Enterprise Linux - AppStream 27 MB/s | 21 MB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 8.4 MB/s | 5.6 MB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 3.1 MB/s | 15 MB 00:04 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: bash x86_64 5.1.8-6.el9_1 baseos 1.7 M bzip2 x86_64 1.0.8-8.el9 baseos 60 k coreutils x86_64 8.32-34.el9 baseos 1.2 M cpio x86_64 2.13-16.el9 baseos 279 k diffutils x86_64 3.7-12.el9 baseos 402 k epel-rpm-macros noarch 9-11.el9 epel 16 k findutils x86_64 1:4.8.0-5.el9 baseos 552 k gawk x86_64 5.1.0-6.el9 baseos 1.0 M glibc-minimal-langpack x86_64 2.34-60.el9 baseos 36 k grep x86_64 3.6-5.el9 baseos 273 k gzip x86_64 1.12-1.el9 baseos 167 k info x86_64 6.7-15.el9 baseos 228 k patch x86_64 2.7.6-16.el9 appstream 130 k redhat-release x86_64 9.2-0.13.el9 baseos 46 k redhat-rpm-config noarch 199-1.el9 appstream 76 k rpm-build x86_64 4.16.1.3-22.el9 appstream 105 k sed x86_64 4.8-9.el9 baseos 309 k shadow-utils x86_64 2:4.9-6.el9 baseos 1.2 M tar x86_64 2:1.34-6.el9_1 baseos 889 k unzip x86_64 6.0-56.el9 baseos 186 k util-linux x86_64 2.37.4-11.el9_2 baseos 2.3 M which x86_64 2.21-28.el9 baseos 45 k xz x86_64 5.2.5-8.el9_0 baseos 230 k Installing dependencies: alternatives x86_64 1.20-2.el9 baseos 40 k ansible-srpm-macros noarch 1-8.1.el9 epel 8.5 k audit-libs x86_64 3.0.7-103.el9 baseos 121 k basesystem noarch 11-13.el9 baseos 8.0 k binutils x86_64 2.35.2-37.el9 baseos 4.6 M binutils-gold x86_64 2.35.2-37.el9 baseos 734 k bzip2-libs x86_64 1.0.8-8.el9 baseos 42 k ca-certificates noarch 2022.2.54-90.2.el9_0 baseos 835 k coreutils-common x86_64 8.32-34.el9 baseos 2.0 M cracklib x86_64 2.9.6-27.el9 baseos 99 k cracklib-dicts x86_64 2.9.6-27.el9 baseos 3.6 M crypto-policies noarch 20221215-1.git9a18988.el9 baseos 85 k curl x86_64 7.76.1-23.el9_2.1 baseos 300 k cyrus-sasl-lib x86_64 2.1.27-21.el9 baseos 774 k dwz x86_64 0.14-3.el9 appstream 130 k ed x86_64 1.14.2-12.el9 baseos 78 k efi-srpm-macros noarch 6-2.el9_0 appstream 24 k elfutils x86_64 0.188-3.el9 baseos 533 k elfutils-debuginfod-client x86_64 0.188-3.el9 baseos 40 k elfutils-default-yama-scope noarch 0.188-3.el9 baseos 14 k elfutils-libelf x86_64 0.188-3.el9 baseos 198 k elfutils-libs x86_64 0.188-3.el9 baseos 256 k file x86_64 5.39-12.el9 baseos 52 k file-libs x86_64 5.39-12.el9 baseos 592 k filesystem x86_64 3.16-2.el9 baseos 4.7 M fonts-srpm-macros noarch 1:2.0.5-7.el9.1 appstream 29 k fpc-srpm-macros noarch 1.3-7.el9 epel 7.5 k gdb-minimal x86_64 10.2-10.el9 appstream 3.5 M gdbm-libs x86_64 1:1.19-4.el9 baseos 56 k ghc-srpm-macros noarch 1.5.0-6.el9 appstream 9.0 k glibc x86_64 2.34-60.el9 baseos 1.9 M glibc-common x86_64 2.34-60.el9 baseos 320 k glibc-gconv-extra x86_64 2.34-60.el9 baseos 1.7 M gmp x86_64 1:6.2.0-10.el9 baseos 320 k go-srpm-macros noarch 3.2.0-1.el9 appstream 29 k go-srpm-macros-epel noarch 1-8.el9 epel 22 k groff-base x86_64 1.22.4-10.el9 baseos 1.1 M kernel-srpm-macros noarch 1.0-12.el9 appstream 17 k keyutils-libs x86_64 1.6.3-1.el9 baseos 34 k krb5-libs x86_64 1.20.1-8.el9 baseos 731 k libacl x86_64 2.3.1-3.el9 baseos 26 k libarchive x86_64 3.5.3-4.el9 baseos 392 k libattr x86_64 2.5.1-3.el9 baseos 20 k libblkid x86_64 2.37.4-11.el9_2 baseos 109 k libbrotli x86_64 1.0.9-6.el9 baseos 317 k libcap x86_64 2.48-8.el9 baseos 76 k libcap-ng x86_64 0.8.2-7.el9 baseos 36 k libcom_err x86_64 1.46.5-3.el9 baseos 29 k libcurl x86_64 7.76.1-23.el9_2.1 baseos 288 k libdb x86_64 5.3.28-53.el9 baseos 740 k libeconf x86_64 0.4.1-2.el9 baseos 31 k libevent x86_64 2.1.12-6.el9 baseos 268 k libfdisk x86_64 2.37.4-11.el9_2 baseos 156 k libffi x86_64 3.4.2-7.el9 baseos 40 k libgcc x86_64 11.3.1-4.3.el9 baseos 114 k libgcrypt x86_64 1.10.0-10.el9_2 baseos 508 k libgomp x86_64 11.3.1-4.3.el9 baseos 288 k libgpg-error x86_64 1.42-5.el9 baseos 220 k libidn2 x86_64 2.3.0-7.el9 baseos 105 k libmount x86_64 2.37.4-11.el9_2 baseos 136 k libnghttp2 x86_64 1.43.0-5.el9 baseos 76 k libpkgconf x86_64 1.7.3-10.el9 baseos 37 k libpsl x86_64 0.21.1-5.el9 baseos 66 k libpwquality x86_64 1.4.4-8.el9 baseos 123 k libselinux x86_64 3.5-1.el9 baseos 88 k libsemanage x86_64 3.5-1.el9 baseos 121 k libsepol x86_64 3.5-1.el9 baseos 317 k libsigsegv x86_64 2.13-4.el9 baseos 30 k libsmartcols x86_64 2.37.4-11.el9_2 baseos 65 k libssh x86_64 0.10.4-8.el9 baseos 216 k libssh-config noarch 0.10.4-8.el9 baseos 11 k libstdc++ x86_64 11.3.1-4.3.el9 baseos 759 k libtasn1 x86_64 4.16.0-8.el9_1 baseos 77 k libunistring x86_64 0.9.10-15.el9 baseos 499 k libutempter x86_64 1.2.1-6.el9 baseos 30 k libuuid x86_64 2.37.4-11.el9_2 baseos 30 k libverto x86_64 0.3.2-3.el9 baseos 24 k libxcrypt x86_64 4.4.18-3.el9 baseos 120 k libxml2 x86_64 2.9.13-3.el9_1 baseos 752 k libzstd x86_64 1.5.1-2.el9 baseos 332 k lua-libs x86_64 5.4.4-3.el9 baseos 218 k lua-srpm-macros noarch 1-6.el9 appstream 10 k lz4-libs x86_64 1.9.3-5.el9 baseos 69 k mpfr x86_64 4.1.0-7.el9 baseos 329 k ncurses x86_64 6.2-8.20210508.el9 baseos 412 k ncurses-base noarch 6.2-8.20210508.el9 baseos 100 k ncurses-libs x86_64 6.2-8.20210508.el9 baseos 334 k ocaml-srpm-macros noarch 6-6.el9 appstream 9.1 k openblas-srpm-macros noarch 2-11.el9 appstream 8.6 k openldap x86_64 2.6.2-3.el9 baseos 287 k openssl x86_64 1:3.0.7-6.el9_2 baseos 1.2 M openssl-libs x86_64 1:3.0.7-6.el9_2 baseos 2.2 M p11-kit x86_64 0.24.1-2.el9 baseos 387 k p11-kit-trust x86_64 0.24.1-2.el9 baseos 148 k pam x86_64 1.5.1-14.el9 baseos 625 k pcre x86_64 8.44-3.el9.3 baseos 202 k pcre2 x86_64 10.40-2.el9 baseos 239 k pcre2-syntax noarch 10.40-2.el9 baseos 147 k perl-Carp noarch 1.50-460.el9 appstream 31 k perl-Class-Struct noarch 0.66-480.el9 appstream 24 k perl-Encode x86_64 4:3.08-462.el9 appstream 1.7 M perl-Errno x86_64 1.30-480.el9 appstream 17 k perl-Exporter noarch 5.74-461.el9 appstream 34 k perl-Fcntl x86_64 1.13-480.el9 appstream 23 k perl-File-Basename noarch 2.85-480.el9 appstream 19 k perl-File-Path noarch 2.18-4.el9 appstream 38 k perl-File-Temp noarch 1:0.231.100-4.el9 appstream 63 k perl-File-stat noarch 1.09-480.el9 appstream 19 k perl-Getopt-Long noarch 1:2.52-4.el9 appstream 64 k perl-Getopt-Std noarch 1.12-480.el9 appstream 17 k perl-HTTP-Tiny noarch 0.076-460.el9 appstream 58 k perl-IO x86_64 1.43-480.el9 appstream 94 k perl-IPC-Open3 noarch 1.21-480.el9 appstream 25 k perl-MIME-Base64 x86_64 3.16-4.el9 appstream 34 k perl-POSIX x86_64 1.94-480.el9 appstream 99 k perl-PathTools x86_64 3.78-461.el9 appstream 92 k perl-Pod-Escapes noarch 1:1.07-460.el9 appstream 22 k perl-Pod-Perldoc noarch 3.28.01-461.el9 appstream 92 k perl-Pod-Simple noarch 1:3.42-4.el9 appstream 229 k perl-Pod-Usage noarch 4:2.01-4.el9 appstream 43 k perl-Scalar-List-Utils x86_64 4:1.56-461.el9 appstream 77 k perl-SelectSaver noarch 1.02-480.el9 appstream 13 k perl-Socket x86_64 4:2.031-4.el9 appstream 58 k perl-Storable x86_64 1:3.21-460.el9 appstream 98 k perl-Symbol noarch 1.08-480.el9 appstream 16 k perl-Term-ANSIColor noarch 5.01-461.el9 appstream 51 k perl-Term-Cap noarch 1.17-460.el9 appstream 24 k perl-Text-ParseWords noarch 3.30-460.el9 appstream 18 k perl-Text-Tabs+Wrap noarch 2013.0523-460.el9 appstream 25 k perl-Time-Local noarch 2:1.300-7.el9 appstream 37 k perl-constant noarch 1.33-461.el9 appstream 25 k perl-if noarch 0.60.800-480.el9 appstream 16 k perl-interpreter x86_64 4:5.32.1-480.el9 appstream 75 k perl-libs x86_64 4:5.32.1-480.el9 appstream 2.2 M perl-mro x86_64 1.23-480.el9 appstream 31 k perl-overload noarch 1.31-480.el9 appstream 47 k perl-overloading noarch 0.02-480.el9 appstream 15 k perl-parent noarch 1:0.238-460.el9 appstream 16 k perl-podlators noarch 1:4.14-460.el9 appstream 118 k perl-srpm-macros noarch 1-41.el9 appstream 9.4 k perl-subs noarch 1.03-480.el9 appstream 13 k perl-vars noarch 1.05-480.el9 appstream 15 k pkgconf x86_64 1.7.3-10.el9 baseos 45 k pkgconf-m4 noarch 1.7.3-10.el9 baseos 16 k pkgconf-pkg-config x86_64 1.7.3-10.el9 baseos 12 k popt x86_64 1.18-8.el9 baseos 69 k publicsuffix-list-dafsa noarch 20210518-3.el9 baseos 59 k pyproject-srpm-macros noarch 1.6.2-1.el9 appstream 15 k python-srpm-macros noarch 3.9-52.el9 appstream 24 k qt5-srpm-macros noarch 5.15.3-1.el9 appstream 9.9 k readline x86_64 8.1-4.el9 baseos 215 k rpm x86_64 4.16.1.3-22.el9 baseos 542 k rpm-build-libs x86_64 4.16.1.3-22.el9 baseos 91 k rpm-libs x86_64 4.16.1.3-22.el9 baseos 309 k rpmautospec-rpm-macros noarch 0.3.5-1.el9 epel 9.1 k rust-srpm-macros noarch 17-4.el9 appstream 11 k setup noarch 2.13.7-9.el9 baseos 150 k sqlite-libs x86_64 3.34.1-6.el9_1 baseos 622 k systemd-libs x86_64 252-13.el9_2 baseos 652 k tzdata noarch 2023c-1.el9 baseos 845 k util-linux-core x86_64 2.37.4-11.el9_2 baseos 464 k xz-libs x86_64 5.2.5-8.el9_0 baseos 94 k zip x86_64 3.0-35.el9 baseos 270 k zlib x86_64 1.2.11-39.el9 baseos 94 k zstd x86_64 1.5.1-2.el9 baseos 552 k Transaction Summary ================================================================================ Install 188 Packages Total download size: 66 M Installed size: 210 M Downloading Packages: (1/188): libutempter-1.2.1-6.el9.x86_64.rpm 143 kB/s | 30 kB 00:00 (2/188): libpwquality-1.4.4-8.el9.x86_64.rpm 517 kB/s | 123 kB 00:00 (3/188): lz4-libs-1.9.3-5.el9.x86_64.rpm 282 kB/s | 69 kB 00:00 (4/188): bzip2-1.0.8-8.el9.x86_64.rpm 508 kB/s | 60 kB 00:00 (5/188): ed-1.14.2-12.el9.x86_64.rpm 634 kB/s | 78 kB 00:00 (6/188): libcap-2.48-8.el9.x86_64.rpm 252 kB/s | 76 kB 00:00 (7/188): libacl-2.3.1-3.el9.x86_64.rpm 238 kB/s | 26 kB 00:00 (8/188): ncurses-6.2-8.20210508.el9.x86_64.rpm 1.0 MB/s | 412 kB 00:00 (9/188): libnghttp2-1.43.0-5.el9.x86_64.rpm 702 kB/s | 76 kB 00:00 (10/188): libcap-ng-0.8.2-7.el9.x86_64.rpm 226 kB/s | 36 kB 00:00 (11/188): pcre-8.44-3.el9.3.x86_64.rpm 1.2 MB/s | 202 kB 00:00 (12/188): filesystem-3.16-2.el9.x86_64.rpm 19 MB/s | 4.7 MB 00:00 (13/188): info-6.7-15.el9.x86_64.rpm 1.2 MB/s | 228 kB 00:00 (14/188): groff-base-1.22.4-10.el9.x86_64.rpm 6.6 MB/s | 1.1 MB 00:00 (15/188): unzip-6.0-56.el9.x86_64.rpm 954 kB/s | 186 kB 00:00 (16/188): ncurses-libs-6.2-8.20210508.el9.x86_6 3.1 MB/s | 334 kB 00:00 (17/188): sed-4.8-9.el9.x86_64.rpm 1.4 MB/s | 309 kB 00:00 (18/188): grep-3.6-5.el9.x86_64.rpm 2.4 MB/s | 273 kB 00:00 (19/188): libunistring-0.9.10-15.el9.x86_64.rpm 4.6 MB/s | 499 kB 00:00 (20/188): basesystem-11-13.el9.noarch.rpm 72 kB/s | 8.0 kB 00:00 (21/188): libbrotli-1.0.9-6.el9.x86_64.rpm 3.0 MB/s | 317 kB 00:00 (22/188): ncurses-base-6.2-8.20210508.el9.noarc 976 kB/s | 100 kB 00:00 (23/188): libverto-0.3.2-3.el9.x86_64.rpm 214 kB/s | 24 kB 00:00 (24/188): libxcrypt-4.4.18-3.el9.x86_64.rpm 1.1 MB/s | 120 kB 00:00 (25/188): mpfr-4.1.0-7.el9.x86_64.rpm 2.7 MB/s | 329 kB 00:00 (26/188): readline-8.1-4.el9.x86_64.rpm 2.1 MB/s | 215 kB 00:00 (27/188): cracklib-2.9.6-27.el9.x86_64.rpm 893 kB/s | 99 kB 00:00 (28/188): libidn2-2.3.0-7.el9.x86_64.rpm 1.0 MB/s | 105 kB 00:00 (29/188): popt-1.18-8.el9.x86_64.rpm 221 kB/s | 69 kB 00:00 (30/188): libevent-2.1.12-6.el9.x86_64.rpm 2.3 MB/s | 268 kB 00:00 (31/188): libgpg-error-1.42-5.el9.x86_64.rpm 1.9 MB/s | 220 kB 00:00 (32/188): libzstd-1.5.1-2.el9.x86_64.rpm 2.6 MB/s | 332 kB 00:00 (33/188): p11-kit-0.24.1-2.el9.x86_64.rpm 3.0 MB/s | 387 kB 00:00 (34/188): libffi-3.4.2-7.el9.x86_64.rpm 147 kB/s | 40 kB 00:00 (35/188): libpsl-0.21.1-5.el9.x86_64.rpm 552 kB/s | 66 kB 00:00 (36/188): publicsuffix-list-dafsa-20210518-3.el 476 kB/s | 59 kB 00:00 (37/188): libdb-5.3.28-53.el9.x86_64.rpm 6.3 MB/s | 740 kB 00:00 (38/188): gmp-6.2.0-10.el9.x86_64.rpm 2.6 MB/s | 320 kB 00:00 (39/188): libeconf-0.4.1-2.el9.x86_64.rpm 318 kB/s | 31 kB 00:00 (40/188): libsigsegv-2.13-4.el9.x86_64.rpm 259 kB/s | 30 kB 00:00 (41/188): alternatives-1.20-2.el9.x86_64.rpm 360 kB/s | 40 kB 00:00 (42/188): libattr-2.5.1-3.el9.x86_64.rpm 146 kB/s | 20 kB 00:00 (43/188): bzip2-libs-1.0.8-8.el9.x86_64.rpm 442 kB/s | 42 kB 00:00 (44/188): cpio-2.13-16.el9.x86_64.rpm 2.3 MB/s | 279 kB 00:00 (45/188): gdbm-libs-1.19-4.el9.x86_64.rpm 511 kB/s | 56 kB 00:00 (46/188): findutils-4.8.0-5.el9.x86_64.rpm 2.5 MB/s | 552 kB 00:00 (47/188): cracklib-dicts-2.9.6-27.el9.x86_64.rp 21 MB/s | 3.6 MB 00:00 (48/188): ca-certificates-2022.2.54-90.2.el9_0. 3.1 MB/s | 835 kB 00:00 (49/188): xz-5.2.5-8.el9_0.x86_64.rpm 1.4 MB/s | 230 kB 00:00 (50/188): xz-libs-5.2.5-8.el9_0.x86_64.rpm 935 kB/s | 94 kB 00:00 (51/188): which-2.21-28.el9.x86_64.rpm 425 kB/s | 45 kB 00:00 (52/188): pcre2-syntax-10.40-2.el9.noarch.rpm 1.1 MB/s | 147 kB 00:00 (53/188): p11-kit-trust-0.24.1-2.el9.x86_64.rpm 883 kB/s | 148 kB 00:00 (54/188): zstd-1.5.1-2.el9.x86_64.rpm 4.0 MB/s | 552 kB 00:00 (55/188): diffutils-3.7-12.el9.x86_64.rpm 3.7 MB/s | 402 kB 00:00 (56/188): gawk-5.1.0-6.el9.x86_64.rpm 7.9 MB/s | 1.0 MB 00:00 (57/188): libcom_err-1.46.5-3.el9.x86_64.rpm 210 kB/s | 29 kB 00:00 (58/188): pcre2-10.40-2.el9.x86_64.rpm 1.9 MB/s | 239 kB 00:00 (59/188): tar-1.34-6.el9_1.x86_64.rpm 7.1 MB/s | 889 kB 00:00 (60/188): openldap-2.6.2-3.el9.x86_64.rpm 2.6 MB/s | 287 kB 00:00 (61/188): libtasn1-4.16.0-8.el9_1.x86_64.rpm 693 kB/s | 77 kB 00:00 (62/188): audit-libs-3.0.7-103.el9.x86_64.rpm 1.0 MB/s | 121 kB 00:00 (63/188): krb5-libs-1.20.1-8.el9.x86_64.rpm 6.3 MB/s | 731 kB 00:00 (64/188): bash-5.1.8-6.el9_1.x86_64.rpm 8.6 MB/s | 1.7 MB 00:00 (65/188): tzdata-2023c-1.el9.noarch.rpm 7.2 MB/s | 845 kB 00:00 (66/188): gzip-1.12-1.el9.x86_64.rpm 1.4 MB/s | 167 kB 00:00 (67/188): sqlite-libs-3.34.1-6.el9_1.x86_64.rpm 5.4 MB/s | 622 kB 00:00 (68/188): cyrus-sasl-lib-2.1.27-21.el9.x86_64.r 5.9 MB/s | 774 kB 00:00 (69/188): libselinux-3.5-1.el9.x86_64.rpm 284 kB/s | 88 kB 00:00 (70/188): keyutils-libs-1.6.3-1.el9.x86_64.rpm 230 kB/s | 34 kB 00:00 (71/188): libxml2-2.9.13-3.el9_1.x86_64.rpm 2.1 MB/s | 752 kB 00:00 (72/188): glibc-2.34-60.el9.x86_64.rpm 12 MB/s | 1.9 MB 00:00 (73/188): systemd-libs-252-13.el9_2.x86_64.rpm 2.6 MB/s | 652 kB 00:00 (74/188): libgomp-11.3.1-4.3.el9.x86_64.rpm 2.8 MB/s | 288 kB 00:00 (75/188): elfutils-0.188-3.el9.x86_64.rpm 2.6 MB/s | 533 kB 00:00 (76/188): pkgconf-pkg-config-1.7.3-10.el9.x86_6 88 kB/s | 12 kB 00:00 (77/188): setup-2.13.7-9.el9.noarch.rpm 1.4 MB/s | 150 kB 00:00 (78/188): redhat-release-9.2-0.13.el9.x86_64.rp 413 kB/s | 46 kB 00:00 (79/188): libsemanage-3.5-1.el9.x86_64.rpm 925 kB/s | 121 kB 00:00 (80/188): libstdc++-11.3.1-4.3.el9.x86_64.rpm 6.9 MB/s | 759 kB 00:00 (81/188): shadow-utils-4.9-6.el9.x86_64.rpm 6.9 MB/s | 1.2 MB 00:00 (82/188): libssh-0.10.4-8.el9.x86_64.rpm 2.0 MB/s | 216 kB 00:00 (83/188): libgcc-11.3.1-4.3.el9.x86_64.rpm 1.1 MB/s | 114 kB 00:00 (84/188): glibc-common-2.34-60.el9.x86_64.rpm 3.0 MB/s | 320 kB 00:00 (85/188): binutils-2.35.2-37.el9.x86_64.rpm 28 MB/s | 4.6 MB 00:00 (86/188): elfutils-libs-0.188-3.el9.x86_64.rpm 2.3 MB/s | 256 kB 00:00 (87/188): elfutils-default-yama-scope-0.188-3.e 139 kB/s | 14 kB 00:00 (88/188): rpm-libs-4.16.1.3-22.el9.x86_64.rpm 2.9 MB/s | 309 kB 00:00 (89/188): libarchive-3.5.3-4.el9.x86_64.rpm 3.3 MB/s | 392 kB 00:00 (90/188): glibc-gconv-extra-2.34-60.el9.x86_64. 11 MB/s | 1.7 MB 00:00 (91/188): openssl-3.0.7-6.el9_2.x86_64.rpm 8.0 MB/s | 1.2 MB 00:00 (92/188): elfutils-debuginfod-client-0.188-3.el 248 kB/s | 40 kB 00:00 (93/188): pkgconf-1.7.3-10.el9.x86_64.rpm 430 kB/s | 45 kB 00:00 (94/188): libssh-config-0.10.4-8.el9.noarch.rpm 110 kB/s | 11 kB 00:00 (95/188): coreutils-8.32-34.el9.x86_64.rpm 9.4 MB/s | 1.2 MB 00:00 (96/188): rpm-4.16.1.3-22.el9.x86_64.rpm 4.9 MB/s | 542 kB 00:00 (97/188): zlib-1.2.11-39.el9.x86_64.rpm 622 kB/s | 94 kB 00:00 (98/188): coreutils-common-8.32-34.el9.x86_64.r 13 MB/s | 2.0 MB 00:00 (99/188): libsepol-3.5-1.el9.x86_64.rpm 3.0 MB/s | 317 kB 00:00 (100/188): crypto-policies-20221215-1.git9a1898 668 kB/s | 85 kB 00:00 (101/188): binutils-gold-2.35.2-37.el9.x86_64.r 6.8 MB/s | 734 kB 00:00 (102/188): glibc-minimal-langpack-2.34-60.el9.x 346 kB/s | 36 kB 00:00 (103/188): file-libs-5.39-12.el9.x86_64.rpm 5.5 MB/s | 592 kB 00:00 (104/188): rpm-build-libs-4.16.1.3-22.el9.x86_6 926 kB/s | 91 kB 00:00 (105/188): pkgconf-m4-1.7.3-10.el9.noarch.rpm 158 kB/s | 16 kB 00:00 (106/188): lua-libs-5.4.4-3.el9.x86_64.rpm 1.8 MB/s | 218 kB 00:00 (107/188): elfutils-libelf-0.188-3.el9.x86_64.r 1.9 MB/s | 198 kB 00:00 (108/188): openssl-libs-3.0.7-6.el9_2.x86_64.rp 13 MB/s | 2.2 MB 00:00 (109/188): libpkgconf-1.7.3-10.el9.x86_64.rpm 351 kB/s | 37 kB 00:00 (110/188): zip-3.0-35.el9.x86_64.rpm 2.7 MB/s | 270 kB 00:00 (111/188): file-5.39-12.el9.x86_64.rpm 524 kB/s | 52 kB 00:00 (112/188): libfdisk-2.37.4-11.el9_2.x86_64.rpm 1.5 MB/s | 156 kB 00:00 (113/188): libcurl-7.76.1-23.el9_2.1.x86_64.rpm 2.2 MB/s | 288 kB 00:00 (114/188): pam-1.5.1-14.el9.x86_64.rpm 4.7 MB/s | 625 kB 00:00 (115/188): libgcrypt-1.10.0-10.el9_2.x86_64.rpm 4.7 MB/s | 508 kB 00:00 (116/188): libblkid-2.37.4-11.el9_2.x86_64.rpm 1.0 MB/s | 109 kB 00:00 (117/188): curl-7.76.1-23.el9_2.1.x86_64.rpm 2.7 MB/s | 300 kB 00:00 (118/188): libmount-2.37.4-11.el9_2.x86_64.rpm 1.2 MB/s | 136 kB 00:00 (119/188): libsmartcols-2.37.4-11.el9_2.x86_64. 638 kB/s | 65 kB 00:00 (120/188): util-linux-core-2.37.4-11.el9_2.x86_ 4.0 MB/s | 464 kB 00:00 (121/188): libuuid-2.37.4-11.el9_2.x86_64.rpm 222 kB/s | 30 kB 00:00 (122/188): lua-srpm-macros-1-6.el9.noarch.rpm 85 kB/s | 10 kB 00:00 (123/188): util-linux-2.37.4-11.el9_2.x86_64.rp 13 MB/s | 2.3 MB 00:00 (124/188): rust-srpm-macros-17-4.el9.noarch.rpm 96 kB/s | 11 kB 00:00 (125/188): ghc-srpm-macros-1.5.0-6.el9.noarch.r 76 kB/s | 9.0 kB 00:00 (126/188): perl-Pod-Simple-3.42-4.el9.noarch.rp 2.1 MB/s | 229 kB 00:00 (127/188): perl-Term-Cap-1.17-460.el9.noarch.rp 244 kB/s | 24 kB 00:00 (128/188): perl-Time-Local-1.300-7.el9.noarch.r 355 kB/s | 37 kB 00:00 (129/188): perl-Encode-3.08-462.el9.x86_64.rpm 12 MB/s | 1.7 MB 00:00 (130/188): perl-Pod-Escapes-1.07-460.el9.noarch 205 kB/s | 22 kB 00:00 (131/188): python-srpm-macros-3.9-52.el9.noarch 241 kB/s | 24 kB 00:00 (132/188): perl-podlators-4.14-460.el9.noarch.r 948 kB/s | 118 kB 00:00 (133/188): perl-srpm-macros-1-41.el9.noarch.rpm 87 kB/s | 9.4 kB 00:00 (134/188): perl-Storable-3.21-460.el9.x86_64.rp 675 kB/s | 98 kB 00:00 (135/188): perl-Text-Tabs+Wrap-2013.0523-460.el 231 kB/s | 25 kB 00:00 (136/188): dwz-0.14-3.el9.x86_64.rpm 1.1 MB/s | 130 kB 00:00 (137/188): perl-MIME-Base64-3.16-4.el9.x86_64.r 301 kB/s | 34 kB 00:00 (138/188): perl-File-Temp-0.231.100-4.el9.noarc 415 kB/s | 63 kB 00:00 (139/188): perl-Exporter-5.74-461.el9.noarch.rp 338 kB/s | 34 kB 00:00 (140/188): perl-parent-0.238-460.el9.noarch.rpm 151 kB/s | 16 kB 00:00 (141/188): perl-Getopt-Long-2.52-4.el9.noarch.r 625 kB/s | 64 kB 00:00 (142/188): perl-Socket-2.031-4.el9.x86_64.rpm 556 kB/s | 58 kB 00:00 (143/188): openblas-srpm-macros-2-11.el9.noarch 60 kB/s | 8.6 kB 00:00 (144/188): perl-Term-ANSIColor-5.01-461.el9.noa 478 kB/s | 51 kB 00:00 (145/188): perl-Scalar-List-Utils-1.56-461.el9. 708 kB/s | 77 kB 00:00 (146/188): perl-constant-1.33-461.el9.noarch.rp 180 kB/s | 25 kB 00:00 (147/188): perl-File-Path-2.18-4.el9.noarch.rpm 336 kB/s | 38 kB 00:00 (148/188): efi-srpm-macros-6-2.el9_0.noarch.rpm 196 kB/s | 24 kB 00:00 (149/188): perl-Text-ParseWords-3.30-460.el9.no 177 kB/s | 18 kB 00:00 (150/188): perl-HTTP-Tiny-0.076-460.el9.noarch. 554 kB/s | 58 kB 00:00 (151/188): perl-Pod-Usage-2.01-4.el9.noarch.rpm 335 kB/s | 43 kB 00:00 (152/188): patch-2.7.6-16.el9.x86_64.rpm 954 kB/s | 130 kB 00:00 (153/188): perl-Pod-Perldoc-3.28.01-461.el9.noa 683 kB/s | 92 kB 00:00 (154/188): fonts-srpm-macros-2.0.5-7.el9.1.noar 279 kB/s | 29 kB 00:00 (155/188): ocaml-srpm-macros-6-6.el9.noarch.rpm 84 kB/s | 9.1 kB 00:00 (156/188): perl-Carp-1.50-460.el9.noarch.rpm 286 kB/s | 31 kB 00:00 (157/188): perl-PathTools-3.78-461.el9.x86_64.r 908 kB/s | 92 kB 00:00 (158/188): pyproject-srpm-macros-1.6.2-1.el9.no 144 kB/s | 15 kB 00:00 (159/188): qt5-srpm-macros-5.15.3-1.el9.noarch. 58 kB/s | 9.9 kB 00:00 (160/188): gdb-minimal-10.2-10.el9.x86_64.rpm 17 MB/s | 3.5 MB 00:00 (161/188): perl-overload-1.31-480.el9.noarch.rp 421 kB/s | 47 kB 00:00 (162/188): perl-Class-Struct-0.66-480.el9.noarc 131 kB/s | 24 kB 00:00 (163/188): perl-libs-5.32.1-480.el9.x86_64.rpm 15 MB/s | 2.2 MB 00:00 (164/188): go-srpm-macros-3.2.0-1.el9.noarch.rp 256 kB/s | 29 kB 00:00 (165/188): perl-Errno-1.30-480.el9.x86_64.rpm 146 kB/s | 17 kB 00:00 (166/188): perl-Symbol-1.08-480.el9.noarch.rpm 119 kB/s | 16 kB 00:00 (167/188): kernel-srpm-macros-1.0-12.el9.noarch 162 kB/s | 17 kB 00:00 (168/188): perl-POSIX-1.94-480.el9.x86_64.rpm 916 kB/s | 99 kB 00:00 (169/188): perl-File-stat-1.09-480.el9.noarch.r 190 kB/s | 19 kB 00:00 (170/188): redhat-rpm-config-199-1.el9.noarch.r 734 kB/s | 76 kB 00:00 (171/188): perl-overloading-0.02-480.el9.noarch 143 kB/s | 15 kB 00:00 (172/188): perl-mro-1.23-480.el9.x86_64.rpm 279 kB/s | 31 kB 00:00 (173/188): perl-IPC-Open3-1.21-480.el9.noarch.r 252 kB/s | 25 kB 00:00 (174/188): perl-Fcntl-1.13-480.el9.x86_64.rpm 219 kB/s | 23 kB 00:00 (175/188): perl-File-Basename-2.85-480.el9.noar 193 kB/s | 19 kB 00:00 (176/188): perl-interpreter-5.32.1-480.el9.x86_ 698 kB/s | 75 kB 00:00 (177/188): perl-SelectSaver-1.02-480.el9.noarch 134 kB/s | 13 kB 00:00 (178/188): rpm-build-4.16.1.3-22.el9.x86_64.rpm 812 kB/s | 105 kB 00:00 (179/188): perl-Getopt-Std-1.12-480.el9.noarch. 144 kB/s | 17 kB 00:00 (180/188): perl-vars-1.05-480.el9.noarch.rpm 144 kB/s | 15 kB 00:00 (181/188): perl-IO-1.43-480.el9.x86_64.rpm 848 kB/s | 94 kB 00:00 (182/188): perl-if-0.60.800-480.el9.noarch.rpm 126 kB/s | 16 kB 00:00 (183/188): perl-subs-1.03-480.el9.noarch.rpm 114 kB/s | 13 kB 00:00 (184/188): ansible-srpm-macros-1-8.1.el9.noarch 51 kB/s | 8.5 kB 00:00 (185/188): epel-rpm-macros-9-11.el9.noarch.rpm 85 kB/s | 16 kB 00:00 (186/188): fpc-srpm-macros-1.3-7.el9.noarch.rpm 39 kB/s | 7.5 kB 00:00 (187/188): go-srpm-macros-epel-1-8.el9.noarch.r 331 kB/s | 22 kB 00:00 (188/188): rpmautospec-rpm-macros-0.3.5-1.el9.n 162 kB/s | 9.1 kB 00:00 -------------------------------------------------------------------------------- Total 7.8 MB/s | 66 MB 00:08 Red Hat Enterprise Linux - BaseOS 3.5 MB/s | 3.6 kB 00:00 Importing GPG key 0xFD431D51: Userid : "Red Hat, Inc. (release key 2) " Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51 From : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release Key imported successfully Importing GPG key 0x5A6340B3: Userid : "Red Hat, Inc. (auxiliary key 3) " Fingerprint: 7E46 2425 8C40 6535 D56D 6F13 5054 E4A4 5A63 40B3 From : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat9-release Key imported successfully Extra Packages for Enterprise Linux 9 - x86_64 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x3228467C: Userid : "Fedora (epel9) " Fingerprint: FF8A D134 4597 106E CE81 3B91 8A38 72BF 3228 467C From : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-9 Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.16-2.el9.x86_64 1/1 Preparing : 1/1 Installing : libgcc-11.3.1-4.3.el9.x86_64 1/188 Running scriptlet: libgcc-11.3.1-4.3.el9.x86_64 1/188 Installing : crypto-policies-20221215-1.git9a18988.el9.noarch 2/188 Running scriptlet: crypto-policies-20221215-1.git9a18988.el9.noarch 2/188 Installing : redhat-release-9.2-0.13.el9.x86_64 3/188 Installing : setup-2.13.7-9.el9.noarch 4/188 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-9.el9.noarch 4/188 Installing : filesystem-3.16-2.el9.x86_64 5/188 Installing : basesystem-11-13.el9.noarch 6/188 Installing : fpc-srpm-macros-1.3-7.el9.noarch 7/188 Installing : ansible-srpm-macros-1-8.1.el9.noarch 8/188 Installing : pyproject-srpm-macros-1.6.2-1.el9.noarch 9/188 Installing : qt5-srpm-macros-5.15.3-1.el9.noarch 10/188 Installing : ocaml-srpm-macros-6-6.el9.noarch 11/188 Installing : openblas-srpm-macros-2-11.el9.noarch 12/188 Installing : 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libutempter-1.2.1-6.el9.x86_64 138/188 Installing : patch-2.7.6-16.el9.x86_64 139/188 Installing : libtasn1-4.16.0-8.el9_1.x86_64 140/188 Installing : p11-kit-trust-0.24.1-2.el9.x86_64 141/188 Running scriptlet: p11-kit-trust-0.24.1-2.el9.x86_64 141/188 Installing : openssl-libs-1:3.0.7-6.el9_2.x86_64 142/188 Installing : coreutils-8.32-34.el9.x86_64 143/188 Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch 144/188 Installing : ca-certificates-2022.2.54-90.2.el9_0.noarch 144/188 Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch 144/188 Installing : libblkid-2.37.4-11.el9_2.x86_64 145/188 Running scriptlet: libblkid-2.37.4-11.el9_2.x86_64 145/188 Installing : libmount-2.37.4-11.el9_2.x86_64 146/188 Installing : gzip-1.12-1.el9.x86_64 147/188 Installing : cracklib-2.9.6-27.el9.x86_64 148/188 Installing : systemd-libs-252-13.el9_2.x86_64 149/188 Running scriptlet: systemd-libs-252-13.el9_2.x86_64 149/188 Installing : util-linux-core-2.37.4-11.el9_2.x86_64 150/188 Running scriptlet: util-linux-core-2.37.4-11.el9_2.x86_64 150/188 Installing : cracklib-dicts-2.9.6-27.el9.x86_64 151/188 Installing : libfdisk-2.37.4-11.el9_2.x86_64 152/188 Installing : openssl-1:3.0.7-6.el9_2.x86_64 153/188 Installing : pam-1.5.1-14.el9.x86_64 154/188 Installing : libpwquality-1.4.4-8.el9.x86_64 155/188 Installing : libevent-2.1.12-6.el9.x86_64 156/188 Installing : libarchive-3.5.3-4.el9.x86_64 157/188 Installing : keyutils-libs-1.6.3-1.el9.x86_64 158/188 Installing : krb5-libs-1.20.1-8.el9.x86_64 159/188 Installing : cyrus-sasl-lib-2.1.27-21.el9.x86_64 160/188 Installing : openldap-2.6.2-3.el9.x86_64 161/188 Installing : libssh-0.10.4-8.el9.x86_64 162/188 Installing : libcurl-7.76.1-23.el9_2.1.x86_64 163/188 Installing : elfutils-debuginfod-client-0.188-3.el9.x86_64 164/188 Installing : binutils-gold-2.35.2-37.el9.x86_64 165/188 Installing : binutils-2.35.2-37.el9.x86_64 166/188 Running scriptlet: binutils-2.35.2-37.el9.x86_64 166/188 Installing : elfutils-0.188-3.el9.x86_64 167/188 Installing : gdb-minimal-10.2-10.el9.x86_64 168/188 Installing : curl-7.76.1-23.el9_2.1.x86_64 169/188 Installing : rpm-libs-4.16.1.3-22.el9.x86_64 170/188 Installing : rpm-4.16.1.3-22.el9.x86_64 171/188 Installing : lua-srpm-macros-1-6.el9.noarch 172/188 Installing : efi-srpm-macros-6-2.el9_0.noarch 173/188 Installing : python-srpm-macros-3.9-52.el9.noarch 174/188 Installing : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch 175/188 Installing : go-srpm-macros-3.2.0-1.el9.noarch 176/188 Installing : redhat-rpm-config-199-1.el9.noarch 177/188 Installing : go-srpm-macros-epel-1-8.el9.noarch 178/188 Installing : rpmautospec-rpm-macros-0.3.5-1.el9.noarch 179/188 Installing : libgomp-11.3.1-4.3.el9.x86_64 180/188 Installing : rpm-build-libs-4.16.1.3-22.el9.x86_64 181/188 Installing : libpkgconf-1.7.3-10.el9.x86_64 182/188 Installing : pkgconf-1.7.3-10.el9.x86_64 183/188 Installing : pkgconf-pkg-config-1.7.3-10.el9.x86_64 184/188 Installing : rpm-build-4.16.1.3-22.el9.x86_64 185/188 Installing : epel-rpm-macros-9-11.el9.noarch 186/188 Installing : util-linux-2.37.4-11.el9_2.x86_64 187/188 Installing : which-2.21-28.el9.x86_64 188/188 Running scriptlet: filesystem-3.16-2.el9.x86_64 188/188 Running scriptlet: ca-certificates-2022.2.54-90.2.el9_0.noarch 188/188 Running scriptlet: rpm-4.16.1.3-22.el9.x86_64 188/188 Running scriptlet: which-2.21-28.el9.x86_64 188/188 Verifying : libpwquality-1.4.4-8.el9.x86_64 1/188 Verifying : libutempter-1.2.1-6.el9.x86_64 2/188 Verifying : lz4-libs-1.9.3-5.el9.x86_64 3/188 Verifying : bzip2-1.0.8-8.el9.x86_64 4/188 Verifying : libcap-2.48-8.el9.x86_64 5/188 Verifying : ncurses-6.2-8.20210508.el9.x86_64 6/188 Verifying : ed-1.14.2-12.el9.x86_64 7/188 Verifying : libacl-2.3.1-3.el9.x86_64 8/188 Verifying : libcap-ng-0.8.2-7.el9.x86_64 9/188 Verifying : libnghttp2-1.43.0-5.el9.x86_64 10/188 Verifying : filesystem-3.16-2.el9.x86_64 11/188 Verifying : pcre-8.44-3.el9.3.x86_64 12/188 Verifying : info-6.7-15.el9.x86_64 13/188 Verifying : groff-base-1.22.4-10.el9.x86_64 14/188 Verifying : unzip-6.0-56.el9.x86_64 15/188 Verifying : sed-4.8-9.el9.x86_64 16/188 Verifying : ncurses-libs-6.2-8.20210508.el9.x86_64 17/188 Verifying : grep-3.6-5.el9.x86_64 18/188 Verifying : libunistring-0.9.10-15.el9.x86_64 19/188 Verifying : basesystem-11-13.el9.noarch 20/188 Verifying : libbrotli-1.0.9-6.el9.x86_64 21/188 Verifying : libverto-0.3.2-3.el9.x86_64 22/188 Verifying : ncurses-base-6.2-8.20210508.el9.noarch 23/188 Verifying : libxcrypt-4.4.18-3.el9.x86_64 24/188 Verifying : mpfr-4.1.0-7.el9.x86_64 25/188 Verifying : popt-1.18-8.el9.x86_64 26/188 Verifying : readline-8.1-4.el9.x86_64 27/188 Verifying : cracklib-2.9.6-27.el9.x86_64 28/188 Verifying : libidn2-2.3.0-7.el9.x86_64 29/188 Verifying : libevent-2.1.12-6.el9.x86_64 30/188 Verifying : libgpg-error-1.42-5.el9.x86_64 31/188 Verifying : libffi-3.4.2-7.el9.x86_64 32/188 Verifying : libzstd-1.5.1-2.el9.x86_64 33/188 Verifying : p11-kit-0.24.1-2.el9.x86_64 34/188 Verifying : libpsl-0.21.1-5.el9.x86_64 35/188 Verifying : publicsuffix-list-dafsa-20210518-3.el9.noarch 36/188 Verifying : libdb-5.3.28-53.el9.x86_64 37/188 Verifying : gmp-1:6.2.0-10.el9.x86_64 38/188 Verifying : libeconf-0.4.1-2.el9.x86_64 39/188 Verifying : libsigsegv-2.13-4.el9.x86_64 40/188 Verifying : alternatives-1.20-2.el9.x86_64 41/188 Verifying : libattr-2.5.1-3.el9.x86_64 42/188 Verifying : bzip2-libs-1.0.8-8.el9.x86_64 43/188 Verifying : cpio-2.13-16.el9.x86_64 44/188 Verifying : findutils-1:4.8.0-5.el9.x86_64 45/188 Verifying : gdbm-libs-1:1.19-4.el9.x86_64 46/188 Verifying : ca-certificates-2022.2.54-90.2.el9_0.noarch 47/188 Verifying : cracklib-dicts-2.9.6-27.el9.x86_64 48/188 Verifying : xz-5.2.5-8.el9_0.x86_64 49/188 Verifying : xz-libs-5.2.5-8.el9_0.x86_64 50/188 Verifying : which-2.21-28.el9.x86_64 51/188 Verifying : p11-kit-trust-0.24.1-2.el9.x86_64 52/188 Verifying : pcre2-syntax-10.40-2.el9.noarch 53/188 Verifying : zstd-1.5.1-2.el9.x86_64 54/188 Verifying : diffutils-3.7-12.el9.x86_64 55/188 Verifying : gawk-5.1.0-6.el9.x86_64 56/188 Verifying : libcom_err-1.46.5-3.el9.x86_64 57/188 Verifying : pcre2-10.40-2.el9.x86_64 58/188 Verifying : tar-2:1.34-6.el9_1.x86_64 59/188 Verifying : openldap-2.6.2-3.el9.x86_64 60/188 Verifying : libtasn1-4.16.0-8.el9_1.x86_64 61/188 Verifying : audit-libs-3.0.7-103.el9.x86_64 62/188 Verifying : bash-5.1.8-6.el9_1.x86_64 63/188 Verifying : krb5-libs-1.20.1-8.el9.x86_64 64/188 Verifying : tzdata-2023c-1.el9.noarch 65/188 Verifying : gzip-1.12-1.el9.x86_64 66/188 Verifying : sqlite-libs-3.34.1-6.el9_1.x86_64 67/188 Verifying : libselinux-3.5-1.el9.x86_64 68/188 Verifying : cyrus-sasl-lib-2.1.27-21.el9.x86_64 69/188 Verifying : libxml2-2.9.13-3.el9_1.x86_64 70/188 Verifying : keyutils-libs-1.6.3-1.el9.x86_64 71/188 Verifying : systemd-libs-252-13.el9_2.x86_64 72/188 Verifying : glibc-2.34-60.el9.x86_64 73/188 Verifying : elfutils-0.188-3.el9.x86_64 74/188 Verifying : libgomp-11.3.1-4.3.el9.x86_64 75/188 Verifying : pkgconf-pkg-config-1.7.3-10.el9.x86_64 76/188 Verifying : setup-2.13.7-9.el9.noarch 77/188 Verifying : redhat-release-9.2-0.13.el9.x86_64 78/188 Verifying : libsemanage-3.5-1.el9.x86_64 79/188 Verifying : shadow-utils-2:4.9-6.el9.x86_64 80/188 Verifying : libstdc++-11.3.1-4.3.el9.x86_64 81/188 Verifying : libssh-0.10.4-8.el9.x86_64 82/188 Verifying : libgcc-11.3.1-4.3.el9.x86_64 83/188 Verifying : binutils-2.35.2-37.el9.x86_64 84/188 Verifying : glibc-common-2.34-60.el9.x86_64 85/188 Verifying : elfutils-libs-0.188-3.el9.x86_64 86/188 Verifying : elfutils-default-yama-scope-0.188-3.el9.noarch 87/188 Verifying : libarchive-3.5.3-4.el9.x86_64 88/188 Verifying : rpm-libs-4.16.1.3-22.el9.x86_64 89/188 Verifying : glibc-gconv-extra-2.34-60.el9.x86_64 90/188 Verifying : elfutils-debuginfod-client-0.188-3.el9.x86_64 91/188 Verifying : openssl-1:3.0.7-6.el9_2.x86_64 92/188 Verifying : pkgconf-1.7.3-10.el9.x86_64 93/188 Verifying : libssh-config-0.10.4-8.el9.noarch 94/188 Verifying : coreutils-8.32-34.el9.x86_64 95/188 Verifying : zlib-1.2.11-39.el9.x86_64 96/188 Verifying : rpm-4.16.1.3-22.el9.x86_64 97/188 Verifying : coreutils-common-8.32-34.el9.x86_64 98/188 Verifying : libsepol-3.5-1.el9.x86_64 99/188 Verifying : crypto-policies-20221215-1.git9a18988.el9.noarch 100/188 Verifying : binutils-gold-2.35.2-37.el9.x86_64 101/188 Verifying : glibc-minimal-langpack-2.34-60.el9.x86_64 102/188 Verifying : file-libs-5.39-12.el9.x86_64 103/188 Verifying : rpm-build-libs-4.16.1.3-22.el9.x86_64 104/188 Verifying : pkgconf-m4-1.7.3-10.el9.noarch 105/188 Verifying : openssl-libs-1:3.0.7-6.el9_2.x86_64 106/188 Verifying : lua-libs-5.4.4-3.el9.x86_64 107/188 Verifying : elfutils-libelf-0.188-3.el9.x86_64 108/188 Verifying : libpkgconf-1.7.3-10.el9.x86_64 109/188 Verifying : zip-3.0-35.el9.x86_64 110/188 Verifying : file-5.39-12.el9.x86_64 111/188 Verifying : pam-1.5.1-14.el9.x86_64 112/188 Verifying : libfdisk-2.37.4-11.el9_2.x86_64 113/188 Verifying : libcurl-7.76.1-23.el9_2.1.x86_64 114/188 Verifying : libgcrypt-1.10.0-10.el9_2.x86_64 115/188 Verifying : libblkid-2.37.4-11.el9_2.x86_64 116/188 Verifying : curl-7.76.1-23.el9_2.1.x86_64 117/188 Verifying : libmount-2.37.4-11.el9_2.x86_64 118/188 Verifying : libsmartcols-2.37.4-11.el9_2.x86_64 119/188 Verifying : util-linux-core-2.37.4-11.el9_2.x86_64 120/188 Verifying : util-linux-2.37.4-11.el9_2.x86_64 121/188 Verifying : libuuid-2.37.4-11.el9_2.x86_64 122/188 Verifying : lua-srpm-macros-1-6.el9.noarch 123/188 Verifying : rust-srpm-macros-17-4.el9.noarch 124/188 Verifying : ghc-srpm-macros-1.5.0-6.el9.noarch 125/188 Verifying : perl-Pod-Simple-1:3.42-4.el9.noarch 126/188 Verifying : perl-Term-Cap-1.17-460.el9.noarch 127/188 Verifying : perl-Encode-4:3.08-462.el9.x86_64 128/188 Verifying : perl-Time-Local-2:1.300-7.el9.noarch 129/188 Verifying : perl-Pod-Escapes-1:1.07-460.el9.noarch 130/188 Verifying : python-srpm-macros-3.9-52.el9.noarch 131/188 Verifying : perl-podlators-1:4.14-460.el9.noarch 132/188 Verifying : perl-Storable-1:3.21-460.el9.x86_64 133/188 Verifying : perl-srpm-macros-1-41.el9.noarch 134/188 Verifying : perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch 135/188 Verifying : dwz-0.14-3.el9.x86_64 136/188 Verifying : perl-MIME-Base64-3.16-4.el9.x86_64 137/188 Verifying : perl-File-Temp-1:0.231.100-4.el9.noarch 138/188 Verifying : perl-Exporter-5.74-461.el9.noarch 139/188 Verifying : perl-parent-1:0.238-460.el9.noarch 140/188 Verifying : perl-Getopt-Long-1:2.52-4.el9.noarch 141/188 Verifying : perl-Socket-4:2.031-4.el9.x86_64 142/188 Verifying : openblas-srpm-macros-2-11.el9.noarch 143/188 Verifying : perl-Term-ANSIColor-5.01-461.el9.noarch 144/188 Verifying : perl-Scalar-List-Utils-4:1.56-461.el9.x86_64 145/188 Verifying : perl-constant-1.33-461.el9.noarch 146/188 Verifying : perl-File-Path-2.18-4.el9.noarch 147/188 Verifying : efi-srpm-macros-6-2.el9_0.noarch 148/188 Verifying : perl-Text-ParseWords-3.30-460.el9.noarch 149/188 Verifying : perl-HTTP-Tiny-0.076-460.el9.noarch 150/188 Verifying : perl-Pod-Usage-4:2.01-4.el9.noarch 151/188 Verifying : patch-2.7.6-16.el9.x86_64 152/188 Verifying : perl-Pod-Perldoc-3.28.01-461.el9.noarch 153/188 Verifying : fonts-srpm-macros-1:2.0.5-7.el9.1.noarch 154/188 Verifying : ocaml-srpm-macros-6-6.el9.noarch 155/188 Verifying : perl-Carp-1.50-460.el9.noarch 156/188 Verifying : perl-PathTools-3.78-461.el9.x86_64 157/188 Verifying : qt5-srpm-macros-5.15.3-1.el9.noarch 158/188 Verifying : gdb-minimal-10.2-10.el9.x86_64 159/188 Verifying : pyproject-srpm-macros-1.6.2-1.el9.noarch 160/188 Verifying : perl-Class-Struct-0.66-480.el9.noarch 161/188 Verifying : perl-overload-1.31-480.el9.noarch 162/188 Verifying : perl-libs-4:5.32.1-480.el9.x86_64 163/188 Verifying : go-srpm-macros-3.2.0-1.el9.noarch 164/188 Verifying : perl-Errno-1.30-480.el9.x86_64 165/188 Verifying : perl-Symbol-1.08-480.el9.noarch 166/188 Verifying : kernel-srpm-macros-1.0-12.el9.noarch 167/188 Verifying : perl-POSIX-1.94-480.el9.x86_64 168/188 Verifying : perl-File-stat-1.09-480.el9.noarch 169/188 Verifying : redhat-rpm-config-199-1.el9.noarch 170/188 Verifying : perl-overloading-0.02-480.el9.noarch 171/188 Verifying : perl-mro-1.23-480.el9.x86_64 172/188 Verifying : perl-IPC-Open3-1.21-480.el9.noarch 173/188 Verifying : perl-Fcntl-1.13-480.el9.x86_64 174/188 Verifying : perl-File-Basename-2.85-480.el9.noarch 175/188 Verifying : perl-interpreter-4:5.32.1-480.el9.x86_64 176/188 Verifying : perl-SelectSaver-1.02-480.el9.noarch 177/188 Verifying : rpm-build-4.16.1.3-22.el9.x86_64 178/188 Verifying : perl-Getopt-Std-1.12-480.el9.noarch 179/188 Verifying : perl-vars-1.05-480.el9.noarch 180/188 Verifying : perl-IO-1.43-480.el9.x86_64 181/188 Verifying : perl-if-0.60.800-480.el9.noarch 182/188 Verifying : perl-subs-1.03-480.el9.noarch 183/188 Verifying : ansible-srpm-macros-1-8.1.el9.noarch 184/188 Verifying : epel-rpm-macros-9-11.el9.noarch 185/188 Verifying : fpc-srpm-macros-1.3-7.el9.noarch 186/188 Verifying : go-srpm-macros-epel-1-8.el9.noarch 187/188 Verifying : rpmautospec-rpm-macros-0.3.5-1.el9.noarch 188/188 Installed products updated. Installed: alternatives-1.20-2.el9.x86_64 ansible-srpm-macros-1-8.1.el9.noarch audit-libs-3.0.7-103.el9.x86_64 basesystem-11-13.el9.noarch bash-5.1.8-6.el9_1.x86_64 binutils-2.35.2-37.el9.x86_64 binutils-gold-2.35.2-37.el9.x86_64 bzip2-1.0.8-8.el9.x86_64 bzip2-libs-1.0.8-8.el9.x86_64 ca-certificates-2022.2.54-90.2.el9_0.noarch coreutils-8.32-34.el9.x86_64 coreutils-common-8.32-34.el9.x86_64 cpio-2.13-16.el9.x86_64 cracklib-2.9.6-27.el9.x86_64 cracklib-dicts-2.9.6-27.el9.x86_64 crypto-policies-20221215-1.git9a18988.el9.noarch curl-7.76.1-23.el9_2.1.x86_64 cyrus-sasl-lib-2.1.27-21.el9.x86_64 diffutils-3.7-12.el9.x86_64 dwz-0.14-3.el9.x86_64 ed-1.14.2-12.el9.x86_64 efi-srpm-macros-6-2.el9_0.noarch elfutils-0.188-3.el9.x86_64 elfutils-debuginfod-client-0.188-3.el9.x86_64 elfutils-default-yama-scope-0.188-3.el9.noarch elfutils-libelf-0.188-3.el9.x86_64 elfutils-libs-0.188-3.el9.x86_64 epel-rpm-macros-9-11.el9.noarch file-5.39-12.el9.x86_64 file-libs-5.39-12.el9.x86_64 filesystem-3.16-2.el9.x86_64 findutils-1:4.8.0-5.el9.x86_64 fonts-srpm-macros-1:2.0.5-7.el9.1.noarch fpc-srpm-macros-1.3-7.el9.noarch gawk-5.1.0-6.el9.x86_64 gdb-minimal-10.2-10.el9.x86_64 gdbm-libs-1:1.19-4.el9.x86_64 ghc-srpm-macros-1.5.0-6.el9.noarch glibc-2.34-60.el9.x86_64 glibc-common-2.34-60.el9.x86_64 glibc-gconv-extra-2.34-60.el9.x86_64 glibc-minimal-langpack-2.34-60.el9.x86_64 gmp-1:6.2.0-10.el9.x86_64 go-srpm-macros-3.2.0-1.el9.noarch go-srpm-macros-epel-1-8.el9.noarch grep-3.6-5.el9.x86_64 groff-base-1.22.4-10.el9.x86_64 gzip-1.12-1.el9.x86_64 info-6.7-15.el9.x86_64 kernel-srpm-macros-1.0-12.el9.noarch keyutils-libs-1.6.3-1.el9.x86_64 krb5-libs-1.20.1-8.el9.x86_64 libacl-2.3.1-3.el9.x86_64 libarchive-3.5.3-4.el9.x86_64 libattr-2.5.1-3.el9.x86_64 libblkid-2.37.4-11.el9_2.x86_64 libbrotli-1.0.9-6.el9.x86_64 libcap-2.48-8.el9.x86_64 libcap-ng-0.8.2-7.el9.x86_64 libcom_err-1.46.5-3.el9.x86_64 libcurl-7.76.1-23.el9_2.1.x86_64 libdb-5.3.28-53.el9.x86_64 libeconf-0.4.1-2.el9.x86_64 libevent-2.1.12-6.el9.x86_64 libfdisk-2.37.4-11.el9_2.x86_64 libffi-3.4.2-7.el9.x86_64 libgcc-11.3.1-4.3.el9.x86_64 libgcrypt-1.10.0-10.el9_2.x86_64 libgomp-11.3.1-4.3.el9.x86_64 libgpg-error-1.42-5.el9.x86_64 libidn2-2.3.0-7.el9.x86_64 libmount-2.37.4-11.el9_2.x86_64 libnghttp2-1.43.0-5.el9.x86_64 libpkgconf-1.7.3-10.el9.x86_64 libpsl-0.21.1-5.el9.x86_64 libpwquality-1.4.4-8.el9.x86_64 libselinux-3.5-1.el9.x86_64 libsemanage-3.5-1.el9.x86_64 libsepol-3.5-1.el9.x86_64 libsigsegv-2.13-4.el9.x86_64 libsmartcols-2.37.4-11.el9_2.x86_64 libssh-0.10.4-8.el9.x86_64 libssh-config-0.10.4-8.el9.noarch libstdc++-11.3.1-4.3.el9.x86_64 libtasn1-4.16.0-8.el9_1.x86_64 libunistring-0.9.10-15.el9.x86_64 libutempter-1.2.1-6.el9.x86_64 libuuid-2.37.4-11.el9_2.x86_64 libverto-0.3.2-3.el9.x86_64 libxcrypt-4.4.18-3.el9.x86_64 libxml2-2.9.13-3.el9_1.x86_64 libzstd-1.5.1-2.el9.x86_64 lua-libs-5.4.4-3.el9.x86_64 lua-srpm-macros-1-6.el9.noarch lz4-libs-1.9.3-5.el9.x86_64 mpfr-4.1.0-7.el9.x86_64 ncurses-6.2-8.20210508.el9.x86_64 ncurses-base-6.2-8.20210508.el9.noarch ncurses-libs-6.2-8.20210508.el9.x86_64 ocaml-srpm-macros-6-6.el9.noarch openblas-srpm-macros-2-11.el9.noarch openldap-2.6.2-3.el9.x86_64 openssl-1:3.0.7-6.el9_2.x86_64 openssl-libs-1:3.0.7-6.el9_2.x86_64 p11-kit-0.24.1-2.el9.x86_64 p11-kit-trust-0.24.1-2.el9.x86_64 pam-1.5.1-14.el9.x86_64 patch-2.7.6-16.el9.x86_64 pcre-8.44-3.el9.3.x86_64 pcre2-10.40-2.el9.x86_64 pcre2-syntax-10.40-2.el9.noarch perl-Carp-1.50-460.el9.noarch perl-Class-Struct-0.66-480.el9.noarch perl-Encode-4:3.08-462.el9.x86_64 perl-Errno-1.30-480.el9.x86_64 perl-Exporter-5.74-461.el9.noarch perl-Fcntl-1.13-480.el9.x86_64 perl-File-Basename-2.85-480.el9.noarch perl-File-Path-2.18-4.el9.noarch perl-File-Temp-1:0.231.100-4.el9.noarch perl-File-stat-1.09-480.el9.noarch perl-Getopt-Long-1:2.52-4.el9.noarch perl-Getopt-Std-1.12-480.el9.noarch perl-HTTP-Tiny-0.076-460.el9.noarch perl-IO-1.43-480.el9.x86_64 perl-IPC-Open3-1.21-480.el9.noarch perl-MIME-Base64-3.16-4.el9.x86_64 perl-POSIX-1.94-480.el9.x86_64 perl-PathTools-3.78-461.el9.x86_64 perl-Pod-Escapes-1:1.07-460.el9.noarch perl-Pod-Perldoc-3.28.01-461.el9.noarch perl-Pod-Simple-1:3.42-4.el9.noarch perl-Pod-Usage-4:2.01-4.el9.noarch perl-Scalar-List-Utils-4:1.56-461.el9.x86_64 perl-SelectSaver-1.02-480.el9.noarch perl-Socket-4:2.031-4.el9.x86_64 perl-Storable-1:3.21-460.el9.x86_64 perl-Symbol-1.08-480.el9.noarch perl-Term-ANSIColor-5.01-461.el9.noarch perl-Term-Cap-1.17-460.el9.noarch perl-Text-ParseWords-3.30-460.el9.noarch perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch perl-Time-Local-2:1.300-7.el9.noarch perl-constant-1.33-461.el9.noarch perl-if-0.60.800-480.el9.noarch perl-interpreter-4:5.32.1-480.el9.x86_64 perl-libs-4:5.32.1-480.el9.x86_64 perl-mro-1.23-480.el9.x86_64 perl-overload-1.31-480.el9.noarch perl-overloading-0.02-480.el9.noarch perl-parent-1:0.238-460.el9.noarch perl-podlators-1:4.14-460.el9.noarch perl-srpm-macros-1-41.el9.noarch perl-subs-1.03-480.el9.noarch perl-vars-1.05-480.el9.noarch pkgconf-1.7.3-10.el9.x86_64 pkgconf-m4-1.7.3-10.el9.noarch pkgconf-pkg-config-1.7.3-10.el9.x86_64 popt-1.18-8.el9.x86_64 publicsuffix-list-dafsa-20210518-3.el9.noarch pyproject-srpm-macros-1.6.2-1.el9.noarch python-srpm-macros-3.9-52.el9.noarch qt5-srpm-macros-5.15.3-1.el9.noarch readline-8.1-4.el9.x86_64 redhat-release-9.2-0.13.el9.x86_64 redhat-rpm-config-199-1.el9.noarch rpm-4.16.1.3-22.el9.x86_64 rpm-build-4.16.1.3-22.el9.x86_64 rpm-build-libs-4.16.1.3-22.el9.x86_64 rpm-libs-4.16.1.3-22.el9.x86_64 rpmautospec-rpm-macros-0.3.5-1.el9.noarch rust-srpm-macros-17-4.el9.noarch sed-4.8-9.el9.x86_64 setup-2.13.7-9.el9.noarch shadow-utils-2:4.9-6.el9.x86_64 sqlite-libs-3.34.1-6.el9_1.x86_64 systemd-libs-252-13.el9_2.x86_64 tar-2:1.34-6.el9_1.x86_64 tzdata-2023c-1.el9.noarch unzip-6.0-56.el9.x86_64 util-linux-2.37.4-11.el9_2.x86_64 util-linux-core-2.37.4-11.el9_2.x86_64 which-2.21-28.el9.x86_64 xz-5.2.5-8.el9_0.x86_64 xz-libs-5.2.5-8.el9_0.x86_64 zip-3.0-35.el9.x86_64 zlib-1.2.11-39.el9.x86_64 zstd-1.5.1-2.el9.