Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d6' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6926247-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.70 PID: 6179 Logging PID: 6180 Task: {'appstream': False, 'background': True, 'build_id': 6926247, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '6c5333a091cc255ad0844a6d998ffe469a5fdedd', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:29/snakemake', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'snakemake', 'package_version': '8.2.3-1', 'project_dirname': 'automatic-obsoletes:pr:29', 'project_name': 'automatic-obsoletes', 'project_owner': 'torsava', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/packit', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/packit', 'tags': [], 'task_id': '6926247-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:29/snakemake /var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:29/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake'... Running: git checkout 6c5333a091cc255ad0844a6d998ffe469a5fdedd -- cmd: ['git', 'checkout', '6c5333a091cc255ad0844a6d998ffe469a5fdedd', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake rc: 0 stdout: stderr: Note: switching to '6c5333a091cc255ad0844a6d998ffe469a5fdedd'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 6c5333a automatic import of snakemake Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-8.2.3.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-8.2.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes:pr:29/snakemake/snakemake-8.2.3.tar.gz/md5/22a6072270570587b335973da41d33f3/snakemake-8.2.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 8427k 100 8427k 0 0 21.4M 0 --:--:-- --:--:-- --:--:-- 21.4M INFO: Reading stdout from command: md5sum snakemake-8.2.3.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1705809069.456248 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1705809069.456248 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake/snakemake.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1705809069.456248/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1705809069.456248/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/c80e53f3523d878ef903ebd4134a39f38b6e0fadf371c53a005e82fcce81b7c3/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/c80e53f3523d878ef903ebd4134a39f38b6e0fadf371c53a005e82fcce81b7c3/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 15 MB/s | 14 MB 00:00 fedora 26 MB/s | 73 MB 00:02 Last metadata expiration check: 0:00:02 ago on Sun Jan 21 03:51:21 2024. Dependencies resolved. ================================================================================ Package Architecture Version Repository Size ================================================================================ Installing: dnf5 x86_64 5.1.11-1.fc40 fedora 551 k dnf5-plugins x86_64 5.1.11-1.fc40 fedora 333 k Installing dependencies: fmt x86_64 10.2.1-1.fc40 fedora 125 k libdnf5 x86_64 5.1.11-1.fc40 fedora 926 k libdnf5-cli x86_64 5.1.11-1.fc40 fedora 219 k sdbus-cpp x86_64 1.4.0-1.fc40 fedora 109 k Transaction Summary ================================================================================ Install 6 Packages Total download size: 2.2 M Installed size: 6.1 M Downloading Packages: (1/6): fmt-10.2.1-1.fc40.x86_64.rpm 703 kB/s | 125 kB 00:00 (2/6): dnf5-plugins-5.1.11-1.fc40.x86_64.rpm 1.7 MB/s | 333 kB 00:00 (3/6): libdnf5-cli-5.1.11-1.fc40.x86_64.rpm 5.3 MB/s | 219 kB 00:00 (4/6): dnf5-5.1.11-1.fc40.x86_64.rpm 2.2 MB/s | 551 kB 00:00 (5/6): sdbus-cpp-1.4.0-1.fc40.x86_64.rpm 2.5 MB/s | 109 kB 00:00 (6/6): libdnf5-5.1.11-1.fc40.x86_64.rpm 8.4 MB/s | 926 kB 00:00 -------------------------------------------------------------------------------- Total 7.0 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-1.fc40.x86_64 1/6 Installing : libdnf5-5.1.11-1.fc40.x86_64 2/6 Installing : libdnf5-cli-5.1.11-1.fc40.x86_64 3/6 Installing : dnf5-5.1.11-1.fc40.x86_64 4/6 Installing : sdbus-cpp-1.4.0-1.fc40.x86_64 5/6 Installing : dnf5-plugins-5.1.11-1.fc40.x86_64 6/6 Running scriptlet: dnf5-plugins-5.1.11-1.fc40.x86_64 6/6 Installed: dnf5-5.1.11-1.fc40.x86_64 dnf5-plugins-5.1.11-1.fc40.x86_64 fmt-10.2.1-1.fc40.x86_64 libdnf5-5.1.11-1.fc40.x86_64 libdnf5-cli-5.1.11-1.fc40.x86_64 sdbus-cpp-1.4.0-1.fc40.x86_64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1705809069.456248/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.11-1.fc40.x86_64 dnf5-plugins-5.1.11-1.fc40.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 5.6 MiB/s | 20.6 MiB | 00m04s Copr repository 100% | 22.1 MiB/s | 4.0 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.21-2.fc40 fedora 8.2 MiB bzip2 x86_64 1.0.8-16.fc39 fedora 91.5 KiB coreutils x86_64 9.4-3.fc40 fedora 5.8 MiB cpio x86_64 2.14-5.fc40 fedora 1.0 MiB diffutils x86_64 3.10-3.fc39 fedora 1.6 MiB fedora-release-common noarch 40-0.29 fedora 19.1 KiB findutils x86_64 1:4.9.0-6.fc40 fedora 1.5 MiB gawk x86_64 5.3.0-1.fc40 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.38.9000-33.fc40 fedora 0.0 B grep x86_64 3.11-5.fc40 fedora 1.0 MiB gzip x86_64 1.12-6.fc39 fedora 372.0 KiB info x86_64 7.1-1.fc40 fedora 373.6 KiB patch x86_64 2.7.6-22.fc39 fedora 254.6 KiB redhat-rpm-config noarch 280-1.fc40 fedora 183.2 KiB rpm-build x86_64 4.19.1-2.fc40 copr_base 181.2 KiB sed x86_64 4.8-14.fc39 fedora 797.8 KiB shadow-utils x86_64 2:4.14.0-2.fc40 fedora 4.0 MiB tar x86_64 2:1.35-2.fc40 fedora 3.0 MiB unzip x86_64 6.0-62.fc39 fedora 394.6 KiB util-linux x86_64 2.39.3-2.fc40 fedora 3.5 MiB which x86_64 2.21-40.fc39 fedora 80.1 KiB xz x86_64 5.4.5-1.fc40 fedora 2.0 MiB Installing dependencies: alternatives x86_64 1.26-1.fc40 fedora 62.3 KiB ansible-srpm-macros noarch 1-12.fc40 fedora 35.7 KiB audit-libs x86_64 4.0-2.fc40 copr_base 311.3 KiB authselect x86_64 1.5.0-1.fc40 fedora 156.5 KiB authselect-libs x86_64 1.5.0-1.fc40 fedora 987.8 KiB basesystem noarch 11-18.fc39 fedora 0.0 B binutils x86_64 2.41-26.fc40 fedora 26.4 MiB binutils-gold x86_64 2.41-26.fc40 fedora 2.0 MiB bzip2-libs x86_64 1.0.8-16.fc39 fedora 80.6 KiB ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 fedora 2.3 MiB coreutils-common x86_64 9.4-3.fc40 fedora 11.4 MiB cracklib x86_64 2.9.11-2.fc39 fedora 246.6 KiB crypto-policies noarch 20231204-1.git1e3a2e4.fc40 fedora 149.3 KiB curl x86_64 8.5.0-1.fc40 fedora 826.3 KiB cyrus-sasl-lib x86_64 2.1.28-17.fc40 fedora 2.3 MiB debugedit x86_64 5.0-12.fc40 fedora 198.8 KiB dwz x86_64 0.15-3.fc39 fedora 282.9 KiB ed x86_64 1.19-4.fc39 fedora 140.2 KiB efi-srpm-macros noarch 5-9.fc39 fedora 40.1 KiB elfutils x86_64 0.190-4.fc40 fedora 2.8 MiB elfutils-debuginfod-client x86_64 0.190-4.fc40 fedora 60.7 KiB elfutils-default-yama-scope noarch 0.190-4.fc40 fedora 1.8 KiB elfutils-libelf x86_64 0.190-4.fc40 fedora 1.0 MiB elfutils-libs x86_64 0.190-4.fc40 fedora 690.0 KiB fedora-gpg-keys noarch 40-0.2 fedora 123.2 KiB fedora-release noarch 40-0.29 fedora 0.0 B fedora-release-identity-basic noarch 40-0.29 fedora 694.0 B fedora-repos noarch 40-0.2 fedora 4.9 KiB fedora-repos-rawhide noarch 40-0.2 fedora 2.2 KiB file x86_64 5.45-2.fc40 copr_base 103.5 KiB file-libs x86_64 5.45-2.fc40 copr_base 9.9 MiB filesystem x86_64 3.18-6.fc39 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 55.3 KiB forge-srpm-macros noarch 0.2.0-1.fc40 fedora 37.4 KiB fpc-srpm-macros noarch 1.3-8.fc39 fedora 144.0 B gdb-minimal x86_64 14.1-4.fc40 fedora 12.3 MiB gdbm x86_64 1:1.23-4.fc39 fedora 472.5 KiB gdbm-libs x86_64 1:1.23-4.fc39 fedora 125.7 KiB ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 369.0 B glibc x86_64 2.38.9000-33.fc40 fedora 6.7 MiB glibc-common x86_64 2.38.9000-33.fc40 fedora 1.0 MiB glibc-gconv-extra x86_64 2.38.9000-33.fc40 fedora 7.8 MiB gmp x86_64 1:6.2.1-5.fc39 fedora 798.5 KiB gnat-srpm-macros noarch 6-3.fc39 fedora 1.0 KiB go-srpm-macros noarch 3.3.1-1.fc40 fedora 60.6 KiB jansson x86_64 2.13.1-7.fc39 fedora 84.3 KiB kernel-srpm-macros noarch 1.0-20.fc39 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-1.fc40 fedora 54.3 KiB krb5-libs x86_64 1.21.2-3.fc40 fedora 2.3 MiB libacl x86_64 2.3.1-11.fc40 fedora 39.9 KiB libarchive x86_64 3.7.2-1.fc40 fedora 922.5 KiB libattr x86_64 2.5.2-1.fc40 fedora 28.5 KiB libblkid x86_64 2.39.3-2.fc40 fedora 228.9 KiB libbrotli x86_64 1.1.0-2.fc40 copr_base 829.6 KiB libcap x86_64 2.69-1.fc40 fedora 224.6 KiB libcap-ng x86_64 0.8.4-3.fc40 copr_base 73.1 KiB libcom_err x86_64 1.47.0-2.fc39 fedora 67.1 KiB libcurl x86_64 8.5.0-1.fc40 fedora 784.6 KiB libeconf x86_64 0.5.2-1.fc40 fedora 55.9 KiB libevent x86_64 2.1.12-9.fc39 fedora 899.2 KiB libfdisk x86_64 2.39.3-2.fc40 fedora 363.0 KiB libffi x86_64 3.4.4-5.fc40 fedora 81.5 KiB libgcc x86_64 14.0.1-0.1.fc40 fedora 270.6 KiB libgomp x86_64 14.0.1-0.1.fc40 fedora 515.8 KiB libidn2 x86_64 2.3.4-3.fc39 fedora 323.0 KiB libmount x86_64 2.39.3-2.fc40 fedora 352.1 KiB libnghttp2 x86_64 1.58.0-1.fc40 fedora 170.0 KiB libnsl2 x86_64 2.0.0-6.fc39 fedora 57.9 KiB libpkgconf x86_64 1.9.5-2.fc39 fedora 78.1 KiB libpsl x86_64 0.21.5-1.fc40 fedora 80.5 KiB libpwquality x86_64 1.4.5-7.fc39 copr_base 417.4 KiB libselinux x86_64 3.6-2.fc40 copr_base 177.0 KiB libsemanage x86_64 3.6-1.fc40 fedora 293.5 KiB libsepol x86_64 3.6-1.fc40 fedora 810.0 KiB libsmartcols x86_64 2.39.3-2.fc40 fedora 140.1 KiB libssh x86_64 0.10.6-2.fc40 fedora 517.2 KiB libssh-config noarch 0.10.6-2.fc40 fedora 277.0 B libstdc++ x86_64 14.0.1-0.1.fc40 fedora 2.8 MiB libtasn1 x86_64 4.19.0-3.fc39 fedora 175.6 KiB libtirpc x86_64 1.3.4-1.rc1.fc40 fedora 202.8 KiB libunistring x86_64 