Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3df6ee12450a4ec9b5d8d7a336220794', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642809600 Wrote: /builddir/build/SRPMS/snakemake-6.13.1-3.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'aa362b857ce246548ad794c5c21567f7', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642809600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.haVhg5 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-6.13.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/snakemake-6.13.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-6.13.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -rf snakemake.egg-info + find snakemake/ -name '*.cpp' -print -delete + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + sed -i 1d snakemake/executors/jobscript.sh + sed -i s/python/python3/g tests/test_linting.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.0bgp7a + umask 022 + cd /builddir/build/BUILD + cd snakemake-6.13.1 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-6.13.1-3.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '963ca5485c7e4534890eabdf1d82ea13', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642809600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.fsclZI + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-6.13.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/snakemake-6.13.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-6.13.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -rf snakemake.egg-info + find snakemake/ -name '*.cpp' -print -delete + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + sed -i 1d snakemake/executors/jobscript.sh + sed -i s/python/python3/g tests/test_linting.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.k3tO1S + umask 022 + cd /builddir/build/BUILD + cd snakemake-6.13.1 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating snakemake.egg-info HOOK STDOUT: writing snakemake.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: adding license file 'AUTHORS.rst' HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing snakemake.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: adding license file 'AUTHORS.rst' HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/snakemake-6.13.1/snakemake.dist-info' HOOK STDOUT: adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") HOOK STDOUT: adding license file "AUTHORS.rst" (matched pattern "AUTHORS*") Handling wrapt from wheel metadata: Requires-Dist Requirement not satisfied: wrapt Handling requests from wheel metadata: Requires-Dist Requirement satisfied: requests (installed: requests 2.27.1) Handling ratelimiter from wheel metadata: Requires-Dist Requirement not satisfied: ratelimiter Handling pyyaml from wheel metadata: Requires-Dist Requirement satisfied: pyyaml (installed: pyyaml 6.0) Handling configargparse from wheel metadata: Requires-Dist Requirement satisfied: configargparse (installed: configargparse 1.5.2) Handling appdirs from wheel metadata: Requires-Dist Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling datrie from wheel metadata: Requires-Dist Requirement not satisfied: datrie Handling jsonschema from wheel metadata: Requires-Dist Requirement not satisfied: jsonschema Handling docutils from wheel metadata: Requires-Dist Requirement satisfied: docutils (installed: docutils 0.17.1) Handling gitpython from wheel metadata: Requires-Dist Requirement not satisfied: gitpython Handling psutil from wheel metadata: Requires-Dist Requirement not satisfied: psutil Handling nbformat from wheel metadata: Requires-Dist Requirement not satisfied: nbformat Handling toposort from wheel metadata: Requires-Dist Requirement not satisfied: toposort Handling connection-pool (>=0.0.3) from wheel metadata: Requires-Dist Requirement not satisfied: connection-pool (>=0.0.3) Handling pulp (>=2.0) from wheel metadata: Requires-Dist Requirement not satisfied: pulp (>=2.0) Handling smart-open (>=3.0) from wheel metadata: Requires-Dist Requirement not satisfied: smart-open (>=3.0) Handling filelock from wheel metadata: Requires-Dist Requirement not satisfied: filelock Handling stopit from wheel metadata: Requires-Dist Requirement not satisfied: stopit Handling tabulate from wheel metadata: Requires-Dist Requirement not satisfied: tabulate Handling oauth2client ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: oauth2client ; extra == 'google-cloud' Handling google-crc32c ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-crc32c ; extra == 'google-cloud' Handling google-api-python-client ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-api-python-client ; extra == 'google-cloud' Handling google-cloud-storage ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-cloud-storage ; extra == 'google-cloud' Handling slacker ; extra == 'messaging' from wheel metadata: Requires-Dist Ignoring alien requirement: slacker ; extra == 'messaging' Handling peppy ; extra == 'pep' from wheel metadata: Requires-Dist Ignoring alien requirement: peppy ; extra == 'pep' Handling eido ; extra == 'pep' from wheel metadata: Requires-Dist Ignoring alien requirement: eido ; extra == 'pep' Handling jinja2 ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: jinja2 ; extra == 'reports' Handling networkx ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: networkx ; extra == 'reports' Handling pygments ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: pygments ; extra == 'reports' Handling pygraphviz ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: pygraphviz ; extra == 'reports' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-6.13.1-3.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd0a40d6b678340098078cc39dd435663', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642809600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.aagewd + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-6.13.1 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/snakemake-6.13.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-6.13.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -rf snakemake.egg-info + find snakemake/ -name '*.cpp' -print -delete + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + sed -i 1d snakemake/executors/jobscript.sh + sed -i s/python/python3/g tests/test_linting.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.DYzW1y + umask 022 + cd /builddir/build/BUILD + cd snakemake-6.13.1 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating snakemake.egg-info HOOK STDOUT: writing snakemake.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: adding license file 'AUTHORS.rst' HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing snakemake.