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: pkgconf-pkg-config-1.7.3-10.el9.x86_64 perl-overloading-0.02-480.el9.noarch libgomp-11.3.1-4.3.el9.x86_64 libffi-3.4.2-7.el9.x86_64 gpg-pubkey-fd431d51-4ae0493b basesystem-11-13.el9.noarch p11-kit-trust-0.24.1-2.el9.x86_64 gpg-pubkey-3228467c-613798eb libstdc++-11.3.1-4.3.el9.x86_64 perl-mro-1.23-480.el9.x86_64 openssl-3.0.7-6.el9_2.x86_64 keyutils-libs-1.6.3-1.el9.x86_64 perl-subs-1.03-480.el9.noarch perl-File-Path-2.18-4.el9.noarch go-srpm-macros-epel-1-8.el9.noarch gpg-pubkey-5a6340b3-6229229e perl-Exporter-5.74-461.el9.noarch rust-srpm-macros-17-4.el9.noarch perl-Time-Local-1.300-7.el9.noarch libsmartcols-2.37.4-11.el9_2.x86_64 grep-3.6-5.el9.x86_64 libcurl-7.76.1-23.el9_2.1.x86_64 alternatives-1.20-2.el9.x86_64 elfutils-debuginfod-client-0.188-3.el9.x86_64 rpm-build-4.16.1.3-22.el9.x86_64 perl-constant-1.33-461.el9.noarch libeconf-0.4.1-2.el9.x86_64 perl-Encode-3.08-462.el9.x86_64 p11-kit-0.24.1-2.el9.x86_64 util-linux-core-2.37.4-11.el9_2.x86_64 zlib-1.2.11-39.el9.x86_64 perl-srpm-macros-1-41.el9.noarch libmount-2.37.4-11.el9_2.x86_64 epel-rpm-macros-9-11.el9.noarch publicsuffix-list-dafsa-20210518-3.el9.noarch ansible-srpm-macros-1-8.1.el9.noarch perl-Getopt-Long-2.52-4.el9.noarch perl-Storable-3.21-460.el9.x86_64 curl-7.76.1-23.el9_2.1.x86_64 glibc-minimal-langpack-2.34-60.el9.x86_64 openblas-srpm-macros-2-11.el9.noarch perl-podlators-4.14-460.el9.noarch perl-Text-ParseWords-3.30-460.el9.noarch perl-Term-Cap-1.17-460.el9.noarch libzstd-1.5.1-2.el9.x86_64 perl-Pod-Usage-2.01-4.el9.noarch systemd-libs-252-13.el9_2.x86_64 ncurses-6.2-8.20210508.el9.x86_64 patch-2.7.6-16.el9.x86_64 lz4-libs-1.9.3-5.el9.x86_64 sqlite-libs-3.34.1-6.el9_1.x86_64 libpkgconf-1.7.3-10.el9.x86_64 coreutils-8.32-34.el9.x86_64 setup-2.13.7-9.el9.noarch perl-Class-Struct-0.66-480.el9.noarch perl-interpreter-5.32.1-480.el9.x86_64 ncurses-base-6.2-8.20210508.el9.noarch diffutils-3.7-12.el9.x86_64 libdb-5.3.28-53.el9.x86_64 xz-5.2.5-8.el9_0.x86_64 krb5-libs-1.20.1-8.el9.x86_64 pkgconf-m4-1.7.3-10.el9.noarch perl-overload-1.31-480.el9.noarch binutils-gold-2.35.2-37.el9.x86_64 perl-IPC-Open3-1.21-480.el9.noarch pcre2-10.40-2.el9.x86_64 perl-Errno-1.30-480.el9.x86_64 libgcc-11.3.1-4.3.el9.x86_64 sed-4.8-9.el9.x86_64 perl-IO-1.43-480.el9.x86_64 pcre-8.44-3.el9.3.x86_64 libpwquality-1.4.4-8.el9.x86_64 rpm-libs-4.16.1.3-22.el9.x86_64 shadow-utils-4.9-6.el9.x86_64 perl-Carp-1.50-460.el9.noarch libfdisk-2.37.4-11.el9_2.x86_64 python-srpm-macros-3.9-52.el9.noarch perl-File-stat-1.09-480.el9.noarch tar-1.34-6.el9_1.x86_64 libxml2-2.9.13-3.el9_1.x86_64 crypto-policies-20221215-1.git9a18988.el9.noarch libselinux-3.5-1.el9.x86_64 util-linux-2.37.4-11.el9_2.x86_64 coreutils-common-8.32-34.el9.x86_64 perl-Scalar-List-Utils-1.56-461.el9.x86_64 perl-Pod-Simple-3.42-4.el9.noarch openssl-libs-3.0.7-6.el9_2.x86_64 cracklib-dicts-2.9.6-27.el9.x86_64 rpm-4.16.1.3-22.el9.x86_64 qt5-srpm-macros-5.15.3-1.el9.noarch ghc-srpm-macros-1.5.0-6.el9.noarch openldap-2.6.2-3.el9.x86_64 perl-SelectSaver-1.02-480.el9.noarch perl-libs-5.32.1-480.el9.x86_64 perl-if-0.60.800-480.el9.noarch elfutils-libelf-0.188-3.el9.x86_64 perl-POSIX-1.94-480.el9.x86_64 rpm-build-libs-4.16.1.3-22.el9.x86_64 libsemanage-3.5-1.el9.x86_64 efi-srpm-macros-6-2.el9_0.noarch perl-Text-Tabs+Wrap-2013.0523-460.el9.noarch redhat-rpm-config-199-1.el9.noarch bash-5.1.8-6.el9_1.x86_64 groff-base-1.22.4-10.el9.x86_64 kernel-srpm-macros-1.0-12.el9.noarch libevent-2.1.12-6.el9.x86_64 libpsl-0.21.1-5.el9.x86_64 cpio-2.13-16.el9.x86_64 perl-Getopt-Std-1.12-480.el9.noarch fpc-srpm-macros-1.3-7.el9.noarch libgpg-error-1.42-5.el9.x86_64 ncurses-libs-6.2-8.20210508.el9.x86_64 libcap-ng-0.8.2-7.el9.x86_64 filesystem-3.16-2.el9.x86_64 file-libs-5.39-12.el9.x86_64 libunistring-0.9.10-15.el9.x86_64 perl-Symbol-1.08-480.el9.noarch libssh-config-0.10.4-8.el9.noarch redhat-release-9.2-0.13.el9.x86_64 libsigsegv-2.13-4.el9.x86_64 fonts-srpm-macros-2.0.5-7.el9.1.noarch ed-1.14.2-12.el9.x86_64 gzip-1.12-1.el9.x86_64 elfutils-default-yama-scope-0.188-3.el9.noarch zip-3.0-35.el9.x86_64 perl-Socket-2.031-4.el9.x86_64 perl-Fcntl-1.13-480.el9.x86_64 info-6.7-15.el9.x86_64 libgcrypt-1.10.0-10.el9_2.x86_64 tzdata-2023c-1.el9.noarch perl-MIME-Base64-3.16-4.el9.x86_64 libacl-2.3.1-3.el9.x86_64 libutempter-1.2.1-6.el9.x86_64 perl-parent-0.238-460.el9.noarch glibc-common-2.34-60.el9.x86_64 libtasn1-4.16.0-8.el9_1.x86_64 file-5.39-12.el9.x86_64 perl-Pod-Perldoc-3.28.01-461.el9.noarch libnghttp2-1.43.0-5.el9.x86_64 bzip2-1.0.8-8.el9.x86_64 findutils-4.8.0-5.el9.x86_64 lua-srpm-macros-1-6.el9.noarch which-2.21-28.el9.x86_64 ocaml-srpm-macros-6-6.el9.noarch glibc-gconv-extra-2.34-60.el9.x86_64 libblkid-2.37.4-11.el9_2.x86_64 libssh-0.10.4-8.el9.x86_64 perl-File-Basename-2.85-480.el9.noarch pkgconf-1.7.3-10.el9.x86_64 go-srpm-macros-3.2.0-1.el9.noarch mpfr-4.1.0-7.el9.x86_64 libcom_err-1.46.5-3.el9.x86_64 lua-libs-5.4.4-3.el9.x86_64 perl-PathTools-3.78-461.el9.x86_64 gdb-minimal-10.2-10.el9.x86_64 xz-libs-5.2.5-8.el9_0.x86_64 libverto-0.3.2-3.el9.x86_64 popt-1.18-8.el9.x86_64 gawk-5.1.0-6.el9.x86_64 gdbm-libs-1.19-4.el9.x86_64 pam-1.5.1-14.el9.x86_64 readline-8.1-4.el9.x86_64 pyproject-srpm-macros-1.6.2-1.el9.noarch perl-vars-1.05-480.el9.noarch audit-libs-3.0.7-103.el9.x86_64 perl-Pod-Escapes-1.07-460.el9.noarch perl-Term-ANSIColor-5.01-461.el9.noarch libxcrypt-4.4.18-3.el9.x86_64 pcre2-syntax-10.40-2.el9.noarch libidn2-2.3.0-7.el9.x86_64 bzip2-libs-1.0.8-8.el9.x86_64 elfutils-libs-0.188-3.el9.x86_64 binutils-2.35.2-37.el9.x86_64 perl-File-Temp-0.231.100-4.el9.noarch libuuid-2.37.4-11.el9_2.x86_64 libbrotli-1.0.9-6.el9.x86_64 ca-certificates-2022.2.54-90.2.el9_0.noarch libcap-2.48-8.el9.x86_64 dwz-0.14-3.el9.x86_64 libsepol-3.5-1.el9.x86_64 cyrus-sasl-lib-2.1.27-21.el9.x86_64 cracklib-2.9.6-27.el9.x86_64 zstd-1.5.1-2.el9.x86_64 libarchive-3.5.3-4.el9.x86_64 perl-HTTP-Tiny-0.076-460.el9.noarch libattr-2.5.1-3.el9.x86_64 glibc-2.34-60.el9.x86_64 unzip-6.0-56.el9.x86_64 elfutils-0.188-3.el9.x86_64 gmp-6.2.0-10.el9.x86_64 rpmautospec-rpm-macros-0.3.5-1.el9.noarch Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1622764800 Wrote: /builddir/build/SRPMS/apbs-3.0.0-8.el9.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root/var/log/dnf.rpm.log /var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root/var/log/dnf.librepo.log /var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6bb_agae/apbs/apbs.spec) Config(child) 1 minutes 31 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/apbs-3.0.0-8.el9.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1684327744.476779 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/apbs-3.0.0-8.el9.src.rpm) Config(rhel+epel-9-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1684327744.476779/root. INFO: reusing tmpfs at /var/lib/mock/rhel+epel-9-x86_64-bootstrap-1684327744.476779/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 19 kB/s | 2.1 kB 00:00 Red Hat Enterprise Linux - BaseOS 20 kB/s | 4.1 kB 00:00 Red Hat Enterprise Linux - AppStream 25 kB/s | 4.5 kB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 23 kB/s | 4.5 kB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 530 kB/s | 26 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for apbs-3.0.0-8.el9.src.rpm Start: build setup for apbs-3.0.0-8.el9.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1622764800 Wrote: /builddir/build/SRPMS/apbs-3.0.0-8.el9.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 28 kB/s | 2.1 kB 00:00 Red Hat Enterprise Linux - BaseOS 24 kB/s | 4.1 kB 00:00 Red Hat Enterprise Linux - AppStream 21 kB/s | 4.5 kB 00:00 Red Hat Enterprise Linux - CodeReady Linux Buil 20 kB/s | 4.5 kB 00:00 Extra Packages for Enterprise Linux 9 - x86_64 536 kB/s | 26 kB 00:00 Dependencies resolved. =================================================================================================== Package Arch Version Repository Size =================================================================================================== Installing: cmake x86_64 3.20.2-8.el9 appstream 6.7 M doxygen x86_64 1:1.9.1-11.el9 codeready-builder 4.2 M gcc-c++ x86_64 11.3.1-4.3.el9 appstream 13 M graphviz x86_64 2.44.0-25.el9 appstream 3.3 M make x86_64 1:4.3-7.el9 baseos 542 k maloc-devel x86_64 1.5-27.el9 copr_base 1.3 M python3-devel x86_64 3.9.16-1.el9 appstream 251 k python3-numpy x86_64 1:1.20.1-5.el9 appstream 5.1 M python3-sphinx noarch 1:3.4.3-7.el9 codeready-builder 2.3 M swig x86_64 4.0.2-8.el9 codeready-builder 1.6 M texlive-collection-latexrecommended noarch 9:20200406-25.el9 appstream 12 k zlib-devel x86_64 1.2.11-39.el9 appstream 47 k Installing dependencies: adobe-mappings-cmap noarch 20171205-12.el9 appstream 1.9 M adobe-mappings-cmap-deprecated noarch 20171205-12.el9 appstream 110 k adobe-mappings-pdf noarch 20180407-10.el9 appstream 650 k annobin x86_64 11.05-1.el9 appstream 978 k atk x86_64 2.36.0-5.el9 appstream 296 k avahi-libs x86_64 0.8-12.el9 baseos 71 k cairo x86_64 1.17.4-7.el9 appstream 664 k cairo-gobject x86_64 1.17.4-7.el9 appstream 20 k cmake-data noarch 3.20.2-8.el9 appstream 2.1 M cmake-filesystem x86_64 3.20.2-8.el9 appstream 23 k cmake-rpm-macros noarch 3.20.2-8.el9 appstream 13 k cpp x86_64 11.3.1-4.3.el9 appstream 11 M crypto-policies-scripts noarch 20221215-1.git9a18988.el9 baseos 97 k cups-libs x86_64 1:2.3.3op2-16.el9 baseos 267 k dbus-libs x86_64 1:1.12.20-7.el9_1 baseos 155 k dejavu-sans-fonts noarch 2.37-18.el9 baseos 1.3 M emacs-filesystem noarch 1:27.2-8.el9_2.1 appstream 9.6 k expat x86_64 2.5.0-1.el9 baseos 120 k flexiblas x86_64 3.0.4-8.el9 appstream 34 k flexiblas-netlib x86_64 3.0.4-8.el9 appstream 3.0 M flexiblas-openblas-openmp x86_64 3.0.4-8.el9 appstream 19 k fontconfig x86_64 2.14.0-2.el9_1 appstream 301 k fonts-filesystem noarch 1:2.0.5-7.el9.1 baseos 11 k freetype x86_64 2.10.4-9.el9 baseos 391 k fribidi x86_64 1.0.10-6.el9.2 appstream 89 k gcc x86_64 11.3.1-4.3.el9 appstream 32 M gcc-plugin-annobin x86_64 11.3.1-4.3.el9 appstream 66 k gd x86_64 2.3.2-3.el9 appstream 134 k gdk-pixbuf2 x86_64 2.42.6-3.el9 appstream 496 k gdk-pixbuf2-modules x86_64 2.42.6-3.el9 appstream 93 k ghostscript x86_64 9.54.0-9.el9 appstream 46 k ghostscript-tools-fonts x86_64 9.54.0-9.el9 appstream 14 k ghostscript-tools-printing x86_64 9.54.0-9.el9 appstream 15 k glib2 x86_64 2.68.4-6.el9 baseos 2.6 M glibc-devel x86_64 2.34-60.el9 appstream 54 k glibc-headers x86_64 2.34-60.el9 appstream 556 k gnutls x86_64 3.7.6-20.el9_2 baseos 1.0 M google-droid-sans-fonts noarch 20200215-11.el9.2 appstream 2.7 M graphite2 x86_64 1.3.14-9.el9 baseos 98 k gtk-update-icon-cache x86_64 3.24.31-2.el9 appstream 37 k gtk2 x86_64 2.24.33-8.el9 appstream 3.5 M harfbuzz x86_64 2.7.4-8.el9 baseos 629 k hicolor-icon-theme noarch 0.17-13.el9 appstream 223 k jbig2dec-libs x86_64 0.19-7.el9 appstream 75 k jbigkit-libs x86_64 2.1-23.el9 appstream 56 k kernel-headers x86_64 5.14.0-284.11.1.el9_2 appstream 5.0 M langpacks-core-font-en noarch 3.0-16.el9 appstream 11 k lcms2 x86_64 2.12-3.el9 appstream 169 k libICE x86_64 1.0.10-8.el9 appstream 73 k libSM x86_64 1.2.3-10.el9 appstream 44 k libX11 x86_64 1.7.0-7.el9 appstream 648 k libX11-common noarch 1.7.0-7.el9 appstream 210 k libXau x86_64 1.0.9-8.el9 appstream 34 k libXaw x86_64 1.0.13-19.el9 appstream 200 k libXcomposite x86_64 0.4.5-7.el9 appstream 26 k libXcursor x86_64 1.2.0-7.el9 appstream 33 k libXdamage x86_64 1.1.5-7.el9 appstream 25 k libXext x86_64 1.3.4-8.el9 appstream 42 k libXfixes x86_64 5.0.3-16.el9 appstream 22 k libXft x86_64 2.3.3-8.el9 appstream 64 k libXi x86_64 1.7.10-8.el9 appstream 41 k libXinerama x86_64 1.1.4-10.el9 appstream 17 k libXmu x86_64 1.1.3-8.el9 appstream 78 k libXpm x86_64 3.5.13-8.el9_1 appstream 60 k libXrandr x86_64 1.5.2-8.el9 appstream 30 k libXrender x86_64 0.9.10-16.el9 appstream 30 k libXt x86_64 1.2.0-6.el9 appstream 182 k libdatrie x86_64 0.2.13-4.el9 appstream 34 k libedit x86_64 3.1-37.20210216cvs.el9 baseos 108 k libfontenc x86_64 1.1.3-17.el9 appstream 33 k libgfortran x86_64 11.3.1-4.3.el9 baseos 821 k libgs x86_64 9.54.0-9.el9 appstream 3.2 M libicu x86_64 67.1-9.el9 baseos 9.6 M libijs x86_64 0.35-15.el9 appstream 32 k libjpeg-turbo x86_64 2.0.90-6.el9_1 appstream 178 k libmpc x86_64 1.2.1-4.el9 appstream 65 k libpaper x86_64 1.1.28-4.el9 appstream 49 k libpng x86_64 2:1.6.37-12.el9 baseos 119 k libquadmath x86_64 11.3.1-4.3.el9 baseos 216 k librsvg2 x86_64 2.50.7-1.el9 appstream 3.4 M libstdc++-devel x86_64 11.3.1-4.3.el9 appstream 2.4 M libthai x86_64 0.1.28-8.el9 appstream 211 k libtiff x86_64 4.4.0-7.el9 appstream 200 k libtool-ltdl x86_64 2.4.6-45.el9 appstream 39 k libuv x86_64 1:1.42.0-1.el9 appstream 153 k libwebp x86_64 1.2.0-6.el9_1 appstream 281 k libxcb x86_64 1.13.1-9.el9 appstream 247 k libxcrypt-devel x86_64 4.4.18-3.el9 appstream 32 k llvm-libs x86_64 15.0.7-1.el9 appstream 21 M maloc x86_64 1.5-27.el9 copr_base 97 k mkfontscale x86_64 1.2.1-3.el9 appstream 34 k nettle x86_64 3.8-3.el9_0 baseos 552 k nspr x86_64 4.34.0-18.el9_1 appstream 138 k nss x86_64 3.79.0-18.el9_1 appstream 708 k nss-softokn x86_64 3.79.0-18.el9_1 appstream 386 k nss-softokn-freebl x86_64 3.79.0-18.el9_1 appstream 334 k nss-sysinit x86_64 3.79.0-18.el9_1 appstream 22 k nss-util x86_64 3.79.0-18.el9_1 appstream 91 k openblas x86_64 0.3.21-2.el9 appstream 38 k openblas-openmp x86_64 0.3.21-2.el9 appstream 4.7 M openjpeg2 x86_64 2.4.0-7.el9 appstream 166 k pango x86_64 1.48.7-3.el9 appstream 306 k perl-B x86_64 1.80-480.el9 appstream 185 k perl-Data-Dumper x86_64 2.174-462.el9 appstream 59 k perl-Digest noarch 1.19-4.el9 appstream 29 k perl-Digest-MD5 x86_64 2.58-4.el9 appstream 39 k perl-File-Copy noarch 2.34-480.el9 appstream 22 k perl-File-Find noarch 1.37-480.el9 appstream 27 k perl-FileHandle noarch 2.03-480.el9 appstream 17 k perl-Filter x86_64 2:1.60-4.el9 appstream 95 k perl-Text-Unidecode noarch 1.30-16.el9 appstream 198 k perl-XML-Parser x86_64 2.46-9.el9 appstream 240 k perl-XML-XPath noarch 1.44-11.el9 appstream 92 k perl-encoding x86_64 4:3.00-462.el9 appstream 64 k perl-open noarch 1.12-480.el9 appstream 18 k pixman x86_64 0.40.0-5.el9 appstream 272 k poppler x86_64 21.01.0-14.el9 appstream 1.1 M poppler-data noarch 0.4.9-9.el9 appstream 1.9 M pyproject-rpm-macros noarch 1.6.2-1.el9 codeready-builder 43 k python-rpm-macros noarch 3.9-52.el9 appstream 20 k python3 x86_64 3.9.16-1.el9 baseos 31 k python3-babel noarch 2.9.1-2.el9 appstream 6.0 M python3-chardet noarch 4.0.0-5.el9 baseos 243 k python3-docutils noarch 0.16-6.el9 codeready-builder 1.6 M python3-idna noarch 2.10-7.el9 baseos 101 k python3-imagesize noarch 1.2.0-6.el9 codeready-builder 21 k python3-jinja2 noarch 2.11.3-4.el9 appstream 253 k python3-libs x86_64 3.9.16-1.el9 baseos 7.8 M python3-markupsafe x86_64 1.1.1-12.el9 appstream 39 k python3-packaging noarch 20.9-5.el9 appstream 81 k python3-pip-wheel noarch 21.2.3-6.el9 baseos 1.1 M python3-pygments noarch 2.7.4-4.el9 codeready-builder 2.0 M python3-pyparsing noarch 2.4.7-9.el9 baseos 154 k python3-pysocks noarch 1.7.1-12.el9 baseos 38 k python3-pytz noarch 2021.1-4.el9 appstream 56 k python3-requests noarch 2.25.1-6.el9 baseos 130 k python3-rpm-generators noarch 12-8.el9 appstream 33 k python3-rpm-macros noarch 3.9-52.el9 appstream 16 k python3-setuptools noarch 53.0.0-12.el9 baseos 948 k python3-setuptools-wheel noarch 53.0.0-12.el9 baseos 470 k python3-six noarch 1.15.0-9.el9 baseos 40 k python3-snowballstemmer noarch 1.9.0-10.el9 codeready-builder 168 k python3-sphinx-theme-alabaster noarch 0.7.12-13.el9 codeready-builder 31 k python3-sphinxcontrib-applehelp noarch 1.0.2-5.el9 codeready-builder 52 k python3-sphinxcontrib-devhelp noarch 1.0.2-5.el9 codeready-builder 46 k python3-sphinxcontrib-htmlhelp noarch 1.0.3-6.el9 codeready-builder 55 k python3-sphinxcontrib-jsmath noarch 1.0.1-12.el9 codeready-builder 22 k python3-sphinxcontrib-qthelp noarch 1.0.3-5.el9 codeready-builder 51 k python3-sphinxcontrib-serializinghtml noarch 1.1.4-5.el9 codeready-builder 50 k python3-urllib3 noarch 1.26.5-3.el9 baseos 220 k shared-mime-info x86_64 2.1-5.el9 baseos 561 k teckit x86_64 2.5.9-8.el9 appstream 450 k texlive-ae noarch 9:20200406-25.el9 appstream 130 k texlive-algorithms noarch 9:20200406-25.el9 appstream 303 k texlive-alphalph noarch 9:20200406-25.el9 appstream 356 k texlive-amscls noarch 9:20200406-25.el9 appstream 1.1 M texlive-amsfonts noarch 9:20200406-25.el9 appstream 4.8 M texlive-amsmath noarch 9:20200406-25.el9 appstream 2.3 M texlive-anysize noarch 9:20200406-25.el9 appstream 48 k texlive-atbegshi noarch 9:20200406-25.el9 appstream 405 k texlive-attachfile noarch 9:20200406-25.el9 appstream 353 k texlive-attachfile2 noarch 9:20200406-25.el9 appstream 450 k texlive-atveryend noarch 9:20200406-25.el9 appstream 381 k texlive-auxhook noarch 9:20200406-25.el9 appstream 290 k texlive-avantgar noarch 9:20200406-25.el9 appstream 331 k texlive-babel noarch 9:20200406-25.el9 appstream 1.3 M texlive-babel-english noarch 9:20200406-25.el9 appstream 145 k texlive-babelbib noarch 9:20200406-25.el9 appstream 1.2 M texlive-base noarch 9:20200406-25.el9 appstream 2.3 M texlive-beamer noarch 9:20200406-25.el9 appstream 3.0 M texlive-bera noarch 9:20200406-25.el9 appstream 384 k texlive-beton noarch 9:20200406-25.el9 appstream 73 k texlive-bibtex x86_64 9:20200406-25.el9 appstream 1.7 M texlive-bidi noarch 9:20200406-25.el9 appstream 3.7 M texlive-bigintcalc noarch 9:20200406-25.el9 appstream 461 k texlive-bitset noarch 9:20200406-25.el9 appstream 616 k texlive-bookman noarch 9:20200406-25.el9 appstream 378 k texlive-bookmark noarch 9:20200406-25.el9 appstream 477 k texlive-booktabs noarch 9:20200406-25.el9 appstream 301 k texlive-breakurl noarch 9:20200406-25.el9 appstream 121 k texlive-breqn noarch 9:20200406-25.el9 appstream 1.0 M texlive-caption noarch 9:20200406-25.el9 appstream 1.5 M texlive-carlisle noarch 9:20200406-25.el9 appstream 92 k texlive-catchfile noarch 9:20200406-25.el9 appstream 303 k texlive-changepage noarch 9:20200406-25.el9 appstream 284 k texlive-charter noarch 9:20200406-25.el9 appstream 212 k texlive-chngcntr noarch 9:20200406-25.el9 appstream 242 k texlive-cite noarch 9:20200406-25.el9 appstream 247 k texlive-cm noarch 9:20200406-25.el9 appstream 339 k texlive-cm-super noarch 9:20200406-25.el9 appstream 62 M texlive-cmap noarch 9:20200406-25.el9 appstream 23 k texlive-cmextra noarch 9:20200406-25.el9 appstream 51 k texlive-collection-basic noarch 9:20200406-25.el9 appstream 11 k texlive-collection-fontsrecommended noarch 9:20200406-25.el9 appstream 11 k texlive-collection-latex noarch 9:20200406-25.el9 appstream 11 k texlive-colorprofiles noarch 9:20200406-25.el9 appstream 143 k texlive-colortbl noarch 9:20200406-25.el9 appstream 590 k texlive-courier noarch 9:20200406-25.el9 appstream 532 k texlive-crop noarch 9:20200406-25.el9 appstream 334 k texlive-csquotes noarch 9:20200406-25.el9 appstream 339 k texlive-ctable noarch 9:20200406-25.el9 appstream 705 k texlive-currfile noarch 9:20200406-25.el9 appstream 185 k texlive-dvipdfmx x86_64 9:20200406-25.el9 appstream 3.0 M texlive-dvips x86_64 9:20200406-25.el9 appstream 1.1 M texlive-ec noarch 9:20200406-25.el9 appstream 791 k texlive-enctex noarch 9:20200406-25.el9 appstream 304 k texlive-enumitem noarch 9:20200406-25.el9 appstream 184 k texlive-epstopdf-pkg noarch 9:20200406-25.el9 appstream 360 k texlive-eso-pic noarch 9:20200406-25.el9 appstream 262 k texlive-etex noarch 9:20200406-25.el9 appstream 206 k texlive-etex-pkg noarch 9:20200406-25.el9 appstream 18 k texlive-etexcmds noarch 9:20200406-25.el9 appstream 306 k texlive-etoolbox noarch 9:20200406-25.el9 appstream 253 k texlive-euenc noarch 9:20200406-25.el9 appstream 162 k texlive-euler noarch 9:20200406-25.el9 appstream 246 k texlive-euro noarch 9:20200406-25.el9 appstream 211 k texlive-eurosym noarch 9:20200406-25.el9 appstream 433 k texlive-extsizes noarch 9:20200406-25.el9 appstream 218 k texlive-fancybox noarch 9:20200406-25.el9 appstream 291 k texlive-fancyhdr noarch 9:20200406-25.el9 appstream 779 k texlive-fancyref noarch 9:20200406-25.el9 appstream 118 k texlive-fancyvrb noarch 9:20200406-25.el9 appstream 155 k texlive-filecontents noarch 9:20200406-25.el9 appstream 133 k texlive-filehook noarch 9:20200406-25.el9 appstream 310 k texlive-finstrut noarch 9:20200406-25.el9 appstream 187 k texlive-fix2col noarch 9:20200406-25.el9 appstream 221 k texlive-float noarch 9:20200406-25.el9 appstream 125 k texlive-fontspec noarch 9:20200406-25.el9 appstream 1.2 M texlive-footmisc noarch 9:20200406-25.el9 appstream 334 k texlive-footnotehyper noarch 9:20200406-25.el9 appstream 92 k texlive-fp noarch 9:20200406-25.el9 appstream 249 k texlive-fpl noarch 9:20200406-25.el9 appstream 311 k texlive-geometry noarch 9:20200406-25.el9 appstream 860 k texlive-gettitlestring noarch 9:20200406-25.el9 appstream 323 k texlive-glyphlist noarch 9:20200406-25.el9 appstream 38 k texlive-graphics noarch 9:20200406-25.el9 appstream 1.9 M texlive-graphics-cfg noarch 9:20200406-25.el9 appstream 15 k texlive-graphics-def noarch 9:20200406-25.el9 appstream 24 k texlive-grfext noarch 9:20200406-25.el9 appstream 313 k texlive-grffile noarch 9:20200406-25.el9 appstream 356 k texlive-helvetic noarch 9:20200406-25.el9 appstream 674 k texlive-hobsub noarch 9:20200406-25.el9 appstream 74 k texlive-hologo noarch 9:20200406-25.el9 appstream 559 k texlive-hycolor noarch 9:20200406-25.el9 appstream 380 k texlive-hyperref noarch 9:20200406-25.el9 appstream 3.2 M texlive-hyph-utf8 noarch 9:20200406-25.el9 appstream 307 k texlive-hyphen-base noarch 9:20200406-25.el9 appstream 36 k texlive-hyphenex noarch 9:20200406-25.el9 appstream 20 k texlive-ifmtarg noarch 9:20200406-25.el9 appstream 49 k texlive-ifplatform noarch 9:20200406-25.el9 appstream 162 k texlive-iftex noarch 9:20200406-25.el9 appstream 229 k texlive-index noarch 9:20200406-25.el9 appstream 180 k texlive-infwarerr noarch 9:20200406-25.el9 appstream 291 k texlive-intcalc noarch 9:20200406-25.el9 appstream 428 k texlive-jknapltx noarch 9:20200406-25.el9 appstream 31 k texlive-kastrup noarch 9:20200406-25.el9 appstream 148 k texlive-knuth-lib noarch 9:20200406-25.el9 appstream 54 k texlive-knuth-local noarch 9:20200406-25.el9 appstream 47 k texlive-koma-script noarch 9:20200406-25.el9 appstream 6.0 M texlive-kpathsea x86_64 9:20200406-25.el9 appstream 1.1 M texlive-kvdefinekeys noarch 9:20200406-25.el9 appstream 302 k texlive-kvoptions noarch 9:20200406-25.el9 appstream 477 k texlive-kvsetkeys noarch 9:20200406-25.el9 appstream 376 k texlive-l3backend noarch 9:20200406-25.el9 appstream 812 k texlive-l3experimental noarch 9:20200406-25.el9 appstream 3.1 M texlive-l3kernel noarch 9:20200406-25.el9 appstream 10 M texlive-l3packages noarch 9:20200406-25.el9 appstream 1.7 M texlive-latex noarch 9:20200406-25.el9 appstream 22 M texlive-latex-fonts noarch 9:20200406-25.el9 appstream 52 k texlive-latexbug noarch 9:20200406-25.el9 appstream 198 k texlive-latexconfig noarch 9:20200406-25.el9 appstream 17 k texlive-letltxmacro noarch 9:20200406-25.el9 appstream 296 k texlive-lib x86_64 9:20200406-25.el9 appstream 483 k texlive-lineno noarch 9:20200406-25.el9 appstream 711 k texlive-listings noarch 9:20200406-25.el9 appstream 2.2 M texlive-lm noarch 9:20200406-25.el9 appstream 14 M texlive-lm-math noarch 9:20200406-25.el9 appstream 539 k texlive-ltabptch noarch 9:20200406-25.el9 appstream 276 k texlive-ltxcmds noarch 9:20200406-25.el9 appstream 396 k texlive-ltxmisc noarch 9:20200406-25.el9 appstream 31 k texlive-lua-alt-getopt noarch 9:20200406-25.el9 appstream 19 k texlive-luahbtex x86_64 9:20200406-25.el9 appstream 1.9 M texlive-lualatex-math noarch 9:20200406-25.el9 appstream 209 k texlive-lualibs noarch 9:20200406-25.el9 appstream 232 k texlive-luaotfload noarch 9:20200406-25.el9 appstream 1.2 M texlive-luatex x86_64 9:20200406-25.el9 appstream 3.7 M texlive-luatexbase noarch 9:20200406-25.el9 appstream 275 k texlive-lwarp noarch 9:20200406-25.el9 appstream 3.3 M texlive-makecmds noarch 9:20200406-25.el9 appstream 127 k texlive-makeindex x86_64 9:20200406-25.el9 appstream 439 k texlive-manfnt-font noarch 9:20200406-25.el9 appstream 38 k texlive-marginnote noarch 9:20200406-25.el9 appstream 323 k texlive-marvosym noarch 9:20200406-25.el9 appstream 566 k texlive-mathpazo noarch 9:20200406-25.el9 appstream 453 k texlive-mathspec noarch 9:20200406-25.el9 appstream 190 k texlive-mathtools noarch 9:20200406-25.el9 appstream 989 k texlive-mdwtools noarch 9:20200406-25.el9 appstream 1.6 M texlive-memoir noarch 9:20200406-25.el9 appstream 3.0 M texlive-metafont x86_64 9:20200406-25.el9 appstream 274 k texlive-metalogo noarch 9:20200406-25.el9 appstream 92 k texlive-mflogo noarch 9:20200406-25.el9 appstream 249 k texlive-mflogo-font noarch 9:20200406-25.el9 appstream 38 k texlive-mfnfss noarch 9:20200406-25.el9 appstream 453 k texlive-mfware x86_64 9:20200406-25.el9 appstream 113 k texlive-microtype noarch 9:20200406-25.el9 appstream 1.7 M texlive-minitoc noarch 9:20200406-25.el9 appstream 129 k texlive-mnsymbol noarch 9:20200406-25.el9 appstream 4.7 M texlive-modes noarch 9:20200406-25.el9 appstream 308 k texlive-mparhack noarch 9:20200406-25.el9 appstream 73 k texlive-mptopdf noarch 9:20200406-25.el9 appstream 54 k texlive-ms noarch 9:20200406-25.el9 appstream 575 k texlive-multido noarch 9:20200406-25.el9 appstream 122 k texlive-natbib noarch 9:20200406-25.el9 appstream 442 k texlive-ncntrsbk noarch 9:20200406-25.el9 appstream 373 k texlive-newfloat noarch 9:20200406-25.el9 appstream 116 k texlive-notoccite noarch 9:20200406-25.el9 appstream 234 k texlive-ntgclass noarch 9:20200406-25.el9 appstream 1.7 M texlive-oberdiek noarch 9:20200406-25.el9 appstream 8.6 M texlive-palatino noarch 9:20200406-25.el9 appstream 440 k texlive-paralist noarch 9:20200406-25.el9 appstream 219 k texlive-parallel noarch 9:20200406-25.el9 appstream 131 k texlive-parskip noarch 9:20200406-25.el9 appstream 320 k texlive-pdfcolmk noarch 9:20200406-25.el9 appstream 14 k texlive-pdfescape noarch 9:20200406-25.el9 appstream 348 k texlive-pdflscape noarch 9:20200406-25.el9 appstream 303 k texlive-pdfpages noarch 9:20200406-25.el9 appstream 342 k texlive-pdftex x86_64 9:20200406-25.el9 appstream 2.0 M texlive-pdftexcmds noarch 9:20200406-25.el9 appstream 387 k texlive-pgf noarch 9:20200406-25.el9 appstream 11 M texlive-placeins noarch 9:20200406-25.el9 appstream 264 k texlive-plain noarch 9:20200406-25.el9 appstream 99 k texlive-polyglossia noarch 9:20200406-25.el9 appstream 844 k texlive-psfrag noarch 9:20200406-25.el9 appstream 86 k texlive-pslatex noarch 9:20200406-25.el9 appstream 22 k texlive-psnfss noarch 9:20200406-25.el9 appstream 321 k texlive-pspicture noarch 9:20200406-25.el9 appstream 57 k texlive-pst-3d noarch 9:20200406-25.el9 appstream 117 k texlive-pst-arrow noarch 9:20200406-25.el9 appstream 145 k texlive-pst-coil noarch 9:20200406-25.el9 appstream 266 k texlive-pst-eps noarch 9:20200406-25.el9 appstream 96 k texlive-pst-fill noarch 9:20200406-25.el9 appstream 1.1 M texlive-pst-grad noarch 9:20200406-25.el9 appstream 230 k texlive-pst-math noarch 9:20200406-25.el9 appstream 194 k texlive-pst-node noarch 9:20200406-25.el9 appstream 454 k texlive-pst-plot noarch 9:20200406-25.el9 appstream 1.1 M texlive-pst-text noarch 9:20200406-25.el9 appstream 186 k texlive-pst-tools noarch 9:20200406-25.el9 appstream 118 k texlive-pst-tree noarch 9:20200406-25.el9 appstream 170 k texlive-pstricks noarch 9:20200406-25.el9 appstream 7.2 M texlive-pstricks-add noarch 9:20200406-25.el9 appstream 4.6 M texlive-pxfonts noarch 9:20200406-25.el9 appstream 943 k texlive-qstest noarch 9:20200406-25.el9 appstream 232 k texlive-ragged2e noarch 9:20200406-25.el9 appstream 659 k texlive-rcs noarch 9:20200406-25.el9 appstream 145 k texlive-realscripts noarch 9:20200406-25.el9 appstream 116 k texlive-refcount noarch 9:20200406-25.el9 appstream 331 k texlive-rerunfilecheck noarch 9:20200406-25.el9 appstream 320 k texlive-rsfs noarch 9:20200406-25.el9 appstream 78 k texlive-sansmath noarch 9:20200406-25.el9 appstream 193 k texlive-sansmathaccent noarch 9:20200406-25.el9 appstream 185 k texlive-sauerj noarch 9:20200406-25.el9 appstream 551 k texlive-section noarch 9:20200406-25.el9 appstream 366 k texlive-seminar noarch 9:20200406-25.el9 appstream 389 k texlive-sepnum noarch 9:20200406-25.el9 appstream 359 k texlive-setspace noarch 9:20200406-25.el9 appstream 20 k texlive-showexpl noarch 9:20200406-25.el9 appstream 603 k texlive-soul noarch 9:20200406-25.el9 appstream 320 k texlive-stringenc noarch 9:20200406-25.el9 appstream 699 k texlive-subfig noarch 9:20200406-25.el9 appstream 469 k texlive-symbol noarch 9:20200406-25.el9 appstream 55 k texlive-tex x86_64 9:20200406-25.el9 appstream 214 k texlive-tex-gyre noarch 9:20200406-25.el9 appstream 14 M texlive-tex-gyre-math noarch 9:20200406-25.el9 appstream 1.8 M texlive-tex-ini-files noarch 9:20200406-25.el9 appstream 19 k texlive-texlive-common-doc noarch 9:20200406-25.el9 appstream 450 k texlive-texlive-docindex noarch 9:20200406-25.el9 appstream 184 k texlive-texlive-en noarch 9:20200406-25.el9 appstream 1.9 M texlive-texlive-msg-translations noarch 9:20200406-25.el9 appstream 156 k texlive-texlive-scripts noarch 9:20200406-25.el9 appstream 120 k texlive-texlive.infra noarch 9:20200406-25.el9 appstream 290 k texlive-textcase noarch 9:20200406-25.el9 appstream 202 k texlive-thumbpdf noarch 9:20200406-25.el9 appstream 42 k texlive-times noarch 9:20200406-25.el9 appstream 380 k texlive-tipa noarch 9:20200406-25.el9 appstream 5.1 M texlive-titlesec noarch 9:20200406-25.el9 appstream 671 k texlive-tools noarch 9:20200406-25.el9 appstream 5.0 M texlive-translator noarch 9:20200406-25.el9 appstream 285 k texlive-txfonts noarch 9:20200406-25.el9 appstream 1.4 M texlive-typehtml noarch 9:20200406-25.el9 appstream 171 k texlive-ucharcat noarch 9:20200406-25.el9 appstream 168 k texlive-ucs noarch 9:20200406-25.el9 appstream 1.3 M texlive-underscore noarch 9:20200406-25.el9 appstream 255 k texlive-unicode-data noarch 9:20200406-25.el9 appstream 358 k texlive-unicode-math noarch 9:20200406-25.el9 appstream 1.7 M texlive-uniquecounter noarch 9:20200406-25.el9 appstream 296 k texlive-updmap-map noarch 9:20200406-25.el9 appstream 334 k texlive-url noarch 9:20200406-25.el9 appstream 277 k texlive-utopia noarch 9:20200406-25.el9 appstream 247 k texlive-varwidth noarch 9:20200406-25.el9 appstream 42 k texlive-wasy noarch 9:20200406-25.el9 appstream 342 k texlive-wasy-type1 noarch 9:20200406-25.el9 appstream 272 k texlive-wasysym noarch 9:20200406-25.el9 appstream 175 k texlive-xcolor noarch 9:20200406-25.el9 appstream 689 k texlive-xdvi x86_64 9:20200406-25.el9 appstream 361 k texlive-xetex x86_64 9:20200406-25.el9 appstream 2.2 M texlive-xetexconfig noarch 9:20200406-25.el9 appstream 12 k texlive-xifthen noarch 9:20200406-25.el9 appstream 483 k texlive-xkeyval noarch 9:20200406-25.el9 appstream 411 k texlive-xltxtra noarch 9:20200406-25.el9 appstream 114 k texlive-xunicode noarch 9:20200406-25.el9 appstream 40 k texlive-zapfchan noarch 9:20200406-25.el9 appstream 108 k texlive-zapfding noarch 9:20200406-25.el9 appstream 64 k texlive-zref noarch 9:20200406-25.el9 appstream 666 k urw-base35-bookman-fonts noarch 20200910-6.el9 appstream 850 k urw-base35-c059-fonts noarch 20200910-6.el9 appstream 878 k urw-base35-d050000l-fonts noarch 20200910-6.el9 appstream 78 k urw-base35-fonts noarch 20200910-6.el9 appstream 11 k urw-base35-fonts-common noarch 20200910-6.el9 appstream 23 k urw-base35-gothic-fonts noarch 20200910-6.el9 appstream 647 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-6.el9 appstream 799 k urw-base35-nimbus-roman-fonts noarch 20200910-6.el9 appstream 860 k urw-base35-nimbus-sans-fonts noarch 20200910-6.el9 appstream 1.3 M urw-base35-p052-fonts noarch 20200910-6.el9 appstream 977 k urw-base35-standard-symbols-ps-fonts noarch 20200910-6.el9 appstream 44 k urw-base35-z003-fonts noarch 20200910-6.el9 appstream 278 k vim-filesystem noarch 2:8.2.2637-20.el9_1 baseos 22 k xml-common noarch 0.6.3-58.el9 appstream 36 k xorg-x11-fonts-ISO8859-1-100dpi noarch 7.5-33.el9 appstream 1.1 M zziplib x86_64 0.13.71-9.el9 appstream 94 k Transaction Summary =================================================================================================== Install 441 Packages Total download size: 504 M Installed size: 1.2 G Downloading Packages: (1/441): maloc-1.5-27.el9.x86_64.rpm 839 kB/s | 97 kB 00:00 (2/441): maloc-devel-1.5-27.el9.x86_64.rpm 5.9 MB/s | 1.3 MB 00:00 (3/441): graphite2-1.3.14-9.el9.x86_64.rpm 462 kB/s | 98 kB 00:00 (4/441): python3-idna-2.10-7.el9.noarch.rpm 474 kB/s | 101 kB 00:00 (5/441): python3-pyparsing-2.4.7-9.el9.noarch.r 1.2 MB/s | 154 kB 00:00 (6/441): python3-urllib3-1.26.5-3.el9.noarch.rp 393 kB/s | 220 kB 00:00 (7/441): fonts-filesystem-2.0.5-7.el9.1.noarch. 