1.1-5.fc40 fedora 1.7 MiB libutempter x86_64 1.2.1-10.fc39 fedora 57.6 KiB libuuid x86_64 2.39.3-2.fc40 fedora 37.5 KiB libverto x86_64 0.3.2-6.fc39 fedora 29.4 KiB libxcrypt x86_64 4.4.36-4.fc40 fedora 262.8 KiB libxml2 x86_64 2.12.4-1.fc40 fedora 1.7 MiB libzstd x86_64 1.5.5-4.fc39 fedora 772.0 KiB lua-libs x86_64 5.4.6-3.fc39 fedora 289.0 KiB lua-srpm-macros noarch 1-9.fc39 fedora 1.3 KiB lz4-libs x86_64 1.9.4-4.fc39 fedora 133.3 KiB mpfr x86_64 4.2.1-1.fc40 fedora 820.1 KiB ncurses-base noarch 6.4-9.20240113.fc40 fedora 326.2 KiB ncurses-libs x86_64 6.4-9.20240113.fc40 fedora 963.1 KiB ocaml-srpm-macros noarch 9-1.fc40 fedora 1.9 KiB openblas-srpm-macros noarch 2-14.fc39 fedora 104.0 B openldap x86_64 2.6.6-1.fc39 fedora 641.5 KiB openssl-libs x86_64 1:3.1.4-1.fc40 fedora 7.8 MiB p11-kit x86_64 0.25.3-1.fc40 fedora 2.4 MiB p11-kit-trust x86_64 0.25.3-1.fc40 fedora 459.4 KiB package-notes-srpm-macros noarch 0.5-9.fc39 fedora 1.6 KiB pam x86_64 1.5.3-9.fc40 fedora 1.7 MiB pam-libs x86_64 1.5.3-9.fc40 fedora 134.8 KiB pcre2 x86_64 10.42-2.fc40 fedora 633.4 KiB pcre2-syntax noarch 10.42-2.fc40 fedora 235.1 KiB perl-srpm-macros noarch 1-51.fc39 fedora 861.0 B pkgconf x86_64 1.9.5-2.fc39 fedora 83.7 KiB pkgconf-m4 noarch 1.9.5-2.fc39 fedora 13.9 KiB pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 989.0 B popt x86_64 1.19-3.fc39 fedora 136.8 KiB publicsuffix-list-dafsa noarch 20240107-1.fc40 fedora 67.5 KiB pyproject-srpm-macros noarch 1.11.0-1.fc40 fedora 1.5 KiB python-srpm-macros noarch 3.12-5.fc40 fedora 50.1 KiB qt5-srpm-macros noarch 5.15.12-1.fc40 fedora 492.0 B qt6-srpm-macros noarch 6.6.1-3.fc40 fedora 456.0 B readline x86_64 8.2-4.fc39 fedora 493.0 KiB rpm x86_64 4.19.1-2.fc40 copr_base 3.0 MiB rpm-build-libs x86_64 4.19.1-2.fc40 copr_base 202.3 KiB rpm-libs x86_64 4.19.1-2.fc40 copr_base 749.7 KiB rpm-sequoia x86_64 1.5.0-2.fc40 fedora 2.3 MiB rust-srpm-macros noarch 25.2-2.fc40 copr_base 5.1 KiB setup noarch 2.14.5-1.fc40 fedora 720.4 KiB sqlite-libs x86_64 3.45.0-1.fc40 fedora 1.4 MiB systemd-libs x86_64 255.2-2.fc40 fedora 1.9 MiB util-linux-core x86_64 2.39.3-2.fc40 fedora 1.4 MiB xxhash-libs x86_64 0.8.2-1.fc39 fedora 88.4 KiB xz-libs x86_64 5.4.5-1.fc40 fedora 209.7 KiB zig-srpm-macros noarch 1-1.fc40 fedora 1.1 KiB zip x86_64 3.0-39.fc40 fedora 711.2 KiB zlib-ng-compat x86_64 2.1.6-1.fc40 fedora 130.0 KiB zstd x86_64 1.5.5-4.fc39 fedora 1.6 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 152 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation 178 MiB will be used (install 178 MiB, remove 0 B). [ 1/152] bzip2-0:1.0.8-16.fc39.x86_64 100% | 736.5 KiB/s | 52.3 KiB | 00m00s [ 2/152] coreutils-0:9.4-3.fc40.x86_64 100% | 5.2 MiB/s | 1.1 MiB | 00m00s [ 3/152] cpio-0:2.14-5.fc40.x86_64 100% | 1.8 MiB/s | 279.5 KiB | 00m00s [ 4/152] bash-0:5.2.21-2.fc40.x86_64 100% | 3.6 MiB/s | 1.8 MiB | 00m00s [ 5/152] diffutils-0:3.10-3.fc39.x86_6 100% | 1.4 MiB/s | 398.3 KiB | 00m00s [ 6/152] fedora-release-common-0:40-0. 100% | 74.6 KiB/s | 20.5 KiB | 00m00s [ 7/152] glibc-minimal-langpack-0:2.38 100% | 5.5 MiB/s | 95.4 KiB | 00m00s [ 8/152] grep-0:3.11-5.fc40.x86_64 100% | 13.2 MiB/s | 298.0 KiB | 00m00s [ 9/152] findutils-1:4.9.0-6.fc40.x86_ 100% | 6.5 MiB/s | 491.5 KiB | 00m00s [ 10/152] patch-0:2.7.6-22.fc39.x86_64 100% | 6.8 MiB/s | 125.4 KiB | 00m00s [ 11/152] gzip-0:1.12-6.fc39.x86_64 100% | 2.0 MiB/s | 165.7 KiB | 00m00s [ 12/152] info-0:7.1-1.fc40.x86_64 100% | 2.4 MiB/s | 184.5 KiB | 00m00s [ 13/152] redhat-rpm-config-0:280-1.fc4 100% | 4.0 MiB/s | 82.2 KiB | 00m00s [ 14/152] 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4.2 MiB | 00m00s [143/152] libpsl-0:0.21.5-1.fc40.x86_64 100% | 4.1 MiB/s | 63.3 KiB | 00m00s [144/152] libnghttp2-0:1.58.0-1.fc40.x8 100% | 4.6 MiB/s | 75.9 KiB | 00m00s [145/152] libssh-0:0.10.6-2.fc40.x86_64 100% | 12.2 MiB/s | 212.5 KiB | 00m00s [146/152] openldap-0:2.6.6-1.fc39.x86_6 100% | 14.6 MiB/s | 254.8 KiB | 00m00s [147/152] publicsuffix-list-dafsa-0:202 100% | 3.8 MiB/s | 58.0 KiB | 00m00s [148/152] libunistring-0:1.1-5.fc40.x86 100% | 11.5 MiB/s | 543.2 KiB | 00m00s [149/152] libssh-config-0:0.10.6-2.fc40 100% | 312.9 KiB/s | 9.1 KiB | 00m00s [150/152] libbrotli-0:1.1.0-2.fc40.x86_ 100% | 25.5 MiB/s | 338.9 KiB | 00m00s [151/152] libevent-0:2.1.12-9.fc39.x86_ 100% | 13.2 MiB/s | 257.7 KiB | 00m00s [152/152] cyrus-sasl-lib-0:2.1.28-17.fc 100% | 11.5 MiB/s | 789.0 KiB | 00m00s -------------------------------------------------------------------------------- [152/152] Total 100% | 18.4 MiB/s | 52.3 MiB | 00m03s Running transaction Importing PGP key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115DF9AEF857853EE8445D0A0727707EA15B79CC From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary The key was successfully imported. Importing PGP key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115DF9AEF857853EE8445D0A0727707EA15B79CC From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary The key was successfully imported. Importing PGP key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F23996F23218640CB44CBE75CF5AC418B8E74C From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary The key was successfully imported. [ 1/154] Verify package files 100% | 589.0 B/s | 152.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64 [ 2/154] Prepare transaction 100% | 2.7 KiB/s | 152.0 B | 00m00s [ 3/154] Installing libgcc-0:14.0.1-0. 100% | 133.0 MiB/s | 272.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.0.1-0.1.fc40.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.0.1-0.1.fc40.x86_64 [ 4/154] Installing crypto-policies-0: 100% | 25.3 MiB/s | 181.7 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40 >>> Stop post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40.no [ 5/154] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 6/154] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 7/154] Installing fedora-gpg-keys-0: 100% | 32.7 MiB/s | 167.6 KiB | 00m00s [ 8/154] Installing fedora-repos-0:40- 100% | 0.0 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00m00s [149/154] Installing redhat-rpm-config- 100% | 92.6 MiB/s | 189.6 KiB | 00m00s [150/154] Installing rpm-build-0:4.19.1 100% | 61.7 MiB/s | 189.4 KiB | 00m00s [151/154] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [152/154] Installing util-linux-0:2.39. 100% | 168.7 MiB/s | 3.5 MiB | 00m00s [153/154] Installing which-0:2.21-40.fc 100% | 80.4 MiB/s | 82.3 KiB | 00m00s [154/154] Installing info-0:7.1-1.fc40. 100% | 317.5 KiB/s | 374.0 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-1.fc40.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1-2.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1-2.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-33.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-1.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.x86_64 Warning: skipped PGP checks for 12 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc40.x86_64 ansible-srpm-macros-1-12.fc40.noarch audit-libs-4.0-2.fc40.x86_64 authselect-1.5.0-1.fc40.x86_64 authselect-libs-1.5.0-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-26.fc40.x86_64 binutils-gold-2.41-26.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-3.fc40.x86_64 coreutils-common-9.4-3.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-17.fc40.x86_64 debugedit-5.0-12.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.x86_64 elfutils-debuginfod-client-0.190-4.fc40.x86_64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.x86_64 elfutils-libs-0.190-4.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.29.noarch fedora-release-common-40-0.29.noarch fedora-release-identity-basic-40-0.29.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-2.fc40.x86_64 file-libs-5.45-2.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.3.0-1.fc40.x86_64 gdb-minimal-14.1-4.fc40.x86_64 gdbm-1.23-4.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-33.fc40.x86_64 glibc-common-2.38.9000-33.fc40.x86_64 glibc-gconv-extra-2.38.9000-33.fc40.x86_64 glibc-minimal-langpack-2.38.9000-33.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.x86_64 krb5-libs-1.21.2-3.fc40.x86_64 libacl-2.3.1-11.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.2-1.fc40.x86_64 libblkid-2.39.3-2.fc40.x86_64 libbrotli-1.1.0-2.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.4-3.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.5.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.3-2.fc40.x86_64 libffi-3.4.4-5.fc40.x86_64 libgcc-14.0.1-0.1.fc40.x86_64 libgomp-14.0.1-0.1.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.3-2.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.5-1.fc40.x86_64 libpwquality-1.4.5-7.fc39.x86_64 libselinux-3.6-2.fc40.x86_64 libsemanage-3.6-1.fc40.x86_64 libsepol-3.6-1.fc40.x86_64 libsmartcols-2.39.3-2.fc40.x86_64 libssh-0.10.6-2.fc40.x86_64 libssh-config-0.10.6-2.fc40.noarch libstdc++-14.0.1-0.1.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc1.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.3-2.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-4.fc40.x86_64 libxml2-2.12.4-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-9.20240113.fc40.noarch ncurses-libs-6.4-9.20240113.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.x86_64 pam-libs-1.5.3-9.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20240107-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-280-1.fc40.noarch rpm-4.19.1-2.fc40.x86_64 rpm-build-4.19.1-2.fc40.x86_64 rpm-build-libs-4.19.1-2.fc40.x86_64 rpm-libs-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.x86_64 sqlite-libs-3.45.0-1.fc40.x86_64 systemd-libs-255.2-2.fc40.x86_64 tar-1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.3-2.fc40.x86_64 util-linux-core-2.39.3-2.