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: adding license file 'AUTHORS.rst' HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/snakemake-6.13.1/snakemake.dist-info' HOOK STDOUT: adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") HOOK STDOUT: adding license file "AUTHORS.rst" (matched pattern "AUTHORS*") Handling wrapt from wheel metadata: Requires-Dist Requirement satisfied: wrapt (installed: wrapt 1.13.3) Handling requests from wheel metadata: Requires-Dist Requirement satisfied: requests (installed: requests 2.27.1) Handling ratelimiter from wheel metadata: Requires-Dist Requirement satisfied: ratelimiter (installed: ratelimiter 1.2.0.post0) Handling pyyaml from wheel metadata: Requires-Dist Requirement satisfied: pyyaml (installed: pyyaml 6.0) Handling configargparse from wheel metadata: Requires-Dist Requirement satisfied: configargparse (installed: configargparse 1.5.2) Handling appdirs from wheel metadata: Requires-Dist Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling datrie from wheel metadata: Requires-Dist Requirement satisfied: datrie (installed: datrie 0.8.2) Handling jsonschema from wheel metadata: Requires-Dist Requirement satisfied: jsonschema (installed: jsonschema 3.2.0) Handling docutils from wheel metadata: Requires-Dist Requirement satisfied: docutils (installed: docutils 0.17.1) Handling gitpython from wheel metadata: Requires-Dist Requirement satisfied: gitpython (installed: gitpython 3.1.14) Handling psutil from wheel metadata: Requires-Dist Requirement satisfied: psutil (installed: psutil 5.8.0) Handling nbformat from wheel metadata: Requires-Dist Requirement satisfied: nbformat (installed: nbformat 5.0.8) Handling toposort from wheel metadata: Requires-Dist Requirement satisfied: toposort (installed: toposort 1.7) Handling connection-pool (>=0.0.3) from wheel metadata: Requires-Dist Requirement satisfied: connection-pool (>=0.0.3) (installed: connection-pool 0.0.3) Handling pulp (>=2.0) from wheel metadata: Requires-Dist Requirement satisfied: pulp (>=2.0) (installed: pulp 2.5.0) Handling smart-open (>=3.0) from wheel metadata: Requires-Dist Requirement satisfied: smart-open (>=3.0) (installed: smart-open 5.2.1) Handling filelock from wheel metadata: Requires-Dist Requirement satisfied: filelock (installed: filelock 3.3.1) Handling stopit from wheel metadata: Requires-Dist Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from wheel metadata: Requires-Dist Requirement satisfied: tabulate (installed: tabulate 0.8.9) Handling oauth2client ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: oauth2client ; extra == 'google-cloud' Handling google-crc32c ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-crc32c ; extra == 'google-cloud' Handling google-api-python-client ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-api-python-client ; extra == 'google-cloud' Handling google-cloud-storage ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-cloud-storage ; extra == 'google-cloud' Handling slacker ; extra == 'messaging' from wheel metadata: Requires-Dist Ignoring alien requirement: slacker ; extra == 'messaging' Handling peppy ; extra == 'pep' from wheel metadata: Requires-Dist Ignoring alien requirement: peppy ; extra == 'pep' Handling eido ; extra == 'pep' from wheel metadata: Requires-Dist Ignoring alien requirement: eido ; extra == 'pep' Handling jinja2 ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: jinja2 ; extra == 'reports' Handling networkx ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: networkx ; extra == 'reports' Handling pygments ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: pygments ; extra == 'reports' Handling pygraphviz ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: pygraphviz ; extra == 'reports' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-6.13.1-3.fc36.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9eb201b44a3444b0ab66f23dd15bf0a1', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1642921582.471710/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.9ryry868:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1642809600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.khrY01 + umask 022 + cd /builddir/build/BUILD + cd snakemake-6.13.1 + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv snakemake.dist-info/ removed 'snakemake.dist-info/LICENSE.md' removed 'snakemake.dist-info/AUTHORS.rst' removed 'snakemake.dist-info/METADATA' removed 'snakemake.dist-info/entry_points.txt' removed 'snakemake.dist-info/top_level.txt' removed directory 'snakemake.dist-info/' + '[' -f /usr/bin/python3 ']' + RPM_TOXENV=py310 + HOSTNAME=rpmbuild + /usr/bin/python3 -s /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 59.6.0) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running egg_info HOOK STDOUT: creating snakemake.egg-info HOOK STDOUT: writing snakemake.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: adding license file 'AUTHORS.rst' HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.37.0) HOOK STDOUT: running dist_info HOOK STDOUT: writing snakemake.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: adding license file 'AUTHORS.rst' HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/snakemake-6.13.1/snakemake.dist-info' HOOK STDOUT: adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") HOOK STDOUT: adding license file "AUTHORS.rst" (matched pattern "AUTHORS*") Handling wrapt from wheel metadata: Requires-Dist Requirement satisfied: wrapt (installed: wrapt 1.13.3) Handling requests from wheel metadata: Requires-Dist Requirement satisfied: requests (installed: requests 2.27.1) Handling ratelimiter from wheel metadata: Requires-Dist Requirement satisfied: ratelimiter (installed: ratelimiter 1.2.0.post0) Handling pyyaml from wheel metadata: Requires-Dist Requirement satisfied: pyyaml (installed: pyyaml 6.0) Handling configargparse from wheel metadata: Requires-Dist Requirement satisfied: configargparse (installed: configargparse 1.5.2) Handling appdirs from wheel metadata: Requires-Dist Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling datrie from wheel metadata: Requires-Dist Requirement satisfied: datrie (installed: datrie 0.8.2) Handling jsonschema from wheel metadata: Requires-Dist Requirement satisfied: jsonschema (installed: jsonschema 3.2.0) Handling docutils from wheel metadata: Requires-Dist Requirement satisfied: docutils (installed: docutils 0.17.1) Handling gitpython from wheel metadata: Requires-Dist Requirement satisfied: gitpython (installed: gitpython 3.1.14) Handling psutil from wheel metadata: Requires-Dist Requirement satisfied: psutil (installed: psutil 5.8.0) Handling nbformat from wheel metadata: Requires-Dist Requirement satisfied: nbformat (installed: nbformat 5.0.8) Handling toposort from wheel metadata: Requires-Dist Requirement satisfied: toposort (installed: toposort 