104 kB/s | 11 kB 00:00 (8/441): make-4.3-7.el9.x86_64.rpm 3.2 MB/s | 542 kB 00:00 (9/441): python3-requests-2.25.1-6.el9.noarch.r 1.1 MB/s | 130 kB 00:00 (10/441): dejavu-sans-fonts-2.37-18.el9.noarch. 7.5 MB/s | 1.3 MB 00:00 (11/441): libpng-1.6.37-12.el9.x86_64.rpm 624 kB/s | 119 kB 00:00 (12/441): python3-chardet-4.0.0-5.el9.noarch.rp 2.2 MB/s | 243 kB 00:00 (13/441): python3-pysocks-1.7.1-12.el9.noarch.r 364 kB/s | 38 kB 00:00 (14/441): libedit-3.1-37.20210216cvs.el9.x86_64 615 kB/s | 108 kB 00:00 (15/441): avahi-libs-0.8-12.el9.x86_64.rpm 673 kB/s | 71 kB 00:00 (16/441): python3-pip-wheel-21.2.3-6.el9.noarch 5.7 MB/s | 1.1 MB 00:00 (17/441): nettle-3.8-3.el9_0.x86_64.rpm 2.8 MB/s | 552 kB 00:00 (18/441): cups-libs-2.3.3op2-16.el9.x86_64.rpm 2.1 MB/s | 267 kB 00:00 (19/441): python3-six-1.15.0-9.el9.noarch.rpm 207 kB/s | 40 kB 00:00 (20/441): libicu-67.1-9.el9.x86_64.rpm 18 MB/s | 9.6 MB 00:00 (21/441): dbus-libs-1.12.20-7.el9_1.x86_64.rpm 1.4 MB/s | 155 kB 00:00 (22/441): freetype-2.10.4-9.el9.x86_64.rpm 2.7 MB/s | 391 kB 00:00 (23/441): vim-filesystem-8.2.2637-20.el9_1.noar 206 kB/s | 22 kB 00:00 (24/441): python3-setuptools-wheel-53.0.0-12.el 3.7 MB/s | 470 kB 00:00 (25/441): harfbuzz-2.7.4-8.el9.x86_64.rpm 3.8 MB/s | 629 kB 00:00 (26/441): python3-setuptools-53.0.0-12.el9.noar 5.5 MB/s | 948 kB 00:00 (27/441): expat-2.5.0-1.el9.x86_64.rpm 871 kB/s | 120 kB 00:00 (28/441): crypto-policies-scripts-20221215-1.gi 920 kB/s | 97 kB 00:00 (29/441): python3-libs-3.9.16-1.el9.x86_64.rpm 34 MB/s | 7.8 MB 00:00 (30/441): gnutls-3.7.6-20.el9_2.x86_64.rpm 6.6 MB/s | 1.0 MB 00:00 (31/441): shared-mime-info-2.1-5.el9.x86_64.rpm 1.3 MB/s | 561 kB 00:00 (32/441): python3-3.9.16-1.el9.x86_64.rpm 265 kB/s | 31 kB 00:00 (33/441): libgfortran-11.3.1-4.3.el9.x86_64.rpm 5.3 MB/s | 821 kB 00:00 (34/441): libquadmath-11.3.1-4.3.el9.x86_64.rpm 906 kB/s | 216 kB 00:00 (35/441): glib2-2.68.4-6.el9.x86_64.rpm 9.5 MB/s | 2.6 MB 00:00 (36/441): texlive-mathspec-20200406-25.el9.noar 176 kB/s | 190 kB 00:01 (37/441): texlive-atveryend-20200406-25.el9.noa 206 kB/s | 381 kB 00:01 (38/441): texlive-pdfpages-20200406-25.el9.noar 162 kB/s | 342 kB 00:02 (39/441): perl-Data-Dumper-2.174-462.el9.x86_64 211 kB/s | 59 kB 00:00 (40/441): texlive-lwarp-20200406-25.el9.noarch. 2.2 MB/s | 3.3 MB 00:01 (41/441): texlive-l3kernel-20200406-25.el9.noar 4.6 MB/s | 10 MB 00:02 (42/441): texlive-pdfescape-20200406-25.el9.noa 123 kB/s | 348 kB 00:02 (43/441): texlive-pst-eps-20200406-25.el9.noarc 48 kB/s | 96 kB 00:02 (44/441): texlive-texlive-scripts-20200406-25.e 52 kB/s | 120 kB 00:02 (45/441): texlive-makeindex-20200406-25.el9.x86 192 kB/s | 439 kB 00:02 (46/441): texlive-underscore-20200406-25.el9.no 143 kB/s | 255 kB 00:01 (47/441): perl-Filter-1.60-4.el9.x86_64.rpm 830 kB/s | 95 kB 00:00 (48/441): texlive-caption-20200406-25.el9.noarc 1.0 MB/s | 1.5 MB 00:01 (49/441): texlive-intcalc-20200406-25.el9.noarc 280 kB/s | 428 kB 00:01 (50/441): libXt-1.2.0-6.el9.x86_64.rpm 1.2 MB/s | 182 kB 00:00 (51/441): perl-Digest-MD5-2.58-4.el9.x86_64.rpm 109 kB/s | 39 kB 00:00 (52/441): texlive-mparhack-20200406-25.el9.noar 102 kB/s | 73 kB 00:00 (53/441): texlive-filehook-20200406-25.el9.noar 477 kB/s | 310 kB 00:00 (54/441): texlive-kpathsea-20200406-25.el9.x86_ 816 kB/s | 1.1 MB 00:01 (55/441): texlive-lualatex-math-20200406-25.el9 116 kB/s | 209 kB 00:01 (56/441): texlive-zapfding-20200406-25.el9.noar 38 kB/s | 64 kB 00:01 (57/441): texlive-pst-plot-20200406-25.el9.noar 547 kB/s | 1.1 MB 00:02 (58/441): flexiblas-openblas-openmp-3.0.4-8.el9 120 kB/s | 19 kB 00:00 (59/441): texlive-ncntrsbk-20200406-25.el9.noar 256 kB/s | 373 kB 00:01 (60/441): texlive-algorithms-20200406-25.el9.no 186 kB/s | 303 kB 00:01 (61/441): texlive-realscripts-20200406-25.el9.n 74 kB/s | 116 kB 00:01 (62/441): texlive-fancyvrb-20200406-25.el9.noar 97 kB/s | 155 kB 00:01 (63/441): texlive-pst-arrow-20200406-25.el9.noa 161 kB/s | 145 kB 00:00 (64/441): texlive-letltxmacro-20200406-25.el9.n 226 kB/s | 296 kB 00:01 (65/441): texlive-sepnum-20200406-25.el9.noarch 213 kB/s | 359 kB 00:01 (66/441): texlive-ec-20200406-25.el9.noarch.rpm 696 kB/s | 791 kB 00:01 (67/441): texlive-breakurl-20200406-25.el9.noar 56 kB/s | 121 kB 00:02 (68/441): texlive-pxfonts-20200406-25.el9.noarc 928 kB/s | 943 kB 00:01 (69/441): urw-base35-d050000l-fonts-20200910-6. 741 kB/s | 78 kB 00:00 (70/441): libXext-1.3.4-8.el9.x86_64.rpm 393 kB/s | 42 kB 00:00 (71/441): texlive-texlive-msg-translations-2020 95 kB/s | 156 kB 00:01 (72/441): texlive-collection-basic-20200406-25. 6.9 kB/s | 11 kB 00:01 (73/441): texlive-bitset-20200406-25.el9.noarch 408 kB/s | 616 kB 00:01 (74/441): texlive-cmap-20200406-25.el9.noarch.r 30 kB/s | 23 kB 00:00 (75/441): texlive-sauerj-20200406-25.el9.noarch 324 kB/s | 551 kB 00:01 (76/441): libXcursor-1.2.0-7.el9.x86_64.rpm 238 kB/s | 33 kB 00:00 (77/441): xorg-x11-fonts-ISO8859-1-100dpi-7.5-3 4.8 MB/s | 1.1 MB 00:00 (78/441): texlive-mathpazo-20200406-25.el9.noar 463 kB/s | 453 kB 00:00 (79/441): perl-XML-Parser-2.46-9.el9.x86_64.rpm 1.1 MB/s | 240 kB 00:00 (80/441): texlive-xcolor-20200406-25.el9.noarch 287 kB/s | 689 kB 00:02 (81/441): texlive-listings-20200406-25.el9.noar 1.5 MB/s | 2.2 MB 00:01 (82/441): texlive-pdftex-20200406-25.el9.x86_64 884 kB/s | 2.0 MB 00:02 (83/441): texlive-chngcntr-20200406-25.el9.noar 209 kB/s | 242 kB 00:01 (84/441): texlive-luatexbase-20200406-25.el9.no 210 kB/s | 275 kB 00:01 (85/441): urw-base35-z003-fonts-20200910-6.el9. 2.6 MB/s | 278 kB 00:00 (86/441): libthai-0.1.28-8.el9.x86_64.rpm 1.9 MB/s | 211 kB 00:00 (87/441): gtk-update-icon-cache-3.24.31-2.el9.x 253 kB/s | 37 kB 00:00 (88/441): texlive-cite-20200406-25.el9.noarch.r 161 kB/s | 247 kB 00:01 (89/441): texlive-mathtools-20200406-25.el9.noa 604 kB/s | 989 kB 00:01 (90/441): libuv-1.42.0-1.el9.x86_64.rpm 1.5 MB/s | 153 kB 00:00 (91/441): texlive-makecmds-20200406-25.el9.noar 85 kB/s | 127 kB 00:01 (92/441): libXrandr-1.5.2-8.el9.x86_64.rpm 245 kB/s | 30 kB 00:00 (93/441): texlive-mnsymbol-20200406-25.el9.noar 3.8 MB/s | 4.7 MB 00:01 (94/441): texlive-marvosym-20200406-25.el9.noar 606 kB/s | 566 kB 00:00 (95/441): texlive-marginnote-20200406-25.el9.no 150 kB/s | 323 kB 00:02 (96/441): texlive-grffile-20200406-25.el9.noarc 226 kB/s | 356 kB 00:01 (97/441): texlive-varwidth-20200406-25.el9.noar 27 kB/s | 42 kB 00:01 (98/441): texlive-kvoptions-20200406-25.el9.noa 229 kB/s | 477 kB 00:02 (99/441): texlive-courier-20200406-25.el9.noarc 383 kB/s | 532 kB 00:01 (100/441): pixman-0.40.0-5.el9.x86_64.rpm 3.8 MB/s | 272 kB 00:00 (101/441): texlive-fancybox-20200406-25.el9.noa 199 kB/s | 291 kB 00:01 (102/441): texlive-showexpl-20200406-25.el9.noa 507 kB/s | 603 kB 00:01 (103/441): mkfontscale-1.2.1-3.el9.x86_64.rpm 257 kB/s | 34 kB 00:00 (104/441): texlive-koma-script-20200406-25.el9. 4.6 MB/s | 6.0 MB 00:01 (105/441): texlive-finstrut-20200406-25.el9.noa 84 kB/s | 187 kB 00:02 (106/441): texlive-breqn-20200406-25.el9.noarch 713 kB/s | 1.0 MB 00:01 (107/441): texlive-footmisc-20200406-25.el9.noa 356 kB/s | 334 kB 00:00 (108/441): texlive-l3backend-20200406-25.el9.no 479 kB/s | 812 kB 00:01 (109/441): libX11-common-1.7.0-7.el9.noarch.rpm 2.9 MB/s | 210 kB 00:00 (110/441): texlive-graphics-cfg-20200406-25.el9 9.4 kB/s | 15 kB 00:01 (111/441): texlive-pst-tools-20200406-25.el9.no 87 kB/s | 118 kB 00:01 (112/441): texlive-graphics-20200406-25.el9.noa 1.2 MB/s | 1.9 MB 00:01 (113/441): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: texlive-base-9:20200406-25.el9.noarch 1/1 Preparing : 1/1 Running scriptlet: texlive-base-9:20200406-25.el9.noarch 1/441 Installing : texlive-base-9:20200406-25.el9.noarch 1/441 Installing : texlive-lib-9:20200406-25.el9.x86_64 2/441 Installing : libpng-2:1.6.37-12.el9.x86_64 3/441 Installing : nspr-4.34.0-18.el9_1.x86_64 4/441 Installing : libjpeg-turbo-2.0.90-6.el9_1.x86_64 5/441 Installing : expat-2.5.0-1.el9.x86_64 6/441 Installing : nss-util-3.79.0-18.el9_1.x86_64 7/441 Installing : fonts-filesystem-1:2.0.5-7.el9.1.noarch 8/441 Installing : urw-base35-fonts-common-20200910-6.el9.noarch 9/441 Installing : perl-B-1.80-480.el9.x86_64 10/441 Installing : perl-Data-Dumper-2.174-462.el9.x86_64 11/441 Installing : libwebp-1.2.0-6.el9_1.x86_64 12/441 Installing : python-rpm-macros-3.9-52.el9.noarch 13/441 Installing : libmpc-1.2.1-4.el9.x86_64 14/441 Installing : python3-rpm-macros-3.9-52.el9.noarch 15/441 Installing : 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scriptlet: zlib-devel-1.2.11-39.el9.x86_64 441/441 Verifying : maloc-1.5-27.el9.x86_64 1/441 Verifying : maloc-devel-1.5-27.el9.x86_64 2/441 Verifying : python3-urllib3-1.26.5-3.el9.noarch 3/441 Verifying : graphite2-1.3.14-9.el9.x86_64 4/441 Verifying : python3-idna-2.10-7.el9.noarch 5/441 Verifying : python3-pyparsing-2.4.7-9.el9.noarch 6/441 Verifying : make-1:4.3-7.el9.x86_64 7/441 Verifying : fonts-filesystem-1:2.0.5-7.el9.1.noarch 8/441 Verifying : libpng-2:1.6.37-12.el9.x86_64 9/441 Verifying : dejavu-sans-fonts-2.37-18.el9.noarch 10/441 Verifying : python3-requests-2.25.1-6.el9.noarch 11/441 Verifying : libedit-3.1-37.20210216cvs.el9.x86_64 12/441 Verifying : python3-chardet-4.0.0-5.el9.noarch 13/441 Verifying : python3-pysocks-1.7.1-12.el9.noarch 14/441 Verifying : avahi-libs-0.8-12.el9.x86_64 15/441 Verifying : libicu-67.1-9.el9.x86_64 16/441 Verifying : python3-pip-wheel-21.2.3-6.el9.noarch 17/441 Verifying : nettle-3.8-3.el9_0.x86_64 18/441 Verifying : python3-six-1.15.0-9.el9.noarch 19/441 Verifying : cups-libs-1:2.3.3op2-16.el9.x86_64 20/441 Verifying : freetype-2.10.4-9.el9.x86_64 21/441 Verifying : dbus-libs-1:1.12.20-7.el9_1.x86_64 22/441 Verifying : harfbuzz-2.7.4-8.el9.x86_64 23/441 Verifying : vim-filesystem-2:8.2.2637-20.el9_1.noarch 24/441 Verifying : python3-setuptools-wheel-53.0.0-12.el9.noarch 25/441 Verifying : python3-setuptools-53.0.0-12.el9.noarch 26/441 Verifying : expat-2.5.0-1.el9.x86_64 27/441 Verifying : shared-mime-info-2.1-5.el9.x86_64 28/441 Verifying : crypto-policies-scripts-20221215-1.git9a18988.el 29/441 Verifying : python3-libs-3.9.16-1.el9.x86_64 30/441 Verifying : gnutls-3.7.6-20.el9_2.x86_64 31/441 Verifying : libquadmath-11.3.1-4.3.el9.x86_64 32/441 Verifying : python3-3.9.16-1.el9.x86_64 33/441 Verifying : libgfortran-11.3.1-4.3.el9.x86_64 34/441 Verifying : glib2-2.68.4-6.el9.x86_64 35/441 Verifying : texlive-atveryend-9:20200406-25.el9.noarch 36/441 Verifying : 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texlive-ucharcat-9:20200406-25.el9.noarch 120/441 Verifying : python3-jinja2-2.11.3-4.el9.noarch 121/441 Verifying : texlive-knuth-local-9:20200406-25.el9.noarch 122/441 Verifying : texlive-graphics-def-9:20200406-25.el9.noarch 123/441 Verifying : texlive-latexbug-9:20200406-25.el9.noarch 124/441 Verifying : libijs-0.35-15.el9.x86_64 125/441 Verifying : texlive-luahbtex-9:20200406-25.el9.x86_64 126/441 Verifying : texlive-wasy-type1-9:20200406-25.el9.noarch 127/441 Verifying : texlive-updmap-map-9:20200406-25.el9.noarch 128/441 Verifying : texlive-texlive-en-9:20200406-25.el9.noarch 129/441 Verifying : texlive-changepage-9:20200406-25.el9.noarch 130/441 Verifying : texlive-ms-9:20200406-25.el9.noarch 131/441 Verifying : texlive-base-9:20200406-25.el9.noarch 132/441 Verifying : libXft-2.3.3-8.el9.x86_64 133/441 Verifying : texlive-xdvi-9:20200406-25.el9.x86_64 134/441 Verifying : texlive-grfext-9:20200406-25.el9.noarch 135/441 Verifying : texlive-paralist-9:20200406-25.el9.noarch 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texlive-fancyref-9:20200406-25.el9.noarch 153/441 Verifying : texlive-bera-9:20200406-25.el9.noarch 154/441 Verifying : texlive-pstricks-add-9:20200406-25.el9.noarch 155/441 Verifying : texlive-minitoc-9:20200406-25.el9.noarch 156/441 Verifying : libmpc-1.2.1-4.el9.x86_64 157/441 Verifying : texlive-eurosym-9:20200406-25.el9.noarch 158/441 Verifying : texlive-euenc-9:20200406-25.el9.noarch 159/441 Verifying : texlive-pst-fill-9:20200406-25.el9.noarch 160/441 Verifying : graphviz-2.44.0-25.el9.x86_64 161/441 Verifying : texlive-polyglossia-9:20200406-25.el9.noarch 162/441 Verifying : texlive-psnfss-9:20200406-25.el9.noarch 163/441 Verifying : texlive-pst-node-9:20200406-25.el9.noarch 164/441 Verifying : texlive-texlive.infra-9:20200406-25.el9.noarch 165/441 Verifying : urw-base35-p052-fonts-20200910-6.el9.noarch 166/441 Verifying : texlive-pst-3d-9:20200406-25.el9.noarch 167/441 Verifying : texlive-collection-latexrecommended-9:20200406-2 168/441 Verifying : texlive-oberdiek-9:20200406-25.el9.noarch 169/441 Verifying : libICE-1.0.10-8.el9.x86_64 170/441 Verifying : texlive-ltxcmds-9:20200406-25.el9.noarch 171/441 Verifying : texlive-texlive-docindex-9:20200406-25.el9.noarc 172/441 Verifying : zziplib-0.13.71-9.el9.x86_64 173/441 Verifying : texlive-booktabs-9:20200406-25.el9.noarch 174/441 Verifying : texlive-mdwtools-9:20200406-25.el9.noarch 175/441 Verifying : python3-rpm-macros-3.9-52.el9.noarch 176/441 Verifying : texlive-natbib-9:20200406-25.el9.noarch 177/441 Verifying : texlive-beton-9:20200406-25.el9.noarch 178/441 Verifying : texlive-sansmathaccent-9:20200406-25.el9.noarch 179/441 Verifying : texlive-bookman-9:20200406-25.el9.noarch 180/441 Verifying : libxcrypt-devel-4.4.18-3.el9.x86_64 181/441 Verifying : lcms2-2.12-3.el9.x86_64 182/441 Verifying : adobe-mappings-cmap-20171205-12.el9.noarch 183/441 Verifying : texlive-lua-alt-getopt-9:20200406-25.el9.noarch 184/441 Verifying : texlive-subfig-9:20200406-25.el9.noarch 185/441 Verifying : texlive-pst-coil-9:20200406-25.el9.noarch 186/441 Verifying : texlive-txfonts-9:20200406-25.el9.noarch 187/441 Verifying : texlive-fancyhdr-9:20200406-25.el9.noarch 188/441 Verifying : texlive-kvdefinekeys-9:20200406-25.el9.noarch 189/441 Verifying : texlive-typehtml-9:20200406-25.el9.noarch 190/441 Verifying : texlive-colorprofiles-9:20200406-25.el9.noarch 191/441 Verifying : texlive-newfloat-9:20200406-25.el9.noarch 192/441 Verifying : python3-numpy-1:1.20.1-5.el9.x86_64 193/441 Verifying : texlive-dvips-9:20200406-25.el9.x86_64 194/441 Verifying : texlive-ltabptch-9:20200406-25.el9.noarch 195/441 Verifying : texlive-tex-9:20200406-25.el9.x86_64 196/441 Verifying : texlive-carlisle-9:20200406-25.el9.noarch 197/441 Verifying : texlive-zapfchan-9:20200406-25.el9.noarch 198/441 Verifying : texlive-ae-9:20200406-25.el9.noarch 199/441 Verifying : texlive-refcount-9:20200406-25.el9.noarch 200/441 Verifying : texlive-mfnfss-9:20200406-25.el9.noarch 201/441 Verifying : texlive-hycolor-9:20200406-25.el9.noarch 202/441 Verifying : texlive-kastrup-9:20200406-25.el9.noarch 203/441 Verifying : librsvg2-2.50.7-1.el9.x86_64 204/441 Verifying : texlive-uniquecounter-9:20200406-25.el9.noarch 205/441 Verifying : texlive-metafont-9:20200406-25.el9.x86_64 206/441 Verifying : poppler-data-0.4.9-9.el9.noarch 207/441 Verifying : texlive-eso-pic-9:20200406-25.el9.noarch 208/441 Verifying : texlive-xetex-9:20200406-25.el9.x86_64 209/441 Verifying : urw-base35-gothic-fonts-20200910-6.el9.noarch 210/441 Verifying : texlive-babelbib-9:20200406-25.el9.noarch 211/441 Verifying : texlive-jknapltx-9:20200406-25.el9.noarch 212/441 Verifying : texlive-bigintcalc-9:20200406-25.el9.noarch 213/441 Verifying : texlive-anysize-9:20200406-25.el9.noarch 214/441 Verifying : texlive-etex-pkg-9:20200406-25.el9.noarch 215/441 Verifying : libtool-ltdl-2.4.6-45.el9.x86_64 216/441 Verifying : texlive-titlesec-9:20200406-25.el9.noarch 217/441 Verifying : libXi-1.7.10-8.el9.x86_64 218/441 Verifying : texlive-hyph-utf8-9:20200406-25.el9.noarch 219/441 Verifying : texlive-times-9:20200406-25.el9.noarch 220/441 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-6.el9.n 221/441 Verifying : texlive-collection-fontsrecommended-9:20200406-2 222/441 Verifying : python3-rpm-generators-12-8.el9.noarch 223/441 Verifying : texlive-index-9:20200406-25.el9.noarch 224/441 Verifying : texlive-translator-9:20200406-25.el9.noarch 225/441 Verifying : texlive-latexconfig-9:20200406-25.el9.noarch 226/441 Verifying : python-rpm-macros-3.9-52.el9.noarch 227/441 Verifying : libX11-1.7.0-7.el9.x86_64 228/441 Verifying : python3-markupsafe-1.1.1-12.el9.x86_64 229/441 Verifying : texlive-amscls-9:20200406-25.el9.noarch 230/441 Verifying : texlive-modes-9:20200406-25.el9.noarch 231/441 Verifying : texlive-mflogo-font-9:20200406-25.el9.noarch 232/441 Verifying : texlive-thumbpdf-9:20200406-25.el9.noarch 233/441 Verifying : texlive-manfnt-font-9:20200406-25.el9.noarch 234/441 Verifying : texlive-xltxtra-9:20200406-25.el9.noarch 235/441 Verifying : texlive-tools-9:20200406-25.el9.noarch 236/441 Verifying : texlive-parallel-9:20200406-25.el9.noarch 237/441 Verifying : texlive-euro-9:20200406-25.el9.noarch 238/441 Verifying : texlive-pslatex-9:20200406-25.el9.noarch 239/441 Verifying : texlive-ltxmisc-9:20200406-25.el9.noarch 240/441 Verifying : texlive-amsfonts-9:20200406-25.el9.noarch 241/441 Verifying : texlive-soul-9:20200406-25.el9.noarch 242/441 Verifying : urw-base35-fonts-20200910-6.el9.noarch 243/441 Verifying : urw-base35-c059-fonts-20200910-6.el9.noarch 244/441 Verifying : libSM-1.2.3-10.el9.x86_64 245/441 Verifying : texlive-fpl-9:20200406-25.el9.noarch 246/441 Verifying : texlive-rcs-9:20200406-25.el9.noarch 247/441 Verifying : libpaper-1.1.28-4.el9.x86_64 248/441 Verifying : perl-XML-XPath-1.44-11.el9.noarch 249/441 Verifying : texlive-pst-tree-9:20200406-25.el9.noarch 250/441 Verifying : texlive-tex-gyre-9:20200406-25.el9.noarch 251/441 Verifying : texlive-utopia-9:20200406-25.el9.noarch 252/441 Verifying : texlive-tex-gyre-math-9:20200406-25.el9.noarch 253/441 Verifying : python3-babel-2.9.1-2.el9.noarch 254/441 Verifying : libXcomposite-0.4.5-7.el9.x86_64 255/441 Verifying : texlive-l3experimental-9:20200406-25.el9.noarch 256/441 Verifying : texlive-microtype-9:20200406-25.el9.noarch 257/441 Verifying : texlive-lm-math-9:20200406-25.el9.noarch 258/441 Verifying : texlive-luaotfload-9:20200406-25.el9.noarch 259/441 Verifying : texlive-xetexconfig-9:20200406-25.el9.noarch 260/441 Verifying : jbigkit-libs-2.1-23.el9.x86_64 261/441 Verifying : texlive-l3packages-9:20200406-25.el9.noarch 262/441 Verifying : texlive-footnotehyper-9:20200406-25.el9.noarch 263/441 Verifying : texlive-pdflscape-9:20200406-25.el9.noarch 264/441 Verifying : texlive-hologo-9:20200406-25.el9.noarch 265/441 Verifying : texlive-lualibs-9:20200406-25.el9.noarch 266/441 Verifying : texlive-pst-text-9:20200406-25.el9.noarch 267/441 Verifying : texlive-xunicode-9:20200406-25.el9.noarch 268/441 Verifying : adobe-mappings-pdf-20180407-10.el9.noarch 269/441 Verifying : texlive-auxhook-9:20200406-25.el9.noarch 270/441 Verifying : libfontenc-1.1.3-17.el9.x86_64 271/441 Verifying : texlive-psfrag-9:20200406-25.el9.noarch 272/441 Verifying : texlive-hyperref-9:20200406-25.el9.noarch 273/441 Verifying : texlive-setspace-9:20200406-25.el9.noarch 274/441 Verifying : teckit-2.5.9-8.el9.x86_64 275/441 Verifying : texlive-etexcmds-9:20200406-25.el9.noarch 276/441 Verifying : urw-base35-fonts-common-20200910-6.el9.noarch 277/441 Verifying : texlive-ragged2e-9:20200406-25.el9.noarch 278/441 Verifying : texlive-infwarerr-9:20200406-25.el9.noarch 279/441 Verifying : perl-Digest-1.19-4.el9.noarch 280/441 Verifying : texlive-babel-9:20200406-25.el9.noarch 281/441 Verifying : python3-packaging-20.9-5.el9.noarch 282/441 Verifying : texlive-pdfcolmk-9:20200406-25.el9.noarch 283/441 Verifying : texlive-ntgclass-9:20200406-25.el9.noarch 284/441 Verifying : texlive-metalogo-9:20200406-25.el9.noarch 285/441 Verifying : texlive-pst-math-9:20200406-25.el9.noarch 286/441 Verifying : texlive-lm-9:20200406-25.el9.noarch 287/441 Verifying : texlive-alphalph-9:20200406-25.el9.noarch 288/441 Verifying : texlive-etex-9:20200406-25.el9.noarch 289/441 Verifying : texlive-texlive-common-doc-9:20200406-25.el9.noa 290/441 Verifying : xml-common-0.6.3-58.el9.noarch 291/441 Verifying : texlive-filecontents-9:20200406-25.el9.noarch 292/441 Verifying : texlive-ctable-9:20200406-25.el9.noarch 293/441 Verifying : libXmu-1.1.3-8.el9.x86_64 294/441 Verifying : texlive-cm-super-9:20200406-25.el9.noarch 295/441 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-6. 296/441 Verifying : texlive-textcase-9:20200406-25.el9.noarch 297/441 Verifying : texlive-iftex-9:20200406-25.el9.noarch 298/441 Verifying : texlive-dvipdfmx-9:20200406-25.el9.x86_64 299/441 Verifying : texlive-cmextra-9:20200406-25.el9.noarch 300/441 Verifying : flexiblas-netlib-3.0.4-8.el9.x86_64 301/441 Verifying : texlive-mfware-9:20200406-25.el9.x86_64 302/441 Verifying : texlive-amsmath-9:20200406-25.el9.noarch 303/441 Verifying : google-droid-sans-fonts-20200215-11.el9.2.noarch 304/441 Verifying : texlive-url-9:20200406-25.el9.noarch 305/441 Verifying : texlive-luatex-9:20200406-25.el9.x86_64 306/441 Verifying : urw-base35-nimbus-roman-fonts-20200910-6.el9.noa 307/441 Verifying : urw-base35-bookman-fonts-20200910-6.el9.noarch 308/441 Verifying : texlive-tipa-9:20200406-25.el9.noarch 309/441 Verifying : texlive-pspicture-9:20200406-25.el9.noarch 310/441 Verifying : libXrender-0.9.10-16.el9.x86_64 311/441 Verifying : texlive-notoccite-9:20200406-25.el9.noarch 312/441 Verifying : texlive-fontspec-9:20200406-25.el9.noarch 313/441 Verifying : texlive-catchfile-9:20200406-25.el9.noarch 314/441 Verifying : texlive-rerunfilecheck-9:20200406-25.el9.noarch 315/441 Verifying : texlive-euler-9:20200406-25.el9.noarch 316/441 Verifying : texlive-lib-9:20200406-25.el9.x86_64 317/441 Verifying : cairo-1.17.4-7.el9.x86_64 318/441 Verifying : texlive-extsizes-9:20200406-25.el9.noarch 319/441 Verifying : texlive-stringenc-9:20200406-25.el9.noarch 320/441 Verifying : texlive-bibtex-9:20200406-25.el9.x86_64 321/441 Verifying : texlive-csquotes-9:20200406-25.el9.noarch 322/441 Verifying : texlive-xkeyval-9:20200406-25.el9.noarch 323/441 Verifying : libXaw-1.0.13-19.el9.x86_64 324/441 Verifying : texlive-crop-9:20200406-25.el9.noarch 325/441 Verifying : texlive-charter-9:20200406-25.el9.noarch 326/441 Verifying : texlive-hobsub-9:20200406-25.el9.noarch 327/441 Verifying : texlive-zref-9:20200406-25.el9.noarch 328/441 Verifying : texlive-knuth-lib-9:20200406-25.el9.noarch 329/441 Verifying : texlive-wasysym-9:20200406-25.el9.noarch 330/441 Verifying : texlive-fp-9:20200406-25.el9.noarch 331/441 Verifying : texlive-qstest-9:20200406-25.el9.noarch 332/441 Verifying : texlive-bidi-9:20200406-25.el9.noarch 333/441 Verifying : texlive-tex-ini-files-9:20200406-25.el9.noarch 334/441 Verifying : python3-pytz-2021.1-4.el9.noarch 335/441 Verifying : texlive-glyphlist-9:20200406-25.el9.noarch 336/441 Verifying : libxcb-1.13.1-9.el9.x86_64 337/441 Verifying : texlive-lineno-9:20200406-25.el9.noarch 338/441 Verifying : perl-encoding-4:3.00-462.el9.x86_64 339/441 Verifying : libXinerama-1.1.4-10.el9.x86_64 340/441 Verifying : texlive-epstopdf-pkg-9:20200406-25.el9.noarch 341/441 Verifying : libXfixes-5.0.3-16.el9.x86_64 342/441 Verifying : texlive-pst-grad-9:20200406-25.el9.noarch 343/441 Verifying : texlive-avantgar-9:20200406-25.el9.noarch 344/441 Verifying : texlive-ifmtarg-9:20200406-25.el9.noarch 345/441 Verifying : atk-2.36.0-5.el9.x86_64 346/441 Verifying : texlive-multido-9:20200406-25.el9.noarch 347/441 Verifying : texlive-unicode-math-9:20200406-25.el9.noarch 348/441 Verifying : texlive-babel-english-9:20200406-25.el9.noarch 349/441 Verifying : gd-2.3.2-3.el9.x86_64 350/441 Verifying : 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texlive-symbol-9:20200406-25.el9.noarch 367/441 Verifying : texlive-sansmath-9:20200406-25.el9.noarch 368/441 Verifying : texlive-hyphen-base-9:20200406-25.el9.noarch 369/441 Verifying : adobe-mappings-cmap-deprecated-20171205-12.el9.n 370/441 Verifying : texlive-unicode-data-9:20200406-25.el9.noarch 371/441 Verifying : libXdamage-1.1.5-7.el9.x86_64 372/441 Verifying : texlive-cm-9:20200406-25.el9.noarch 373/441 Verifying : texlive-float-9:20200406-25.el9.noarch 374/441 Verifying : texlive-attachfile-9:20200406-25.el9.noarch 375/441 Verifying : texlive-currfile-9:20200406-25.el9.noarch 376/441 Verifying : texlive-pdftexcmds-9:20200406-25.el9.noarch 377/441 Verifying : texlive-xifthen-9:20200406-25.el9.noarch 378/441 Verifying : fribidi-1.0.10-6.el9.2.x86_64 379/441 Verifying : openjpeg2-2.4.0-7.el9.x86_64 380/441 Verifying : hicolor-icon-theme-0.17-13.el9.noarch 381/441 Verifying : libXpm-3.5.13-8.el9_1.x86_64 382/441 Verifying : nss-sysinit-3.79.0-18.el9_1.x86_64 383/441 Verifying : nss-3.79.0-18.el9_1.x86_64 384/441 Verifying : nss-softokn-3.79.0-18.el9_1.x86_64 385/441 Verifying : nss-util-3.79.0-18.el9_1.x86_64 386/441 Verifying : libwebp-1.2.0-6.el9_1.x86_64 387/441 Verifying : libjpeg-turbo-2.0.90-6.el9_1.x86_64 388/441 Verifying : fontconfig-2.14.0-2.el9_1.x86_64 389/441 Verifying : nspr-4.34.0-18.el9_1.x86_64 390/441 Verifying : nss-softokn-freebl-3.79.0-18.el9_1.x86_64 391/441 Verifying : jbig2dec-libs-0.19-7.el9.x86_64 392/441 Verifying : ghostscript-tools-printing-9.54.0-9.el9.x86_64 393/441 Verifying : poppler-21.01.0-14.el9.x86_64 394/441 Verifying : cpp-11.3.1-4.3.el9.x86_64 395/441 Verifying : gcc-plugin-annobin-11.3.1-4.3.el9.x86_64 396/441 Verifying : perl-open-1.12-480.el9.noarch 397/441 Verifying : perl-File-Find-1.37-480.el9.noarch 398/441 Verifying : cmake-rpm-macros-3.20.2-8.el9.noarch 399/441 Verifying : perl-B-1.80-480.el9.x86_64 400/441 Verifying : cmake-filesystem-3.20.2-8.el9.x86_64 401/441 Verifying : llvm-libs-15.0.7-1.el9.x86_64 402/441 Verifying : perl-FileHandle-2.03-480.el9.noarch 403/441 Verifying : zlib-devel-1.2.11-39.el9.x86_64 404/441 Verifying : ghostscript-9.54.0-9.el9.x86_64 405/441 Verifying : gdk-pixbuf2-2.42.6-3.el9.x86_64 406/441 Verifying : kernel-headers-5.14.0-284.11.1.el9_2.x86_64 407/441 Verifying : glibc-headers-2.34-60.el9.x86_64 408/441 Verifying : gcc-11.3.1-4.3.el9.x86_64 409/441 Verifying : libgs-9.54.0-9.el9.x86_64 410/441 Verifying : perl-File-Copy-2.34-480.el9.noarch 411/441 Verifying : cmake-data-3.20.2-8.el9.noarch 412/441 Verifying : gdk-pixbuf2-modules-2.42.6-3.el9.x86_64 413/441 Verifying : pango-1.48.7-3.el9.x86_64 414/441 Verifying : cmake-3.20.2-8.el9.x86_64 415/441 Verifying : gcc-c++-11.3.1-4.3.el9.x86_64 416/441 Verifying : openblas-openmp-0.3.21-2.el9.x86_64 417/441 Verifying : gtk2-2.24.33-8.el9.x86_64 418/441 Verifying : openblas-0.3.21-2.el9.x86_64 419/441 Verifying : annobin-11.05-1.el9.x86_64 420/441 Verifying : libstdc++-devel-11.3.1-4.3.el9.x86_64 421/441 Verifying : ghostscript-tools-fonts-9.54.0-9.el9.x86_64 422/441 Verifying : python3-devel-3.9.16-1.el9.x86_64 423/441 Verifying : libtiff-4.4.0-7.el9.x86_64 424/441 Verifying : glibc-devel-2.34-60.el9.x86_64 425/441 Verifying : emacs-filesystem-1:27.2-8.el9_2.1.noarch 426/441 Verifying : python3-imagesize-1.2.0-6.el9.noarch 427/441 Verifying : swig-4.0.2-8.el9.x86_64 428/441 Verifying : python3-sphinxcontrib-jsmath-1.0.1-12.el9.noarch 429/441 Verifying : python3-docutils-0.16-6.el9.noarch 430/441 Verifying : python3-pygments-2.7.4-4.el9.noarch 431/441 Verifying : python3-snowballstemmer-1.9.0-10.el9.noarch 432/441 Verifying : python3-sphinxcontrib-serializinghtml-1.1.4-5.el 433/441 Verifying : doxygen-1:1.9.1-11.el9.x86_64 434/441 Verifying : python3-sphinx-1:3.4.3-7.el9.noarch 435/441 Verifying : python3-sphinxcontrib-qthelp-1.0.3-5.el9.noarch 436/441 Verifying : python3-sphinxcontrib-applehelp-1.0.2-5.el9.noar 437/441 Verifying : python3-sphinxcontrib-devhelp-1.0.2-5.el9.noarch 438/441 Verifying : python3-sphinx-theme-alabaster-0.7.12-13.el9.noa 439/441 Verifying : python3-sphinxcontrib-htmlhelp-1.0.3-6.el9.noarc 440/441 Verifying : pyproject-rpm-macros-1.6.2-1.el9.noarch 441/441 Installed products updated. Installed: adobe-mappings-cmap-20171205-12.el9.noarch adobe-mappings-cmap-deprecated-20171205-12.el9.noarch adobe-mappings-pdf-20180407-10.el9.noarch annobin-11.05-1.el9.x86_64 atk-2.36.0-5.el9.x86_64 avahi-libs-0.8-12.el9.x86_64 cairo-1.17.4-7.el9.x86_64 cairo-gobject-1.17.4-7.el9.x86_64 cmake-3.20.2-8.el9.x86_64 cmake-data-3.20.2-8.el9.noarch cmake-filesystem-3.20.2-8.el9.x86_64 cmake-rpm-macros-3.20.2-8.el9.noarch cpp-11.3.1-4.3.el9.x86_64 crypto-policies-scripts-20221215-1.git9a18988.el9.noarch cups-libs-1:2.3.3op2-16.el9.x86_64 dbus-libs-1:1.12.20-7.el9_1.x86_64 dejavu-sans-fonts-2.37-18.el9.noarch doxygen-1:1.9.1-11.el9.x86_64 emacs-filesystem-1:27.2-8.el9_2.1.noarch expat-2.5.0-1.el9.x86_64 flexiblas-3.0.4-8.el9.x86_64 flexiblas-netlib-3.0.4-8.el9.x86_64 flexiblas-openblas-openmp-3.0.4-8.el9.x86_64 fontconfig-2.14.0-2.el9_1.x86_64 fonts-filesystem-1:2.0.5-7.el9.1.noarch freetype-2.10.4-9.el9.x86_64 fribidi-1.0.10-6.el9.2.x86_64 gcc-11.3.1-4.3.el9.x86_64 gcc-c++-11.3.1-4.3.el9.x86_64 gcc-plugin-annobin-11.3.1-4.3.el9.x86_64 gd-2.3.2-3.el9.x86_64 gdk-pixbuf2-2.42.6-3.el9.x86_64 gdk-pixbuf2-modules-2.42.6-3.el9.x86_64 ghostscript-9.54.0-9.el9.x86_64 ghostscript-tools-fonts-9.54.0-9.el9.x86_64 ghostscript-tools-printing-9.54.0-9.el9.x86_64 glib2-2.68.4-6.el9.x86_64 glibc-devel-2.34-60.el9.x86_64 glibc-headers-2.34-60.el9.x86_64 gnutls-3.7.6-20.el9_2.x86_64 google-droid-sans-fonts-20200215-11.el9.2.noarch graphite2-1.3.14-9.el9.x86_64 graphviz-2.44.0-25.el9.x86_64 gtk-update-icon-cache-3.24.31-2.el9.x86_64 gtk2-2.24.33-8.el9.x86_64 harfbuzz-2.7.4-8.el9.x86_64 hicolor-icon-theme-0.17-13.el9.noarch jbig2dec-libs-0.19-7.el9.x86_64 jbigkit-libs-2.1-23.el9.x86_64 kernel-headers-5.14.0-284.11.1.el9_2.x86_64 langpacks-core-font-en-3.0-16.el9.noarch lcms2-2.12-3.el9.x86_64 libICE-1.0.10-8.el9.x86_64 libSM-1.2.3-10.el9.x86_64 libX11-1.7.0-7.el9.x86_64 libX11-common-1.7.0-7.el9.noarch libXau-1.0.9-8.el9.x86_64 libXaw-1.0.13-19.el9.x86_64 libXcomposite-0.4.5-7.el9.x86_64 libXcursor-1.2.0-7.el9.x86_64 libXdamage-1.1.5-7.el9.x86_64 libXext-1.3.4-8.el9.x86_64 libXfixes-5.0.3-16.el9.x86_64 libXft-2.3.3-8.el9.x86_64 libXi-1.7.10-8.el9.x86_64 libXinerama-1.1.4-10.el9.x86_64 libXmu-1.1.3-8.el9.x86_64 libXpm-3.5.13-8.el9_1.x86_64 libXrandr-1.5.2-8.el9.x86_64 libXrender-0.9.10-16.el9.x86_64 libXt-1.2.0-6.el9.x86_64 libdatrie-0.2.13-4.el9.x86_64 libedit-3.1-37.20210216cvs.el9.x86_64 libfontenc-1.1.3-17.el9.x86_64 libgfortran-11.3.1-4.3.el9.x86_64 libgs-9.54.0-9.el9.x86_64 libicu-67.1-9.el9.x86_64 libijs-0.35-15.el9.x86_64 libjpeg-turbo-2.0.90-6.el9_1.x86_64 libmpc-1.2.1-4.el9.x86_64 libpaper-1.1.28-4.el9.x86_64 libpng-2:1.6.37-12.el9.x86_64 libquadmath-11.3.1-4.3.el9.x86_64 librsvg2-2.50.7-1.el9.x86_64 libstdc++-devel-11.3.1-4.3.el9.x86_64 libthai-0.1.28-8.el9.x86_64 libtiff-4.4.0-7.el9.x86_64 libtool-ltdl-2.4.6-45.el9.x86_64 libuv-1:1.42.0-1.el9.x86_64 libwebp-1.2.0-6.el9_1.x86_64 libxcb-1.13.1-9.el9.x86_64 libxcrypt-devel-4.4.18-3.el9.x86_64 llvm-libs-15.0.7-1.el9.x86_64 make-1:4.3-7.el9.x86_64 maloc-1.5-27.el9.x86_64 maloc-devel-1.5-27.el9.x86_64 mkfontscale-1.2.1-3.el9.x86_64 nettle-3.8-3.el9_0.x86_64 nspr-4.34.0-18.el9_1.x86_64 nss-3.79.0-18.el9_1.x86_64 nss-softokn-3.79.0-18.el9_1.x86_64 nss-softokn-freebl-3.79.0-18.el9_1.x86_64 nss-sysinit-3.79.0-18.el9_1.x86_64 nss-util-3.79.0-18.el9_1.x86_64 openblas-0.3.21-2.el9.x86_64 openblas-openmp-0.3.21-2.el9.x86_64 openjpeg2-2.4.0-7.el9.x86_64 pango-1.48.7-3.el9.x86_64 perl-B-1.80-480.el9.x86_64 perl-Data-Dumper-2.174-462.el9.x86_64 perl-Digest-1.19-4.el9.noarch perl-Digest-MD5-2.58-4.el9.x86_64 perl-File-Copy-2.34-480.el9.noarch perl-File-Find-1.37-480.el9.noarch perl-FileHandle-2.03-480.el9.noarch perl-Filter-2:1.60-4.el9.x86_64 perl-Text-Unidecode-1.30-16.el9.noarch perl-XML-Parser-2.46-9.el9.x86_64 perl-XML-XPath-1.44-11.el9.noarch perl-encoding-4:3.00-462.el9.x86_64 perl-open-1.12-480.el9.noarch pixman-0.40.0-5.el9.x86_64 poppler-21.01.0-14.el9.x86_64 poppler-data-0.4.9-9.el9.noarch pyproject-rpm-macros-1.6.2-1.el9.noarch python-rpm-macros-3.9-52.el9.noarch python3-3.9.16-1.el9.x86_64 python3-babel-2.9.1-2.el9.noarch python3-chardet-4.0.0-5.el9.noarch python3-devel-3.9.16-1.el9.x86_64 python3-docutils-0.16-6.el9.noarch python3-idna-2.10-7.el9.noarch python3-imagesize-1.2.0-6.el9.noarch python3-jinja2-2.11.3-4.el9.noarch python3-libs-3.9.16-1.el9.x86_64 python3-markupsafe-1.1.1-12.el9.x86_64 python3-numpy-1:1.20.1-5.el9.x86_64 python3-packaging-20.9-5.el9.noarch python3-pip-wheel-21.2.3-6.el9.noarch python3-pygments-2.7.4-4.el9.noarch python3-pyparsing-2.4.7-9.el9.noarch python3-pysocks-1.7.1-12.el9.noarch python3-pytz-2021.1-4.el9.noarch python3-requests-2.25.1-6.el9.noarch python3-rpm-generators-12-8.el9.noarch python3-rpm-macros-3.9-52.el9.noarch python3-setuptools-53.0.0-12.el9.noarch python3-setuptools-wheel-53.0.0-12.el9.noarch python3-six-1.15.0-9.el9.noarch python3-snowballstemmer-1.9.0-10.el9.noarch python3-sphinx-1:3.4.3-7.el9.noarch python3-sphinx-theme-alabaster-0.7.12-13.el9.noarch python3-sphinxcontrib-applehelp-1.0.2-5.el9.noarch python3-sphinxcontrib-devhelp-1.0.2-5.el9.noarch python3-sphinxcontrib-htmlhelp-1.0.3-6.el9.noarch python3-sphinxcontrib-jsmath-1.0.1-12.el9.noarch python3-sphinxcontrib-qthelp-1.0.3-5.el9.noarch python3-sphinxcontrib-serializinghtml-1.1.4-5.el9.noarch python3-urllib3-1.26.5-3.el9.noarch shared-mime-info-2.1-5.el9.x86_64 swig-4.0.2-8.el9.x86_64 teckit-2.5.9-8.el9.x86_64 texlive-ae-9:20200406-25.el9.noarch texlive-algorithms-9:20200406-25.el9.noarch texlive-alphalph-9:20200406-25.el9.noarch texlive-amscls-9:20200406-25.el9.noarch texlive-amsfonts-9:20200406-25.el9.noarch texlive-amsmath-9:20200406-25.el9.noarch texlive-anysize-9:20200406-25.el9.noarch texlive-atbegshi-9:20200406-25.el9.noarch texlive-attachfile-9:20200406-25.el9.noarch texlive-attachfile2-9:20200406-25.el9.noarch texlive-atveryend-9:20200406-25.el9.noarch texlive-auxhook-9:20200406-25.el9.noarch texlive-avantgar-9:20200406-25.el9.noarch texlive-babel-9:20200406-25.el9.noarch texlive-babel-english-9:20200406-25.el9.noarch texlive-babelbib-9:20200406-25.el9.noarch texlive-base-9:20200406-25.el9.noarch texlive-beamer-9:20200406-25.el9.noarch texlive-bera-9:20200406-25.el9.noarch texlive-beton-9:20200406-25.el9.noarch texlive-bibtex-9:20200406-25.el9.x86_64 texlive-bidi-9:20200406-25.el9.noarch texlive-bigintcalc-9:20200406-25.el9.noarch texlive-bitset-9:20200406-25.el9.noarch texlive-bookman-9:20200406-25.el9.noarch texlive-bookmark-9:20200406-25.el9.noarch texlive-booktabs-9:20200406-25.el9.noarch texlive-breakurl-9:20200406-25.el9.noarch texlive-breqn-9:20200406-25.el9.noarch texlive-caption-9:20200406-25.el9.noarch texlive-carlisle-9:20200406-25.el9.noarch texlive-catchfile-9:20200406-25.el9.noarch texlive-changepage-9:20200406-25.el9.noarch texlive-charter-9:20200406-25.el9.noarch texlive-chngcntr-9:20200406-25.el9.noarch texlive-cite-9:20200406-25.el9.noarch texlive-cm-9:20200406-25.el9.noarch texlive-cm-super-9:20200406-25.el9.noarch texlive-cmap-9:20200406-25.el9.noarch texlive-cmextra-9:20200406-25.el9.noarch texlive-collection-basic-9:20200406-25.el9.noarch texlive-collection-fontsrecommended-9:20200406-25.el9.noarch texlive-collection-latex-9:20200406-25.el9.noarch texlive-collection-latexrecommended-9:20200406-25.el9.noarch texlive-colorprofiles-9:20200406-25.el9.noarch texlive-colortbl-9:20200406-25.el9.noarch texlive-courier-9:20200406-25.el9.noarch texlive-crop-9:20200406-25.el9.noarch texlive-csquotes-9:20200406-25.el9.noarch texlive-ctable-9:20200406-25.el9.noarch texlive-currfile-9:20200406-25.el9.noarch texlive-dvipdfmx-9:20200406-25.el9.x86_64 texlive-dvips-9:20200406-25.el9.x86_64 texlive-ec-9:20200406-25.el9.noarch texlive-enctex-9:20200406-25.el9.noarch texlive-enumitem-9:20200406-25.el9.noarch texlive-epstopdf-pkg-9:20200406-25.el9.noarch texlive-eso-pic-9:20200406-25.el9.noarch texlive-etex-9:20200406-25.el9.noarch texlive-etex-pkg-9:20200406-25.el9.noarch texlive-etexcmds-9:20200406-25.el9.noarch texlive-etoolbox-9:20200406-25.el9.noarch texlive-euenc-9:20200406-25.el9.noarch texlive-euler-9:20200406-25.el9.noarch texlive-euro-9:20200406-25.el9.noarch texlive-eurosym-9:20200406-25.el9.noarch texlive-extsizes-9:20200406-25.el9.noarch texlive-fancybox-9:20200406-25.el9.noarch texlive-fancyhdr-9:20200406-25.el9.noarch texlive-fancyref-9:20200406-25.el9.noarch texlive-fancyvrb-9:20200406-25.el9.noarch texlive-filecontents-9:20200406-25.el9.noarch texlive-filehook-9:20200406-25.el9.noarch texlive-finstrut-9:20200406-25.el9.noarch texlive-fix2col-9:20200406-25.el9.noarch texlive-float-9:20200406-25.el9.noarch texlive-fontspec-9:20200406-25.el9.noarch texlive-footmisc-9:20200406-25.el9.noarch texlive-footnotehyper-9:20200406-25.el9.noarch texlive-fp-9:20200406-25.el9.noarch texlive-fpl-9:20200406-25.el9.noarch texlive-geometry-9:20200406-25.el9.noarch texlive-gettitlestring-9:20200406-25.el9.noarch texlive-glyphlist-9:20200406-25.el9.noarch texlive-graphics-9:20200406-25.el9.noarch texlive-graphics-cfg-9:20200406-25.el9.noarch texlive-graphics-def-9:20200406-25.el9.noarch texlive-grfext-9:20200406-25.el9.noarch texlive-grffile-9:20200406-25.el9.noarch texlive-helvetic-9:20200406-25.el9.noarch texlive-hobsub-9:20200406-25.el9.noarch texlive-hologo-9:20200406-25.el9.noarch texlive-hycolor-9:20200406-25.el9.noarch texlive-hyperref-9:20200406-25.el9.noarch