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.x86_64 zlib-ng-compat-2.1.6-1.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1705795200 Wrote: /builddir/build/SRPMS/snakemake-8.2.3-1.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1705809069.456248/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-x624_grx/snakemake/snakemake.spec) Config(child) 0 minutes 58 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-8.2.3-1.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1705809069.456248/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1705809069.456248/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1705809069.456248/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.11-1.fc40.x86_64 dnf5-plugins-5.1.11-1.fc40.x86_64 Finish: chroot init Start: build phase for snakemake-8.2.3-1.fc40.src.rpm Start: build setup for snakemake-8.2.3-1.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1705795200 Wrote: /builddir/build/SRPMS/snakemake-8.2.3-1.fc40.src.rpm Updating and loading repositories: fedora 100% | 744.7 KiB/s | 21.6 KiB | 00m00s Copr repository 100% | 50.2 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: help2man noarch 1.49.3-3.fc39 fedora 415.6 KiB python3-boto3 noarch 1.34.22-1.fc40 fedora 1.8 MiB python3-devel x86_64 3.12.1-2.fc40 fedora 1.2 MiB python3-flask noarch 1:3.0.0-1.fc40 copr_base 851.3 KiB python3-google-cloud-storage noarch 2.14.0-2.fc40 copr_base 1.2 MiB python3-pandas x86_64 1.5.3-7.fc39~bootstrap fedora 39.2 MiB python3-pytest noarch 7.4.3-1.fc40 copr_base 15.0 MiB python3-snakemake-executor-plugin-cluster-generic noarch 1.0.7-1.fc40 fedora 38.1 KiB python3-snakemake-storage-plugin-s3 noarch 0.2.8-1.fc40 fedora 35.7 KiB vim-filesystem noarch 2:9.1.031-1.fc40 fedora 40.0 B Installing dependencies: abseil-cpp x86_64 20230802.1-2.fc40 fedora 2.4 MiB c-ares x86_64 1.25.0-1.fc40 fedora 395.1 KiB expat x86_64 2.5.0-3.fc39 fedora 274.5 KiB flexiblas x86_64 3.4.1-1.fc40 fedora 46.7 KiB flexiblas-netlib x86_64 3.4.1-1.fc40 fedora 10.3 MiB flexiblas-openblas-openmp x86_64 3.4.1-1.fc40 fedora 39.3 KiB google-crc32c x86_64 1.1.2-7.fc39 fedora 24.0 KiB groff-base x86_64 1.23.0-4.fc40 fedora 3.8 MiB grpc-data noarch 1.48.4-31.fc40 fedora 29.6 KiB libb2 x86_64 0.98.1-9.fc39 fedora 42.1 KiB libgfortran x86_64 14.0.1-0.1.fc40 fedora 2.9 MiB libquadmath x86_64 14.0.1-0.1.fc40 fedora 329.9 KiB mpdecimal x86_64 2.5.1-7.fc39 fedora 200.8 KiB ncurses x86_64 6.4-9.20240113.fc40 fedora 620.8 KiB openblas x86_64 0.3.26-1.fc40 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-1.fc40 fedora 38.3 MiB perl-AutoLoader noarch 5.74-504.fc40 fedora 20.5 KiB perl-B x86_64 1.88-504.fc40 fedora 492.4 KiB perl-Carp noarch 1.54-500.fc39 fedora 46.5 KiB perl-Class-Struct noarch 0.68-504.fc40 fedora 25.4 KiB perl-Data-Dumper x86_64 2.188-501.fc39 fedora 111.6 KiB perl-Digest noarch 1.20-500.fc39 fedora 35.2 KiB perl-Digest-MD5 x86_64 2.59-1.fc40 fedora 59.7 KiB perl-DynaLoader x86_64 1.54-504.fc40 fedora 32.1 KiB perl-Encode x86_64 4:3.20-501.fc40 fedora 9.8 MiB perl-Errno x86_64 1.37-504.fc40 fedora 8.3 KiB perl-Exporter noarch 5.78-1.fc40 fedora 54.2 KiB perl-Fcntl x86_64 1.15-504.fc40 fedora 24.6 KiB perl-File-Basename noarch 2.86-504.fc40 fedora 14.0 KiB perl-File-Path noarch 2.18-501.fc40 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-501.fc40 fedora 162.3 KiB perl-File-stat noarch 1.13-504.fc40 fedora 12.7 KiB perl-FileHandle noarch 2.05-504.fc40 fedora 9.3 KiB perl-Getopt-Long noarch 1:2.57-1.fc40 fedora 144.1 KiB perl-Getopt-Std noarch 1.13-504.fc40 fedora 11.1 KiB perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 152.1 KiB perl-IO x86_64 1.52-504.fc40 fedora 151.0 KiB perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 98.6 KiB perl-IO-Socket-SSL noarch 2.084-1.fc40 fedora 619.8 KiB perl-IPC-Open3 noarch 1.22-504.fc40 fedora 22.4 KiB perl-MIME-Base64 x86_64 3.16-501.fc40 fedora 46.0 KiB perl-Mozilla-CA noarch 20231213-1.fc40 fedora 9.2 KiB perl-Net-SSLeay x86_64 1.94-1.fc40 fedora 1.3 MiB perl-POSIX x86_64 2.13-504.fc40 fedora 229.0 KiB perl-PathTools x86_64 3.89-500.fc39 fedora 175.5 KiB perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 163.1 KiB perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 559.8 KiB perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 84.7 KiB perl-Scalar-List-Utils x86_64 5:1.63-500.fc39 fedora 145.4 KiB perl-SelectSaver noarch 1.02-504.fc40 fedora 2.2 KiB perl-Socket x86_64 4:2.037-3.fc39 fedora 127.5 KiB perl-Storable x86_64 1:3.32-500.fc39 fedora 232.3 KiB perl-Symbol noarch 1.09-504.fc40 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-502.fc40 fedora 97.5 KiB perl-Term-Cap noarch 1.18-500.fc39 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-500.fc39 fedora 13.5 KiB perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 23.4 KiB perl-Time-Local noarch 2:1.350-3.fc39 fedora 68.9 KiB perl-URI noarch 5.21-1.fc40 fedora 225.2 KiB perl-base noarch 2.27-504.fc40 fedora 12.5 KiB perl-constant noarch 1.33-501.fc39 fedora 26.2 KiB perl-if noarch 0.61.000-504.fc40 fedora 5.8 KiB perl-interpreter x86_64 4:5.38.2-504.fc40 fedora 119.8 KiB perl-libnet noarch 3.15-501.fc39 fedora 289.0 KiB perl-libs x86_64 4:5.38.2-504.fc40 fedora 9.8 MiB perl-locale noarch 1.10-504.fc40 fedora 6.2 KiB perl-mro x86_64 1.28-504.fc40 fedora 41.6 KiB perl-overload noarch 1.37-504.fc40 fedora 71.5 KiB perl-overloading noarch 0.02-504.fc40 fedora 4.8 KiB perl-parent noarch 1:0.241-500.fc39 fedora 9.7 KiB perl-podlators noarch 1:5.01-500.fc39 fedora 308.1 KiB perl-vars noarch 1.05-504.fc40 fedora 3.9 KiB protobuf x86_64 3.19.6-6.fc39 copr_base 3.2 MiB pyproject-rpm-macros noarch 1.11.0-1.fc40 fedora 98.5 KiB python-pip-wheel noarch 23.3.1-3.fc40 fedora 1.5 MiB python-rpm-macros noarch 3.12-5.fc40 fedora 22.1 KiB python3 x86_64 3.12.1-2.fc40 fedora 31.8 KiB python3-argparse-dataclass noarch 2.0.0-3.fc40 fedora 50.0 KiB python3-blinker noarch 1.6.2-3.fc39 fedora 110.6 KiB python3-botocore noarch 1.34.23-1.fc40 copr_base 88.9 MiB python3-cachetools noarch 5.3.2-1.fc40 copr_base 142.0 KiB python3-charset-normalizer noarch 3.3.2-1.fc40 copr_base 312.7 KiB python3-click noarch 8.1.7-1.fc40 copr_base 1.1 MiB python3-configargparse noarch 1.7-1.fc40 copr_base 240.0 KiB python3-dateutil noarch 1:2.8.2-11.fc40 copr_base 877.8 KiB python3-google-api-core noarch 1:2.11.1-5.fc39 fedora 809.0 KiB python3-google-auth noarch 1:2.26.2-1.fc40 copr_base 1.2 MiB python3-google-cloud-core noarch 2.3.3-2.fc39 fedora 182.3 KiB python3-google-crc32c x86_64 1.5.0-1.fc40 fedora 62.1 KiB python3-google-resumable-media noarch 2.7.0-1.fc40 fedora 663.8 KiB python3-googleapis-common-protos noarch 1.62.0-7.fc40 copr_base 775.7 KiB python3-grpcio x86_64 1.48.4-31.fc40 fedora 7.4 MiB python3-grpcio-status noarch 1.48.4-31.fc40 fedora 14.1 KiB python3-idna noarch 3.6-1.fc40 fedora 502.3 KiB python3-iniconfig noarch 1.1.1-14.fc39 fedora 20.5 KiB python3-itsdangerous noarch 2.1.2-5.fc39 fedora 95.5 KiB python3-jinja2 noarch 3.1.3-1.fc40 fedora 3.0 MiB python3-jmespath noarch 1.0.1-4.fc39 fedora 148.5 KiB python3-libs x86_64 3.12.1-2.fc40 fedora 41.7 MiB python3-markupsafe x86_64 2.1.3-2.fc39 fedora 56.1 KiB python3-numpy x86_64 1:1.26.2-2.fc40 fedora 43.9 MiB python3-packaging noarch 23.2-2.fc40 copr_base 421.1 KiB python3-pluggy noarch 1.3.0-1.fc40 copr_base 184.0 KiB python3-protobuf x86_64 3.19.6-6.fc39 copr_base 1.9 MiB python3-pyasn1 noarch 0.5.1-1.fc40 copr_base 881.5 KiB python3-pyasn1-modules noarch 0.5.1-1.fc40 copr_base 1.7 MiB python3-pytz noarch 2023.3.post1-1.fc40 copr_base 225.7 KiB python3-requests noarch 2.31.0-1.fc40 fedora 462.4 KiB python3-reretry noarch 0.11.8-6.fc40 fedora 32.1 KiB python3-rpm-generators noarch 14-8.fc40 fedora 82.3 KiB python3-rpm-macros noarch 3.12-5.fc40 fedora 6.4 KiB python3-rsa noarch 4.9-3.fc39 copr_base 240.6 KiB python3-s3transfer noarch 0.10.0-1.fc40 copr_base 619.6 KiB python3-setuptools noarch 68.2.2-1.fc40 copr_base 7.1 MiB python3-six noarch 1.16.0-12.fc40 copr_base 117.7 KiB python3-snakemake-interface-common noarch 1.15.1-1.fc40 fedora 84.7 KiB python3-snakemake-interface-executor-plugins noarch 8.1.3-2.fc40~bootstrap fedora 135.6 KiB python3-snakemake-interface-storage-plugins noarch 3.0.0-2.fc40~bootstrap fedora 105.2 KiB python3-throttler noarch 1.2.2-7.fc40 fedora 33.5 KiB python3-urllib3 noarch 1.26.18-1.fc40 copr_base 996.2 KiB python3-werkzeug noarch 3.0.1-1.fc40 copr_base 1.8 MiB python3-wrapt x86_64 1.16.0-1.fc40 copr_base 200.0 KiB re2 x86_64 1:20220601-3.fc39 fedora 476.7 KiB tzdata noarch 2023d-1.fc40 fedora 1.6 MiB Transaction Summary: Installing: 135 packages Total size of inbound packages is 65 MiB. Need to download 65 MiB. After this operation 362 MiB will be used (install 362 MiB, remove 0 B). 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Finish: build setup for snakemake-8.2.3-1.fc40.src.rpm Start: rpmbuild snakemake-8.2.3-1.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1705795200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lEf3pg + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-8.2.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-8.2.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-8.2.3 + rm -rf /builddir/build/BUILD/snakemake-8.2.3-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-8.2.3-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') recursedown('./.github/ISSUE_TEMPLATE') recursedown('./.github/workflows') recursedown('./.github/workflows/scripts') recursedown('./apidocs') recursedown('./apidocs/_templates') 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./tests/test_io.py: no change ./tests/test_linting.py: no change ./tests/test_persistence.py: no change ./tests/test_schema.py: no change ./tests/test_script.py: no change ./tests/testapi.py: no change ./tests/tests.py: no change ./tests/test_benchmark/script.py: updating ./tests/test_conda_python_3_7_script/test_script.py: no change ./tests/test_conda_python_script/test_script.py: no change ./tests/test_deploy_sources/scripts/test.py: no change ./tests/test_filegraph/scripts/vis.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change ./tests/test_get_log_both/wrapper.py: no change ./tests/test_get_log_complex/wrapper.py: no change ./tests/test_get_log_none/wrapper.py: no change ./tests/test_get_log_stderr/wrapper.py: no change ./tests/test_get_log_stdout/wrapper.py: no change ./tests/test_github_issue1158/qsub.py: updating ./tests/test_github_issue627/job.py: updating ./tests/test_github_issue_14/local_script.py: no change ./tests/test_github_issue_14/pythonTest.py: updating ./tests/test_handover/script.py: no change ./tests/test_issue1046/my_wrapper/wrapper.py: no change ./tests/test_issue916/local_script.py: no change ./tests/test_issue916/pythonTest.py: updating ./tests/test_job_properties/qsub.py: updating ./tests/test_local_import/bar.py: no change ./tests/test_local_import/foo/__init__.py: no change ./tests/test_paramspace/scripts/simulate.py: no change ./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change ./tests/test_pipes/producer.py: no change ./tests/test_prebuilt_conda_script/test.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change ./tests/test_report_display_code/test.py: no change ./tests/test_restartable_job_cmd_exit_1/qsub.py: updating ./tests/test_restartable_job_qsub_exit_1/qsub.py: updating ./tests/test_script/scripts/test.py: no change ./tests/test_script_pre_py39/script.py: no change ./tests/test_script_py/scripts/test.py: no change ./tests/test_singularity/script.py: no change ./tests/test_singularity_module/script.py: no change ./tests/test_string_resources/qsub.py: updating ./tests/test_tibanna/cleanup.py: no change ./tests/test_tibanna/scripts/step2.py: no change 'misc/nano/README.md' -> 'README-nano.md' 'misc/vim/README.md' -> 'README-vim.md' Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.iSteOe recursedown('./tests/test_subworkflow_config/expected-results') recursedown('./tests/test_subworkflows') recursedown('./tests/test_subworkflows/expected-results') recursedown('./tests/test_symlink_temp') recursedown('./tests/test_symlink_temp/expected-results') recursedown('./tests/test_symlink_time_handling') recursedown('./tests/test_symlink_time_handling/expected-results') recursedown('./tests/test_temp') recursedown('./tests/test_temp/expected-results') recursedown('./tests/test_temp_expand') recursedown('./tests/test_temp_expand/expected-results') recursedown('./tests/test_template_engine') recursedown('./tests/test_template_engine/expected-results') recursedown('./tests/test_tes') recursedown('./tests/test_tes/expected-results') recursedown('./tests/test_threads') recursedown('./tests/test_threads/expected-results') recursedown('./tests/test_threads0') recursedown('./tests/test_threads0/expected-results') recursedown('./tests/test_tibanna') recursedown('./tests/test_tibanna/expected-results') recursedown('./tests/test_tibanna/scripts') recursedown('./tests/test_tmpdir') recursedown('./tests/test_tmpdir/expected-results') recursedown('./tests/test_touch') recursedown('./tests/test_touch/expected-results') recursedown('./tests/test_touch_pipeline_with_temp_dir') recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results') recursedown('./tests/test_touch_remote_prefix') recursedown('./tests/test_touch_remote_prefix/expected-results') recursedown('./tests/test_touch_with_directories') recursedown('./tests/test_touch_with_directories/expected-results') recursedown('./tests/test_unpack_dict') recursedown('./tests/test_unpack_dict/expected-results') recursedown('./tests/test_unpack_list') recursedown('./tests/test_unpack_list/expected-results') recursedown('./tests/test_until') recursedown('./tests/test_until/expected-results') recursedown('./tests/test_update_config') recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') recursedown('./tests/test_yaml_config') recursedown('./tests/test_yaml_config/expected-results') + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py + sed -r -i 's@python -m@"/usr/bin/python3 -m@g' tests/tests.py + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.2.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.2.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.2.3-1.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 674.9 KiB/s | 21.6 KiB | 00m00s Copr repository 100% | 42.4 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.x86_64" is already installed. Package "python3-boto3-1.34.22-1.fc40.noarch" is already installed. Package "python3-flask-1:3.0.0-1.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-2.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.x86_64" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-setuptools-68.2.2-1.fc40.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.7-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.8-1.fc40.noarch" is already installed. Package "vim-filesystem-2:9.1.031-1.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 23.3.1-3.fc40 fedora 14.2 MiB python3-wheel noarch 1:0.41.2-1.fc40 copr_base 507.1 KiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 3 MiB. Need to download 3 MiB. After this operation 15 MiB will be used (install 15 MiB, remove 0 B). [1/2] python3-wheel-1:0.41.2-1.fc40.noa 100% | 3.0 MiB/s | 148.1 KiB | 00m00s [2/2] python3-pip-0:23.3.1-3.fc40.noarc 100% | 23.9 MiB/s | 3.2 MiB | 00m00s -------------------------------------------------------------------------------- [2/2] Total 100% | 20.1 MiB/s | 3.3 MiB | 00m00s Running transaction [1/4] Verify package files 100% | 153.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 74.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-wheel-1:0.41.2 100% | 57.1 MiB/s | 526.1 KiB | 00m00s [4/4] Installing python3-pip-0:23.3.1-3 100% | 129.5 MiB/s | 14.5 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-33.fc40.x86_64 Warning: skipped PGP checks for 1 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1705795200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.xkSP2X + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.2.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.2.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.2.3/snakemake-8.2.3.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: appdirs Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: immutables Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: docutils Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.3) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp <2.9,>=2.3.1 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pyyaml Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open >=3.0 Handling snakemake-interface-executor-plugins <9.0,>=8.1.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <9.0,>=8.1.3 (installed: snakemake-interface-executor-plugins 8.1.3) Handling snakemake-interface-common <2.0,>=1.15.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.15.0 (installed: snakemake-interface-common 1.15.1) Handling snakemake-interface-storage-plugins <4.0,>=3.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.0.0 (installed: snakemake-interface-storage-plugins 3.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort >=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: conda-inject <2.0,>=1.3.1 Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slack-sdk ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pygments ; extra == 'reports' + cat /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.2.3.dist-info/ removed 'snakemake-8.2.3.dist-info/LICENSE.md' removed 'snakemake-8.2.3.dist-info/METADATA' removed 'snakemake-8.2.3.dist-info/entry_points.txt' removed 'snakemake-8.2.3.dist-info/top_level.txt' removed directory 'snakemake-8.2.3.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.2.3-1.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 635.2 KiB/s | 21.6 KiB | 00m00s Copr repository 100% | 47.0 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.x86_64" is already installed. Package "python3-boto3-1.34.22-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-flask-1:3.0.0-1.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-2.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.x86_64" is already installed. Package "python3-pip-23.3.1-3.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-requests-2.31.0-1.fc40.noarch" is already installed. Package "python3-reretry-0.11.8-6.fc40.noarch" is already installed. Package "python3-setuptools-68.2.2-1.fc40.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.7-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.8-1.fc40.noarch" is already installed. Package "python3-throttler-1.2.2-7.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-1.fc40.noarch" is already installed. Package "python3-wrapt-1.16.0-1.fc40.x86_64" is already installed. Package "vim-filesystem-2:9.1.031-1.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-GitPython noarch 3.1.40-1.fc40 copr_base 1.7 MiB python3-appdirs noarch 1.4.4-11.fc39 copr_base 68.9 KiB python3-conda-inject noarch 1.3.1-1.fc40 fedora 23.0 KiB python3-connection_pool noarch 0.0.3-9.fc39 copr_base 21.1 KiB python3-datrie x86_64 0.8.2-22.fc40 copr_base 448.8 KiB python3-docutils noarch 0.20.1-1.fc40 copr_base 4.8 MiB python3-humanfriendly noarch 10.0-8.fc39 copr_base 549.1 KiB python3-immutables x86_64 0.20-1.fc40 copr_base 188.4 KiB python3-jsonschema noarch 4.19.1-1.fc40 copr_base 851.4 KiB python3-nbformat noarch 5.9.2-1.fc40 copr_base 549.1 KiB python3-psutil x86_64 5.9.5-2.fc40 copr_base 1.4 MiB python3-pulp noarch 2.7.0-3.fc39 fedora 887.2 KiB python3-pygments noarch 2.17.2-1.fc40 copr_base 10.3 MiB python3-pyyaml x86_64 6.0.1-11.fc39 copr_base 783.2 KiB python3-slackclient noarch 3.26.2-1.fc40 fedora 2.8 MiB python3-smart_open noarch 6.4.0-2.fc40 copr_base 459.0 KiB python3-stopit noarch 1.1.2-8.fc39 copr_base 65.1 KiB python3-tabulate noarch 0.9.0-4.fc39 fedora 340.4 KiB python3-toposort noarch 1.10-8.fc40 fedora 28.5 KiB python3-yte noarch 1.5.4-1.fc40 fedora 60.5 KiB Installing dependencies: git-core x86_64 2.43.0-1.fc40 fedora 20.8 MiB less x86_64 643-1.fc40 fedora 388.5 KiB libcbor x86_64 0.10.2-3.fc40 fedora 77.9 KiB libedit x86_64 3.1-48.20230828cvs.fc40 fedora 251.8 KiB libfido2 x86_64 1.14.0-1.fc40 fedora 237.7 KiB libyaml x86_64 0.2.5-12.fc39 fedora 130.9 KiB openssh x86_64 9.6p1-1.fc40 fedora 1.8 MiB openssh-clients x86_64 9.6p1-1.fc40 fedora 2.6 MiB python3-attrs noarch 23.2.0-2.fc40 fedora 379.5 KiB python3-boto noarch 2.49.0-19.fc40 fedora 9.8 MiB python3-dpath noarch 2.1.4-3.fc39 copr_base 92.3 KiB python3-fastjsonschema noarch 2.18.0-1.fc40 fedora 188.3 KiB python3-gitdb noarch 4.0.10-3.fc39 fedora 503.1 KiB python3-jsonschema-specifications noarch 2023.11.2-1.fc40 fedora 45.8 KiB python3-jupyter-core noarch 5.1.0-5.fc39 fedora 505.6 KiB python3-plac noarch 1.4.2-3.fc40 fedora 226.6 KiB python3-platformdirs noarch 3.11.0-1.fc40 copr_base 162.4 KiB python3-referencing noarch 0.31.1-1.fc40 fedora 313.3 KiB python3-rpds-py x86_64 0.16.2-1.fc40 fedora 675.8 KiB python3-smmap noarch 5.0.0-6.fc39 fedora 198.2 KiB python3-traitlets noarch 5.11.2-1.fc40 copr_base 929.3 KiB python3-zombie-imp noarch 0.0.2-3.fc40 fedora 58.0 KiB Transaction Summary: Installing: 42 packages Total size of inbound packages is 15 MiB. Need to download 15 MiB. After this operation 67 MiB will be used (install 67 MiB, remove 0 B). [ 1/42] python3-conda-inject-0:1.3.1-1. 100% | 51.4 KiB/s | 18.0 KiB | 00m00s [ 2/42] python3-appdirs-0:1.4.4-11.fc39 100% | 710.4 KiB/s | 23.4 KiB | 00m00s [ 3/42] python3-connection_pool-0:0.0.3 100% | 823.1 KiB/s | 17.3 KiB | 00m00s [ 4/42] python3-yte-0:1.5.4-1.fc40.noar 100% | 86.3 KiB/s | 36.0 KiB | 00m00s [ 5/42] python3-docutils-0:0.20.1-1.fc4 100% | 20.2 MiB/s | 995.2 KiB | 00m00s [ 6/42] python3-datrie-0:0.8.2-22.fc40. 100% | 2.6 MiB/s | 157.8 KiB | 00m00s [ 7/42] python3-humanfriendly-0:10.0-8. 100% | 6.5 MiB/s | 132.1 KiB | 00m00s [ 8/42] python3-GitPython-0:3.1.40-1.fc 100% | 12.6 MiB/s | 361.8 KiB | 00m00s [ 9/42] python3-immutables-0:0.20-1.fc4 100% | 3.1 MiB/s | 59.9 KiB | 00m00s [10/42] python3-jsonschema-0:4.19.1-1.f 100% | 5.9 MiB/s | 186.8 KiB | 00m00s [11/42] python3-nbformat-0:5.9.2-1.fc40 100% | 4.1 MiB/s | 120.9 KiB | 00m00s [12/42] python3-psutil-0:5.9.5-2.fc40.x 100% | 10.6 MiB/s | 260.4 KiB | 00m00s [13/42] python3-pygments-0:2.17.2-1.fc4 100% | 43.6 MiB/s | 2.3 MiB | 00m00s [14/42] python3-pyyaml-0:6.0.1-11.fc39. 100% | 5.2 MiB/s | 218.6 KiB | 00m00s [15/42] python3-smart_open-0:6.4.0-2.fc 100% | 4.4 MiB/s | 107.5 KiB | 00m00s [16/42] python3-stopit-0:1.1.2-8.fc39.n 100% | 1.3 MiB/s | 25.7 KiB | 00m00s [17/42] python3-pulp-0:2.7.0-3.fc39.noa 100% | 286.1 KiB/s | 209.1 KiB | 00m01s [18/42] python3-toposort-0:1.10-8.fc40. 100% | 151.7 KiB/s | 20.0 KiB | 00m00s [19/42] python3-plac-0:1.4.2-3.fc40.noa 100% | 536.2 KiB/s | 65.4 KiB | 00m00s [20/42] python3-tabulate-0:0.9.0-4.fc39 100% | 161.6 KiB/s | 68.7 KiB | 00m00s [21/42] python3-gitdb-0:4.0.10-3.fc39.n 100% | 474.9 KiB/s | 142.0 KiB | 00m00s [22/42] python3-jsonschema-specificatio 100% | 223.3 KiB/s | 27.0 KiB | 00m00s [23/42] python3-referencing-0:0.31.1-1. 100% | 601.0 KiB/s | 81.7 KiB | 00m00s [24/42] python3-slackclient-0:3.26.2-1. 100% | 441.3 KiB/s | 553.8 KiB | 00m01s [25/42] git-core-0:2.43.0-1.fc40.x86_64 100% | 4.5 MiB/s | 4.5 MiB | 00m01s [26/42] python3-fastjsonschema-0:2.18.0 100% | 487.6 KiB/s | 63.4 KiB | 00m00s [27/42] python3-rpds-py-0:0.16.2-1.fc40 100% | 714.7 KiB/s | 290.9 KiB | 00m00s [28/42] libyaml-0:0.2.5-12.fc39.x86_64 100% | 801.8 KiB/s | 59.3 KiB | 00m00s [29/42] less-0:643-1.fc40.x86_64 100% | 2.3 MiB/s | 175.7 KiB | 00m00s [30/42] python3-jupyter-core-0:5.1.0-5. 100% | 652.5 KiB/s | 140.9 KiB | 00m00s [31/42] openssh-clients-0:9.6p1-1.fc40. 100% | 9.0 MiB/s | 746.8 KiB | 00m00s [32/42] python3-smmap-0:5.0.0-6.fc39.no 100% | 828.8 KiB/s | 62.2 KiB | 00m00s [33/42] libedit-0:3.1-48.20230828cvs.fc 100% | 1.4 MiB/s | 107.2 KiB | 00m00s [34/42] libfido2-0:1.14.0-1.fc40.x86_64 100% | 1.3 MiB/s | 97.5 KiB | 00m00s [35/42] openssh-0:9.6p1-1.fc40.x86_64 100% | 5.3 MiB/s | 422.8 KiB | 00m00s [36/42] libcbor-0:0.10.2-3.fc40.x86_64 100% | 445.6 KiB/s | 33.0 KiB | 00m00s [37/42] python3-zombie-imp-0:0.0.2-3.fc 100% | 389.9 KiB/s | 28.9 KiB | 00m00s [38/42] python3-traitlets-0:5.11.2-1.fc 100% | 8.9 MiB/s | 191.7 KiB | 00m00s [39/42] python3-dpath-0:2.1.4-3.fc39.no 100% | 1.8 MiB/s | 38.0 KiB | 00m00s [40/42] python3-platformdirs-0:3.11.0-1 100% | 1.5 MiB/s | 40.1 KiB | 00m00s [41/42] python3-attrs-0:23.2.0-2.fc40.n 100% | 1.6 MiB/s | 123.8 KiB | 00m00s [42/42] python3-boto-0:2.49.0-19.fc40.n 100% | 2.7 MiB/s | 1.8 MiB | 00m01s -------------------------------------------------------------------------------- [42/42] Total 100% | 5.5 MiB/s | 14.9 MiB | 00m03s Running transaction [ 1/44] Verify package files 100% | 617.0 B/s | 42.0 B | 00m00s [ 2/44] Prepare transaction 100% | 608.0 B/s | 42.0 B | 00m00s [ 3/44] Installing python3-attrs-0:23.2 100% | 96.2 MiB/s | 394.0 KiB | 00m00s [ 4/44] Installing python3-traitlets-0: 100% | 154.0 MiB/s | 946.4 KiB | 00m00s [ 5/44] Installing python3-rpds-py-0:0. 100% | 166.0 MiB/s | 679.7 KiB | 00m00s [ 6/44] Installing python3-referencing- 100% | 105.1 MiB/s | 322.9 KiB | 00m00s [ 7/44] Installing python3-jsonschema-s 100% | 18.0 MiB/s | 55.1 KiB | 00m00s [ 8/44] Installing python3-jsonschema-0 100% | 141.9 MiB/s | 871.7 KiB | 00m00s [ 9/44] Installing python3-platformdirs 100% | 82.6 MiB/s | 169.2 KiB | 00m00s [10/44] Installing python3-jupyter-core 100% | 86.1 MiB/s | 529.1 KiB | 00m00s [11/44] Installing python3-dpath-0:2.1. 100% | 47.8 MiB/s | 97.9 KiB | 00m00s [12/44] Installing python3-zombie-imp-0 100% | 15.1 MiB/s | 62.0 KiB | 00m00s [13/44] Installing python3-boto-0:2.49. 100% | 152.6 MiB/s | 10.1 MiB | 00m00s [14/44] Installing libcbor-0:0.10.2-3.f 100% | 77.4 MiB/s | 79.3 KiB | 00m00s [15/44] Installing libfido2-0:1.14.0-1. 100% | 116.8 MiB/s | 239.2 KiB | 00m00s [16/44] Installing openssh-0:9.6p1-1.fc 100% | 302.1 MiB/s | 1.8 MiB | 00m00s [17/44] Installing libedit-0:3.1-48.202 100% | 123.8 MiB/s | 253.5 KiB | 00m00s [18/44] Installing openssh-clients-0:9. 100% | 145.1 MiB/s | 2.6 MiB | 00m00s >>> Running post-install scriptlet: openssh-clients-0:9.6p1-1.fc40.x86_64 >>> Stop post-install scriptlet: openssh-clients-0:9.6p1-1.fc40.x86_64 [19/44] Installing python3-smmap-0:5.0. 100% | 33.5 MiB/s | 205.9 KiB | 00m00s [20/44] Installing python3-gitdb-0:4.0. 100% | 63.4 MiB/s | 519.6 KiB | 00m00s [21/44] Installing less-0:643-1.fc40.x8 100% | 76.5 MiB/s | 391.8 KiB | 00m00s [22/44] Installing git-core-0:2.43.0-1. 100% | 270.7 MiB/s | 20.8 MiB | 00m00s [23/44] Installing libyaml-0:0.2.5-12.f 100% | 64.6 MiB/s | 132.3 KiB | 00m00s [24/44] Installing python3-pyyaml-0:6.0 100% | 111.2 MiB/s | 797.0 KiB | 00m00s [25/44] Installing python3-fastjsonsche 100% | 47.9 MiB/s | 196.3 KiB | 00m00s [26/44] Installing python3-plac-0:1.4.2 100% | 74.9 MiB/s | 230.1 KiB | 00m00s [27/44] Installing python3-yte-0:1.5.4- 100% | 21.4 MiB/s | 65.7 KiB | 00m00s [28/44] Installing python3-nbformat-0:5 100% | 70.5 MiB/s | 577.3 KiB | 00m00s [29/44] Installing python3-conda-inject 100% | 12.5 MiB/s | 25.6 KiB | 00m00s [30/44] Installing python3-GitPython-0: 100% | 157.7 MiB/s | 1.7 MiB | 00m00s [31/44] Installing python3-smart_open-0 100% | 92.1 MiB/s | 471.3 KiB | 00m00s [32/44] Installing python3-toposort-0:1 100% | 15.0 MiB/s | 30.8 KiB | 00m00s [33/44] Installing python3-tabulate-0:0 100% | 111.9 MiB/s | 343.8 KiB | 00m00s [34/44] Installing python3-stopit-0:1.1 100% | 22.6 MiB/s | 69.4 KiB | 00m00s [35/44] Installing python3-slackclient- 100% | 86.8 MiB/s | 2.9 MiB | 00m00s [36/44] Installing python3-pygments-0:2 100% | 157.3 MiB/s | 10.5 MiB | 00m00s [37/44] Installing python3-psutil-0:5.9 100% | 205.1 MiB/s | 1.4 MiB | 00m00s [38/44] Installing python3-immutables-0 100% | 63.3 MiB/s | 194.3 KiB | 00m00s [39/44] Installing python3-humanfriendl 100% | 78.2 MiB/s | 560.6 KiB | 00m00s [40/44] Installing python3-docutils-0:0 100% | 143.6 MiB/s | 4.9 MiB | 00m00s [41/44] Installing python3-datrie-0:0.8 100% | 110.1 MiB/s | 450.8 KiB | 00m00s [42/44] Installing python3-connection_p 100% | 11.6 MiB/s | 23.7 KiB | 00m00s [43/44] Installing python3-appdirs-0:1. 100% | 34.7 MiB/s | 71.1 KiB | 00m00s [44/44] Installing python3-pulp-0:2.7.0 100% | 15.8 MiB/s | 904.2 KiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-33.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-33.fc40.x86_64 Warning: skipped PGP checks for 17 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1705795200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.qzxMtr + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.2.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.2.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.2.3/snakemake-8.2.3.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.3) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.9,>=2.3.1 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling snakemake-interface-executor-plugins <9.0,>=8.1.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <9.0,>=8.1.3 (installed: snakemake-interface-executor-plugins 8.1.3) Handling snakemake-interface-common <2.0,>=1.15.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.15.0 (installed: snakemake-interface-common 1.15.1) Handling snakemake-interface-storage-plugins <4.0,>=3.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.0.0 (installed: snakemake-interface-storage-plugins 3.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.1) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.26.2) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.2.3.dist-info/ removed 'snakemake-8.2.3.dist-info/LICENSE.md' removed 'snakemake-8.2.3.dist-info/METADATA' removed 'snakemake-8.2.3.dist-info/top_level.txt' removed 'snakemake-8.2.3.dist-info/entry_points.txt' removed directory 'snakemake-8.2.3.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-8.2.3-1.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 399.9 KiB/s | 21.6 KiB | 00m00s Copr repository 100% | 58.4 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.x86_64" is already installed. Package "python3-appdirs-1.4.4-11.fc39.noarch" is already installed. Package "python3-boto3-1.34.22-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-connection_pool-0.0.3-9.fc39.noarch" is already installed. Package "python3-datrie-0.8.2-22.fc40.x86_64" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-flask-1:3.0.0-1.fc40.noarch" is already installed. Package "python3-GitPython-3.1.40-1.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-2.fc40.noarch" is already installed. Package "python3-humanfriendly-10.0-8.fc39.noarch" is already installed. Package "python3-immutables-0.20-1.fc40.x86_64" is already installed. Package "python3-jsonschema-4.19.1-1.fc40.noarch" is already installed. Package "python3-nbformat-5.9.2-1.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.x86_64" is already installed. Package "python3-pip-23.3.1-3.fc40.noarch" is already installed. Package "python3-psutil-5.9.5-2.fc40.x86_64" is already installed. Package "python3-pygments-2.17.2-1.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-pyyaml-6.0.1-11.fc39.x86_64" is already installed. Package "python3-requests-2.31.0-1.fc40.noarch" is already installed. Package "python3-reretry-0.11.8-6.fc40.noarch" is already installed. Package "python3-setuptools-68.2.2-1.fc40.noarch" is already installed. Package "python3-slackclient-3.26.2-1.fc40.noarch" is already installed. Package "python3-smart_open-6.4.0-2.fc40.noarch" is already installed. Package "python3-snakemake-executor-plugin-cluster-generic-1.0.7-1.fc40.noarch" is already installed. Package "python3-snakemake-storage-plugin-s3-0.2.8-1.fc40.noarch" is already installed. Package "python3-stopit-1.1.2-8.fc39.noarch" is already installed. Package "python3-tabulate-0.9.0-4.fc39.noarch" is already installed. Package "python3-throttler-1.2.2-7.fc40.noarch" is already installed. Package "python3-toposort-1.10-8.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-1.fc40.noarch" is already installed. Package "python3-wrapt-1.16.0-1.fc40.x86_64" is already installed. Package "vim-filesystem-2:9.1.031-1.fc40.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1705795200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.jocMLQ + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.2.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-8.2.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.2.3/snakemake-8.2.3.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling immutables from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: immutables (installed: immutables 0.20) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.3) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.2) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp <2.9,>=2.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp <2.9,>=2.3.1 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.31.0) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling snakemake-interface-executor-plugins <9.0,>=8.1.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-executor-plugins <9.0,>=8.1.3 (installed: snakemake-interface-executor-plugins 8.1.3) Handling snakemake-interface-common <2.0,>=1.15.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-common <2.0,>=1.15.0 (installed: snakemake-interface-common 1.15.1) Handling snakemake-interface-storage-plugins <4.0,>=3.0.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: snakemake-interface-storage-plugins <4.0,>=3.0.0 (installed: snakemake-interface-storage-plugins 3.0.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling conda-inject <2.0,>=1.3.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: conda-inject <2.0,>=1.3.1 (installed: conda-inject 1.3.1) Handling slack-sdk ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slack-sdk ; extra == 'messaging' (installed: slack-sdk 3.26.2) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-8.2.3.dist-info/ removed 'snakemake-8.2.3.dist-info/LICENSE.md' removed 'snakemake-8.2.3.dist-info/METADATA' removed 'snakemake-8.2.3.dist-info/entry_points.txt' removed 'snakemake-8.2.3.dist-info/top_level.txt' removed directory 'snakemake-8.2.3.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.X9o4sp + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.2.3 + mkdir -p /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-8.2.3/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-8.2.3 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info writing /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file '/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-modern-metadata-0pljm954/snakemake-8.2.3.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/storage.py -> build/lib/snakemake copying snakemake/spawn_jobs.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/settings.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/cli.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/api.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/script copying snakemake/script/__init__.py -> build/lib/snakemake/script creating build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote creating build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting creating build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying snakemake/executors/touch.py -> build/lib/snakemake/executors copying snakemake/executors/local.py -> build/lib/snakemake/executors copying snakemake/executors/dryrun.py -> build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors creating build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment creating build/lib/snakemake/common copying snakemake/common/workdir_handler.py -> build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/git.py -> build/lib/snakemake/common copying snakemake/common/configfile.py -> build/lib/snakemake/common copying snakemake/common/argparse.py -> build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/storage.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/data copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data copying snakemake/report/data/results.py -> build/lib/snakemake/report/data copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/common.py -> build/lib/snakemake/report/data copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components creating build/lib/snakemake/common/tests copying snakemake/common/tests/__init__.py -> build/lib/snakemake/common/tests creating build/lib/snakemake/common/tests/testcases copying snakemake/common/tests/testcases/__init__.py -> build/lib/snakemake/common/tests/testcases creating build/lib/snakemake/common/tests/testcases/simple copying snakemake/common/tests/testcases/simple/__init__.py -> build/lib/snakemake/common/tests/testcases/simple creating build/lib/snakemake/common/tests/testcases/groups copying snakemake/common/tests/testcases/groups/__init__.py -> build/lib/snakemake/common/tests/testcases/groups copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components copying snakemake/common/tests/testcases/simple/Snakefile -> build/lib/snakemake/common/tests/testcases/simple copying snakemake/common/tests/testcases/groups/Snakefile -> build/lib/snakemake/common/tests/testcases/groups UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '8.2.3' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake creating build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/storage.py -> build/bdist.linux-x86_64/wheel/snakemake/caching creating build/bdist.linux-x86_64/wheel/snakemake/common creating build/bdist.linux-x86_64/wheel/snakemake/common/tests creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/Snakefile -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups copying build/lib/snakemake/common/tests/testcases/groups/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/groups creating build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/Snakefile -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/simple/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases/simple copying build/lib/snakemake/common/tests/testcases/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests/testcases copying build/lib/snakemake/common/tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common/tests copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/argparse.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/configfile.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/git.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/workdir_handler.py -> build/bdist.linux-x86_64/wheel/snakemake/common creating build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment creating build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/dryrun.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/local.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/touch.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting creating build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/snakemake/remote creating build/bdist.linux-x86_64/wheel/snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data creating build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-x86_64/wheel/snakemake/report/template creating build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/script copying build/lib/snakemake/script/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/script creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/api.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cli.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/settings.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/spawn_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/storage.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-8.2.3-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/snakemake-8.2.3.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir/pip-wheel-rks7njuh/.tmp-a0q92gko/snakemake-8.2.3-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/api.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cli.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/io.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/settings.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/spawn_jobs.py' adding 'snakemake/storage.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/storage.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/argparse.py' adding 'snakemake/common/configfile.py' adding 'snakemake/common/git.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/common/workdir_handler.py' adding 'snakemake/common/tests/__init__.py' adding 'snakemake/common/tests/testcases/__init__.py' adding 'snakemake/common/tests/testcases/groups/Snakefile' adding 'snakemake/common/tests/testcases/groups/__init__.py' adding 'snakemake/common/tests/testcases/simple/Snakefile' adding 'snakemake/common/tests/testcases/simple/__init__.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/dryrun.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/local.py' adding 'snakemake/executors/touch.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/data/__init__.py' adding 'snakemake/report/data/categories.py' adding 'snakemake/report/data/common.py' adding 'snakemake/report/data/packages.py' adding 'snakemake/report/data/results.py' adding 'snakemake/report/data/rulegraph.py' adding 'snakemake/report/data/rules.py' adding 'snakemake/report/data/runtimes.py' adding 'snakemake/report/data/timeline.py' adding 'snakemake/report/template/__init__.py' adding 'snakemake/report/template/index.html.jinja2' adding 'snakemake/report/template/logo.svg' adding 'snakemake/report/template/style.css' adding 'snakemake/report/template/components/__init__.py' adding 'snakemake/report/template/components/abstract_menu.js' adding 'snakemake/report/template/components/abstract_results.js' adding 'snakemake/report/template/components/app.js' adding 'snakemake/report/template/components/breadcrumbs.js' adding 'snakemake/report/template/components/button.js' adding 'snakemake/report/template/components/category.js' adding 'snakemake/report/template/components/common.js' adding 'snakemake/report/template/components/content.js' adding 'snakemake/report/template/components/icon.js' adding 'snakemake/report/template/components/list_heading.js' adding 'snakemake/report/template/components/list_item.js' adding 'snakemake/report/template/components/menu.js' adding 'snakemake/report/template/components/navbar.js' adding 'snakemake/report/template/components/report_info.js' adding 'snakemake/report/template/components/result_info.js' adding 'snakemake/report/template/components/result_view_button.js' adding 'snakemake/report/template/components/rule_graph.js' adding 'snakemake/report/template/components/rule_info.js' adding 'snakemake/report/template/components/search_results.js' adding 'snakemake/report/template/components/stats.js' adding 'snakemake/report/template/components/subcategory.js' adding 'snakemake/script/__init__.py' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-8.2.3.dist-info/LICENSE.md' adding 'snakemake-8.2.3.dist-info/METADATA' adding 'snakemake-8.2.3.dist-info/WHEEL' adding 'snakemake-8.2.3.dist-info/entry_points.txt' adding 'snakemake-8.2.3.dist-info/top_level.txt' adding 'snakemake-8.2.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-8.2.3-py3-none-any.whl size=285957 sha256=50e8b528c63215836da67bd4819038b6dd0b8f86a8f3331adeeade430d84f494 Stored in directory: /builddir/.cache/pip/wheels/db/6c/c5/9d53e51dc9ff099a317426456eca0fdf4c16dbf928da3f4600 Successfully built snakemake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.DSRppX + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.2.3 ++ ls /builddir/build/BUILD/snakemake-8.2.3/pyproject-wheeldir/snakemake-8.2.3-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=snakemake==8.2.3 + '[' -z snakemake==8.2.3 ']' + TMPDIR=/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-8.2.3/pyproject-wheeldir snakemake==8.2.3 Using pip 23.3.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/snakemake-8.2.3/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-8.2.3-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin/snakemake to 755 Successfully installed snakemake-8.2.3 + '[' -d /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin/snakemake: updating + rm -rfv /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/snakemake-8.2.3.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.2.3.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 --record /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.2.3.dist-info/RECORD --output /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.2.3.dist-info/RECORD removed '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.2.3.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.2.3.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-8.2.3.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/man/man1 + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages + help2man --no-info '--name=Metapackage for snakemake: messaging extras' snakemake + install -t /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/vim/vimfiles/README.md + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 8.2.3-1.fc40 --unique-debug-suffix -8.2.3-1.fc40.x86_64 --unique-debug-src-base snakemake-8.2.3-1.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-8.2.3 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.LG5Ygk + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-8.2.3 + '[' '!' -f /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/snakemake-8.2.3-1.fc40.x86_64-pyproject-modules -e '*.tests*' -e snakemake.executors.flux Check import: snakemake Check import: snakemake.api Check import: snakemake.benchmark Check import: snakemake.caching Check import: snakemake.caching.hash Check import: snakemake.caching.local Check import: snakemake.caching.storage Check import: snakemake.checkpoints Check import: snakemake.cli Check import: snakemake.common Check import: snakemake.common.argparse Check import: snakemake.common.configfile Check import: snakemake.common.git Check import: snakemake.common.tbdstring Check import: snakemake.common.workdir_handler Check import: snakemake.cwl Check import: snakemake.dag Check import: snakemake.decorators Check import: snakemake.deployment Check import: snakemake.deployment.conda Check import: snakemake.deployment.containerize Check import: snakemake.deployment.env_modules Check import: snakemake.deployment.singularity Check import: snakemake.exceptions Check import: snakemake.executors Check import: snakemake.executors.dryrun Check import: snakemake.executors.google_lifesciences_helper Check import: snakemake.executors.local Check import: snakemake.executors.touch Check import: snakemake.gui Check import: snakemake.io Check import: snakemake.jobs Check import: snakemake.linting Check import: snakemake.linting.links Check import: snakemake.linting.rules Check import: snakemake.linting.snakefiles Check import: snakemake.logging Check import: snakemake.modules Check import: snakemake.notebook Check import: snakemake.output_index Check import: snakemake.parser Check import: snakemake.path_modifier Check import: snakemake.persistence Check import: snakemake.profiles Check import: snakemake.remote Check import: snakemake.remote.AzBlob Check import: snakemake.remote.EGA Check import: snakemake.remote.FTP Check import: snakemake.remote.GS Check import: snakemake.remote.HTTP Check import: snakemake.remote.NCBI Check import: snakemake.remote.S3 Check import: snakemake.remote.S3Mocked Check import: snakemake.remote.SFTP Check import: snakemake.remote.XRootD Check import: snakemake.remote.dropbox Check import: snakemake.remote.gfal Check import: snakemake.remote.gridftp Check import: snakemake.remote.iRODS Check import: snakemake.remote.webdav Check import: snakemake.remote.zenodo Check import: snakemake.report Check import: snakemake.report.data Check import: snakemake.report.data.categories Check import: snakemake.report.data.common Check import: snakemake.report.data.packages Check import: snakemake.report.data.results Check import: snakemake.report.data.rulegraph Check import: snakemake.report.data.rules Check import: snakemake.report.data.runtimes Check import: snakemake.report.data.timeline Check import: snakemake.report.rulegraph_spec Check import: snakemake.report.template Check import: snakemake.report.template.components Check import: snakemake.resources Check import: snakemake.ruleinfo Check import: snakemake.rules Check import: snakemake.scheduler Check import: snakemake.script Check import: snakemake.settings Check import: snakemake.shell Check import: snakemake.sourcecache Check import: snakemake.spawn_jobs Check import: snakemake.storage Check import: snakemake.target_jobs Check import: snakemake.template_rendering Check import: snakemake.template_rendering.jinja2 Check import: snakemake.template_rendering.yte Check import: snakemake.unit_tests Check import: snakemake.unit_tests.templates Check import: snakemake.utils Check import: snakemake.workflow Check import: snakemake.wrapper + ignore=' --ignore-glob=tests/test_google_lifesciences/*' + k='not test_deploy_sources' + ignore=' --ignore-glob=tests/test_google_lifesciences/* --ignore-glob=tests/test_conda_python_3_7_script/*' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-8.2.3/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest -v -k 'not test_deploy_sources' '--ignore-glob=tests/test_google_lifesciences/*' '--ignore-glob=tests/test_conda_python_3_7_script/*' ============================= test session starts ============================== platform linux -- Python 3.12.1, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-8.2.3 collecting ... collected 52 items / 1 deselected / 51 selected tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow PASSED [ 1%] tests/test_executor_test_suite.py::TestWorkflows::test_group_workflow PASSED [ 3%] tests/test_expand.py::test_simple_expand PASSED [ 5%] tests/test_expand.py::test_allow_missing PASSED [ 7%] tests/test_io.py::test_wildcard_regex PASSED [ 9%] tests/test_io.py::test_expand PASSED [ 11%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 13%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 15%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 17%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 19%] tests/test_linting.py::test_lint[path_add-positive] PASSED [ 21%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 23%] tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 25%] tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 27%] tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 29%] tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 31%] tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 33%] tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 35%] tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 37%] tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 39%] tests/test_linting.py::test_lint[long_run-positive] PASSED [ 41%] tests/test_linting.py::test_lint[long_run-negative] PASSED [ 43%] tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 45%] tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 47%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 49%] tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 50%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 52%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 54%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 56%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 58%] tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 60%] tests/test_schema.py::test_config PASSED [ 62%] tests/test_schema.py::test_config_ref PASSED [ 64%] tests/test_schema.py::test_dataframe PASSED [ 66%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 68%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 70%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 72%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 74%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 76%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 78%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 80%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 82%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 84%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 86%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 88%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 90%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 92%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%] tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%] tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%] =============================== warnings summary =============================== tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_executor_test_suite.py::TestWorkflows::test_simple_workflow /usr/lib64/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-8.2.3/snakemake/utils.py:52: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver tests/test_schema.py::test_dataframe /usr/lib64/python3.12/site-packages/pandas/core/algorithms.py:522: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) common = np.find_common_type([values.dtype, comps_array.dtype], []) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 51 passed, 1 deselected, 16 warnings in 84.27s (0:01:24) =========== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-8.2.3-1.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.kjxfoH + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.2.3 + DOCDIR=/builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/doc/snakemake + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.2.3/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.2.3/README.md /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.2.3/README-nano.md /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/doc/snakemake + cp -pr /builddir/build/BUILD/snakemake-8.2.3/README-vim.md /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64/usr/share/doc/snakemake + RPM_EC=0 ++ jobs -p + exit 0 Provides: python3.12dist(snakemake) = 8.2.3 python3dist(snakemake) = 8.2.3 snakemake = 8.2.3-1.fc40 vim-snakemake = 8.2.3-1.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(conda-inject) < 2~~ with python3.12dist(conda-inject) >= 1.3.1) (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(pulp) < 2.9~~ with python3.12dist(pulp) >= 2.3.1) (python3.12dist(snakemake-interface-common) < 2~~ with python3.12dist(snakemake-interface-common) >= 1.15) (python3.12dist(snakemake-interface-executor-plugins) < 9~~ with python3.12dist(snakemake-interface-executor-plugins) >= 8.1.3) (python3.12dist(snakemake-interface-storage-plugins) < 4~~ with python3.12dist(snakemake-interface-storage-plugins) >= 3) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(immutables) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pyyaml) python3.12dist(requests) python3.12dist(reretry) python3.12dist(smart-open) >= 3 python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(toposort) >= 1.10 python3.12dist(wrapt) Obsoletes: snakemake+azure < 8.1.0-1 snakemake+google-cloud < 8.1.0-1 snakemake-doc < 8.2.1-2 Processing files: snakemake+reports-8.2.3-1.fc40.noarch Provides: python3.12dist(snakemake[reports]) = 8.2.3 python3dist(snakemake[reports]) = 8.2.3 snakemake+reports = 8.2.3-1.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(pygments) Processing files: snakemake+messaging-8.2.3-1.fc40.noarch Provides: python3.12dist(snakemake[messaging]) = 8.2.3 python3dist(snakemake[messaging]) = 8.2.3 snakemake+messaging = 8.2.3-1.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(slack-sdk) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 Wrote: /builddir/build/SRPMS/snakemake-8.2.3-1.fc40.src.rpm Wrote: /builddir/build/RPMS/snakemake+reports-8.2.3-1.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-8.2.3-1.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-8.2.3-1.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ZBHnv8 + umask 022 + cd /builddir/build/BUILD + cd snakemake-8.2.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-8.2.3-1.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.GwmJxH + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/snakemake-8.2.3-SPECPARTS + rm -rf snakemake-8.2.3 snakemake-8.2.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-8.2.3-1.fc40.src.rpm Finish: build phase for snakemake-8.2.3-1.fc40.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1705809069.456248/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-8.2.3-1.fc40.src.rpm) Config(child) 2 minutes 0 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake", "epoch": null, "version": "8.2.3", "release": "1.fc40", "arch": "noarch" }, { "name": "snakemake+messaging", "epoch": null, "version": "8.2.3", "release": "1.fc40", "arch": "noarch" }, { "name": "snakemake+reports", "epoch": null, "version": "8.2.3", "release": "1.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "8.2.3", "release": "1.fc40", "arch": "src" } ] } RPMResults finished