1.7) Handling connection-pool (>=0.0.3) from wheel metadata: Requires-Dist Requirement satisfied: connection-pool (>=0.0.3) (installed: connection-pool 0.0.3) Handling pulp (>=2.0) from wheel metadata: Requires-Dist Requirement satisfied: pulp (>=2.0) (installed: pulp 2.5.0) Handling smart-open (>=3.0) from wheel metadata: Requires-Dist Requirement satisfied: smart-open (>=3.0) (installed: smart-open 5.2.1) Handling filelock from wheel metadata: Requires-Dist Requirement satisfied: filelock (installed: filelock 3.3.1) Handling stopit from wheel metadata: Requires-Dist Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from wheel metadata: Requires-Dist Requirement satisfied: tabulate (installed: tabulate 0.8.9) Handling oauth2client ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: oauth2client ; extra == 'google-cloud' Handling google-crc32c ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-crc32c ; extra == 'google-cloud' Handling google-api-python-client ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-api-python-client ; extra == 'google-cloud' Handling google-cloud-storage ; extra == 'google-cloud' from wheel metadata: Requires-Dist Ignoring alien requirement: google-cloud-storage ; extra == 'google-cloud' Handling slacker ; extra == 'messaging' from wheel metadata: Requires-Dist Ignoring alien requirement: slacker ; extra == 'messaging' Handling peppy ; extra == 'pep' from wheel metadata: Requires-Dist Ignoring alien requirement: peppy ; extra == 'pep' Handling eido ; extra == 'pep' from wheel metadata: Requires-Dist Ignoring alien requirement: eido ; extra == 'pep' Handling jinja2 ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: jinja2 ; extra == 'reports' Handling networkx ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: networkx ; extra == 'reports' Handling pygments ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: pygments ; extra == 'reports' Handling pygraphviz ; extra == 'reports' from wheel metadata: Requires-Dist Ignoring alien requirement: pygraphviz ; extra == 'reports' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.TEOu9c + umask 022 + cd /builddir/build/BUILD + '[' -f /builddir/build/BUILD/.package_note-snakemake-6.13.1-3.fc36.x86_64.ld ']' + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh snakemake 6.13.1-3.fc36 x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/.package_note-snakemake-6.13.1-3.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-6.13.1 + mkdir -p /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/.package_note-snakemake-6.13.1-3.fc36.x86_64.ld' + TMPDIR=/builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir + /usr/bin/python3 -m pip wheel --wheel-dir /builddir/build/BUILD/snakemake-6.13.1/pyproject-wheeldir --no-deps --use-pep517 --no-build-isolation --disable-pip-version-check --no-clean --progress-bar off --verbose . Processing /builddir/build/BUILD/snakemake-6.13.1 Preparing metadata (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/tmp1oehpry5 running dist_info creating /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info writing /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file '/builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-modern-metadata-_7uugxfd/snakemake.dist-info' adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") adding license file "AUTHORS.rst" (matched pattern "AUTHORS*") Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command /usr/bin/python3 /usr/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/tmppi_g7cau running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/script.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/stats.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake creating build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote creating build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/remote.py -> build/lib/snakemake/caching creating build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment creating build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting creating build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/report/report.html.jinja2 -> build/lib/snakemake/report copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '6.13.1' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests creating build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting creating build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment creating build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching creating build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common creating build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/report.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/stats.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/script.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake running install_egg_info running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-6.13.1-py3.10.egg-info running install_scripts adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*") adding license file "AUTHORS.rst" (matched pattern "AUTHORS*") creating build/bdist.linux-x86_64/wheel/snakemake-6.13.1.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir/pip-wheel-d0gc_q9w/tmp8go_sif4/snakemake-6.13.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/io.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/script.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/stats.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/remote.py' adding 'snakemake/common/__init__.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/ga4gh_tes.py' adding 'snakemake/executors/google_lifesciences.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/report.html.jinja2' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-6.13.1.dist-info/AUTHORS.rst' adding 'snakemake-6.13.1.dist-info/LICENSE.md' adding 'snakemake-6.13.1.dist-info/METADATA' adding 'snakemake-6.13.1.dist-info/WHEEL' adding 'snakemake-6.13.1.dist-info/entry_points.txt' adding 'snakemake-6.13.1.dist-info/top_level.txt' adding 'snakemake-6.13.