texlive-hyph-utf8-9:20200406-25.el9.noarch texlive-hyphen-base-9:20200406-25.el9.noarch texlive-hyphenex-9:20200406-25.el9.noarch texlive-ifmtarg-9:20200406-25.el9.noarch texlive-ifplatform-9:20200406-25.el9.noarch texlive-iftex-9:20200406-25.el9.noarch texlive-index-9:20200406-25.el9.noarch texlive-infwarerr-9:20200406-25.el9.noarch texlive-intcalc-9:20200406-25.el9.noarch texlive-jknapltx-9:20200406-25.el9.noarch texlive-kastrup-9:20200406-25.el9.noarch texlive-knuth-lib-9:20200406-25.el9.noarch texlive-knuth-local-9:20200406-25.el9.noarch texlive-koma-script-9:20200406-25.el9.noarch texlive-kpathsea-9:20200406-25.el9.x86_64 texlive-kvdefinekeys-9:20200406-25.el9.noarch texlive-kvoptions-9:20200406-25.el9.noarch texlive-kvsetkeys-9:20200406-25.el9.noarch texlive-l3backend-9:20200406-25.el9.noarch texlive-l3experimental-9:20200406-25.el9.noarch texlive-l3kernel-9:20200406-25.el9.noarch texlive-l3packages-9:20200406-25.el9.noarch texlive-latex-9:20200406-25.el9.noarch texlive-latex-fonts-9:20200406-25.el9.noarch texlive-latexbug-9:20200406-25.el9.noarch texlive-latexconfig-9:20200406-25.el9.noarch texlive-letltxmacro-9:20200406-25.el9.noarch texlive-lib-9:20200406-25.el9.x86_64 texlive-lineno-9:20200406-25.el9.noarch texlive-listings-9:20200406-25.el9.noarch texlive-lm-9:20200406-25.el9.noarch texlive-lm-math-9:20200406-25.el9.noarch texlive-ltabptch-9:20200406-25.el9.noarch texlive-ltxcmds-9:20200406-25.el9.noarch texlive-ltxmisc-9:20200406-25.el9.noarch texlive-lua-alt-getopt-9:20200406-25.el9.noarch texlive-luahbtex-9:20200406-25.el9.x86_64 texlive-lualatex-math-9:20200406-25.el9.noarch texlive-lualibs-9:20200406-25.el9.noarch texlive-luaotfload-9:20200406-25.el9.noarch texlive-luatex-9:20200406-25.el9.x86_64 texlive-luatexbase-9:20200406-25.el9.noarch texlive-lwarp-9:20200406-25.el9.noarch texlive-makecmds-9:20200406-25.el9.noarch texlive-makeindex-9:20200406-25.el9.x86_64 texlive-manfnt-font-9:20200406-25.el9.noarch texlive-marginnote-9:20200406-25.el9.noarch texlive-marvosym-9:20200406-25.el9.noarch texlive-mathpazo-9:20200406-25.el9.noarch texlive-mathspec-9:20200406-25.el9.noarch texlive-mathtools-9:20200406-25.el9.noarch texlive-mdwtools-9:20200406-25.el9.noarch texlive-memoir-9:20200406-25.el9.noarch texlive-metafont-9:20200406-25.el9.x86_64 texlive-metalogo-9:20200406-25.el9.noarch texlive-mflogo-9:20200406-25.el9.noarch texlive-mflogo-font-9:20200406-25.el9.noarch texlive-mfnfss-9:20200406-25.el9.noarch texlive-mfware-9:20200406-25.el9.x86_64 texlive-microtype-9:20200406-25.el9.noarch texlive-minitoc-9:20200406-25.el9.noarch texlive-mnsymbol-9:20200406-25.el9.noarch texlive-modes-9:20200406-25.el9.noarch texlive-mparhack-9:20200406-25.el9.noarch texlive-mptopdf-9:20200406-25.el9.noarch texlive-ms-9:20200406-25.el9.noarch texlive-multido-9:20200406-25.el9.noarch texlive-natbib-9:20200406-25.el9.noarch texlive-ncntrsbk-9:20200406-25.el9.noarch texlive-newfloat-9:20200406-25.el9.noarch texlive-notoccite-9:20200406-25.el9.noarch texlive-ntgclass-9:20200406-25.el9.noarch texlive-oberdiek-9:20200406-25.el9.noarch texlive-palatino-9:20200406-25.el9.noarch texlive-paralist-9:20200406-25.el9.noarch texlive-parallel-9:20200406-25.el9.noarch texlive-parskip-9:20200406-25.el9.noarch texlive-pdfcolmk-9:20200406-25.el9.noarch texlive-pdfescape-9:20200406-25.el9.noarch texlive-pdflscape-9:20200406-25.el9.noarch texlive-pdfpages-9:20200406-25.el9.noarch texlive-pdftex-9:20200406-25.el9.x86_64 texlive-pdftexcmds-9:20200406-25.el9.noarch texlive-pgf-9:20200406-25.el9.noarch texlive-placeins-9:20200406-25.el9.noarch texlive-plain-9:20200406-25.el9.noarch texlive-polyglossia-9:20200406-25.el9.noarch texlive-psfrag-9:20200406-25.el9.noarch texlive-pslatex-9:20200406-25.el9.noarch texlive-psnfss-9:20200406-25.el9.noarch texlive-pspicture-9:20200406-25.el9.noarch texlive-pst-3d-9:20200406-25.el9.noarch texlive-pst-arrow-9:20200406-25.el9.noarch texlive-pst-coil-9:20200406-25.el9.noarch texlive-pst-eps-9:20200406-25.el9.noarch texlive-pst-fill-9:20200406-25.el9.noarch texlive-pst-grad-9:20200406-25.el9.noarch texlive-pst-math-9:20200406-25.el9.noarch texlive-pst-node-9:20200406-25.el9.noarch texlive-pst-plot-9:20200406-25.el9.noarch texlive-pst-text-9:20200406-25.el9.noarch texlive-pst-tools-9:20200406-25.el9.noarch texlive-pst-tree-9:20200406-25.el9.noarch texlive-pstricks-9:20200406-25.el9.noarch texlive-pstricks-add-9:20200406-25.el9.noarch texlive-pxfonts-9:20200406-25.el9.noarch texlive-qstest-9:20200406-25.el9.noarch texlive-ragged2e-9:20200406-25.el9.noarch texlive-rcs-9:20200406-25.el9.noarch texlive-realscripts-9:20200406-25.el9.noarch texlive-refcount-9:20200406-25.el9.noarch texlive-rerunfilecheck-9:20200406-25.el9.noarch texlive-rsfs-9:20200406-25.el9.noarch texlive-sansmath-9:20200406-25.el9.noarch texlive-sansmathaccent-9:20200406-25.el9.noarch texlive-sauerj-9:20200406-25.el9.noarch texlive-section-9:20200406-25.el9.noarch texlive-seminar-9:20200406-25.el9.noarch texlive-sepnum-9:20200406-25.el9.noarch texlive-setspace-9:20200406-25.el9.noarch texlive-showexpl-9:20200406-25.el9.noarch texlive-soul-9:20200406-25.el9.noarch texlive-stringenc-9:20200406-25.el9.noarch texlive-subfig-9:20200406-25.el9.noarch texlive-symbol-9:20200406-25.el9.noarch texlive-tex-9:20200406-25.el9.x86_64 texlive-tex-gyre-9:20200406-25.el9.noarch texlive-tex-gyre-math-9:20200406-25.el9.noarch texlive-tex-ini-files-9:20200406-25.el9.noarch texlive-texlive-common-doc-9:20200406-25.el9.noarch texlive-texlive-docindex-9:20200406-25.el9.noarch texlive-texlive-en-9:20200406-25.el9.noarch texlive-texlive-msg-translations-9:20200406-25.el9.noarch texlive-texlive-scripts-9:20200406-25.el9.noarch texlive-texlive.infra-9:20200406-25.el9.noarch texlive-textcase-9:20200406-25.el9.noarch texlive-thumbpdf-9:20200406-25.el9.noarch texlive-times-9:20200406-25.el9.noarch texlive-tipa-9:20200406-25.el9.noarch texlive-titlesec-9:20200406-25.el9.noarch texlive-tools-9:20200406-25.el9.noarch texlive-translator-9:20200406-25.el9.noarch texlive-txfonts-9:20200406-25.el9.noarch texlive-typehtml-9:20200406-25.el9.noarch texlive-ucharcat-9:20200406-25.el9.noarch texlive-ucs-9:20200406-25.el9.noarch texlive-underscore-9:20200406-25.el9.noarch texlive-unicode-data-9:20200406-25.el9.noarch texlive-unicode-math-9:20200406-25.el9.noarch texlive-uniquecounter-9:20200406-25.el9.noarch texlive-updmap-map-9:20200406-25.el9.noarch texlive-url-9:20200406-25.el9.noarch texlive-utopia-9:20200406-25.el9.noarch texlive-varwidth-9:20200406-25.el9.noarch texlive-wasy-9:20200406-25.el9.noarch texlive-wasy-type1-9:20200406-25.el9.noarch texlive-wasysym-9:20200406-25.el9.noarch texlive-xcolor-9:20200406-25.el9.noarch texlive-xdvi-9:20200406-25.el9.x86_64 texlive-xetex-9:20200406-25.el9.x86_64 texlive-xetexconfig-9:20200406-25.el9.noarch texlive-xifthen-9:20200406-25.el9.noarch texlive-xkeyval-9:20200406-25.el9.noarch texlive-xltxtra-9:20200406-25.el9.noarch texlive-xunicode-9:20200406-25.el9.noarch texlive-zapfchan-9:20200406-25.el9.noarch texlive-zapfding-9:20200406-25.el9.noarch texlive-zref-9:20200406-25.el9.noarch urw-base35-bookman-fonts-20200910-6.el9.noarch urw-base35-c059-fonts-20200910-6.el9.noarch urw-base35-d050000l-fonts-20200910-6.el9.noarch urw-base35-fonts-20200910-6.el9.noarch urw-base35-fonts-common-20200910-6.el9.noarch urw-base35-gothic-fonts-20200910-6.el9.noarch urw-base35-nimbus-mono-ps-fonts-20200910-6.el9.noarch urw-base35-nimbus-roman-fonts-20200910-6.el9.noarch urw-base35-nimbus-sans-fonts-20200910-6.el9.noarch urw-base35-p052-fonts-20200910-6.el9.noarch urw-base35-standard-symbols-ps-fonts-20200910-6.el9.noarch urw-base35-z003-fonts-20200910-6.el9.noarch vim-filesystem-2:8.2.2637-20.el9_1.noarch xml-common-0.6.3-58.el9.noarch xorg-x11-fonts-ISO8859-1-100dpi-7.5-33.el9.noarch zlib-devel-1.2.11-39.el9.x86_64 zziplib-0.13.71-9.el9.x86_64 Complete! Finish: build setup for apbs-3.0.0-8.el9.src.rpm Start: rpmbuild apbs-3.0.0-8.el9.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1622764800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QIijis + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/apbs-pdb2pqr-vAPBS-3.0.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (apbs-cmake.patch):' Patch #0 (apbs-cmake.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .apbs-cmake --fuzz=0 patching file apbs/CMakeLists.txt patching file apbs/src/CMakeLists.txt patching file apbs/tools/manip/CMakeLists.txt patching file apbs/tools/mesh/CMakeLists.txt + cp -p apbs/contrib/iapbs/COPYING apbs/contrib/iapbs/iapbs-COPYING + cp -p /builddir/build/SOURCES/apbs-LGPL_V2 apbs/contrib/iapbs/iapbs-LGPLv2 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.pm5BBC + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -S apbs -DBUILD_DOC:BOOL=OFF -DCMAKE_BUILD_TYPE:STRING=Release -DENABLE_iAPBS:BOOL=ON -DENABLE_OPENMP:BOOL=ON -DENABLE_VERBOSE_DEBUG:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DENABLE_FETK:BOOL=OFF -DENABLE_PYTHON:BOOL=ON CMake Deprecation Warning at CMakeLists.txt:11 (cmake_policy): The OLD behavior for policy CMP0054 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 11.3.1 -- The CXX compiler identification is GNU 11.3.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Inline functions enabled -- Checking for OpenMP -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP support enabled CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_routines -- External Headers: -- -- APBS Libraries: m;stdc++;maloc;-fopenmp -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- -- -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -- Supplemental tools enabled -- Building mesh -- libraries: apbs -- Building manip -- libraries: apbs -- Found SWIG: /usr/bin/swig (found version "4.0.2") -- Found Python3: /usr/bin/python3.9 (found version "3.9.16") found components: Interpreter Development Development.Module Development.Embed -- ******* Python3 FOUND -- ***** Python3 include path is: /usr/include/python3.9 -- ***** Python3 library path is: /usr/lib64/libpython3.9.so -- ***** Python3 library dir is: /usr/lib64 -- Building of iAPBS interface enabled -- Found Python3: /usr/bin/python3.9 (found version "3.9.16") found components: Interpreter -- ******* Python3 FOUND /usr/bin/python3.9 -- TEST born_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t born -- TEST actin-dimer-auto_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t actin-dimer-auto -- TEST actin-dimer-parallel_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t actin-dimer-parallel -- TEST alkanes_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t alkanes -- TEST FKBP_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t FKBP -- TEST hca-bind_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t hca-bind -- TEST ionize_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t ionize -- TEST ion-pmf_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t ion-pmf -- TEST ion-protein_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t ion-protein -- TEST pka-lig_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t pka-lig -- TEST point-pmf_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t point-pmf -- TEST solv_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t solv -- TEST geoflow_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t geoflow -- TEST bem_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t bem -- TEST bem-pKa_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t bem-pKa -- TEST bem-binding-energy_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t bem-binding-energy -- TEST pbam_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t pbam -- TEST pbsam_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t pbsam -- TEST protein-rna_test COMMAND /usr/bin/python3.9 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/apbs -t protein-rna -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH LIB_SUFFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose /usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend /usr/bin/gmake -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/mg /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 2%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o [ 2%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o -MF CMakeFiles/apbs_mg.dir/vgrid.c.o.d -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -MF CMakeFiles/apbs_generic.dir/nosh.c.o.d -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:816:13: warning: variable 'isBinary' set but not used [-Wunused-but-set-variable] 816 | int isBinary = 0; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:813:25: warning: unused variable 'itmp' [-Wunused-variable] 813 | size_t i, j, k, itmp, u; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_writeUHBD': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:1697:36: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 1697 | double xmin, ymin, zmin, hzed, hy, hx; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:1697:30: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 1697 | double xmin, ymin, zmin, hzed, hy, hx; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:853:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 853 | fgets(tok, VMAX_BUFSIZE, fd); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c: In function 'NOsh_setupCalcGEOFLOWMANUAL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:2683:15: warning: variable 'apolparm' set but not used [-Wunused-but-set-variable] 2683 | APOLparm *apolparm = VNULL; | ^~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: In function 'strncpy', inlined from 'NOsh_parsePBAM' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:3139:3: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parsePBSAM' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:3268:3: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1000 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o -MF CMakeFiles/apbs_mg.dir/vmgrid.c.o.d -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c In function 'strncpy', inlined from 'NOsh_parseAPOLAR' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1348:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:582:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseELEC' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1222:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:577:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MESH' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:953:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1007:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_CHARGE' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:918:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1005:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_POTENTIAL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:872:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1003:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_KAPPA' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:827:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:1001:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:772:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:776:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:780:5, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:999:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:723:13, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:997:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:701:13, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:997:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:659:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:640:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:621:9, inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:995:13, inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:567:18: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c: In function 'Vmgrid_addGrid': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:198:12: warning: unused variable 'tgrad' [-Wunused-variable] 198 | double tgrad[3]; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:15: warning: unused variable 'rc' [-Wunused-variable] 197 | int i, j, rc; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:12: warning: unused variable 'j' [-Wunused-variable] 197 | int i, j, rc; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:9: warning: unused variable 'i' [-Wunused-variable] 197 | int i, j, rc; | ^ [ 4%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o -MF CMakeFiles/apbs_mg.dir/vopot.c.o.d -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c: In function 'Vopot_curvature': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:26: warning: variable 'eps_w' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:18: warning: variable 'charge' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:15: warning: variable 'T' set but not used [-Wunused-but-set-variable] 219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:269:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] 269 | u = u + val; | ~~^~~~~~~~~ [ 5%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o -MF CMakeFiles/apbs_generic.dir/mgparm.c.o.d -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/mgparm.c [ 7%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o -MF CMakeFiles/apbs_mg.dir/vpmg.c.o.d -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:157:61: warning: variable 'zkappa2' set but not used [-Wunused-but-set-variable] 157 | double ionConc[MAXION], ionQ[MAXION], ionRadii[MAXION], zkappa2, zks2; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qmEnergySMPBE': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1503:12: warning: variable 'zks2' set but not used [-Wunused-but-set-variable] 1503 | zks2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qfEnergyPoint': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1712:13: warning: variable 'pvec' set but not used [-Wunused-but-set-variable] 1712 | double *pvec; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:24: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:18: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] 1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qfAtomEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:36: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:24: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] 1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'focusFillBound': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1953:12: warning: variable 'charge' set but not used [-Wunused-but-set-variable] 1953 | charge, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1952:13: warning: variable 'apos' set but not used [-Wunused-but-set-variable] 1952 | *apos, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1951:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 1951 | size, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1950:12: warning: variable 'xkappa' set but not used [-Wunused-but-set-variable] 1950 | xkappa, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] 2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcCalcOrig': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:34: warning: unused variable 'debye' [-Wunused-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:22: warning: variable 'quadrupole' set but not used [-Wunused-but-set-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:13: warning: variable 'dipole' set but not used [-Wunused-but-set-variable] 2832 | double *dipole, *quadrupole, debye, eps_p; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcflnew': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3415:31: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] 3415 | double dist, pre1, eps_w, eps_p, T, xkappa; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:29: warning: unused variable 'z1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:25: warning: unused variable 'z0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:21: warning: unused variable 'y1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:17: warning: unused variable 'y0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:13: warning: unused variable 'x1' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:9: warning: unused variable 'x0' [-Wunused-variable] 3410 | int x0, x1, y0, y1, z0, z1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:13: warning: unused variable 'k' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:11: warning: unused variable 'j' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:9: warning: unused variable 'i' [-Wunused-variable] 3409 | int i,j,k, iatom, igrid; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'multipolebc': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3492:19: warning: variable 'kr3' set but not used [-Wunused-but-set-variable] 3492 | double kr,kr2,kr3; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_sdh': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] 3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3604:22: warning: unused variable 'quadrupole' [-Wunused-variable] 3604 | double *dipole, *quadrupole; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3604:13: warning: unused variable 'dipole' [-Wunused-variable] 3604 | double *dipole, *quadrupole; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_mdh': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3875:41: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] 3875 | double size, charge, xkappa, eps_w, eps_p, T, pre1, dist; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3874:22: warning: unused variable 'quadrupole' [-Wunused-variable] 3874 | double *dipole, *quadrupole; | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3874:13: warning: unused variable 'dipole' [-Wunused-variable] 3874 | double *dipole, *quadrupole; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_mem': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4008:24: warning: unused variable 'edge_L' [-Wunused-variable] 4008 | double A, B, C, D, edge_L, l; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4007:38: warning: unused variable 'z_shift' [-Wunused-variable] 4007 | double dist, val, z_low, z_high, z_shift; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4007:12: warning: unused variable 'dist' [-Wunused-variable] 4007 | double dist, val, z_low, z_high, z_shift; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_map': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:38: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:34: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:30: warning: variable 'hx' set but not used [-Wunused-but-set-variable] 4177 | double position[3], pot, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4176:11: warning: unused variable 'pbe' [-Wunused-variable] 4176 | Vpbe *pbe; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4492:46: warning: unused variable 'pot' [-Wunused-variable] 4492 | double ionstr, position[3], tkappa, eps, pot, hx, hy, hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolIon': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4638:16: warning: variable 'surfMeth' set but not used [-Wunused-but-set-variable] 4638 | Vsurf_Meth surfMeth; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4630:11: warning: variable 'acc' set but not used [-Wunused-but-set-variable] 4630 | Vacc *acc; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolDielNoSmooth': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4746:30: warning: unused variable 'deps' [-Wunused-variable] 4746 | double srad, epsw, epsp, deps, area; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5031:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 5031 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin, w3i; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCharge': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5289:15: warning: unused variable 'rc' [-Wunused-variable] 5289 | Vrc_Codes rc; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoChargeMap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:49: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:45: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:41: warning: variable 'hx' set but not used [-Wunused-but-set-variable] 5346 | double position[3], charge, zmagic, hx, hy, hzed; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_force': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5829:12: warning: unused variable 'npF' [-Wunused-variable] 5829 | double npF[3]; /* Non-polar boundary force */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_ibForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5848:13: warning: variable 'alist' set but not used [-Wunused-but-set-variable] 5848 | Valist *alist; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_dbForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6019:55: warning: variable 'kT' set but not used [-Wunused-but-set-variable] 6019 | double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6019:18: warning: variable 'dx' set but not used [-Wunused-but-set-variable] 6019 | double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:66: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'qfForceSpline2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'qfForceSpline4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6576:15: warning: unused variable 'k' [-Wunused-variable] 6576 | int i, j, k, ii, jj, kk; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6576:12: warning: unused variable 'j' [-Wunused-variable] 6576 | int i, j, k, ii, jj, kk; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] 6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'markFrac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6692:39: warning: variable 'a000' set but not used [-Wunused-but-set-variable] 6692 | double dx, dx2, dy, dy2, dz, dz2, a000, a001, a010, a100, r2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'zlapSolve': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6912:12: warning: unused variable 'norm' [-Wunused-variable] 6912 | double norm, coef, proj, eigx, eigy, eigz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_solveLaplace': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7044:35: warning: variable 'n' set but not used [-Wunused-but-set-variable] 7044 | int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7044:18: warning: unused variable 'ijk' [-Wunused-variable] 7044 | int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoPermanentMultipole': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:58: warning: unused variable 'mqzz' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:53: warning: unused variable 'mqzy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:48: warning: unused variable 'mqzx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:43: warning: unused variable 'mqyy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:38: warning: unused variable 'mqyx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:33: warning: unused variable 'mqxx' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:29: warning: unused variable 'muz' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:25: warning: unused variable 'muy' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:21: warning: unused variable 'mux' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:18: warning: unused variable 'mc' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:12: warning: unused variable 'debye' [-Wunused-variable] 7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:24: warning: unused variable 'mr2' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:20: warning: unused variable 'mkr' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:16: warning: unused variable 'mjr' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:12: warning: unused variable 'mir' [-Wunused-variable] 7262 | double mir,mjr,mkr,mr2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7258:9: warning: unused variable 'i' [-Wunused-variable] 7258 | int i, ii, jj, kk, nx, ny, nz, iatom; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7253:47: warning: unused variable 'qave' [-Wunused-variable] 7253 | double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7252:29: warning: unused variable 'quad' [-Wunused-variable] 7252 | double charge, *dipole,*quad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7252:21: warning: unused variable 'dipole' [-Wunused-variable] 7252 | double charge, *dipole,*quad; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:9948:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 9948 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:9946:42: warning: unused variable 'w2i' [-Wunused-variable] 9946 | double irad, dx, dy, dz, epsw, epsp, w2i; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoPermanentInduced': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10278:9: warning: unused variable 'i' [-Wunused-variable] 10278 | int i, ii, jj, kk, nx, ny, nz, iatom; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10273:47: warning: unused variable 'qave' [-Wunused-variable] 10273 | double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10272:29: warning: unused variable 'quad' [-Wunused-variable] 10272 | double charge, *dipole,*quad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10272:21: warning: unused variable 'dipole' [-Wunused-variable] 10272 | double charge, *dipole,*quad; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10441:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] 10441 | double e, e2, e3, e4, e5; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10439:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] 10439 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10437:42: warning: unused variable 'w2i' [-Wunused-variable] 10437 | double irad, dx, dy, dz, epsw, epsp, w2i; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:55: warning: variable 'mxlv' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:47: warning: unused variable 'maxlev' [-Wunused-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:39: warning: unused variable 'ierror' [-Wunused-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:15: warning: variable 'niwk' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:9: warning: variable 'nrwk' set but not used [-Wunused-but-set-variable] 10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:29: warning: unused variable 'i' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:21: warning: unused variable 'nnzero' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:15: warning: unused variable 'ncol' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:9: warning: unused variable 'nrow' [-Wunused-variable] 10743 | int nrow, ncol, nnzero, i; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10804:5: note: in expansion of macro 'MAT2' 10804 | MAT2(iz, 50, nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10836:5: note: in expansion of macro 'MAT2' 10836 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10874:5: note: in expansion of macro 'MAT3' 10874 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10873:5: note: in expansion of macro 'MAT3' 10873 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10872:5: note: in expansion of macro 'MAT3' 10872 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10871:5: note: in expansion of macro 'MAT3' 10871 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10870:5: note: in expansion of macro 'MAT3' 10870 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10866:27: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] 10866 | int inonz, iirow, nn, nrow, ncol, nonz, irow, n; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7229:16: warning: 'd3bspline4' defined but not used [-Wunused-function] 7229 | VPUBLIC double d3bspline4(double x) { | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6684:15: warning: 'markFrac' defined but not used [-Wunused-function] 6684 | VPRIVATE void markFrac( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3868:15: warning: 'bcfl_mdh' defined but not used [-Wunused-function] 3868 | VPRIVATE void bcfl_mdh(Vpmg *thee){ | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2828:15: warning: 'bcCalcOrig' defined but not used [-Wunused-function] 2828 | VPRIVATE void bcCalcOrig(Vpmg *thee) { | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2547:17: warning: 'bcfl1sp' defined but not used [-Wunused-function] 2547 | VPRIVATE double bcfl1sp(double size, double *apos, double charge, | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1148:17: warning: 'Vpmg_polarizEnergy' defined but not used [-Wunused-function] 1148 | VPRIVATE double Vpmg_polarizEnergy(Vpmg *thee, | ^~~~~~~~~~~~~~~~~~ [ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -MF CMakeFiles/apbs_generic.dir/femparm.c.o.d -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/femparm.c [ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o -MF CMakeFiles/apbs_generic.dir/pbamparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parseRandorient': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:305:17: warning: unused variable 'name' [-Wunused-variable] 305 | const char* name = "randorient"; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parse3Dmap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:373:10: warning: unused variable 'tok' [-Wunused-variable] 373 | char tok[VMAX_BUFSIZE]; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:372:17: warning: unused variable 'name' [-Wunused-variable] 372 | const char* name = "3dmap"; | ^~~~ In file included from /usr/include/string.h:519, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:68, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:57: In function 'strncpy', inlined from 'PBAMparm_parseRunType' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:282:7: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseRunName' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:297:7: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseUnits' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:344:7: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTermcombine' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:452:7: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:400:7: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:408:7: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseXYZ' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:656:8: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseDiff' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:500:8: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:563:9: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:573:11: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o -MF CMakeFiles/apbs_generic.dir/pbsamparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_parseMSMS': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:183:13: warning: unused variable 'td' [-Wunused-variable] 183 | int td; | ^~ In file included from /usr/include/string.h:519, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:68, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:57: In function 'strncpy', inlined from 'PBSAMparm_parseSurf' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:174:8: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBSAMparm_parseImat' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:211:8: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBSAMparm_parseExp' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:226:8: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -MF CMakeFiles/apbs_generic.dir/pbeparm.c.o.d -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c In file included from /usr/include/string.h:519, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c:57: In function 'strncpy', inlined from 'PBEparm_parseWRITE' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c:1163:9: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'PBEparm_parseWRITEMAT' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c:1204:5: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o -MF CMakeFiles/apbs_generic.dir/bemparm.c.o.d -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_check': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:36: warning: unused variable 'nlev' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:26: warning: unused variable 'tnlev' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:22: warning: unused variable 'ti' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:12: warning: unused variable 'tdime' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:9: warning: unused variable 'i' [-Wunused-variable] 127 | int i, tdime[3], ti, tnlev[3], nlev; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_copy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:176:9: warning: unused variable 'i' [-Wunused-variable] 176 | int i; | ^ [ 14%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o -MF CMakeFiles/apbs_generic.dir/geoflowparm.c.o.d -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c: In function 'GEOFLOWparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] 79 | int i; | ^ [ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o -MF CMakeFiles/apbs_generic.dir/apolparm.c.o.d -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/apolparm.c [ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -MF CMakeFiles/apbs_generic.dir/vacc.c.o.d -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'VaccSurf_dtor': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:841:11: warning: variable 'mem' set but not used [-Wunused-but-set-variable] 841 | Vmem *mem; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_splineAccGradAtomNorm3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1104:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] 1104 | double e, e2, e3, e4, e5; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_atomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1338:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] 1338 | time_t ts; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1335:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1335 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1395:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1395 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1392:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] 1392 | double *temp_Pos, tRad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1391:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] 1391 | int iatom; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSAV': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1454:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] 1454 | VaccSurf *ref; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1451:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] 1451 | double *temp_Pos, tRad; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1450:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] 1450 | int iatom; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_wcaEnergyAtom': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1584:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] 1584 | int npts[3]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_wcaForceAtom': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1807:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] 1807 | time_t ts; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1764:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] 1764 | npts[3], | ^~~~ [ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/valist.c.o -MF CMakeFiles/apbs_generic.dir/valist.c.o.d -o CMakeFiles/apbs_generic.dir/valist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c: In function 'Valist_readPQR': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:618:10: warning: unused variable 'chs' [-Wunused-variable] 618 | char chs[VMAX_BUFSIZE]; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c: In function 'Valist_readXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:834:17: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] 834 | Vatom_setRadius(nextAtom, radius); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:833:17: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized] 833 | Vatom_setCharge(nextAtom, charge); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:48: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:36: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:24: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] 831 | pos[0] = x; pos[1] = y; pos[2] = z; | ~~~~~~~^~~ [ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o -MF CMakeFiles/apbs_generic.dir/vatom.c.o.d -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vatom.c [ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o -MF CMakeFiles/apbs_generic.dir/vpbe.c.o.d -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vpbe.c [ 21%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o -MF CMakeFiles/apbs_generic.dir/vcap.c.o.d -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vcap.c [ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o -MF CMakeFiles/apbs_generic.dir/vclist.c.o.d -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vclist.c [ 23%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/mg && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o -MF CMakeFiles/apbs_mg.dir/vpmgp.c.o.d -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c: In function 'Vpmgp_size': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c:204:87: warning: unused variable 'iretot' [-Wunused-variable] 204 | int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot; | ^~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 23%] Built target apbs_mg /usr/bin/gmake -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 24%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildAd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c: In function 'VbuildA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:66:5: note: in expansion of macro 'MAT2' 66 | MAT2(ac, *nx * *ny * *nz, 14); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c: In function 'VbuildA_fv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:167:5: note: in expansion of macro 'MAT3' 167 | MAT3(gzcf, *nx, *ny, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:166:5: note: in expansion of macro 'MAT3' 166 | MAT3(gycf, *nx, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:165:5: note: in expansion of macro 'MAT3' 165 | MAT3(gxcf, *ny, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:164:5: note: in expansion of macro 'MAT3' 164 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:163:5: note: in expansion of macro 'MAT3' 163 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:162:5: note: in expansion of macro 'MAT3' 162 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:161:5: note: in expansion of macro 'MAT3' 161 | MAT3(a3cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:160:5: note: in expansion of macro 'MAT3' 160 | MAT3(a2cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:159:5: note: in expansion of macro 'MAT3' 159 | MAT3(a1cf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:158:5: note: in expansion of macro 'MAT3' 158 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3( ccf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:156:5: note: in expansion of macro 'MAT3' 156 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:155:5: note: in expansion of macro 'MAT3' 155 | MAT3( fcf, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:154:5: note: in expansion of macro 'MAT3' 154 | MAT3( fc, *nx, *ny, *nz); | ^~~~ [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o -MF CMakeFiles/apbs_generic.dir/vstring.c.o.d -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vstring.c [ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o -MF CMakeFiles/apbs_generic.dir/vparam.c.o.d -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c [ 28%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildBd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:65:5: note: in expansion of macro 'MAT2' 65 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:133:5: note: in expansion of macro 'MAT3' 133 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:132:5: note: in expansion of macro 'MAT3' 132 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:131:5: note: in expansion of macro 'MAT3' 131 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:130:5: note: in expansion of macro 'MAT3' 130 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:128:5: note: in expansion of macro 'MAT2' 128 | MAT2(acB, *lda, *ny-1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:213:5: note: in expansion of macro 'MAT3' 213 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:212:5: note: in expansion of macro 'MAT3' 212 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:211:5: note: in expansion of macro 'MAT3' 211 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:210:5: note: in expansion of macro 'MAT3' 210 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:207:5: note: in expansion of macro 'MAT3' 207 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:200:5: note: in expansion of macro 'MAT3' 200 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:197:5: note: in expansion of macro 'MAT3' 197 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:195:5: note: in expansion of macro 'MAT2' 195 | MAT2(acB, *lda, *ny-1); | ^~~~ [ 29%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildGd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c: In function 'Vparam_readXMLFile': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c:389:69: warning: 'nalloc' may be used uninitialized in this function [-Wmaybe-uninitialized] 389 | tatoms = (Vparam_AtomData*)Vmem_malloc(thee->vmem, 2*nalloc, sizeof(Vparam_AtomData)); | ~^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c:309:18: warning: 'natoms' may be used uninitialized in this function [-Wmaybe-uninitialized] 309 | int i, ires, natoms, nalloc, ralloc; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:64:5: note: in expansion of macro 'MAT2' 64 | MAT2( ac, *nxc * *nyc * *nzc, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acFF' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:63:5: note: in expansion of macro 'MAT2' 63 | MAT2(acFF, *nxf * *nyf * *nzf, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pcFF' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:62:5: note: in expansion of macro 'MAT2' 62 | MAT2(pcFF, *nxc * *nyc * *nzc, 27); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_1': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:216:5: note: in expansion of macro 'MAT3' 216 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:215:5: note: in expansion of macro 'MAT3' 215 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:214:5: note: in expansion of macro 'MAT3' 214 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:213:5: note: in expansion of macro 'MAT3' 213 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:212:5: note: in expansion of macro 'MAT3' 212 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:211:5: note: in expansion of macro 'MAT3' 211 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:210:5: note: in expansion of macro 'MAT3' 210 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:209:5: note: in expansion of macro 'MAT3' 209 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:204:5: note: in expansion of macro 'MAT3' 204 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:201:5: note: in expansion of macro 'MAT3' 201 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:200:5: note: in expansion of macro 'MAT3' 200 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:196:5: note: in expansion of macro 'MAT3' 196 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:195:5: note: in expansion of macro 'MAT3' 195 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:194:5: note: in expansion of macro 'MAT3' 194 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:193:5: note: in expansion of macro 'MAT3' 193 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:192:5: note: in expansion of macro 'MAT3' 192 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:188:5: note: in expansion of macro 'MAT3' 188 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:185:5: note: in expansion of macro 'MAT3' 185 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:184:5: note: in expansion of macro 'MAT3' 184 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:183:5: note: in expansion of macro 'MAT3' 183 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:182:5: note: in expansion of macro 'MAT3' 182 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:180:5: note: in expansion of macro 'MAT3' 180 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:179:5: note: in expansion of macro 'MAT3' 179 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:177:5: note: in expansion of macro 'MAT3' 177 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:176:5: note: in expansion of macro 'MAT3' 176 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:174:5: note: in expansion of macro 'MAT3' 174 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:172:5: note: in expansion of macro 'MAT3' 172 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:171:5: note: in expansion of macro 'MAT3' 171 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:170:5: note: in expansion of macro 'MAT3' 170 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:168:5: note: in expansion of macro 'MAT3' 168 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 164 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 164 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 164 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:163:33: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 163 | int iim1, iip1, jjm1, jjp1, kkm1, kkp1; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:532:5: note: in expansion of macro 'MAT3' 532 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:531:5: note: in expansion of macro 'MAT3' 531 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:530:5: note: in expansion of macro 'MAT3' 530 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:529:5: note: in expansion of macro 'MAT3' 529 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:528:5: note: in expansion of macro 'MAT3' 528 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:527:5: note: in expansion of macro 'MAT3' 527 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:526:5: note: in expansion of macro 'MAT3' 526 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:525:5: note: in expansion of macro 'MAT3' 525 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:524:5: note: in expansion of macro 'MAT3' 524 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:522:5: note: in expansion of macro 'MAT3' 522 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:521:5: note: in expansion of macro 'MAT3' 521 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:520:5: note: in expansion of macro 'MAT3' 520 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:519:5: note: in expansion of macro 'MAT3' 519 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:518:5: note: in expansion of macro 'MAT3' 518 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:517:5: note: in expansion of macro 'MAT3' 517 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:516:5: note: in expansion of macro 'MAT3' 516 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:515:5: note: in expansion of macro 'MAT3' 515 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:514:5: note: in expansion of macro 'MAT3' 514 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:512:5: note: in expansion of macro 'MAT3' 512 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:511:5: note: in expansion of macro 'MAT3' 511 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:510:5: note: in expansion of macro 'MAT3' 510 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:509:5: note: in expansion of macro 'MAT3' 509 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:508:5: note: in expansion of macro 'MAT3' 508 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:507:5: note: in expansion of macro 'MAT3' 507 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:506:5: note: in expansion of macro 'MAT3' 506 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:505:5: note: in expansion of macro 'MAT3' 505 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:504:5: note: in expansion of macro 'MAT3' 504 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:502:5: note: in expansion of macro 'MAT3' 502 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:501:5: note: in expansion of macro 'MAT3' 501 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:500:5: note: in expansion of macro 'MAT3' 500 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:499:5: note: in expansion of macro 'MAT3' 499 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:498:5: note: in expansion of macro 'MAT3' 498 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:497:5: note: in expansion of macro 'MAT3' 497 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:496:5: note: in expansion of macro 'MAT3' 496 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:495:5: note: in expansion of macro 'MAT3' 495 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:494:5: note: in expansion of macro 'MAT3' 494 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:492:5: note: in expansion of macro 'MAT3' 492 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:491:5: note: in expansion of macro 'MAT3' 491 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:490:5: note: in expansion of macro 'MAT3' 490 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:489:5: note: in expansion of macro 'MAT3' 489 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:488:5: note: in expansion of macro 'MAT3' 488 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:486:5: note: in expansion of macro 'MAT3' 486 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:484:5: note: in expansion of macro 'MAT3' 484 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:483:5: note: in expansion of macro 'MAT3' 483 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:482:5: note: in expansion of macro 'MAT3' 482 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 473 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 473 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 473 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:472:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 472 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:469:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 469 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:469:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 469 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:468:28: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 468 | int jm1, jp1, jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:467:28: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 467 | int im1, ip1, im2, ip2; | ^~~ [ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/generic && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o -MF CMakeFiles/apbs_generic.dir/vgreen.c.o.d -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1380:5: note: in expansion of macro 'MAT3' 1380 | MAT3(dPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1379:5: note: in expansion of macro 'MAT3' 1379 | MAT3(dPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1378:5: note: in expansion of macro 'MAT3' 1378 | MAT3(dPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1377:5: note: in expansion of macro 'MAT3' 1377 | MAT3(dPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1376:5: note: in expansion of macro 'MAT3' 1376 | MAT3( dPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1375:5: note: in expansion of macro 'MAT3' 1375 | MAT3( dPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1374:5: note: in expansion of macro 'MAT3' 1374 | MAT3( dPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1373:5: note: in expansion of macro 'MAT3' 1373 | MAT3( dPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1372:5: note: in expansion of macro 'MAT3' 1372 | MAT3( dPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1370:5: note: in expansion of macro 'MAT3' 1370 | MAT3(uPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1369:5: note: in expansion of macro 'MAT3' 1369 | MAT3(uPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1368:5: note: in expansion of macro 'MAT3' 1368 | MAT3(uPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1367:5: note: in expansion of macro 'MAT3' 1367 | MAT3(uPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1366:5: note: in expansion of macro 'MAT3' 1366 | MAT3( uPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1365:5: note: in expansion of macro 'MAT3' 1365 | MAT3( uPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1364:5: note: in expansion of macro 'MAT3' 1364 | MAT3( uPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1363:5: note: in expansion of macro 'MAT3' 1363 | MAT3( uPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1362:5: note: in expansion of macro 'MAT3' 1362 | MAT3( uPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1360:5: note: in expansion of macro 'MAT3' 1360 | MAT3(oPSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1359:5: note: in expansion of macro 'MAT3' 1359 | MAT3(oPSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1358:5: note: in expansion of macro 'MAT3' 1358 | MAT3(oPNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1357:5: note: in expansion of macro 'MAT3' 1357 | MAT3(oPNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1356:5: note: in expansion of macro 'MAT3' 1356 | MAT3( oPW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1355:5: note: in expansion of macro 'MAT3' 1355 | MAT3( oPE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1354:5: note: in expansion of macro 'MAT3' 1354 | MAT3( oPS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1353:5: note: in expansion of macro 'MAT3' 1353 | MAT3( oPN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1352:5: note: in expansion of macro 'MAT3' 1352 | MAT3( oPC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1350:5: note: in expansion of macro 'MAT3' 1350 | MAT3(XuSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1349:5: note: in expansion of macro 'MAT3' 1349 | MAT3(XuSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1348:5: note: in expansion of macro 'MAT3' 1348 | MAT3(XuNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1347:5: note: in expansion of macro 'MAT3' 1347 | MAT3(XuNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1346:5: note: in expansion of macro 'MAT3' 1346 | MAT3( XuS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1345:5: note: in expansion of macro 'MAT3' 1345 | MAT3( XuN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1344:5: note: in expansion of macro 'MAT3' 1344 | MAT3( XuW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1343:5: note: in expansion of macro 'MAT3' 1343 | MAT3( XuE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1342:5: note: in expansion of macro 'MAT3' 1342 | MAT3( XuC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1340:5: note: in expansion of macro 'MAT3' 1340 | MAT3(XoNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1339:5: note: in expansion of macro 'MAT3' 1339 | MAT3(XoNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1338:5: note: in expansion of macro 'MAT3' 1338 | MAT3( XoN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1337:5: note: in expansion of macro 'MAT3' 1337 | MAT3( XoE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1336:5: note: in expansion of macro 'MAT3' 1336 | MAT3( XoC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1334:5: note: in expansion of macro 'MAT3' 1334 | MAT3( uSW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1333:5: note: in expansion of macro 'MAT3' 1333 | MAT3( uSE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1332:5: note: in expansion of macro 'MAT3' 1332 | MAT3( uNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1331:5: note: in expansion of macro 'MAT3' 1331 | MAT3( uNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1330:5: note: in expansion of macro 'MAT3' 1330 | MAT3( uS, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1329:5: note: in expansion of macro 'MAT3' 1329 | MAT3( uN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1328:5: note: in expansion of macro 'MAT3' 1328 | MAT3( uW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1327:5: note: in expansion of macro 'MAT3' 1327 | MAT3( uE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1326:5: note: in expansion of macro 'MAT3' 1326 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1324:5: note: in expansion of macro 'MAT3' 1324 | MAT3( oNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1323:5: note: in expansion of macro 'MAT3' 1323 | MAT3( oNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1322:5: note: in expansion of macro 'MAT3' 1322 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1321:5: note: in expansion of macro 'MAT3' 1321 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1320:5: note: in expansion of macro 'MAT3' 1320 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] 1277 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] 1277 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] 1277 | int nxm1, nym1, nzm1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1276:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 1276 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1273:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 1273 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1273:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 1273 | int km1, kp1, km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb_direct': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:31: warning: unused variable 'fz' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:27: warning: unused variable 'fy' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:23: warning: unused variable 'fx' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:16: warning: unused variable 'qtemp' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:13: warning: unused variable 'q' [-Wunused-variable] 229 | double *q, qtemp, fx, fy, fz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:264:9: warning: unused variable 'iatom' [-Wunused-variable] 264 | int iatom, ipos; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:31: warning: unused variable 'fz' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:27: warning: unused variable 'fy' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:23: warning: unused variable 'fx' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:16: warning: unused variable 'qtemp' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:13: warning: unused variable 'q' [-Wunused-variable] 263 | double *q, qtemp, fx, fy, fz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:45: warning: unused variable 'scale' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:41: warning: unused variable 'dz' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:37: warning: unused variable 'dy' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:33: warning: unused variable 'dx' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:27: warning: unused variable 'dist' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:19: warning: unused variable 'charge' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:13: warning: unused variable 'apos' [-Wunused-variable] 262 | double *apos, charge, dist, dx, dy, dz, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:261:12: warning: unused variable 'atom' [-Wunused-variable] 261 | Vatom *atom; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD_direct': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:316:16: warning: unused variable 'qtemp' [-Wunused-variable] 316 | double *q, qtemp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:316:13: warning: unused variable 'q' [-Wunused-variable] 316 | double *q, qtemp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:368:9: warning: unused variable 'iatom' [-Wunused-variable] 368 | int iatom, ipos; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:367:16: warning: unused variable 'qtemp' [-Wunused-variable] 367 | double *q, qtemp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:367:13: warning: unused variable 'q' [-Wunused-variable] 367 | double *q, qtemp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:60: warning: unused variable 'scale' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:56: warning: unused variable 'dx' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:52: warning: unused variable 'dz' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:48: warning: unused variable 'dy' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:40: warning: unused variable 'idist3' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:33: warning: unused variable 'dist2' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:27: warning: unused variable 'dist' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:19: warning: unused variable 'charge' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:13: warning: unused variable 'apos' [-Wunused-variable] 366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:365:12: warning: unused variable 'atom' [-Wunused-variable] 365 | Vatom *atom; | ^~~~ At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:525:14: warning: 'treecalc' defined but not used [-Wunused-function] 525 | VPRIVATE int treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:505:14: warning: 'treecleanup' defined but not used [-Wunused-function] 505 | VPRIVATE int treecleanup(Vgreen *thee) { | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:425:14: warning: 'treesetup' defined but not used [-Wunused-function] 425 | VPRIVATE int treesetup(Vgreen *thee) { | ^~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 30%] Built target apbs_generic /usr/bin/gmake -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 31%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/CMakeFiles/apbs_routines.dir/routines.c.o -MF CMakeFiles/apbs_routines.dir/routines.c.o.d -o CMakeFiles/apbs_routines.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 296 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 298 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 331 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 333 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 420 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 422 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 454 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 456 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] 1234 | iparm, | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] 1584 | MGparm *mgparm; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] 1803 | char mxtype[3]; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] 3485 | scalar, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 3484 | double temp, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] 4496 | sav, /**< @todo document */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] 4495 | double sasa, /**< @todo document */ | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable] 4489 | time_t ts; /**< Temporary timing variable for debugging (PCE) */ | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable] 4753 | *apos; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable] 4737 | time_t ts, ts_main, ts_sub; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG.part.0': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataMG.part.0': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2720 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2711 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2687 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2701 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2666 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2105:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2105 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2363:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2363 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2778:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2778 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2839:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2839 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2904:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2904 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2970:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2970 | gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2971 | (apolparm->press*apolparm->sav) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2972 | (apolparm->wcaEnergy))); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4547:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized] 4547 | disp[0] = (x - center[0]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4516:12: note: 'center' declared here 4516 | center[3], /**< @todo document */ | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4548:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized] 4548 | disp[1] = (y - center[1]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4516:12: note: 'center' declared here 4516 | center[3], /**< @todo document */ | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4549:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized] 4549 | disp[2] = (z - center[2]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4516:12: note: 'center' declared here 4516 | center[3], /**< @todo document */ | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=] 4590 | atomData = Vparam_getAtomData(param, "WAT", "OW"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: note: referencing argument 2 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: note: referencing argument 3 of type 'char *' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/apolparm.h:73, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:73, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData' 304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=] 4591 | if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: note: referencing argument 2 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: note: referencing argument 3 of type 'char *' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/apolparm.h:73, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:73, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData' 304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee, | ^~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 31%] Built target apbs_routines /usr/bin/gmake -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Scanning dependencies of target apbslib_swig_compilation gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 32%] Swig compile apbslib.i for python cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python && /usr/bin/cmake -E make_directory /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python && /usr/bin/cmake -E touch /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig/4.0.2 /usr/bin/swig -python -outdir /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python -interface _apbslib -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/usr/include/python3.9 -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python -o /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/apbslib.i gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 32%] Built target apbslib_swig_compilation /usr/bin/gmake -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 34%] Building C object contrib/iapbs/src/CMakeFiles/iapbs.dir/apbs_driver.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/contrib/iapbs/src && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT contrib/iapbs/src/CMakeFiles/iapbs.dir/apbs_driver.c.o -MF CMakeFiles/iapbs.dir/apbs_driver.c.o.d -o CMakeFiles/iapbs.dir/apbs_driver.