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-6.13.1-py3-none-any.whl size=299589 sha256=6bc74cb888eef300b2e31ca4c2b6c6e60783f72a8043351fd609969d463a1277 Stored in directory: /builddir/.cache/pip/wheels/43/ed/c9/ed89063afb982565df43f2d2eaa65f5a318224698dcbc024bc Successfully built snakemake + pushd docs/ + mkdir -p _build/doctrees ~/build/BUILD/snakemake-6.13.1/docs ~/build/BUILD/snakemake-6.13.1 + mkdir -p _build/html + make -j2 html sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v4.3.1 myst v0.16.0: MdParserConfig(renderer='sphinx', commonmark_only=False, enable_extensions=['dollarmath'], dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', disable_syntax=[], url_schemes=['http', 'https', 'mailto', 'ftp'], heading_anchors=None, heading_slug_func=None, html_meta=[], footnote_transition=True, substitutions=[], sub_delimiters=['{', '}'], words_per_minute=200) building [mo]: targets for 0 po files that are out of date building [html]: targets for 42 source files that are out of date updating environment: [new config] 42 added, 0 changed, 0 removed reading sources... [ 2%] api_reference/internal/modules reading sources... [ 4%] api_reference/internal/snakemake reading sources... [ 7%] api_reference/internal/snakemake.remote reading sources... [ 9%] api_reference/internal/snakemake.report reading sources... [ 11%] api_reference/snakemake reading sources... [ 14%] api_reference/snakemake_utils reading sources... [ 16%] executing/caching reading sources... [ 19%] executing/cli reading sources... [ 21%] executing/cloud reading sources... [ 23%] executing/cluster reading sources... [ 26%] executing/grouping reading sources... [ 28%] executing/interoperability reading sources... [ 30%] executing/monitoring reading sources... [ 33%] executor_tutorial/azure_aks reading sources... [ 35%] executor_tutorial/google_lifesciences reading sources... [ 38%] executor_tutorial/tutorial reading sources... [ 40%] getting_started/installation reading sources... [ 42%] index reading sources... [ 45%] project_info/authors reading sources... [ 47%] project_info/citations reading sources... [ 50%] project_info/contributing reading sources... [ 52%] project_info/faq reading sources... [ 54%] project_info/history reading sources... [ 57%] project_info/license reading sources... [ 59%] project_info/more_resources reading sources... [ 61%] snakefiles/best_practices reading sources... [ 64%] snakefiles/configuration reading sources... [ 66%] snakefiles/deployment reading sources... [ 69%] snakefiles/foreign_wms reading sources... [ 71%] snakefiles/modularization reading sources... [ 73%] snakefiles/remote_files reading sources... [ 76%] snakefiles/reporting reading sources... [ 78%] snakefiles/rules reading sources... [ 80%] snakefiles/testing reading sources... [ 83%] snakefiles/utils reading sources... [ 85%] snakefiles/writing_snakefiles reading sources... [ 88%] tutorial/additional_features reading sources... [ 90%] tutorial/advanced reading sources... [ 92%] tutorial/basics reading sources... [ 95%] tutorial/setup reading sources... [ 97%] tutorial/short reading sources... [100%] tutorial/tutorial WARNING: autodoc: failed to import module 'conda' from module 'snakemake'; the following exception was raised: No module named 'snakemake.conda' /builddir/build/BUILD/snakemake-6.13.1/snakemake/exceptions.py:docstring of snakemake.exceptions.print_exception:6: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'gui' from module 'snakemake'; the following exception was raised: No module named 'flask' /builddir/build/BUILD/snakemake-6.13.1/snakemake/io.py:docstring of snakemake.io.expand:5: WARNING: Unexpected indentation. /builddir/build/BUILD/snakemake-6.13.1/snakemake/io.py:docstring of snakemake.io.expand:3: WARNING: Inline emphasis start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/io.py:docstring of snakemake.io.expand:7: WARNING: Block quote ends without a blank line; unexpected unindent. /builddir/build/BUILD/snakemake-6.13.1/snakemake/io.py:docstring of snakemake.io.expand:8: WARNING: Inline strong start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/io.py:docstring of snakemake.io.limit:5: WARNING: Unexpected indentation. /builddir/build/BUILD/snakemake-6.13.1/snakemake/io.py:docstring of snakemake.io.limit:3: WARNING: Inline strong start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/io.py:docstring of snakemake.io.report:3: WARNING: Inline emphasis start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/io.py:docstring of snakemake.io.report:10: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'singularity' from module 'snakemake'; the following exception was raised: No module named 'snakemake.singularity' /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace:6: WARNING: Inline strong start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace:6: WARNING: Inline emphasis start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace.wildcard_pattern:1: WARNING: Inline strong start-string without end-string. WARNING: autodoc: failed to import module 'FTP' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/FTP.py", line 20, in import ftputil ModuleNotFoundError: No module named 'ftputil' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/FTP.py", line 23, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'ftputil' must be installed to use FTP remote() file functionality. No module named 'ftputil' WARNING: autodoc: failed to import module 'GS' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/GS.py", line 19, in import google.cloud ModuleNotFoundError: No module named 'google' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/GS.py", line 24, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'google-cloud-sdk' and `google-crc32c` need to be installed to use GS remote() file functionality. No module named 'google' WARNING: autodoc: failed to import module 'NCBI' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/NCBI.py", line 21, in from Bio import Entrez ModuleNotFoundError: No module named 'Bio' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/NCBI.py", line 23, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python package 'biopython' needs to be installed to use NCBI Entrez remote() file functionality. No module named 'Bio' WARNING: autodoc: failed to import module 'S3Mocked' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/S3Mocked.py", line 26, in from moto import mock_s3 ModuleNotFoundError: No module named 'moto' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/S3Mocked.py", line 28, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'moto' and boto3' need to be installed to use S3Mocked remote() file functionality. No module named 'moto' WARNING: autodoc: failed to import module 'SFTP' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/SFTP.py", line 15, in import pysftp ModuleNotFoundError: No module named 'pysftp' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/SFTP.py", line 17, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'pysftp' must be installed to use SFTP remote() file functionality. No module named 'pysftp' WARNING: autodoc: failed to import module 'XRootD' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/XRootD.py", line 14, in from XRootD import client ModuleNotFoundError: No module named 'XRootD' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/XRootD.py", line 17, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'XRootD' must be installed to use XRootD remote() file functionality. No module named 'XRootD' WARNING: autodoc: failed to import module 'dropbox' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/dropbox.py", line 15, in import dropbox # The official Dropbox API library ModuleNotFoundError: No module named 'dropbox' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/dropbox.py", line 17, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'dropbox' must be installed to use Dropbox remote() file functionality. No module named 'dropbox' WARNING: autodoc: failed to import module 'gfal' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/gfal.py", line 21, in raise WorkflowError( snakemake.exceptions.WorkflowError: The gfal-* commands need to be available for gfal remote support. WARNING: autodoc: failed to import module 'gridftp' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/gridftp.py", line 18, in raise WorkflowError( snakemake.exceptions.WorkflowError: The globus-url-copy command has to be available for gridftp remote support. WARNING: autodoc: failed to import module 'iRODS' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/iRODS.py", line 20, in from irods.session import iRODSSession ModuleNotFoundError: No module named 'irods' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/iRODS.py", line 26, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'python-irodsclient' must be installed to use iRODS remote() file functionality. No module named 'irods' WARNING: autodoc: failed to import module 'webdav' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/webdav.py", line 18, in import aioeasywebdav ModuleNotFoundError: No module named 'aioeasywebdav' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/sphinx/ext/autodoc/importer.py", line 70, in import_module return importlib.import_module(modname) File "/usr/lib64/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/builddir/build/BUILD/snakemake-6.13.1/snakemake/remote/webdav.py", line 21, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'aioeasywebdav' and 'asyncio' must be present to use WebDAV remote() file functionality. No module named 'aioeasywebdav' /builddir/build/BUILD/snakemake-6.13.1/docs/api_reference/internal/snakemake.remote.rst:5: WARNING: duplicate label submodules, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/api_reference/internal/snakemake.rst /builddir/build/BUILD/snakemake-6.13.1/docs/api_reference/internal/snakemake.remote.rst:121: WARNING: duplicate label module contents, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/api_reference/internal/snakemake.rst /builddir/build/BUILD/snakemake-6.13.1/docs/api_reference/internal/snakemake.report.rst:5: WARNING: duplicate label module contents, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/api_reference/internal/snakemake.remote.rst looking for now-outdated files... none found pickling environment... /builddir/build/BUILD/snakemake-6.13.1/snakemake/__init__.py:docstring of snakemake.snakemake:1: WARNING: duplicate object description of snakemake.snakemake, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils:1: WARNING: duplicate object description of snakemake.utils, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.AlwaysQuotedFormatter:1: WARNING: duplicate object description of snakemake.utils.AlwaysQuotedFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace:1: WARNING: duplicate object description of snakemake.utils.Paramspace, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace:6: WARNING: Inline strong start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace:6: WARNING: Inline emphasis start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace.instance:1: WARNING: duplicate object description of snakemake.utils.Paramspace.instance, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace.instance_patterns:1: WARNING: duplicate object description of snakemake.utils.Paramspace.instance_patterns, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace.wildcard_pattern:1: WARNING: duplicate object description of snakemake.utils.Paramspace.wildcard_pattern, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.Paramspace.wildcard_pattern:1: WARNING: Inline strong start-string without end-string. /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.QuotedFormatter:1: WARNING: duplicate object description of snakemake.utils.QuotedFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.R:1: WARNING: duplicate object description of snakemake.utils.R, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.SequenceFormatter:1: WARNING: duplicate object description of snakemake.utils.SequenceFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.SequenceFormatter.format_element:1: WARNING: duplicate object description of snakemake.utils.SequenceFormatter.format_element, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.argvquote:1: WARNING: duplicate object description of snakemake.utils.argvquote, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.available_cpu_count:1: WARNING: duplicate object description of snakemake.utils.available_cpu_count, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.cmd_exe_quote:1: WARNING: duplicate object description of snakemake.utils.cmd_exe_quote, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.find_bash_on_windows:1: WARNING: duplicate object description of snakemake.utils.find_bash_on_windows, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.format:1: WARNING: duplicate object description of snakemake.utils.format, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.linecount:1: WARNING: duplicate object description of snakemake.utils.linecount, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.listfiles:1: WARNING: duplicate object description of snakemake.utils.listfiles, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.makedirs:1: WARNING: duplicate object description of snakemake.utils.makedirs, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.min_version:1: WARNING: duplicate object description of snakemake.utils.min_version, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.os_sync:1: WARNING: duplicate object description of snakemake.utils.os_sync, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.read_job_properties:1: WARNING: duplicate object description of snakemake.utils.read_job_properties, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.report:1: WARNING: duplicate object description of snakemake.utils.report, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.simplify_path:1: WARNING: duplicate object description of snakemake.utils.simplify_path, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.update_config:1: WARNING: duplicate object description of snakemake.utils.update_config, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/snakemake/utils.py:docstring of snakemake.utils.validate:1: WARNING: duplicate object description of snakemake.utils.validate, other instance in api_reference/internal/snakemake, use :noindex: for one of them /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cli.rst:101: WARNING: duplicate label profiles, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cli.rst /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cloud.rst:72: WARNING: duplicate label kubernetes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cli.rst /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cloud.rst:376: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cli.rst /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cluster.rst:5: WARNING: duplicate label cluster, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cli.rst /builddir/build/BUILD/snakemake-6.13.1/docs/executing/monitoring.rst:5: WARNING: duplicate label monitoring, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/monitoring.rst /builddir/build/BUILD/snakemake-6.13.1/docs/executor_tutorial/azure_aks.rst:184: WARNING: Unexpected indentation. /builddir/build/BUILD/snakemake-6.13.1/docs/executor_tutorial/google_lifesciences.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executor_tutorial/azure_aks.rst /builddir/build/BUILD/snakemake-6.13.1/docs/index.rst:: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:3: WARNING: Non-consecutive header level increase; 1 to 3 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:6: WARNING: Non-consecutive header level increase; 1 to 3 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:453: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:474: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:480: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:506: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:510: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:516: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:525: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:533: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:588: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:595: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:607: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:615: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:638: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:642: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:652: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:659: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:674: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:679: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:686: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:701: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:740: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:747: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:762: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:769: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:777: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:781: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:790: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:796: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:803: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:814: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:831: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:835: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:862: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:867: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:888: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:895: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:909: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:920: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:933: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:942: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:967: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:976: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1003: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1009: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1024: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1030: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1072: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1076: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1132: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1149: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1155: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1189: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1236: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1246: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1255: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1266: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1290: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1304: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1313: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1331: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1340: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1345: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1371: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1384: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1390: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1400: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1420: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1474: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1490: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1499: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1522: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1542: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1573: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1606: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1627: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1646: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1675: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1775: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1784: WARNING: Non-consecutive header level increase; 2 to 4 [myst.header] /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:23: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:30: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:42: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:49: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:54: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:62: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:69: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:74: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:83: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:88: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:103: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:108: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:120: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:130: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:137: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:142: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:149: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:156: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:168: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:177: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:183: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:195: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:202: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:207: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:214: WARNING: duplicate label 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/builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1640: WARNING: duplicate label changed, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1646: WARNING: duplicate label added, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1666: WARNING: duplicate label changed, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1675: WARNING: duplicate label added, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1694: WARNING: duplicate label added, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1708: WARNING: duplicate label changed, other instance in 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/builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1775: WARNING: duplicate label added, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/CHANGELOG.md:1784: WARNING: duplicate label changed, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/project_info/history.md /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/best_practices.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/configuration.rst:52: WARNING: malformed hyperlink target. /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/configuration.rst:5: WARNING: duplicate label configuration, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/configuration.rst:74: WARNING: duplicate label environment variables, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/deployment.rst:267: WARNING: duplicate label singularity, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cli.rst /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/modularization.rst:7: WARNING: Duplicate explicit target name: "cwl". /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/reporting.rst:5: WARNING: duplicate label reports, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executing/cli.rst /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/rules.rst:305: WARNING: duplicate label resources, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/index.rst /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/rules.rst:1078: 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exercise, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/basics.rst /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/basics.rst:490: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/basics.rst /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/basics.rst:498: WARNING: duplicate label summary, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/advanced.rst /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/setup.rst:5: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/executor_tutorial/google_lifesciences.rst /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/short.rst:344: WARNING: duplicate label threads, other instance in /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/rules.rst /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/short.rst:376: WARNING: duplicate label step 2, other instance in 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[ 2%] api_reference/internal/modules writing output... [ 4%] api_reference/internal/snakemake writing output... [ 7%] api_reference/internal/snakemake.remote writing output... [ 9%] api_reference/internal/snakemake.report writing output... [ 11%] api_reference/snakemake writing output... [ 14%] api_reference/snakemake_utils writing output... [ 16%] executing/caching writing output... [ 19%] executing/cli writing output... [ 21%] executing/cloud writing output... [ 23%] executing/cluster writing output... [ 26%] executing/grouping writing output... [ 28%] executing/interoperability writing output... [ 30%] executing/monitoring writing output... [ 33%] executor_tutorial/azure_aks writing output... [ 35%] executor_tutorial/google_lifesciences writing output... [ 38%] executor_tutorial/tutorial writing output... [ 40%] getting_started/installation writing output... [ 42%] index writing output... [ 45%] project_info/authors writing output... [ 47%] project_info/citations writing output... [ 50%] project_info/contributing writing output... [ 52%] project_info/faq writing output... [ 54%] project_info/history writing output... [ 57%] project_info/license writing output... [ 59%] project_info/more_resources writing output... [ 61%] snakefiles/best_practices writing output... [ 64%] snakefiles/configuration writing output... [ 66%] snakefiles/deployment writing output... [ 69%] snakefiles/foreign_wms writing output... [ 71%] snakefiles/modularization writing output... [ 73%] snakefiles/remote_files writing output... [ 76%] snakefiles/reporting writing output... [ 78%] snakefiles/rules writing output... [ 80%] snakefiles/testing writing output... [ 83%] snakefiles/utils writing output... [ 85%] snakefiles/writing_snakefiles writing output... [ 88%] tutorial/additional_features writing output... [ 90%] tutorial/advanced writing output... [ 92%] tutorial/basics writing output... [ 95%] tutorial/setup writing output... [ 97%] tutorial/short writing output... [100%] tutorial/tutorial generating indices... /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: snakefiles_tabular_configuration /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: snakefiles_peps /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/foreign_wms.rst:30: WARNING: undefined label: snakefiles-local-rule /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/rules.rst:381: WARNING: undefined label: user_manual-snakemake_options /builddir/build/BUILD/snakemake-6.13.1/docs/snakefiles/rules.rst:881: WARNING: undefined label: snakefiles_external-scripts /builddir/build/BUILD/snakemake-6.13.1/docs/tutorial/basics.rst:392: WARNING: undefined label: .. _snakefiles-rules genindex py-modindex done highlighting module code... [ 3%] snakemake highlighting module code... [ 7%] snakemake.benchmark highlighting module code... 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[100%] tests/test_report/expected-results/report.html copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 365 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. + popd ~/build/BUILD/snakemake-6.13.1 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ShTJBN + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 + '[' -f /builddir/build/BUILD/.package_note-snakemake-6.13.1-3.fc36.x86_64.ld ']' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/.package_note-snakemake-6.13.1-3.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-6.13.1 ++ xargs basename --multiple ++ ls /builddir/build/BUILD/snakemake-6.13.1/pyproject-wheeldir/snakemake-6.13.1-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=snakemake==6.13.1 + TMPDIR=/builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-6.13.1/pyproject-wheeldir snakemake==6.13.1 Using pip 21.3.1 from /usr/lib/python3.10/site-packages/pip (python 3.10) Looking in links: /builddir/build/BUILD/snakemake-6.13.1/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-6.13.1-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin/snakemake to 755 changing mode of /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin/snakemake-bash-completion to 755 Successfully installed snakemake-6.13.1 + '[' -d /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin ']' + '[' -f /usr/bin/pathfix3.10.py ']' + pathfix=/usr/bin/pathfix3.10.py + '[' -z s ']' + shebang_flags=-kas + /usr/bin/pathfix3.10.py -pni /usr/bin/python3 -kas /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin/snakemake-bash-completion /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin/snakemake: updating /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin/snakemake-bash-completion: updating + rm -rfv /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages ']' + site_dirs+=("/usr/lib/python3.10/site-packages") + '[' /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib64/python3.10/site-packages '!=' /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages ']' + '[' -d /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib64/python3.10/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 --record /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/RECORD --output /builddir/build/BUILD/pyproject-record + rm -fv /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/RECORD removed '/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages/snakemake-6.13.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/pyproject-files --output-modules /builddir/build/BUILD/pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 --sitelib /usr/lib/python3.10/site-packages --sitearch /usr/lib64/python3.10/site-packages --python-version 3.10 --pyproject-record /builddir/build/BUILD/pyproject-record snakemake + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10 using python3.10 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.3jCZB4 + umask 022 + cd /builddir/build/BUILD + '[' -f /builddir/build/BUILD/.package_note-snakemake-6.13.1-3.fc36.x86_64.ld ']' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/.package_note-snakemake-6.13.1-3.fc36.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-6.13.1 + export PYTHONPATH=/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/.package_note-snakemake-6.13.1-3.fc36.x86_64.ld' + PATH=/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/lib/python3.10/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-6.13.1/.pyproject-builddir' + /usr/bin/pytest --ignore tests/test_google_lifesciences.py --deselect tests/test_tibanna.py --deselect tests/test_tes.py ============================= test session starts ============================== platform linux -- Python 3.10.2, pytest-6.2.5, py-1.11.0, pluggy-1.0.0 rootdir: /builddir/build/BUILD/snakemake-6.13.1 plugins: requests-mock-1.8.0, cov-3.0.0 collected 57 items / 2 deselected / 55 selected tests/test_expand.py .. [ 3%] tests/test_io.py .. [ 7%] tests/test_kubernetes.py sssss [ 16%] tests/test_linting.py ............................ [ 67%] tests/test_schema.py ... [ 72%] tests/test_script.py ............... [100%] ================= 50 passed, 5 skipped, 2 deselected in 8.84s ================== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-6.13.1-3.fc36.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.2Hwax0 + umask 022 + cd /builddir/build/BUILD + cd snakemake-6.13.1 + DOCDIR=/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/doc/snakemake + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/doc/snakemake + cp -pr README.md /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/doc/snakemake + RPM_EC=0 ++ jobs -p + exit 0 Provides: python3.10dist(snakemake) = 6.13.1 python3dist(snakemake) = 6.13.1 snakemake = 6.13.1-3.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3 python(abi) = 3.10 python3.10dist(appdirs) python3.10dist(configargparse) python3.10dist(connection-pool) >= 0.0.3 python3.10dist(datrie) python3.10dist(docutils) python3.10dist(filelock) python3.10dist(gitpython) python3.10dist(jsonschema) python3.10dist(nbformat) python3.10dist(psutil) python3.10dist(pulp) >= 2 python3.10dist(pyyaml) python3.10dist(ratelimiter) python3.10dist(requests) python3.10dist(smart-open) >= 3 python3.10dist(stopit) python3.10dist(tabulate) python3.10dist(toposort) python3.10dist(wrapt) Processing files: snakemake-doc-6.13.1-3.fc36.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.tqPTQN + umask 022 + cd /builddir/build/BUILD + cd snakemake-6.13.1 + DOCDIR=/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/doc/snakemake-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/doc/snakemake-doc + cp -pr docs/_build/html /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/doc/snakemake-doc + cp -pr docs/_build/doctrees /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/doc/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.8negsX + umask 022 + cd /builddir/build/BUILD + cd snakemake-6.13.1 + LICENSEDIR=/builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/licenses/snakemake-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/licenses/snakemake-doc + cp -pr LICENSE.md /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64/usr/share/licenses/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: snakemake-doc = 6.13.1-3.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 Wrote: /builddir/build/SRPMS/snakemake-6.13.1-3.fc36.src.rpm Wrote: /builddir/build/RPMS/snakemake-6.13.1-3.fc36.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-doc-6.13.1-3.fc36.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.EoUJRu + umask 022 + cd /builddir/build/BUILD + cd snakemake-6.13.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-6.13.1-3.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0