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:57:21: warning: argument 23 of type 'double[1]' with mismatched bound [-Warray-parameter=] 57 | double esenergy[1], | ~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.h:173:30: note: previously declared as 'double[20]' 173 | double esEnergy[NOSH_MAXCALC], | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:58:21: warning: argument 24 of type 'double[1]' with mismatched bound [-Warray-parameter=] 58 | double npenergy[1], | ~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.h:174:30: note: previously declared as 'double[20]' 174 | double npEnergy[NOSH_MAXCALC], | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:278:5: warning: multi-line comment [-Wcomment] 278 | // Vnm_print(1,"\nError you must provide a parameter file if you\n" \ | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:110:21: warning: unused variable 'isolve' [-Wunused-variable] 110 | int rank, size, isolve, debug, natom; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:98:11: warning: unused variable 'gm' [-Wunused-variable] 98 | void *gm[NOSH_MAXMOL]; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:97:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable] 97 | void *fetk[NOSH_MAXCALC]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:85:14: warning: unused variable 'feparm' [-Wunused-variable] 85 | FEMparm *feparm = VNULL; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'setupString': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:938:64: warning: implicit declaration of function 'getpid' [-Wimplicit-function-declaration] 938 | sprintf(string, "%swrite pot dx iapbs-pot-%d\n", string, getpid()); | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'getElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:1055:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 1055 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:549:56: warning: 'outputformat' may be used uninitialized [-Wmaybe-uninitialized] 549 | if ((pbeparm->calcenergy == PCE_COMPS) && (outputformat != OUTPUT_NULL)){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Linking C static library ../../../lib/libiapbs.a cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/contrib/iapbs/src && /usr/bin/cmake -P CMakeFiles/iapbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/contrib/iapbs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/iapbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libiapbs.a CMakeFiles/iapbs.dir/apbs_driver.c.o /usr/bin/ranlib ../../../lib/libiapbs.a gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 35%] Built target iapbs [ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o -MF CMakeFiles/apbs_pmgc.dir/buildPd.c.o.d -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:67:5: note: in expansion of macro 'MAT2' 67 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:66:5: note: in expansion of macro 'MAT2' 66 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_trilin': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:101:5: note: in expansion of macro 'MAT2' 101 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_trilin': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:163:5: note: in expansion of macro 'MAT3' 163 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:162:5: note: in expansion of macro 'MAT3' 162 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:161:5: note: in expansion of macro 'MAT3' 161 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:160:5: note: in expansion of macro 'MAT3' 160 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:158:5: note: in expansion of macro 'MAT3' 158 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:156:5: note: in expansion of macro 'MAT3' 156 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:155:5: note: in expansion of macro 'MAT3' 155 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:154:5: note: in expansion of macro 'MAT3' 154 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:152:5: note: in expansion of macro 'MAT3' 152 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:151:5: note: in expansion of macro 'MAT3' 151 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:150:5: note: in expansion of macro 'MAT3' 150 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:149:5: note: in expansion of macro 'MAT3' 149 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:147:5: note: in expansion of macro 'MAT3' 147 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:146:5: note: in expansion of macro 'MAT3' 146 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:145:5: note: in expansion of macro 'MAT3' 145 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:144:5: note: in expansion of macro 'MAT3' 144 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:143:5: note: in expansion of macro 'MAT3' 143 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:141:5: note: in expansion of macro 'MAT3' 141 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:140:5: note: in expansion of macro 'MAT3' 140 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:139:5: note: in expansion of macro 'MAT3' 139 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:138:5: note: in expansion of macro 'MAT3' 138 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:136:5: note: in expansion of macro 'MAT3' 136 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:135:5: note: in expansion of macro 'MAT3' 135 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:134:5: note: in expansion of macro 'MAT3' 134 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:133:5: note: in expansion of macro 'MAT3' 133 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:132:5: note: in expansion of macro 'MAT3' 132 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:212:5: note: in expansion of macro 'MAT2' 212 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:211:5: note: in expansion of macro 'MAT2' 211 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:287:5: note: in expansion of macro 'MAT3' 287 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:286:5: note: in expansion of macro 'MAT3' 286 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:285:5: note: in expansion of macro 'MAT3' 285 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:284:5: note: in expansion of macro 'MAT3' 284 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:283:5: note: in expansion of macro 'MAT3' 283 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:282:5: note: in expansion of macro 'MAT3' 282 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:281:5: note: in expansion of macro 'MAT3' 281 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:280:5: note: in expansion of macro 'MAT3' 280 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:279:5: note: in expansion of macro 'MAT3' 279 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:278:5: note: in expansion of macro 'MAT3' 278 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:277:5: note: in expansion of macro 'MAT3' 277 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:276:5: note: in expansion of macro 'MAT3' 276 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:275:5: note: in expansion of macro 'MAT3' 275 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:274:5: note: in expansion of macro 'MAT3' 274 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:273:5: note: in expansion of macro 'MAT3' 273 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:272:5: note: in expansion of macro 'MAT3' 272 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:271:5: note: in expansion of macro 'MAT3' 271 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:270:5: note: in expansion of macro 'MAT3' 270 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:269:5: note: in expansion of macro 'MAT3' 269 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:268:5: note: in expansion of macro 'MAT3' 268 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:267:5: note: in expansion of macro 'MAT3' 267 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:266:5: note: in expansion of macro 'MAT3' 266 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:265:5: note: in expansion of macro 'MAT3' 265 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:264:5: note: in expansion of macro 'MAT3' 264 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:263:5: note: in expansion of macro 'MAT3' 263 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:262:5: note: in expansion of macro 'MAT3' 262 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:261:5: note: in expansion of macro 'MAT3' 261 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:260:5: note: in expansion of macro 'MAT3' 260 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:259:5: note: in expansion of macro 'MAT3' 259 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:258:5: note: in expansion of macro 'MAT3' 258 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:257:5: note: in expansion of macro 'MAT3' 257 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:32: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:23: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:17: warning: variable 'half' set but not used [-Wunused-but-set-variable] 255 | double won, half, quarter, eighth; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:253:15: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] 253 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:253:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 253 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:252:15: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] 252 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:252:9: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] 252 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:251:15: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] 251 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:251:9: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] 251 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:250:16: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 250 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:250:10: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 250 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:248:16: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 248 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:248:10: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] 248 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:246:16: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 246 | int im2, ip2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:246:10: warning: variable 'im2' set but not used [-Wunused-but-set-variable] 246 | int im2, ip2; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:728:5: note: in expansion of macro 'MAT2' 728 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:727:5: note: in expansion of macro 'MAT2' 727 | MAT2(ac, *nxf * *nyf * *nzf, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:818:7: note: in expansion of macro 'MAT3' 818 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:817:7: note: in expansion of macro 'MAT3' 817 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:816:7: note: in expansion of macro 'MAT3' 816 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:815:7: note: in expansion of macro 'MAT3' 815 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:814:7: note: in expansion of macro 'MAT3' 814 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:813:7: note: in expansion of macro 'MAT3' 813 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:812:7: note: in expansion of macro 'MAT3' 812 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:811:7: note: in expansion of macro 'MAT3' 811 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:810:7: note: in expansion of macro 'MAT3' 810 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:809:7: note: in expansion of macro 'MAT3' 809 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:808:7: note: in expansion of macro 'MAT3' 808 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:807:7: note: in expansion of macro 'MAT3' 807 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:806:7: note: in expansion of macro 'MAT3' 806 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:805:7: note: in expansion of macro 'MAT3' 805 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:804:7: note: in expansion of macro 'MAT3' 804 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:803:7: note: in expansion of macro 'MAT3' 803 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:802:7: note: in expansion of macro 'MAT3' 802 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:801:7: note: in expansion of macro 'MAT3' 801 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:800:7: note: in expansion of macro 'MAT3' 800 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:799:7: note: in expansion of macro 'MAT3' 799 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:798:7: note: in expansion of macro 'MAT3' 798 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:797:7: note: in expansion of macro 'MAT3' 797 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:796:7: note: in expansion of macro 'MAT3' 796 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:795:7: note: in expansion of macro 'MAT3' 795 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:794:7: note: in expansion of macro 'MAT3' 794 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:793:7: note: in expansion of macro 'MAT3' 793 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:792:7: note: in expansion of macro 'MAT3' 792 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:791:7: note: in expansion of macro 'MAT3' 791 | MAT3( uSW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:790:7: note: in expansion of macro 'MAT3' 790 | MAT3( uSE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:789:7: note: in expansion of macro 'MAT3' 789 | MAT3( uNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:788:7: note: in expansion of macro 'MAT3' 788 | MAT3( uNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:787:7: note: in expansion of macro 'MAT3' 787 | MAT3( uS, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:786:7: note: in expansion of macro 'MAT3' 786 | MAT3( uN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:785:7: note: in expansion of macro 'MAT3' 785 | MAT3( uW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:784:7: note: in expansion of macro 'MAT3' 784 | MAT3( uE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:783:7: note: in expansion of macro 'MAT3' 783 | MAT3( oNW, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:782:7: note: in expansion of macro 'MAT3' 782 | MAT3( oNE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:781:7: note: in expansion of macro 'MAT3' 781 | MAT3( uC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:780:7: note: in expansion of macro 'MAT3' 780 | MAT3( oN, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:779:7: note: in expansion of macro 'MAT3' 779 | MAT3( oE, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:778:7: note: in expansion of macro 'MAT3' 778 | MAT3( oC, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:34: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:25: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:19: warning: variable 'half' set but not used [-Wunused-but-set-variable] 776 | double won, half, quarter, eighth; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:774:17: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] 774 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:774:11: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] 774 | int kkm1, kkp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:773:17: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] 773 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:773:11: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] 773 | int jjm1, jjp1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:772:17: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] 772 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:772:11: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] 772 | int iim1, iip1; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:771:18: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] 771 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:771:12: warning: variable 'km2' set but not used [-Wunused-but-set-variable] 771 | int km2, kp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:769:18: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] 769 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:769:12: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] 769 | int jm2, jp2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:767:18: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] 767 | int im2, ip2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:767:12: warning: variable 'im2' set but not used [-Wunused-but-set-variable] 767 | int im2, ip2; | ^~~ [ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o -MF CMakeFiles/apbs_pmgc.dir/cgd.c.o.d -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c: In function 'Vcghs': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c:99:24: warning: 'rhok1' may be used uninitialized in this function [-Wmaybe-uninitialized] 99 | beta = rhok2 / rhok1; | ~~~~~~^~~~~~~ [ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o -MF CMakeFiles/apbs_pmgc.dir/gsd.c.o.d -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:67:5: note: in expansion of macro 'MAT2' 67 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb7x': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:116:5: note: in expansion of macro 'MAT3' 116 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:115:5: note: in expansion of macro 'MAT3' 115 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:114:5: note: in expansion of macro 'MAT3' 114 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:113:5: note: in expansion of macro 'MAT3' 113 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ [ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o -MF CMakeFiles/apbs_pmgc.dir/matvecd.c.o.d -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:108:5: note: in expansion of macro 'MAT3' 108 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:107:5: note: in expansion of macro 'MAT3' 107 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb27x': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:208:5: note: in expansion of macro 'MAT3' 208 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:207:5: note: in expansion of macro 'MAT3' 207 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:206:5: note: in expansion of macro 'MAT3' 206 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:205:5: note: in expansion of macro 'MAT3' 205 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:204:5: note: in expansion of macro 'MAT3' 204 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:203:5: note: in expansion of macro 'MAT3' 203 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:202:5: note: in expansion of macro 'MAT3' 202 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:201:5: note: in expansion of macro 'MAT3' 201 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:199:5: note: in expansion of macro 'MAT3' 199 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:198:5: note: in expansion of macro 'MAT3' 198 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:196:5: note: in expansion of macro 'MAT3' 196 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:195:5: note: in expansion of macro 'MAT3' 195 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:194:5: note: in expansion of macro 'MAT3' 194 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:193:5: note: in expansion of macro 'MAT3' 193 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' 191 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' 190 | MAT3(w2, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' 189 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:188:5: note: in expansion of macro 'MAT3' 188 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:187:5: note: in expansion of macro 'MAT3' 187 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' 186 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:182:9: warning: variable 'istep' set but not used [-Wunused-but-set-variable] 182 | int istep; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:17: warning: variable 'k2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:13: warning: variable 'j2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:9: warning: variable 'i2' set but not used [-Wunused-but-set-variable] 180 | int i2, j2, k2; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:17: warning: variable 'k1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:13: warning: variable 'j1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:9: warning: variable 'i1' set but not used [-Wunused-but-set-variable] 179 | int i1, j1, k1; | ^~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:87:5: note: in expansion of macro 'MAT2' 87 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:112:5: note: in expansion of macro 'MAT3' 112 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:111:5: note: in expansion of macro 'MAT3' 111 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:110:5: note: in expansion of macro 'MAT3' 110 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:109:5: note: in expansion of macro 'MAT3' 109 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:108:5: note: in expansion of macro 'MAT3' 108 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:107:5: note: in expansion of macro 'MAT3' 107 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:106:5: note: in expansion of macro 'MAT3' 106 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:139:5: note: in expansion of macro 'MAT2' 139 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:184:5: note: in expansion of macro 'MAT3' 184 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:183:5: note: in expansion of macro 'MAT3' 183 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:182:5: note: in expansion of macro 'MAT3' 182 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:180:5: note: in expansion of macro 'MAT3' 180 | MAT3(uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:179:5: note: in expansion of macro 'MAT3' 179 | MAT3(uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:178:5: note: in expansion of macro 'MAT3' 178 | MAT3(uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:177:5: note: in expansion of macro 'MAT3' 177 | MAT3(uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:176:5: note: in expansion of macro 'MAT3' 176 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:174:5: note: in expansion of macro 'MAT3' 174 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:173:5: note: in expansion of macro 'MAT3' 173 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:172:5: note: in expansion of macro 'MAT3' 172 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:171:5: note: in expansion of macro 'MAT3' 171 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:170:5: note: in expansion of macro 'MAT3' 170 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:168:5: note: in expansion of macro 'MAT3' 168 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:167:5: note: in expansion of macro 'MAT3' 167 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:166:5: note: in expansion of macro 'MAT3' 166 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:263:5: note: in expansion of macro 'MAT2' 263 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:292:5: note: in expansion of macro 'MAT3' 292 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:291:5: note: in expansion of macro 'MAT3' 291 | MAT3( y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:290:5: note: in expansion of macro 'MAT3' 290 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:289:5: note: in expansion of macro 'MAT3' 289 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' 288 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' 288 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' 288 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:287:5: note: in expansion of macro 'MAT3' 287 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:286:5: note: in expansion of macro 'MAT3' 286 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:285:5: note: in expansion of macro 'MAT3' 285 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:322:5: note: in expansion of macro 'MAT2' 322 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:370:5: note: in expansion of macro 'MAT3' 370 | MAT3( w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:369:5: note: in expansion of macro 'MAT3' 369 | MAT3( y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:368:5: note: in expansion of macro 'MAT3' 368 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:367:5: note: in expansion of macro 'MAT3' 367 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' 366 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' 366 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' 366 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:365:5: note: in expansion of macro 'MAT3' 365 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:364:5: note: in expansion of macro 'MAT3' 364 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:363:5: note: in expansion of macro 'MAT3' 363 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3' 362 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3' 361 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:360:5: note: in expansion of macro 'MAT3' 360 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:359:5: note: in expansion of macro 'MAT3' 359 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:358:5: note: in expansion of macro 'MAT3' 358 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:357:5: note: in expansion of macro 'MAT3' 357 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:356:5: note: in expansion of macro 'MAT3' 356 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:355:5: note: in expansion of macro 'MAT3' 355 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:354:5: note: in expansion of macro 'MAT3' 354 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:353:5: note: in expansion of macro 'MAT3' 353 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:451:5: note: in expansion of macro 'MAT2' 451 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:476:5: note: in expansion of macro 'MAT3' 476 | MAT3(r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:475:5: note: in expansion of macro 'MAT3' 475 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:474:5: note: in expansion of macro 'MAT3' 474 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:473:5: note: in expansion of macro 'MAT3' 473 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:472:5: note: in expansion of macro 'MAT3' 472 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:471:5: note: in expansion of macro 'MAT3' 471 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:470:5: note: in expansion of macro 'MAT3' 470 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:469:5: note: in expansion of macro 'MAT3' 469 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:503:5: note: in expansion of macro 'MAT2' 503 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:550:5: note: in expansion of macro 'MAT3' 550 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:549:5: note: in expansion of macro 'MAT3' 549 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:548:5: note: in expansion of macro 'MAT3' 548 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:547:5: note: in expansion of macro 'MAT3' 547 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:546:5: note: in expansion of macro 'MAT3' 546 | MAT3(uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:545:5: note: in expansion of macro 'MAT3' 545 | MAT3(uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:544:5: note: in expansion of macro 'MAT3' 544 | MAT3(uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:543:5: note: in expansion of macro 'MAT3' 543 | MAT3(uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:542:5: note: in expansion of macro 'MAT3' 542 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:540:5: note: in expansion of macro 'MAT3' 540 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:539:5: note: in expansion of macro 'MAT3' 539 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:538:5: note: in expansion of macro 'MAT3' 538 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:537:5: note: in expansion of macro 'MAT3' 537 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:536:5: note: in expansion of macro 'MAT3' 536 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:534:5: note: in expansion of macro 'MAT3' 534 | MAT3(r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:533:5: note: in expansion of macro 'MAT3' 533 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:532:5: note: in expansion of macro 'MAT3' 532 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:531:5: note: in expansion of macro 'MAT3' 531 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:623:5: note: in expansion of macro 'MAT2' 623 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:650:5: note: in expansion of macro 'MAT3' 650 | MAT3(w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:649:5: note: in expansion of macro 'MAT3' 649 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:648:5: note: in expansion of macro 'MAT3' 648 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:647:5: note: in expansion of macro 'MAT3' 647 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:646:5: note: in expansion of macro 'MAT3' 646 | MAT3(fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' 645 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' 645 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' 645 | MAT3(cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:644:5: note: in expansion of macro 'MAT3' 644 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:643:5: note: in expansion of macro 'MAT3' 643 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:642:5: note: in expansion of macro 'MAT3' 642 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:681:5: note: in expansion of macro 'MAT2' 681 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:727:5: note: in expansion of macro 'MAT3' 727 | MAT3( w1, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:726:5: note: in expansion of macro 'MAT3' 726 | MAT3( r, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:725:5: note: in expansion of macro 'MAT3' 725 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:724:5: note: in expansion of macro 'MAT3' 724 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:723:5: note: in expansion of macro 'MAT3' 723 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:722:5: note: in expansion of macro 'MAT3' 722 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:721:5: note: in expansion of macro 'MAT3' 721 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:720:5: note: in expansion of macro 'MAT3' 720 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:719:5: note: in expansion of macro 'MAT3' 719 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:718:5: note: in expansion of macro 'MAT3' 718 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:717:5: note: in expansion of macro 'MAT3' 717 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:716:5: note: in expansion of macro 'MAT3' 716 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:715:5: note: in expansion of macro 'MAT3' 715 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:714:5: note: in expansion of macro 'MAT3' 714 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:713:5: note: in expansion of macro 'MAT3' 713 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:712:5: note: in expansion of macro 'MAT3' 712 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:711:5: note: in expansion of macro 'MAT3' 711 | MAT3( fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' 710 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' 710 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' 710 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:709:5: note: in expansion of macro 'MAT3' 709 | MAT3( oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vrestrc': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:786:5: note: in expansion of macro 'MAT2' 786 | MAT2(pc, *nxc * *nyc * *nzc, 1 ); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vrestrc2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:852:5: note: in expansion of macro 'MAT3' 852 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:851:5: note: in expansion of macro 'MAT3' 851 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:850:5: note: in expansion of macro 'MAT3' 850 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:849:5: note: in expansion of macro 'MAT3' 849 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:847:5: note: in expansion of macro 'MAT3' 847 | MAT3(dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:846:5: note: in expansion of macro 'MAT3' 846 | MAT3(dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:845:5: note: in expansion of macro 'MAT3' 845 | MAT3(dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:844:5: note: in expansion of macro 'MAT3' 844 | MAT3(dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:843:5: note: in expansion of macro 'MAT3' 843 | MAT3(dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:841:5: note: in expansion of macro 'MAT3' 841 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:840:5: note: in expansion of macro 'MAT3' 840 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:839:5: note: in expansion of macro 'MAT3' 839 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:838:5: note: in expansion of macro 'MAT3' 838 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:836:5: note: in expansion of macro 'MAT3' 836 | MAT3(uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:835:5: note: in expansion of macro 'MAT3' 835 | MAT3(uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:834:5: note: in expansion of macro 'MAT3' 834 | MAT3(uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:833:5: note: in expansion of macro 'MAT3' 833 | MAT3(uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:832:5: note: in expansion of macro 'MAT3' 832 | MAT3(uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:830:5: note: in expansion of macro 'MAT3' 830 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:829:5: note: in expansion of macro 'MAT3' 829 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:828:5: note: in expansion of macro 'MAT3' 828 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:827:5: note: in expansion of macro 'MAT3' 827 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:825:5: note: in expansion of macro 'MAT3' 825 | MAT3(oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:824:5: note: in expansion of macro 'MAT3' 824 | MAT3(oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:823:5: note: in expansion of macro 'MAT3' 823 | MAT3(oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:822:5: note: in expansion of macro 'MAT3' 822 | MAT3(oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:821:5: note: in expansion of macro 'MAT3' 821 | MAT3(oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:819:5: note: in expansion of macro 'MAT3' 819 | MAT3(xout, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:818:5: note: in expansion of macro 'MAT3' 818 | MAT3(xin, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:816:12: warning: variable 'dimfac' set but not used [-Wunused-but-set-variable] 816 | double dimfac; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:920:5: note: in expansion of macro 'MAT2' 920 | MAT2(pc, *nxc * *nyc * *nzc, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:982:5: note: in expansion of macro 'MAT3' 982 | MAT3(dPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:981:5: note: in expansion of macro 'MAT3' 981 | MAT3(dPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:980:5: note: in expansion of macro 'MAT3' 980 | MAT3(dPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:979:5: note: in expansion of macro 'MAT3' 979 | MAT3(dPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:977:5: note: in expansion of macro 'MAT3' 977 | MAT3( dPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:976:5: note: in expansion of macro 'MAT3' 976 | MAT3( dPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:975:5: note: in expansion of macro 'MAT3' 975 | MAT3( dPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:974:5: note: in expansion of macro 'MAT3' 974 | MAT3( dPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:973:5: note: in expansion of macro 'MAT3' 973 | MAT3( dPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:971:5: note: in expansion of macro 'MAT3' 971 | MAT3(uPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:970:5: note: in expansion of macro 'MAT3' 970 | MAT3(uPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:969:5: note: in expansion of macro 'MAT3' 969 | MAT3(uPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:968:5: note: in expansion of macro 'MAT3' 968 | MAT3(uPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:966:5: note: in expansion of macro 'MAT3' 966 | MAT3( uPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:965:5: note: in expansion of macro 'MAT3' 965 | MAT3( uPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:964:5: note: in expansion of macro 'MAT3' 964 | MAT3( uPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:963:5: note: in expansion of macro 'MAT3' 963 | MAT3( uPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:962:5: note: in expansion of macro 'MAT3' 962 | MAT3( uPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:960:5: note: in expansion of macro 'MAT3' 960 | MAT3(oPSW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:959:5: note: in expansion of macro 'MAT3' 959 | MAT3(oPSE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:958:5: note: in expansion of macro 'MAT3' 958 | MAT3(oPNW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:957:5: note: in expansion of macro 'MAT3' 957 | MAT3(oPNE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:955:5: note: in expansion of macro 'MAT3' 955 | MAT3( oPW, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:954:5: note: in expansion of macro 'MAT3' 954 | MAT3( oPE, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:953:5: note: in expansion of macro 'MAT3' 953 | MAT3( oPS, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:952:5: note: in expansion of macro 'MAT3' 952 | MAT3( oPN, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' 951 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_oPC' [-Wunused-variable] 78 | int dy_##mat = dy; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' 951 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_oPC' [-Wunused-variable] 77 | int dx_##mat = dx; \ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' 951 | MAT3( oPC, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:949:5: note: in expansion of macro 'MAT3' 949 | MAT3(xout, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:948:5: note: in expansion of macro 'MAT3' 948 | MAT3( xin, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vextrac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:1086:5: note: in expansion of macro 'MAT3' 1086 | MAT3(xout, *nxc, *nyc, *nzc); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:1085:5: note: in expansion of macro 'MAT3' 1085 | MAT3( xin, *nxf, *nyf, *nzf); | ^~~~ [ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgcsd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c: In function 'Vmvcs': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:99:5: note: in expansion of macro 'MAT2' 99 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:303:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] 303 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:562:37: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] 562 | } while (*iters<*itmax && (rsnrm/rsden) > *errtol); | ~~~~~~^~~~~~~ [ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable] 85 | int ierror = 0; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.h:62, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:267:5: note: in expansion of macro 'MAT2' 267 | MAT2(iz, 50, nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:234:12: warning: unused variable 'tsolve' [-Wunused-variable] 234 | double tsolve = 0.0; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:233:12: warning: unused variable 'tsetupc' [-Wunused-variable] 233 | double tsetupc = 0.0; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:232:12: warning: unused variable 'tsetupf' [-Wunused-variable] 232 | double tsetupf = 0.0; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:231:12: warning: unused variable 'oh' [-Wunused-variable] 231 | double oh = 0.0; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:230:12: warning: unused variable 'bf' [-Wunused-variable] 230 | double bf = 0.0; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:226:12: warning: unused variable 'epsmac' [-Wunused-variable] 226 | double epsmac = 0.0; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgsz': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:655:26: warning: 'num_narrc_oper' may be used uninitialized [-Wmaybe-uninitialized] 655 | + (num_narrc + num_narrc_oper) * *narrc | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:656:13: warning: 'n_band' may be used uninitialized in this function [-Wmaybe-uninitialized] 653 | *iretot = num_narr * *narr | ~~~~~~~~~~~~~~~~ 654 | + (num_nf + num_nf_oper) * *nf | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 | + (num_narrc + num_narrc_oper) * *narrc | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 | + n_band | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:654:41: warning: 'num_nf_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] 654 | + (num_nf + num_nf_oper) * *nf | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ [ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgsubd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildops': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:83:5: note: in expansion of macro 'MAT2' 83 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildstr': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:266:5: note: in expansion of macro 'MAT2' 266 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildcopy0': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:628:5: note: in expansion of macro 'MAT3' 628 | MAT3( fcf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:627:5: note: in expansion of macro 'MAT3' 627 | MAT3( ccf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:626:5: note: in expansion of macro 'MAT3' 626 | MAT3( tcf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:625:5: note: in expansion of macro 'MAT3' 625 | MAT3(a3cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:624:5: note: in expansion of macro 'MAT3' 624 | MAT3(a2cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:623:5: note: in expansion of macro 'MAT3' 623 | MAT3(a1cf, *nxf, *nyf, *nzf); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:622:5: note: in expansion of macro 'MAT3' 622 | MAT3(gzcf, *nxf, *nyf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:621:5: note: in expansion of macro 'MAT3' 621 | MAT3(gycf, *nxf, *nzf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:620:5: note: in expansion of macro 'MAT3' 620 | MAT3(gxcf, *nyf, *nzf, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:619:5: note: in expansion of macro 'MAT3' 619 | MAT3( tc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:618:5: note: in expansion of macro 'MAT3' 618 | MAT3( fc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:617:5: note: in expansion of macro 'MAT3' 617 | MAT3( cc, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:616:5: note: in expansion of macro 'MAT3' 616 | MAT3( a3c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:615:5: note: in expansion of macro 'MAT3' 615 | MAT3( a2c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1c' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:614:5: note: in expansion of macro 'MAT3' 614 | MAT3( a1c, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:613:5: note: in expansion of macro 'MAT3' 613 | MAT3( gzc, *nx, *ny, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:612:5: note: in expansion of macro 'MAT3' 612 | MAT3( gyc, *nx, *nz, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:611:5: note: in expansion of macro 'MAT3' 611 | MAT3( gxc, *ny, *nz, 4); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildalg': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:914:5: note: in expansion of macro 'MAT2' 914 | MAT2(iz, 50, *nlev); | ^~~~ [ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -MF CMakeFiles/apbs_pmgc.dir/mikpckd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c [ 45%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -MF CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:60:5: note: in expansion of macro 'MAT3' 60 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:59:5: note: in expansion of macro 'MAT3' 59 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_small': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:78:5: note: in expansion of macro 'MAT3' 78 | MAT3(y, *nx - 2, *ny - 2, *nz - 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:77:5: note: in expansion of macro 'MAT3' 77 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_large': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:99:5: note: in expansion of macro 'MAT3' 99 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:98:5: note: in expansion of macro 'MAT3' 98 | MAT3(x, *nx - 2, *ny - 2, *nz - 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxaxpy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:117:5: note: in expansion of macro 'MAT3' 117 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:116:5: note: in expansion of macro 'MAT3' 116 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm1': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:136:5: note: in expansion of macro 'MAT3' 136 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:157:5: note: in expansion of macro 'MAT3' 157 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxdot': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:182:5: note: in expansion of macro 'MAT3' 182 | MAT3(y, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:181:5: note: in expansion of macro 'MAT3' 181 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vazeros': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:198:9: warning: unused variable 'nproc' [-Wunused-variable] 198 | int nproc = 1; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:218:5: note: in expansion of macro 'MAT3' 218 | MAT3(gzc, *nx, *ny, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:217:5: note: in expansion of macro 'MAT3' 217 | MAT3(gyc, *nx, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:216:5: note: in expansion of macro 'MAT3' 216 | MAT3(gxc, *ny, *nz, 2); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:215:5: note: in expansion of macro 'MAT3' 215 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG00': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:262:5: note: in expansion of macro 'MAT3' 262 | MAT3( x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vaxrand': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:295:12: warning: variable 'xdum' set but not used [-Wunused-but-set-variable] 295 | double xdum; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:293:33: warning: variable 'iflag' set but not used [-Wunused-but-set-variable] 293 | int n, i, ii, ipara, ivect, iflag; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:293:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 293 | int n, i, ii, ipara, ivect, iflag; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxscal': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:322:5: note: in expansion of macro 'MAT3' 322 | MAT3(x, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:337:5: note: in expansion of macro 'MAT2' 337 | MAT2(ac, *nx * *ny * *nz, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:370:5: note: in expansion of macro 'MAT3' 370 | MAT3(uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:369:5: note: in expansion of macro 'MAT3' 369 | MAT3(oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:368:5: note: in expansion of macro 'MAT3' 368 | MAT3(oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:367:5: note: in expansion of macro 'MAT3' 367 | MAT3(oC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:415:5: note: in expansion of macro 'MAT3' 415 | MAT3(uSW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:414:5: note: in expansion of macro 'MAT3' 414 | MAT3(uSE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:413:5: note: in expansion of macro 'MAT3' 413 | MAT3(uNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:412:5: note: in expansion of macro 'MAT3' 412 | MAT3(uNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:411:5: note: in expansion of macro 'MAT3' 411 | MAT3( uS, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:410:5: note: in expansion of macro 'MAT3' 410 | MAT3( uN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:409:5: note: in expansion of macro 'MAT3' 409 | MAT3( uW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:408:5: note: in expansion of macro 'MAT3' 408 | MAT3( uE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:407:5: note: in expansion of macro 'MAT3' 407 | MAT3(oNW, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:406:5: note: in expansion of macro 'MAT3' 406 | MAT3(oNE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:405:5: note: in expansion of macro 'MAT3' 405 | MAT3( uC, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:404:5: note: in expansion of macro 'MAT3' 404 | MAT3( oN, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:403:5: note: in expansion of macro 'MAT3' 403 | MAT3( oE, *nx, *ny, *nz); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:402:5: note: in expansion of macro 'MAT3' 402 | MAT3( oC, *nx, *ny, *nz); | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbsl': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:62:5: note: in expansion of macro 'MAT2' 62 | MAT2(abd, *lda, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbfa': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:199:5: note: in expansion of macro 'MAT2' 199 | MAT2(abd, *lda, 1); | ^~~~ [ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o -MF CMakeFiles/apbs_pmgc.dir/mypdec.c.o.d -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vmypdefinitsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:96:9: warning: unused variable 'i' [-Wunused-variable] 96 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vc_vecsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 223 | int n, i, ii, ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:19: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] 223 | int n, i, ii, ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:15: warning: unused variable 'ii' [-Wunused-variable] 223 | int n, i, ii, ipara, ivect; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:222:9: warning: unused variable 'iion' [-Wunused-variable] 222 | int iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:28: warning: unused variable 'fact' [-Wunused-variable] 219 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:22: warning: unused variable 'poly' [-Wunused-variable] 219 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:12: warning: unused variable 'argument' [-Wunused-variable] 219 | double argument, poly, fact; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:218:29: warning: unused variable 'am_pos' [-Wunused-variable] 218 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:218:21: warning: unused variable 'am_neg' [-Wunused-variable] 218 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:217:18: warning: unused variable 'zu2' [-Wunused-variable] 217 | double zcf2, zu2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:217:12: warning: unused variable 'zcf2' [-Wunused-variable] 217 | double zcf2, zu2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:216:9: warning: unused variable 'ideg' [-Wunused-variable] 216 | int ideg; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vec': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:345:9: warning: unused variable 'n' [-Wunused-variable] 345 | int n = *nx * *ny * *nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:344:9: warning: unused variable 'i' [-Wunused-variable] 344 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecpmg': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:360:28: warning: unused variable 'fact' [-Wunused-variable] 360 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:360:22: warning: unused variable 'poly' [-Wunused-variable] 360 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:357:9: warning: unused variable 'ideg' [-Wunused-variable] 357 | int ideg, iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:433:16: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] 433 | int ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:433:9: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] 433 | int ipara, ivect; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:432:15: warning: unused variable 'ii' [-Wunused-variable] 432 | int n, i, ii; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:28: warning: unused variable 'fact' [-Wunused-variable] 429 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:22: warning: unused variable 'poly' [-Wunused-variable] 429 | double argument, poly, fact; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:12: warning: unused variable 'argument' [-Wunused-variable] 429 | double argument, poly, fact; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:428:29: warning: unused variable 'am_pos' [-Wunused-variable] 428 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:428:21: warning: unused variable 'am_neg' [-Wunused-variable] 428 | double am_zero, am_neg, am_pos; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:427:18: warning: unused variable 'zu2' [-Wunused-variable] 427 | double zcf2, zu2; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:427:12: warning: unused variable 'zcf2' [-Wunused-variable] 427 | double zcf2, zu2; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:426:15: warning: unused variable 'iion' [-Wunused-variable] 426 | int ideg, iion; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:426:9: warning: unused variable 'ideg' [-Wunused-variable] 426 | int ideg, iion; | ^~~~ [ 48%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o -MF CMakeFiles/apbs_pmgc.dir/newtond.c.o.d -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:56: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vfnewton': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:77:5: note: in expansion of macro 'MAT2' 77 | MAT2( iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vnewton': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:187:5: note: in expansion of macro 'MAT2' 187 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vgetjac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:560:5: note: in expansion of macro 'MAT2' 560 | MAT2(iz, 50, 1); | ^~~~ [ 49%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -MF CMakeFiles/apbs_pmgc.dir/newdrvd.c.o.d -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:86:9: warning: unused variable 'maxlev' [-Wunused-variable] 86 | int maxlev; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable] 85 | int ierror; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:223:9: warning: unused variable 'i' [-Wunused-variable] 223 | int i; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:221:12: warning: unused variable 'orsnrm_t' [-Wunused-variable] 221 | double orsnrm_t; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:220:12: warning: unused variable 'rsden_t' [-Wunused-variable] 220 | double rsden_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:219:12: warning: unused variable 'rsnrm_t' [-Wunused-variable] 219 | double rsnrm_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:218:9: warning: unused variable 'iters_t' [-Wunused-variable] 218 | int iters_t; | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:217:9: warning: unused variable 'iok_t' [-Wunused-variable] 217 | int iok_t; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:215:9: warning: unused variable 'numlev' [-Wunused-variable] 215 | int numlev; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:210:12: warning: unused variable 'tsolve' [-Wunused-variable] 210 | double tsolve; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:209:12: warning: unused variable 'tsetupc' [-Wunused-variable] 209 | double tsetupc; /// @todo: Doc | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:208:12: warning: unused variable 'tsetupf' [-Wunused-variable] 208 | double tsetupf; /// @todo: Doc | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:207:12: warning: unused variable 'oh' [-Wunused-variable] 207 | double oh; /// @todo: Doc | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:206:12: warning: unused variable 'bf' [-Wunused-variable] 206 | double bf; /// @todo: Doc | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:204:12: warning: variable 'omegal' set but not used [-Wunused-but-set-variable] 204 | double omegal; /// @todo: Doc | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:202:12: warning: unused variable 'epsmac' [-Wunused-variable] 202 | double epsmac; /// @todo: Doc | ^~~~~~ [ 50%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o -MF CMakeFiles/apbs_pmgc.dir/powerd.c.o.d -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c [ 51%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o -MF CMakeFiles/apbs_pmgc.dir/smoothd.c.o.d -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vpower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:74:5: note: in expansion of macro 'MAT2' 74 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:71:9: warning: unused variable 'skipIters' [-Wunused-variable] 71 | int skipIters = 0; | ^~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vipower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:188:5: note: in expansion of macro 'MAT2' 188 | MAT2(iz, 50, 1); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vmpower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:311:5: note: in expansion of macro 'MAT2' 311 | MAT2(iz, 50, 1); | ^~~~ [ 52%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/pmgc && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -MF CMakeFiles/apbs_pmgc.dir/mgfasd.c.o.d -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c: In function 'Vfmvfas': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:79:5: note: in expansion of macro 'MAT2' 79 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:74:12: warning: variable 'errd' set but not used [-Wunused-but-set-variable] 74 | double errd; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c: In function 'Vmvfas': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] 66 | int dy_##mat = dy | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:182:5: note: in expansion of macro 'MAT2' 182 | MAT2(iz, 50, *nlev); | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:171:33: warning: unused variable 'ivariv' [-Wunused-variable] 171 | int itmax_s, iters_s, nuuu, ivariv, mgsmoo_s, iresid; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:359:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] 359 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:597:24: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] 597 | if ((rsnrm / rsden) <= *errtol) | ~~~~~~~^~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 52%] Built target apbs_pmgc /usr/bin/gmake -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend /usr/bin/gmake -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 54%] Linking C shared library ../lib/libapbs.so cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 [ 55%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python && /usr/bin/gcc -D_apbslib_EXPORTS -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/usr/include/python3.9 -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -MD -MT tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -MF CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o.d -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /usr/bin/gcc -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -shared -Wl,-soname,libapbs.so.1 -o ../lib/libapbs.so.1 generic/CMakeFiles/apbs_generic.dir/nosh.c.o generic/CMakeFiles/apbs_generic.dir/mgparm.c.o generic/CMakeFiles/apbs_generic.dir/femparm.c.o generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o generic/CMakeFiles/apbs_generic.dir/bemparm.c.o generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o generic/CMakeFiles/apbs_generic.dir/apolparm.c.o generic/CMakeFiles/apbs_generic.dir/vacc.c.o generic/CMakeFiles/apbs_generic.dir/valist.c.o generic/CMakeFiles/apbs_generic.dir/vatom.c.o generic/CMakeFiles/apbs_generic.dir/vpbe.c.o generic/CMakeFiles/apbs_generic.dir/vcap.c.o generic/CMakeFiles/apbs_generic.dir/vclist.c.o generic/CMakeFiles/apbs_generic.dir/vstring.c.o generic/CMakeFiles/apbs_generic.dir/vparam.c.o generic/CMakeFiles/apbs_generic.dir/vgreen.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o mg/CMakeFiles/apbs_mg.dir/vgrid.c.o mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o mg/CMakeFiles/apbs_mg.dir/vopot.c.o mg/CMakeFiles/apbs_mg.dir/vpmg.c.o mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getPotentials': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3264:12: warning: unused variable 'rc' [-Wunused-variable] 3264 | int i, rc, nx, ny, nz; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getForces': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3318:31: warning: unused variable 'npholder' [-Wunused-variable] 3318 | PyObject *npvalues, *np, *npholder; | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3318:26: warning: unused variable 'np' [-Wunused-variable] 3318 | PyObject *npvalues, *np, *npholder; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3318:15: warning: unused variable 'npvalues' [-Wunused-variable] 3318 | PyObject *npvalues, *np, *npholder; | ^~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2727: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2727: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2727: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:2727: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ [ 56%] Linking C shared library ../../lib/_apbslib.so cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_apbslib.dir/link.txt --verbose=1 /usr/bin/gcc -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -shared -Wl,-soname,_apbslib.so -o ../../lib/_apbslib.so CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/valist.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o ../../src/CMakeFiles/apbs_routines.dir/routines.c.o -lm -lstdc++ -lmaloc -fopenmp /usr/lib64/libpython3.9.so cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libapbs.so.1 ../lib/libapbs.so.1 ../lib/libapbs.so gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 56%] Built target apbs /usr/bin/gmake -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 57%] Building C object src/CMakeFiles/apbs-bin.dir/main.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT src/CMakeFiles/apbs-bin.dir/main.c.o -MF CMakeFiles/apbs-bin.dir/main.c.o.d -o CMakeFiles/apbs-bin.dir/main.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:117:11: warning: unused variable 'gm' [-Wunused-variable] 117 | void *gm[NOSH_MAXMOL]; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:116:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable] 116 | void *fetk[NOSH_MAXCALC]; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:96:18: warning: unused variable 'geoflowparm' [-Wunused-variable] 96 | GEOFLOWparm *geoflowparm = VNULL; | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:92:14: warning: unused variable 'feparm' [-Wunused-variable] 92 | FEMparm *feparm = VNULL; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:86:17: warning: unused variable 'te' [-Wunused-variable] 86 | clock_t ts, te; | ^~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ [ 58%] Building C object src/CMakeFiles/apbs-bin.dir/routines.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT src/CMakeFiles/apbs-bin.dir/routines.c.o -MF CMakeFiles/apbs-bin.dir/routines.c.o.d -o CMakeFiles/apbs-bin.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 296 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 298 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 331 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 333 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 420 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 422 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 454 | for (ii=0; ii<(nx*ny*nz); ii++) | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 456 | sum = sum*hx*hy*hzed; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] 1234 | iparm, | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] 1584 | MGparm *mgparm; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] 1803 | char mxtype[3]; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] 3485 | scalar, | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] 3484 | double temp, | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] 4496 | sav, /**< @todo document */ | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] 4495 | double sasa, /**< @todo document */ | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable] 4489 | time_t ts; /**< Temporary timing variable for debugging (PCE) */ | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable] 4753 | *apos; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable] 4737 | time_t ts, ts_main, ts_sub; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG.part.0': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 1840 | sprintf(outpath, "%s.%s", writematstem, "mat"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=] 4590 | atomData = Vparam_getAtomData(param, "WAT", "OW"); | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: note: referencing argument 2 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: note: referencing argument 3 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c:267:26: note: in a call to function 'Vparam_getAtomData' 267 | VPUBLIC Vparam_AtomData* Vparam_getAtomData(Vparam *thee, | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=] 4591 | if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O"); | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: note: referencing argument 2 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: note: referencing argument 3 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c:267:26: note: in a call to function 'Vparam_getAtomData' 267 | VPUBLIC Vparam_AtomData* Vparam_getAtomData(Vparam *thee, | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataMG.part.0': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2676 | sprintf(outpath, "%s.%s", writestem, "dxbin"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2720 | sprintf(outpath, "%s.%s", writestem, "txt"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2711 | sprintf(outpath, "%s.%s", writestem, "dx.gz"); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2694 | sprintf(outpath, "%s.%s", writestem, "mcsf"); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2687 | sprintf(outpath, "%s.%s", writestem, "ucd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2701 | sprintf(outpath, "%s.%s", writestem, "grd"); | ^~ ~~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 2666 | sprintf(outpath, "%s.%s", writestem, "dx"); | ^~ ~~~~ In file included from /usr/include/stdio.h:900, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2105:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2105 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2363:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2363 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2778:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2778 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2839:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2839 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2904:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2904 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na * /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2970:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] 2970 | gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2971 | (apolparm->press*apolparm->sav) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2972 | (apolparm->wcaEnergy))); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4547:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized] 4547 | disp[0] = (x - center[0]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4516:12: note: 'center' declared here 4516 | center[3], /**< @todo document */ | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4548:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized] 4548 | disp[1] = (y - center[1]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4516:12: note: 'center' declared here 4516 | center[3], /**< @todo document */ | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4549:30: warning: 'center' may be used uninitialized [-Wmaybe-uninitialized] 4549 | disp[2] = (z - center[2]); | ~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4516:12: note: 'center' declared here 4516 | center[3], /**< @todo document */ | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=] 4590 | atomData = Vparam_getAtomData(param, "WAT", "OW"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: note: referencing argument 2 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: note: referencing argument 3 of type 'char *' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/apolparm.h:73, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:73, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData' 304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee, | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=] 4591 | if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: note: referencing argument 2 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: note: referencing argument 3 of type 'char *' In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/apolparm.h:73, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:73, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData' 304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee, | ^~~~~~~~~~~~~~~~~~ [ 60%] Linking C executable ../bin/apbs cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs-bin.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -rdynamic CMakeFiles/apbs-bin.dir/main.c.o CMakeFiles/apbs-bin.dir/routines.c.o -o ../bin/apbs -lm -lstdc++ -lmaloc -fopenmp ../lib/libapbs.so.1 cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python && /usr/bin/cmake -E copy /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python/apbslib.py /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/../pdb2pqr/pdb2pka cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/python && /usr/bin/cmake -E copy /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/lib/_apbslib.so /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/../pdb2pqr/pdb2pka gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 60%] Built target _apbslib /usr/bin/gmake -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 61%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -MF CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o.d -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_grid' [-Wunused-variable] 79 | int dz_##mat = dz | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:24:5: note: in expansion of macro 'MAT3' 24 | MAT3(grid, MXGRD, MXGRD, MXGRD); | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 30 | scanf("%s", flnm); | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:42:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | scanf("%s", newfile); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:54:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fscanf(inFile, "%s", title); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:57:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 57 | fscanf(inFile, "%lf", &scale); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:60:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 60 | fscanf(inFile, "%lf", &dum2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:63:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 63 | fscanf(inFile, "%d", &grdflg); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:66:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 66 | fscanf(inFile, "%d", &idum2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:69:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 69 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:72:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fscanf(inFile, "%d", &one); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:75:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 75 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:78:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | fscanf(inFile, "%d", &im); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:81:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 81 | fscanf(inFile, "%d", &jm); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:84:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 84 | fscanf(inFile, "%d", &km); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:87:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | fscanf(inFile, "%lf", &h); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:90:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 90 | fscanf(inFile, "%lf", &ox); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:93:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fscanf(inFile, "%lf", &oy); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:96:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | fscanf(inFile, "%lf", &oz); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:99:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fscanf(inFile, "%lf", &dum3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:102:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 102 | fscanf(inFile, "%lf", &dum4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:105:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 105 | fscanf(inFile, "%lf", &dum5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:108:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 108 | fscanf(inFile, "%lf", &dum6); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:111:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fscanf(inFile, "%lf", &dum7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:114:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 114 | fscanf(inFile, "%lf", &dum8); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:117:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fscanf(inFile, "%d", &idum3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:120:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fscanf(inFile, "%d", &idum4); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:125:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 125 | fscanf(inFile, "%d", &kk); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:128:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 128 | fscanf(inFile, "%d", &im); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:131:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fscanf(inFile, "%d", &jm); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(inFile, "%lf", RAT3(grid, i, j, k)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Linking C executable ../bin/uhbd_asc2bin cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=] 4590 | atomData = Vparam_getAtomData(param, "WAT", "OW"); | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: note: referencing argument 2 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 3 [-Wstringop-overflow=] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4590:20: note: referencing argument 3 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData' 304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee, | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 4 [-Wstringop-overflow=] 4591 | if (atomData == VNULL) atomData = Vparam_getAtomData(param, "WAT", "O"); | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: note: referencing argument 2 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: warning: 'Vparam_getAtomData' accessing 1024 bytes in a region of size 2 [-Wstringop-overflow=] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4591:43: note: referencing argument 3 of type 'char *' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.h:304:27: note: in a call to function 'Vparam_getAtomData' 304 | VEXTERNC Vparam_AtomData* Vparam_getAtomData(Vparam *thee, | ^ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 62%] Built target uhbd_asc2bin /usr/bin/gmake -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 63%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o -MF CMakeFiles/tensor2dx.dir/tensor2dx.c.o.d -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:19: warning: unused variable 'index' [-Wunused-variable] 42 | int i,j,k,index,icol; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:17: warning: unused variable 'k' [-Wunused-variable] 42 | int i,j,k,index,icol; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:15: warning: unused variable 'j' [-Wunused-variable] 42 | int i,j,k,index,icol; | ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:97:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:98:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 98 | fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:137:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:138:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 138 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:139:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 139 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:140:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 140 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:155:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:156:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 156 | fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:157:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:158:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 158 | fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Linking C executable ../bin/tensor2dx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 64%] Built target apbs-bin /usr/bin/gmake -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 65%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o -MF CMakeFiles/mgmesh.dir/mgmesh.c.o.d -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 65%] Built target tensor2dx /usr/bin/gmake -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= [ 67%] Linking C executable ../bin/mgmesh cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../bin/mgmesh ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 68%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o -MF CMakeFiles/mergedx.dir/mergedx.c.o.d -o CMakeFiles/mergedx.dir/mergedx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 68%] Built target mgmesh /usr/bin/gmake -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 69%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o -MF CMakeFiles/del2dx.dir/del2dx.c.o.d -o CMakeFiles/del2dx.dir/del2dx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:64: warning: variable 'extent' set but not used [-Wunused-but-set-variable] 45 | float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:50: warning: unused variable 'xdata' [-Wunused-variable] 45 | float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:15: warning: unused variable 'val' [-Wunused-variable] 45 | float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:76:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&igrid, 1, sizeof(int), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:89:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 89 | fread(buffer, 1, sizeof(char) * 10, pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:97:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(data, tot_grid, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:103:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | fread(&scale, 1, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:106:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(oldmid, 3, sizeof(float), pfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized] 81 | mgrid = Vgrid_ctor(nx, ny, nz, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, VNULL); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'nz' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'ny' may be used uninitialized in this function [-Wmaybe-uninitialized] [ 70%] Linking C executable ../bin/del2dx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/del2dx.dir/del2dx.c.o -o ../bin/del2dx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 71%] Linking C executable ../bin/mergedx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 71%] Built target del2dx /usr/bin/gmake -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 72%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/smooth.dir/smooth.c.o -MF CMakeFiles/smooth.dir/smooth.c.o.d -o CMakeFiles/smooth.dir/smooth.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:169:15: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] 169 | } else if (format == VDF_DXBIN) { | ^ [ 74%] Linking C executable ../bin/smooth cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 74%] Built target mergedx /usr/bin/gmake -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 75%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o -MF CMakeFiles/dxmath.dir/dxmath.c.o.d -o CMakeFiles/dxmath.dir/dxmath.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:41:10: warning: unused variable 'format' [-Wunused-variable] 41 | char format[VMAX_BUFSIZE]; | ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 75%] Built target smooth /usr/bin/gmake -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 76%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o -MF CMakeFiles/mergedx2.dir/mergedx2.c.o.d -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c [ 77%] Linking C executable ../bin/dxmath cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/dxmath.dir/dxmath.c.o -o ../bin/dxmath ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 77%] Built target dxmath /usr/bin/gmake -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 78%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o -MF CMakeFiles/benchmark.dir/benchmark.c.o.d -o CMakeFiles/benchmark.dir/benchmark.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:28:12: warning: unused variable 'grid' [-Wunused-variable] 28 | Vgrid *grid; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:58: warning: unused variable 'sum' [-Wunused-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:51: warning: unused variable 'value' [-Wunused-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:44: warning: unused variable 'pt' [-Wunused-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:38: warning: variable 'zmin' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:32: warning: variable 'ymin' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:26: warning: variable 'xmin' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:20: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:16: warning: variable 'hx' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:12: warning: variable 'hy' set but not used [-Wunused-but-set-variable] 18 | double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; | ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:27: warning: unused variable 'k' [-Wunused-variable] 17 | int nx, ny, nz, i, j, k, itmp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:24: warning: unused variable 'j' [-Wunused-variable] 17 | int nx, ny, nz, i, j, k, itmp; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:21: warning: unused variable 'i' [-Wunused-variable] 17 | int nx, ny, nz, i, j, k, itmp; | ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ [ 80%] Linking C executable ../bin/benchmark cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/benchmark.dir/benchmark.c.o -o ../bin/benchmark ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 81%] Linking C executable ../bin/mergedx2 cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 81%] Built target benchmark /usr/bin/gmake -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 82%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o -MF CMakeFiles/dx2mol.dir/dx2mol.c.o.d -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:28:12: warning: unused variable 'avg' [-Wunused-variable] 28 | double avg; | ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ [ 83%] Linking C executable ../bin/dx2mol cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../bin/dx2mol ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 83%] Built target mergedx2 /usr/bin/gmake -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 84%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/value.dir/value.c.o -MF CMakeFiles/value.dir/value.c.o.d -o CMakeFiles/value.dir/value.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:37:9: warning: unused variable 'inorm' [-Wunused-variable] 37 | int inorm; | ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ [ 84%] Built target dx2mol /usr/bin/gmake -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 85%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o -MF CMakeFiles/multivalue.dir/multivalue.c.o.d -o CMakeFiles/multivalue.dir/multivalue.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c [ 87%] Linking C executable ../bin/value cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/value.dir/value.c.o -o ../bin/value ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ [ 88%] Linking C executable ../bin/multivalue cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/multivalue.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/multivalue.dir/multivalue.c.o -o ../bin/multivalue ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 88%] Built target value /usr/bin/gmake -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 89%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/similarity.dir/similarity.c.o -MF CMakeFiles/similarity.dir/similarity.c.o.d -o CMakeFiles/similarity.dir/similarity.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 89%] Built target multivalue /usr/bin/gmake -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 90%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/analysis.dir/analysis.c.o -MF CMakeFiles/analysis.dir/analysis.c.o.d -o CMakeFiles/analysis.dir/analysis.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c In file included from /usr/include/string.h:519, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:298:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:305:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:312:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:322:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:329:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:452:14: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] 452 | if (!readGrid(&mask2, mask2Path, format)) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/maloc/maloc_base.h:82, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:123:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'main' at /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:133:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' specified bound 1024 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 292 | Vnm_print(1, "Min gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 | minG2pt[0], minG2pt[1], minG2pt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 284 | Vnm_print(1, "Min scalar value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 | minSpt[0], minSpt[1], minSpt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 288 | Vnm_print(1, "Max gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 | maxG2pt[0], maxG2pt[1], maxG2pt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 280 | Vnm_print(1, "Max scalar value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 | maxSpt[0], maxSpt[1], maxSpt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 288 | Vnm_print(1, "Max gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 | maxG2pt[0], maxG2pt[1], maxG2pt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 280 | Vnm_print(1, "Max scalar value location = (%4.3f, %4.3f, %4.3f)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 | maxSpt[0], maxSpt[1], maxSpt[2]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:290:5: warning: 'minG2' may be used uninitialized in this function [-Wmaybe-uninitialized] 290 | Vnm_print(1, "Min gradient-squared value = %1.12E\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 | minG2); | ~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:286:5: warning: 'maxG2' may be used uninitialized in this function [-Wmaybe-uninitialized] 286 | Vnm_print(1, "Max gradient-squared value = %1.12E\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 | maxG2); | ~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:278:5: warning: 'maxS' may be used uninitialized in this function [-Wmaybe-uninitialized] 278 | Vnm_print(1, "Max scalar value = %1.12E\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 | maxS); | ~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:182:14: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] 182 | if (!readGrid(&mask, maskPath, format)) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Linking C executable ../bin/similarity cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 92%] Linking C executable ../bin/analysis cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/analysis.dir/analysis.c.o -o ../bin/analysis ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 92%] Built target analysis /usr/bin/gmake -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 94%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -MF CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o.d -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 94%] Built target similarity /usr/bin/gmake -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 95%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/manip && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/manip/CMakeFiles/born.dir/born.c.o -MF CMakeFiles/born.dir/born.c.o.d -o CMakeFiles/born.dir/born.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:25:10: warning: unused variable 'avg' [-Wunused-variable] 25 | double avg; | ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:19: warning: unused variable 'k' [-Wunused-variable] 24 | size_t u, i, j, k, nx, ny, nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:16: warning: unused variable 'j' [-Wunused-variable] 24 | size_t u, i, j, k, nx, ny, nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:13: warning: unused variable 'i' [-Wunused-variable] 24 | size_t u, i, j, k, nx, ny, nz; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:10: warning: unused variable 'u' [-Wunused-variable] 24 | size_t u, i, j, k, nx, ny, nz; | ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ [ 96%] Linking C executable ../bin/dx2uhbd cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 97%] Linking C executable ../bin/born cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/born.dir/born.c.o -o ../bin/born ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 97%] Built target dx2uhbd /usr/bin/gmake -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/gmake -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 98%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/manip && /usr/bin/gcc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -MD -MT tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o -MF CMakeFiles/coulomb.dir/coulomb.c.o.d -o CMakeFiles/coulomb.dir/coulomb.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:20:12: warning: unused variable 'j' [-Wunused-variable] 20 | int i, j; | ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:18:34: warning: unused variable 'disp' [-Wunused-variable] 18 | double *pos, energy, zmagic, disp[3], force[3]; | ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] 169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] 171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] 251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] 260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] 269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] 278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] 287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] 296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] 305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] 314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] 323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] 332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] 341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] 350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] 359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] 199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] 208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] 217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] 226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] 235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] 811 | VPRIVATE void bcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] 834 | VPRIVATE void bcolcomp2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] 863 | VPRIVATE void bcolcomp3( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] 885 | VPRIVATE void bcolcomp4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] 910 | VPRIVATE void pcolcomp( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] 933 | VPRIVATE double bspline2( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] 942 | VPRIVATE double dbspline2( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] 951 | VPRIVATE double VFCHI4( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] 961 | VPRIVATE double bspline4( | ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] 970 | VPRIVATE double dbspline4( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] 979 | VPRIVATE double d2bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] 988 | VPRIVATE double d3bspline4( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] 998 | VPRIVATE double Vpmg_polarizEnergy( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] 1009 | VPRIVATE double Vpmg_qfEnergyPoint( | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] 1020 | VPRIVATE double Vpmg_qfEnergyVolume( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] 1031 | VPRIVATE void Vpmg_splineSelect( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] 1047 | VPRIVATE void focusFillBound( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] 1058 | VPRIVATE void bcfl1( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] 1080 | VPRIVATE void bcfl2( | ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] 1109 | VPRIVATE void multipolebc( | ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] 1126 | VPRIVATE double bcfl1sp( | ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] 1139 | VPRIVATE void bcCalc( | ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] 1147 | VPRIVATE void fillcoCoef( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] 1155 | VPRIVATE void fillcoCoefMap( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] 1164 | VPRIVATE void fillcoCoefMol( | ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] 1173 | VPRIVATE void fillcoCoefMolIon( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] 1182 | VPRIVATE void fillcoCoefMolDiel( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] 1191 | VPRIVATE void fillcoCoefMolDielNoSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] 1208 | VPRIVATE void fillcoCoefMolDielSmooth( | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] 1217 | VPRIVATE void fillcoCoefSpline( | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] 1226 | VPRIVATE void fillcoCoefSpline3( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] 1235 | VPRIVATE void fillcoCoefSpline4( | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] 1244 | VPRIVATE Vrc_Codes fillcoCharge( | ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] 1253 | VPRIVATE Vrc_Codes fillcoChargeMap( | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] 1261 | VPRIVATE void fillcoChargeSpline1( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] 1269 | VPRIVATE void fillcoChargeSpline2( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] 1277 | VPRIVATE void fillcoPermanentMultipole( | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] 1285 | VPRIVATE void fillcoInducedDipole( | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] 1294 | VPRIVATE void fillcoNLInducedDipole( | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] 1304 | VPRIVATE void extEnergy( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] 1317 | VPRIVATE void qfForceSpline1( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] 1327 | VPRIVATE void qfForceSpline2( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] 1337 | VPRIVATE void qfForceSpline4( | ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] 1351 | VPRIVATE void zlapSolve( | ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] 1364 | VPRIVATE void markSphere( | ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] 1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] 1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); | ^~~~~~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [ 98%] Built target born [100%] Linking C executable ../bin/coulomb cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fcommon -m64 -march=x86-64-v2 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp gmake[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' [100%] Built target coulomb gmake[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/redhat-linux-build/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1iyziI + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 ++ dirname /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 + cd apbs-pdb2pqr-vAPBS-3.0.0 + DESTDIR=/builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/apbs/tools/bin -- 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/builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/include/apbs/pmgc/smoothd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/include/apbs/pmgc/mgfasd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/include/apbs/mg/vgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/include/apbs/mg/vmgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/include/apbs/mg/vopot.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/include/apbs/mg/vpmg.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/include/apbs/mg/vpmgp.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mgmesh -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/smooth -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dxmath -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mergedx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mergedx2 -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/value -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/multivalue -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/benchmark -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/similarity -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/analysis -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dx2mol -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dx2uhbd -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/del2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/tensor2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/uhbd_asc2bin -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/coulomb -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/born -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib/libiapbs.a -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/include/iapbs/apbs_driver.h + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/coulomb + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/coulomb /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-coulomb + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/coulomb + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/born + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/born /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-born + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/born + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mgmesh + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mgmesh /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mgmesh + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mgmesh + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dxmath + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dxmath /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dxmath + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dxmath + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mergedx2 + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mergedx2 /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mergedx2 + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mergedx2 + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mergedx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mergedx /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mergedx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/mergedx + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/value + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/value /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-value + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/value + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/uhbd_asc2bin + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/uhbd_asc2bin /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-uhbd_asc2bin + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/uhbd_asc2bin + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/smooth + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/smooth /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-smooth + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/smooth + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dx2mol + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dx2mol /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dx2mol + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dx2mol + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dx2uhbd + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dx2uhbd /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dx2uhbd + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/dx2uhbd + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/similarity + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/similarity /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-similarity + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/similarity + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/multivalue + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/multivalue /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-multivalue + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/multivalue + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/benchmark + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/benchmark /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-benchmark + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/benchmark + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/analysis + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/analysis /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-analysis + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/analysis + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/del2dx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/del2dx /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-del2dx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/del2dx + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/tensor2dx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/tensor2dx /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-tensor2dx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/tensor2dx + mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/python3.9/site-packages/apbs + install -pm 755 apbs/tools/manip/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/ + pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/psize.py: updating + ln -s /usr/lib64/python3.9/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-psize.py + install -pm 755 redhat-linux-build/lib/_apbslib.so /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/ + rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/apbs ++ find /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 -type f '(' -name '*.a' ')' + for i in `find /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 -type f \( -name "*.a" \)` + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib/libiapbs.a + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 3.0.0-8.el9 --unique-debug-suffix -3.0.0-8.el9.x86_64 --unique-debug-src-base apbs-3.0.0-8.el9.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-analysis extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-analysis explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-benchmark explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-born extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-benchmark extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-born explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-coulomb extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-coulomb explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-del2dx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-del2dx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dx2mol extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dx2mol explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dx2uhbd extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dx2uhbd explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dxmath extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-dxmath explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mergedx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mergedx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mergedx2 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mergedx2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mgmesh extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-mgmesh explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-multivalue extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-multivalue explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-similarity extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-similarity explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-smooth extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-smooth explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-tensor2dx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-tensor2dx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-uhbd_asc2bin extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-uhbd_asc2bin explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-value extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/bin/apbs-value explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/libapbs.so.1 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/libapbs.so.1 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/_apbslib.so extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/python3.9/site-packages/apbs/_apbslib.so original debug info size: 4744kB, size after compression: 4276kB /usr/lib/rpm/sepdebugcrcfix: Updated 20 CRC32s, 0 CRC32s did match. 5153 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib/debug/usr/lib64/python3.9 using python3.9 Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/lib64/python3.9 using python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: apbs-3.0.0-8.el9.x86_64 Provides: apbs = 3.0.0-8.el9 apbs(x86-64) = 3.0.0-8.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmaloc.so.1()(64bit) rtld(GNU_HASH) Processing files: apbs-tools-3.0.0-8.el9.x86_64 warning: absolute symlink: /usr/bin/apbs-psize.py -> /usr/lib64/python3.9/site-packages/apbs/psize.py Provides: apbs-tools = 3.0.0-8.el9 apbs-tools(x86-64) = 3.0.0-8.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmaloc.so.1()(64bit) rtld(GNU_HASH) Processing files: apbs-libs-3.0.0-8.el9.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2VeG4H + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/doc/apbs-libs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/doc/apbs-libs + cp -pr apbs/README.md /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/doc/apbs-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.koWOS7 + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-libs + cp -pr apbs/LICENSE.md /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-libs + cp -pr apbs/COPYING /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-libs + cp -pr apbs/contrib/iapbs/iapbs-COPYING /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-libs + cp -pr apbs/contrib/iapbs/iapbs-LGPLv2 /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: apbs-libs = 3.0.0-8.el9 apbs-libs(x86-64) = 3.0.0-8.el9 libapbs.so.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmaloc.so.1()(64bit) libpython3.9.so.1.0()(64bit) python(abi) = 3.9 rtld(GNU_HASH) Processing files: apbs-devel-3.0.0-8.el9.x86_64 Provides: apbs-devel = 3.0.0-8.el9 apbs-devel(x86-64) = 3.0.0-8.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1()(64bit) Processing files: apbs-doc-3.0.0-8.el9.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.UUinDD + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/doc/apbs-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/doc/apbs-doc + cp -pr doc/_build/html /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/doc/apbs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.sINOOU + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-doc + cp -pr doc/apbs/license.rst /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64/usr/share/licenses/apbs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: apbs-doc = 3.0.0-8.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debugsource-3.0.0-8.el9.x86_64 Provides: apbs-debugsource = 3.0.0-8.el9 apbs-debugsource(x86-64) = 3.0.0-8.el9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debuginfo-3.0.0-8.el9.x86_64 Provides: apbs-debuginfo = 3.0.0-8.el9 apbs-debuginfo(x86-64) = 3.0.0-8.el9 debuginfo(build-id) = 22b5791115e1c90564888b4d7bf61cd603c0ed9f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-64) = 3.0.0-8.el9 Processing files: apbs-tools-debuginfo-3.0.0-8.el9.x86_64 Provides: apbs-tools-debuginfo = 3.0.0-8.el9 apbs-tools-debuginfo(x86-64) = 3.0.0-8.el9 debuginfo(build-id) = 183a782e7144ddf2dbce7a7751f6c353f94f195b debuginfo(build-id) = 185c5ba30f3c165ba2c49887305fa13b94b24a71 debuginfo(build-id) = 27661f2b6a39f1a0fbf3a4d686be2daaa1012bac debuginfo(build-id) = 30017f21bd6735fc8def0cbe0a058916149fc529 debuginfo(build-id) = 4520827fe7e3d319ff9dfcabfd9235e6fc5a79c4 debuginfo(build-id) = 48b7abcdf5353908edd9ba2d0a8dc75bdf89ed6b debuginfo(build-id) = 59ff80ee6d3a68f6765f1ea6ab17455ac3c79e7f debuginfo(build-id) = 5e1934d38714ad306985830df36987b702d36492 debuginfo(build-id) = 75dc9ad298f79b8822db99e20ca6e1ac5a6c23be debuginfo(build-id) = 91d2f4107b06e87e2a31fe6458731b0182280e5c debuginfo(build-id) = 95a3c193ce52aebbb9f401e8d7c0f0829f561dd6 debuginfo(build-id) = a43df35a80de58dfbfcb4135048bb359086bdc40 debuginfo(build-id) = b3f195ef1e1999ee6ac533c7e8b22ea947e0b384 debuginfo(build-id) = c61cdd4952447d2d762687ce1f6e36c61a949006 debuginfo(build-id) = cddaf9ec11c39d416d9d516aa2c0da288f963486 debuginfo(build-id) = d941812b1b3f7d7fc09f30214e5ce8dc7452a800 debuginfo(build-id) = e0703c7a75dcca9387a9167dbc6da19ab35cb004 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-64) = 3.0.0-8.el9 Processing files: apbs-libs-debuginfo-3.0.0-8.el9.x86_64 Provides: apbs-libs-debuginfo = 3.0.0-8.el9 apbs-libs-debuginfo(x86-64) = 3.0.0-8.el9 debuginfo(build-id) = 0d5c0ae6efa4d969da35eff8bb3ce312326b3162 debuginfo(build-id) = 15f34dad00b2a2471561ed80bd8c6363d5ebf38f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-64) = 3.0.0-8.el9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 Wrote: /builddir/build/RPMS/apbs-libs-debuginfo-3.0.0-8.el9.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-debugsource-3.0.0-8.el9.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-doc-3.0.0-8.el9.noarch.rpm Wrote: /builddir/build/RPMS/apbs-libs-3.0.0-8.el9.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-devel-3.0.0-8.el9.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-debuginfo-3.0.0-8.el9.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-tools-debuginfo-3.0.0-8.el9.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-3.0.0-8.el9.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-tools-3.0.0-8.el9.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.exoSz9 + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-8.el9.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild apbs-3.0.0-8.el9.src.rpm Finish: build phase for apbs-3.0.0-8.el9.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root/var/log/dnf.rpm.log /var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root/var/log/dnf.librepo.log /var/lib/mock/rhel+epel-9-x86_64-1684327744.476779/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/apbs-3.0.0-8.el9.src.rpm) Config(child) 3 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool