Mock Version: 4.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1690367528.130056/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1bb1c9bd50c84692b2d5f9ee1c26f391', '-D', '/var/lib/mock/fedora-38-x86_64-1690367528.130056/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1690329600 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.4.2-1.fc38.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1690367528.130056/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f345c6a6b8f540d4adc6aa5196b4d5cd', '-D', '/var/lib/mock/fedora-38-x86_64-1690367528.130056/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1690329600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.d3joEM + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf netpyne-1.0.4.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-netpyne-1.0.4.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd netpyne-1.0.4.2 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/767.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i 's/matplotlib<=3.5.1/matplotlib/' setup.py + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.poofAv + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.4.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.4.2/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.2) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.4.2-1.fc38.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1690367528.130056/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'e50bf255b22f455cb9c990f8d29e3a1a', '-D', '/var/lib/mock/fedora-38-x86_64-1690367528.130056/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1690329600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rE1GFj + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf netpyne-1.0.4.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-netpyne-1.0.4.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd netpyne-1.0.4.2 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/767.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i 's/matplotlib<=3.5.1/matplotlib/' setup.py + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.fE2boK + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.4.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.4.2/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) running egg_info creating netpyne.egg-info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt writing manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.4.2/netpyne-1.0.4.2.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: numpy Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: scipy Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: matplotlib Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: matplotlib-scalebar Handling future from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: future Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: pandas Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: bokeh Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: schema Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement not satisfied: lfpykit + cat /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.4.2.dist-info/ removed 'netpyne-1.0.4.2.dist-info/LICENSE' removed 'netpyne-1.0.4.2.dist-info/METADATA' removed 'netpyne-1.0.4.2.dist-info/top_level.txt' removed directory 'netpyne-1.0.4.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.4.2-1.fc38.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1690367528.130056/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a59ff7fdb5034270a5bdc90021b3eaaf', '-D', '/var/lib/mock/fedora-38-x86_64-1690367528.130056/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1690329600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.g0fXDl + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf netpyne-1.0.4.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-netpyne-1.0.4.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd netpyne-1.0.4.2 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/767.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i 's/matplotlib<=3.5.1/matplotlib/' setup.py + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.S4dLLE + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.4.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.4.2/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) running egg_info creating netpyne.egg-info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt writing manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.4.2/netpyne-1.0.4.2.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: numpy (installed: numpy 1.24.4) Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: scipy (installed: scipy 1.11.1) Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib (installed: matplotlib 3.7.2) Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib-scalebar (installed: matplotlib-scalebar 0.8.1) Handling future from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: future (installed: future 0.18.3) Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: pandas (installed: pandas 1.5.3) Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: bokeh (installed: bokeh 2.3.0) Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: schema (installed: schema 0.7.5) Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: lfpykit (installed: lfpykit 0.5) + cat /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.4.2.dist-info/ removed 'netpyne-1.0.4.2.dist-info/LICENSE' removed 'netpyne-1.0.4.2.dist-info/METADATA' removed 'netpyne-1.0.4.2.dist-info/top_level.txt' removed directory 'netpyne-1.0.4.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.4.2-1.fc38.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1690367528.130056/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0a2726a6827b4d70bc3f988eaf4c65d1', '-D', '/var/lib/mock/fedora-38-x86_64-1690367528.130056/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.f2svbmed:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1690329600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Fn55pS + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.4.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.4.2/pyproject-wheeldir --output /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-buildrequires Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) running dist_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.4.2/netpyne-1.0.4.2.dist-info' Handling numpy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: numpy (installed: numpy 1.24.4) Handling scipy from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: scipy (installed: scipy 1.11.1) Handling matplotlib from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib (installed: matplotlib 3.7.2) Handling matplotlib-scalebar from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: matplotlib-scalebar (installed: matplotlib-scalebar 0.8.1) Handling future from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: future (installed: future 0.18.3) Handling pandas from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: pandas (installed: pandas 1.5.3) Handling bokeh from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: bokeh (installed: bokeh 2.3.0) Handling schema from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: schema (installed: schema 0.7.5) Handling lfpykit from hook generated metadata: Requires-Dist (netpyne) Requirement satisfied: lfpykit (installed: lfpykit 0.5) + cat /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-buildrequires + rm -rfv netpyne-1.0.4.2.dist-info/ removed 'netpyne-1.0.4.2.dist-info/LICENSE' removed 'netpyne-1.0.4.2.dist-info/METADATA' removed 'netpyne-1.0.4.2.dist-info/top_level.txt' removed directory 'netpyne-1.0.4.2.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LOeH7D + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.4.2 + mkdir -p /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/netpyne-1.0.4.2/pyproject-wheeldir Processing /builddir/build/BUILD/netpyne-1.0.4.2 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne.egg-info writing /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-modern-metadata-bqbinict/netpyne-1.0.4.2.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: netpyne Building wheel for netpyne (pyproject.toml): started Running command Building wheel for netpyne (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/netpyne copying netpyne/__init__.py -> build/lib/netpyne creating build/lib/netpyne/tests copying netpyne/tests/__init__.py -> build/lib/netpyne/tests copying netpyne/tests/checks.py -> build/lib/netpyne/tests copying netpyne/tests/tests.py -> build/lib/netpyne/tests copying netpyne/tests/validate_tests.py -> build/lib/netpyne/tests creating build/lib/netpyne/support copying netpyne/support/__init__.py -> build/lib/netpyne/support copying netpyne/support/bsmart.py -> build/lib/netpyne/support copying netpyne/support/csd.py -> build/lib/netpyne/support copying netpyne/support/filter.py -> build/lib/netpyne/support copying netpyne/support/morlet.py -> build/lib/netpyne/support copying netpyne/support/morphology.py -> build/lib/netpyne/support copying netpyne/support/nml_reader.py -> build/lib/netpyne/support copying netpyne/support/recxelectrode.py -> build/lib/netpyne/support copying netpyne/support/scalebar.py -> build/lib/netpyne/support copying netpyne/support/stackedBarGraph.py -> build/lib/netpyne/support creating build/lib/netpyne/specs copying netpyne/specs/__init__.py -> build/lib/netpyne/specs copying netpyne/specs/dicts.py -> build/lib/netpyne/specs copying netpyne/specs/netParams.py -> build/lib/netpyne/specs copying netpyne/specs/simConfig.py -> build/lib/netpyne/specs copying netpyne/specs/utils.py -> build/lib/netpyne/specs creating build/lib/netpyne/sim copying netpyne/sim/__init__.py -> build/lib/netpyne/sim copying netpyne/sim/gather.py -> build/lib/netpyne/sim copying netpyne/sim/load.py -> build/lib/netpyne/sim copying netpyne/sim/run.py -> build/lib/netpyne/sim copying netpyne/sim/save.py -> build/lib/netpyne/sim copying netpyne/sim/setup.py -> build/lib/netpyne/sim copying netpyne/sim/utils.py -> build/lib/netpyne/sim copying netpyne/sim/validate.py -> build/lib/netpyne/sim copying netpyne/sim/validator.py -> build/lib/netpyne/sim copying netpyne/sim/wrappers.py -> build/lib/netpyne/sim creating build/lib/netpyne/plotting copying netpyne/plotting/__init__.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotCSD.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPLocations.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPPSD.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPSpectrogram.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPTimeSeries.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotRaster.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotShape.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotSpikeFreq.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotSpikeHist.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotter.py -> build/lib/netpyne/plotting creating build/lib/netpyne/network copying netpyne/network/__init__.py -> build/lib/netpyne/network copying netpyne/network/conn.py -> build/lib/netpyne/network copying netpyne/network/modify.py -> build/lib/netpyne/network copying netpyne/network/netrxd.py -> build/lib/netpyne/network copying netpyne/network/network.py -> build/lib/netpyne/network copying netpyne/network/pop.py -> build/lib/netpyne/network copying netpyne/network/shape.py -> build/lib/netpyne/network copying netpyne/network/stim.py -> build/lib/netpyne/network copying netpyne/network/subconn.py -> build/lib/netpyne/network creating build/lib/netpyne/metadata copying netpyne/metadata/__init__.py -> build/lib/netpyne/metadata copying netpyne/metadata/api.py -> build/lib/netpyne/metadata copying netpyne/metadata/metadata.py -> build/lib/netpyne/metadata creating build/lib/netpyne/conversion copying netpyne/conversion/__init__.py -> build/lib/netpyne/conversion copying netpyne/conversion/excel.py -> build/lib/netpyne/conversion copying netpyne/conversion/neuromlFormat.py -> build/lib/netpyne/conversion copying netpyne/conversion/neuronPyHoc.py -> build/lib/netpyne/conversion copying netpyne/conversion/pythonScript.py -> build/lib/netpyne/conversion copying netpyne/conversion/sonataImport.py -> build/lib/netpyne/conversion creating build/lib/netpyne/cell copying netpyne/cell/NML2Cell.py -> build/lib/netpyne/cell copying netpyne/cell/NML2SpikeSource.py -> build/lib/netpyne/cell copying netpyne/cell/__init__.py -> build/lib/netpyne/cell copying netpyne/cell/cell.py -> build/lib/netpyne/cell copying netpyne/cell/compartCell.py -> build/lib/netpyne/cell copying netpyne/cell/inputs.py -> build/lib/netpyne/cell copying netpyne/cell/pointCell.py -> build/lib/netpyne/cell creating build/lib/netpyne/batch copying netpyne/batch/__init__.py -> build/lib/netpyne/batch copying netpyne/batch/asd_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/batch.py -> build/lib/netpyne/batch copying netpyne/batch/evol.py -> build/lib/netpyne/batch copying netpyne/batch/grid.py -> build/lib/netpyne/batch copying netpyne/batch/optuna_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/sbi_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/utils.py -> build/lib/netpyne/batch creating build/lib/netpyne/analysis copying netpyne/analysis/__init__.py -> build/lib/netpyne/analysis copying netpyne/analysis/csd.py -> build/lib/netpyne/analysis copying netpyne/analysis/csd_legacy.py -> build/lib/netpyne/analysis copying netpyne/analysis/dipole.py -> build/lib/netpyne/analysis copying netpyne/analysis/filter.py -> build/lib/netpyne/analysis copying netpyne/analysis/info.py -> build/lib/netpyne/analysis copying netpyne/analysis/interactive.py -> build/lib/netpyne/analysis copying netpyne/analysis/lfp.py -> build/lib/netpyne/analysis copying netpyne/analysis/lfp_orig.py -> build/lib/netpyne/analysis copying netpyne/analysis/mapping.py -> build/lib/netpyne/analysis copying netpyne/analysis/network.py -> build/lib/netpyne/analysis copying netpyne/analysis/rxd.py -> build/lib/netpyne/analysis copying netpyne/analysis/spikes.py -> build/lib/netpyne/analysis copying netpyne/analysis/spikes_legacy.py -> build/lib/netpyne/analysis copying netpyne/analysis/tools.py -> build/lib/netpyne/analysis copying netpyne/analysis/traces.py -> build/lib/netpyne/analysis copying netpyne/analysis/utils.py -> build/lib/netpyne/analysis copying netpyne/analysis/wrapper.py -> build/lib/netpyne/analysis installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/netpyne creating build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/wrapper.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/traces.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/tools.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/spikes_legacy.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/spikes.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/rxd.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/network.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/mapping.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/lfp_orig.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/lfp.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/interactive.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/info.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/filter.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/dipole.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/csd_legacy.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/csd.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis creating build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/sbi_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/optuna_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/grid.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/evol.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/batch.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/asd_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/batch creating build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/pointCell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/inputs.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/compartCell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/cell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/NML2SpikeSource.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/NML2Cell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell creating build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/sonataImport.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/pythonScript.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/neuronPyHoc.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/neuromlFormat.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/excel.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion creating build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/metadata.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/api.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata creating build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/subconn.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/stim.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/shape.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/pop.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/network.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/netrxd.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/modify.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/conn.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/network creating build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotter.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotSpikeHist.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotSpikeFreq.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotShape.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotRaster.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPTimeSeries.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPSpectrogram.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPPSD.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPLocations.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotCSD.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting creating build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/wrappers.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/validator.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/validate.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/setup.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/save.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/run.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/load.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/gather.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/sim creating build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/simConfig.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/netParams.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/dicts.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/specs creating build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/stackedBarGraph.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/scalebar.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/recxelectrode.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/nml_reader.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/morphology.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/morlet.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/filter.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/csd.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/bsmart.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/support creating build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/validate_tests.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/tests.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/checks.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne running install_egg_info running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Copying netpyne.egg-info to build/bdist.linux-x86_64/wheel/netpyne-1.0.4.2-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/netpyne-1.0.4.2.dist-info/WHEEL creating '/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir/pip-wheel-kvvwdd3w/.tmp-9z9dk4v7/netpyne-1.0.4.2-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'netpyne/__init__.py' adding 'netpyne/analysis/__init__.py' adding 'netpyne/analysis/csd.py' adding 'netpyne/analysis/csd_legacy.py' adding 'netpyne/analysis/dipole.py' adding 'netpyne/analysis/filter.py' adding 'netpyne/analysis/info.py' adding 'netpyne/analysis/interactive.py' adding 'netpyne/analysis/lfp.py' adding 'netpyne/analysis/lfp_orig.py' adding 'netpyne/analysis/mapping.py' adding 'netpyne/analysis/network.py' adding 'netpyne/analysis/rxd.py' adding 'netpyne/analysis/spikes.py' adding 'netpyne/analysis/spikes_legacy.py' adding 'netpyne/analysis/tools.py' adding 'netpyne/analysis/traces.py' adding 'netpyne/analysis/utils.py' adding 'netpyne/analysis/wrapper.py' adding 'netpyne/batch/__init__.py' adding 'netpyne/batch/asd_parallel.py' adding 'netpyne/batch/batch.py' adding 'netpyne/batch/evol.py' adding 'netpyne/batch/grid.py' adding 'netpyne/batch/optuna_parallel.py' adding 'netpyne/batch/sbi_parallel.py' adding 'netpyne/batch/utils.py' adding 'netpyne/cell/NML2Cell.py' adding 'netpyne/cell/NML2SpikeSource.py' adding 'netpyne/cell/__init__.py' adding 'netpyne/cell/cell.py' adding 'netpyne/cell/compartCell.py' adding 'netpyne/cell/inputs.py' adding 'netpyne/cell/pointCell.py' adding 'netpyne/conversion/__init__.py' adding 'netpyne/conversion/excel.py' adding 'netpyne/conversion/neuromlFormat.py' adding 'netpyne/conversion/neuronPyHoc.py' adding 'netpyne/conversion/pythonScript.py' adding 'netpyne/conversion/sonataImport.py' adding 'netpyne/metadata/__init__.py' adding 'netpyne/metadata/api.py' adding 'netpyne/metadata/metadata.py' adding 'netpyne/network/__init__.py' adding 'netpyne/network/conn.py' adding 'netpyne/network/modify.py' adding 'netpyne/network/netrxd.py' adding 'netpyne/network/network.py' adding 'netpyne/network/pop.py' adding 'netpyne/network/shape.py' adding 'netpyne/network/stim.py' adding 'netpyne/network/subconn.py' adding 'netpyne/plotting/__init__.py' adding 'netpyne/plotting/plotCSD.py' adding 'netpyne/plotting/plotLFPLocations.py' adding 'netpyne/plotting/plotLFPPSD.py' adding 'netpyne/plotting/plotLFPSpectrogram.py' adding 'netpyne/plotting/plotLFPTimeSeries.py' adding 'netpyne/plotting/plotRaster.py' adding 'netpyne/plotting/plotShape.py' adding 'netpyne/plotting/plotSpikeFreq.py' adding 'netpyne/plotting/plotSpikeHist.py' adding 'netpyne/plotting/plotter.py' adding 'netpyne/sim/__init__.py' adding 'netpyne/sim/gather.py' adding 'netpyne/sim/load.py' adding 'netpyne/sim/run.py' adding 'netpyne/sim/save.py' adding 'netpyne/sim/setup.py' adding 'netpyne/sim/utils.py' adding 'netpyne/sim/validate.py' adding 'netpyne/sim/validator.py' adding 'netpyne/sim/wrappers.py' adding 'netpyne/specs/__init__.py' adding 'netpyne/specs/dicts.py' adding 'netpyne/specs/netParams.py' adding 'netpyne/specs/simConfig.py' adding 'netpyne/specs/utils.py' adding 'netpyne/support/__init__.py' adding 'netpyne/support/bsmart.py' adding 'netpyne/support/csd.py' adding 'netpyne/support/filter.py' adding 'netpyne/support/morlet.py' adding 'netpyne/support/morphology.py' adding 'netpyne/support/nml_reader.py' adding 'netpyne/support/recxelectrode.py' adding 'netpyne/support/scalebar.py' adding 'netpyne/support/stackedBarGraph.py' adding 'netpyne/tests/__init__.py' adding 'netpyne/tests/checks.py' adding 'netpyne/tests/tests.py' adding 'netpyne/tests/validate_tests.py' adding 'netpyne-1.0.4.2.dist-info/LICENSE' adding 'netpyne-1.0.4.2.dist-info/METADATA' adding 'netpyne-1.0.4.2.dist-info/WHEEL' adding 'netpyne-1.0.4.2.dist-info/top_level.txt' adding 'netpyne-1.0.4.2.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for netpyne (pyproject.toml): finished with status 'done' Created wheel for netpyne: filename=netpyne-1.0.4.2-py3-none-any.whl size=406738 sha256=7103dbc4bf16ba3186f95c1ead209d9d063666d73f90f55942f4ca68408a58b9 Stored in directory: /builddir/.cache/pip/wheels/d6/7f/12/1fd26a394e8bf4473f035a4d59b6263c69eea2912adebcdade Successfully built netpyne + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.eZtfw0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.4.2 ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ ls /builddir/build/BUILD/netpyne-1.0.4.2/pyproject-wheeldir/netpyne-1.0.4.2-py3-none-any.whl + specifier=netpyne==1.0.4.2 + TMPDIR=/builddir/build/BUILD/netpyne-1.0.4.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/netpyne-1.0.4.2/pyproject-wheeldir netpyne==1.0.4.2 Using pip 23.1.2 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/netpyne-1.0.4.2/pyproject-wheeldir Processing ./pyproject-wheeldir/netpyne-1.0.4.2-py3-none-any.whl Installing collected packages: netpyne Successfully installed netpyne-1.0.4.2 + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages ']' + site_dirs+=("/usr/lib/python3.11/site-packages") + '[' /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.11/site-packages/netpyne-1.0.4.2.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.4.2.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 --record /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.4.2.dist-info/RECORD --output /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.4.2.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.4.2.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.4.2.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.4.2.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=8 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-record --prefix /usr netpyne + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11 using python3.11 /usr/lib/python3.11/site-packages/netpyne/analysis/csd_legacy.py:574: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/csd_legacy.py:574: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/csd_legacy.py:574: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/csd_legacy.py:574: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/spikes_legacy.py:600: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/spikes_legacy.py:600: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/plotting/plotCSD.py:189: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/plotting/plotCSD.py:189: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/plotting/plotCSD.py:189: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/plotting/plotCSD.py:189: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/support/stackedBarGraph.py:198: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.11/site-packages/netpyne/support/stackedBarGraph.py:198: SyntaxWarning: "is not" with a literal. Did you mean "!="? + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.uk8VhP + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.4.2 + '[' '!' -f /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-netpyne-1.0.4.2-1.fc38.x86_64-pyproject-modules -e '*optuna*' -e '*sbi*' Check import: netpyne Warning: no DISPLAY environment variable. --No graphics will be displayed. Check import: netpyne.analysis Check import: netpyne.analysis.csd Check import: netpyne.analysis.csd_legacy Check import: netpyne.analysis.dipole Check import: netpyne.analysis.filter Check import: netpyne.analysis.info Check import: netpyne.analysis.interactive Check import: netpyne.analysis.lfp Check import: netpyne.analysis.lfp_orig Check import: netpyne.analysis.mapping Check import: netpyne.analysis.network Check import: netpyne.analysis.rxd Check import: netpyne.analysis.spikes Check import: netpyne.analysis.spikes_legacy Check import: netpyne.analysis.tools Check import: netpyne.analysis.traces Check import: netpyne.analysis.utils Check import: netpyne.analysis.wrapper Check import: netpyne.batch Check import: netpyne.batch.asd_parallel Check import: netpyne.batch.batch Check import: netpyne.batch.evol Check import: netpyne.batch.grid Check import: netpyne.batch.utils Check import: netpyne.cell Check import: netpyne.cell.NML2Cell Check import: netpyne.cell.NML2SpikeSource Check import: netpyne.cell.cell Check import: netpyne.cell.compartCell Check import: netpyne.cell.inputs Check import: netpyne.cell.pointCell Check import: netpyne.conversion Check import: netpyne.conversion.excel Check import: netpyne.conversion.neuromlFormat Check import: netpyne.conversion.neuronPyHoc Check import: netpyne.conversion.pythonScript Check import: netpyne.conversion.sonataImport Check import: netpyne.metadata Check import: netpyne.metadata.api Check import: netpyne.metadata.metadata Check import: netpyne.network Check import: netpyne.network.conn Check import: netpyne.network.modify Check import: netpyne.network.netrxd Check import: netpyne.network.network Check import: netpyne.network.pop Check import: netpyne.network.shape Check import: netpyne.network.stim Check import: netpyne.network.subconn Check import: netpyne.plotting Check import: netpyne.plotting.plotCSD Check import: netpyne.plotting.plotLFPLocations Check import: netpyne.plotting.plotLFPPSD Check import: netpyne.plotting.plotLFPSpectrogram Check import: netpyne.plotting.plotLFPTimeSeries Check import: netpyne.plotting.plotRaster Check import: netpyne.plotting.plotShape Check import: netpyne.plotting.plotSpikeFreq Check import: netpyne.plotting.plotSpikeHist Check import: netpyne.plotting.plotter Check import: netpyne.sim Check import: netpyne.sim.gather Check import: netpyne.sim.load Check import: netpyne.sim.run Check import: netpyne.sim.save Check import: netpyne.sim.setup Check import: netpyne.sim.utils Check import: netpyne.sim.validate Check import: netpyne.sim.validator Check import: netpyne.sim.wrappers Check import: netpyne.specs Check import: netpyne.specs.dicts Check import: netpyne.specs.netParams Check import: netpyne.specs.simConfig Check import: netpyne.specs.utils Check import: netpyne.support Check import: netpyne.support.bsmart Check import: netpyne.support.csd Check import: netpyne.support.filter Check import: netpyne.support.morlet Check import: netpyne.support.morphology Check import: netpyne.support.nml_reader Check import: netpyne.support.recxelectrode Check import: netpyne.support.scalebar Check import: netpyne.support.stackedBarGraph Check import: netpyne.tests Check import: netpyne.tests.checks Check import: netpyne.tests.tests Check import: netpyne.tests.validate_tests Note: SONATA import failed; import/export functions for SONATA will not be available. To use this feature install these Python packages: ['tables', 'pyneuroml', 'neuroml'] ERROR: popParams->'cellModel': No cellModel specified in population parameters..Values provided are: {'cellType': 'PYR', 'numCells': 50} ~/build/BUILD/netpyne-1.0.4.2/doc/source/code ~/build/BUILD/netpyne-1.0.4.2 + export PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64//usr/lib/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64//usr/lib/python3.11/site-packages + pushd doc/source/code + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code Mod files: "mod/mod/A.mod" "mod/mod/AMPA.mod" "mod/mod/ElectSyn.mod" "mod/mod/GABAa.mod" "mod/mod/GradedSyn.mod" "mod/mod/MyExp2SynBB.mod" "mod/mod/MyExp2SynNMDABB.mod" "mod/mod/NMDA.mod" "mod/mod/Nca.mod" "mod/mod/OFThpo.mod" "mod/mod/OFThresh.mod" "mod/mod/ar.mod" "mod/mod/cad.mod" "mod/mod/cadad.mod" "mod/mod/cal.mod" "mod/mod/cat.mod" "mod/mod/expsynstdp.mod" "mod/mod/iholmw.mod" "mod/mod/izhi2003a.mod" "mod/mod/izhi2003b.mod" "mod/mod/izhi2007a.mod" "mod/mod/izhi2007b.mod" "mod/mod/k2.mod" "mod/mod/ka.mod" "mod/mod/kacurrent.mod" "mod/mod/kahp.mod" "mod/mod/kc.mod" "mod/mod/kca.mod" "mod/mod/kdr.mod" "mod/mod/kdrcurrent.mod" "mod/mod/km.mod" "mod/mod/km2.mod" "mod/mod/kv.mod" "mod/mod/nacurrent.mod" "mod/mod/naf.mod" "mod/mod/nap.mod" "mod/mod/naz.mod" "mod/mod/vecevent.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/A.mod -> NMODL ../mod/AMPA.mod Translating A.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/A.c INCLUDEing ofc.inc Thread Safe Translating AMPA.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/AMPA.c -> NMODL ../mod/ElectSyn.mod INCLUDEing ../netcon.inc Thread Safe -> NMODL ../mod/GABAa.mod Translating ElectSyn.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/ElectSyn.c Thread Safe Translating GABAa.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/GABAa.c INCLUDEing ../netcon.inc -> NMODL ../mod/GradedSyn.mod Thread Safe -> NMODL ../mod/MyExp2SynBB.mod Translating GradedSyn.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/GradedSyn.c Thread Safe -> NMODL ../mod/MyExp2SynNMDABB.mod -> NMODL ../mod/NMDA.mod Translating MyExp2SynBB.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/MyExp2SynBB.c Thread Safe Translating MyExp2SynNMDABB.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/MyExp2SynNMDABB.c Thread Safe -> NMODL ../mod/Nca.mod Translating NMDA.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/NMDA.c INCLUDEing ../netcon.inc Thread Safe -> NMODL ../mod/OFThpo.mod Translating Nca.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/Nca.c Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe -> NMODL ../mod/OFThresh.mod Translating OFThpo.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/OFThpo.c Thread Safe -> NMODL ../mod/ar.mod -> NMODL ../mod/cad.mod Translating OFThresh.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/OFThresh.c Translating ar.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/ar.c Thread Safe Thread Safe -> NMODL ../mod/cadad.mod -> NMODL ../mod/cal.mod Translating cad.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/cad.c Thread Safe -> NMODL ../mod/cat.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/cadad.c -> NMODL ../mod/expsynstdp.mod Thread Safe Translating cal.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/cal.c Thread Safe Translating cat.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/cat.c -> NMODL ../mod/iholmw.mod Thread Safe Translating expsynstdp.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/expsynstdp.c -> NMODL ../mod/izhi2003a.mod Thread Safe Translating iholmw.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/iholmw.c -> NMODL ../mod/izhi2003b.mod INCLUDEing aux_fun.inc Thread Safe Translating izhi2003a.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/izhi2003a.c Thread Safe -> NMODL ../mod/izhi2007a.mod -> NMODL ../mod/izhi2007b.mod Translating izhi2003b.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/izhi2003b.c Thread Safe Translating izhi2007a.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/izhi2007a.c -> NMODL ../mod/k2.mod Notice: VERBATIM blocks are not thread safe Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/izhi2007b.c -> NMODL ../mod/ka.mod Notice: VERBATIM blocks are not thread safe -> NMODL ../mod/kacurrent.mod Translating k2.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/k2.c Thread Safe Translating ka.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/ka.c -> NMODL ../mod/kahp.mod Thread Safe -> NMODL ../mod/kc.mod Translating kacurrent.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/kacurrent.c Translating kahp.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/kahp.c Thread Safe Thread Safe -> NMODL ../mod/kca.mod Translating kc.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/kc.c Thread Safe -> NMODL ../mod/kdr.mod -> NMODL ../mod/kdrcurrent.mod Translating kca.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/kca.c Translating kdr.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/kdr.c Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe Thread Safe -> NMODL ../mod/km.mod -> NMODL ../mod/km2.mod Translating kdrcurrent.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/kdrcurrent.c Thread Safe Translating km.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/km.c -> NMODL ../mod/kv.mod Thread Safe Translating km2.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/km2.c Thread Safe -> NMODL ../mod/nacurrent.mod -> NMODL ../mod/naf.mod -> NMODL ../mod/nap.mod Translating kv.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/kv.c Notice: Assignment to the GLOBAL variable, "ntau", is not thread safe Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe Translating nacurrent.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/nacurrent.c Translating naf.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/naf.c Thread Safe Thread Safe -> NMODL ../mod/naz.mod -> NMODL ../mod/vecevent.mod Translating nap.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/nap.c Thread Safe Translating naz.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/naz.c Notice: Assignment to the GLOBAL variable, "htau", is not thread safe Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "mtau", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe -> Compiling A.c -> Compiling AMPA.c Translating vecevent.mod into /builddir/build/BUILD/netpyne-1.0.4.2/doc/source/code/x86_64/vecevent.c Thread Safe Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it only affects and is affected by discrete events. As such it is not located in a section and is not associated with an integrator -> Compiling ElectSyn.c -> Compiling GABAa.c -> Compiling GradedSyn.c -> Compiling MyExp2SynBB.c -> Compiling MyExp2SynNMDABB.c -> Compiling NMDA.c -> Compiling Nca.c -> Compiling OFThpo.c -> Compiling OFThresh.c -> Compiling ar.c -> Compiling cad.c -> Compiling cadad.c -> Compiling cal.c -> Compiling cat.c -> Compiling expsynstdp.c -> Compiling iholmw.c -> Compiling izhi2003a.c -> Compiling izhi2003b.c -> Compiling izhi2007a.c -> Compiling izhi2007b.c -> Compiling k2.c -> Compiling ka.c -> Compiling kacurrent.c -> Compiling kahp.c -> Compiling kc.c -> Compiling kca.c -> Compiling kdr.c -> Compiling kdrcurrent.c -> Compiling km.c -> Compiling km2.c -> Compiling kv.c -> Compiling nacurrent.c -> Compiling naf.c -> Compiling nap.c -> Compiling naz.c -> Compiling vecevent.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 tut2.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-07-26 10:34:09.145174 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 40 Done; cell creation time = 0.00 s. Making connections... Number of connections on node 0: 240 Done; cell connection time = 0.02 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.00 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.60 s; real-time ratio: 1.67. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 280 (7.00 per cell) Spikes: 931 (23.27 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.60 s Saving output as tut2_data.json ... Finished saving! Done; saving time = 0.08 s. Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.51 s Total time = 1.23 s + /usr/bin/python3 tut3.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-07-26 10:34:11.420684 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 40 Done; cell creation time = 0.00 s. Making connections... Number of connections on node 0: 203 Done; cell connection time = 0.02 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.00 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.46 s; real-time ratio: 2.16. Gathering data... Done; gather time = 0.05 s. Analyzing... Cells: 40 Connections: 243 (6.08 per cell) Spikes: 560 (14.00 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.46 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.48 s Total time = 1.02 s + /usr/bin/python3 tut4.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-07-26 10:34:13.507931 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 40 Done; cell creation time = 0.00 s. Making connections... Number of connections on node 0: 33 Done; cell connection time = 0.00 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.00 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.28 s; real-time ratio: 3.62. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 73 (1.82 per cell) Spikes: 1186 (29.65 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.28 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.48 s Total time = 0.77 s + /usr/bin/python3 tut5.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-07-26 10:34:15.337211 Creating network of 6 cell populations on 1 hosts... Number of cells on node 0: 300 Done; cell creation time = 0.07 s. Making connections... Number of connections on node 0: 6796 Done; cell connection time = 0.86 s. Adding stims... Number of stims on node 0: 300 Done; cell stims creation time = 0.03 s. Recording 0 traces of 0 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 8.56 s; real-time ratio: 0.12. Gathering data... Done; gather time = 0.14 s. Analyzing... Cells: 300 Connections: 7096 (23.65 per cell) Spikes: 4808 (16.03 Hz) Simulated time: 1.0 s; 1 workers Run time: 8.56 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Done; plotting time = 0.32 s Total time = 9.98 s + /usr/bin/python3 tut6.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-07-26 10:34:26.374666 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 40 Done; cell creation time = 0.00 s. Making connections... Number of connections on node 0: 0 Done; cell connection time = 0.00 s. Adding stims... Number of stims on node 0: 48 Done; cell stims creation time = 0.00 s. Recording 2 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.25 s; real-time ratio: 3.94. Gathering data... Done; gather time = 0.00 s. Analyzing... Cells: 40 Connections: 16 (0.40 per cell) Spikes: 134 (3.35 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.25 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell Done; plotting time = 0.38 s Total time = 0.64 s + /usr/bin/python3 tut7.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-07-26 10:34:28.038934 Creating network of 1 cell populations on 1 hosts... Number of cells on node 0: 50 Done; cell creation time = 0.00 s. Making connections... Number of connections on node 0: 2450 Done; cell connection time = 0.24 s. Adding stims... Number of stims on node 0: 50 Done; cell stims creation time = 0.00 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 500.0 ms... Done; run time = 1.21 s; real-time ratio: 0.41. Gathering data... Done; gather time = 0.05 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 1261 (50.44 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.21 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'NoneType' object has no attribute 'plot' (, AttributeError("'NoneType' object has no attribute 'plot'"), ) Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 1.55 s Total time = 3.05 s Modfying connection parameters... Done; connections modification time = 0.00 s. Running simulation using NEURON for 500.0 ms... Done; run time = 1.50 s; real-time ratio: 0.33. Gathering data... Done; gather time = 0.05 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 583 (23.32 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.50 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'NoneType' object has no attribute 'plot' (, AttributeError("'NoneType' object has no attribute 'plot'"), ) Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 1.49 s Modfying cell parameters... Done; cells modification time = 0.00 s. Running simulation using NEURON for 500.0 ms... Done; run time = 1.57 s; real-time ratio: 0.32. Gathering data... Done; gather time = 0.05 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 332 (13.28 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.57 s Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell ~/build/BUILD/netpyne-1.0.4.2 ~/build/BUILD/netpyne-1.0.4.2/examples/HHTut ~/build/BUILD/netpyne-1.0.4.2 + popd + pushd examples/HHTut + /usr/bin/python3 HHTut_run.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.4.2/examples/HHTut/HHTut_run.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.4.2 ~/build/BUILD/netpyne-1.0.4.2/examples/HybridTut ~/build/BUILD/netpyne-1.0.4.2 + pushd examples/HybridTut + nrnivmodl . /builddir/build/BUILD/netpyne-1.0.4.2/examples/HybridTut Mod files: Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 HybridTut_run.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.4.2/examples/HybridTut/HybridTut_run.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.4.2 ~/build/BUILD/netpyne-1.0.4.2/examples/M1 ~/build/BUILD/netpyne-1.0.4.2 + pushd examples/M1 + nrnivmodl . /builddir/build/BUILD/netpyne-1.0.4.2/examples/M1 Mod files: Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 M1_run.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.4.2/examples/M1/M1_run.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.4.2 ~/build/BUILD/netpyne-1.0.4.2/examples/PTcell ~/build/BUILD/netpyne-1.0.4.2 + pushd examples/PTcell + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell Mod files: "mod/mod/HCN1.mod" "mod/mod/IC.mod" "mod/mod/IKsin.mod" "mod/mod/MyExp2SynBB.mod" "mod/mod/MyExp2SynNMDABB.mod" "mod/mod/ar_traub.mod" "mod/mod/cadad.mod" "mod/mod/cadyn.mod" "mod/mod/cagk.mod" "mod/mod/cal_mh.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/canin.mod" "mod/mod/cat_mig.mod" "mod/mod/cat_traub.mod" "mod/mod/catcb.mod" "mod/mod/gabab.mod" "mod/mod/h_BS.mod" "mod/mod/h_harnett.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/hin.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kapcb.mod" "mod/mod/kapin.mod" "mod/mod/kctin.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/kdrin.mod" "mod/mod/nafx.mod" "mod/mod/nap_sidi.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" "mod/mod/vecstim.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/HCN1.mod -> NMODL ../mod/IC.mod Translating HCN1.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/HCN1.c Thread Safe Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/IC.c -> NMODL ../mod/IKsin.mod Thread Safe -> NMODL ../mod/MyExp2SynBB.mod Translating IKsin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/IKsin.c Thread Safe -> NMODL ../mod/MyExp2SynNMDABB.mod Translating MyExp2SynBB.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/MyExp2SynBB.c Thread Safe -> NMODL ../mod/ar_traub.mod Translating MyExp2SynNMDABB.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/MyExp2SynNMDABB.c INCLUDEing ghk.inc Warning: celsius undefined. (declared within VERBATIM?) Thread Safe -> NMODL ../mod/cadad.mod Translating ar_traub.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/ar_traub.c Thread Safe -> NMODL ../mod/cadyn.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/cadad.c Thread Safe -> NMODL ../mod/cagk.mod -> NMODL ../mod/cal_mh.mod Translating cadyn.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/cadyn.c Thread Safe Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/cagk.c Thread Safe Translating cal_mh.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/cal_mh.c Thread Safe -> NMODL ../mod/cal_mig.mod -> NMODL ../mod/can_mig.mod Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/cal_mig.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/canin.mod Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/can_mig.c -> NMODL ../mod/cat_mig.mod Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Translating canin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/canin.c Thread Safe -> NMODL ../mod/cat_traub.mod Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/cat_mig.c -> NMODL ../mod/catcb.mod Thread Safe Translating cat_traub.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/cat_traub.c Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. Thread Safe -> NMODL ../mod/gabab.mod -> NMODL ../mod/h_BS.mod Translating catcb.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/catcb.c Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe -> NMODL ../mod/h_harnett.mod Translating gabab.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/gabab.c -> NMODL ../mod/h_kole.mod Notice: Assignment to the GLOBAL variable, "warn", is not thread safe Translating h_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/h_BS.c Translating h_harnett.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/h_harnett.c Thread Safe Thread Safe Warning: Default 34 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/h_migliore.mod -> NMODL ../mod/hin.mod Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/h_kole.c Thread Safe -> NMODL ../mod/ican_sidi.mod Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/h_migliore.c -> NMODL ../mod/kBK.mod Thread Safe Translating hin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/hin.c Thread Safe Warning: Default -10 of PARAMETER ehi will be ignored and set by NEURON. Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/ican_sidi.c -> NMODL ../mod/kap_BS.mod Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/kBK.c Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/kapcb.mod Thread Safe -> NMODL ../mod/kapin.mod -> NMODL ../mod/kctin.mod Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/kap_BS.c Translating kapcb.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/kapcb.c Thread Safe Thread Safe -> NMODL ../mod/kdmc_BS.mod Translating kctin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/kctin.c Translating kapin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/kapin.c NEURON's CVode method ignores conservation Thread Safe -> NMODL ../mod/kdr_BS.mod Thread Safe -> NMODL ../mod/kdrin.mod Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/kdmc_BS.c Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/kdr_BS.c Thread Safe -> NMODL ../mod/nafx.mod Thread Safe -> NMODL ../mod/nax_BS.mod Translating kdrin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/kdrin.c -> NMODL ../mod/nap_sidi.mod Translating nafx.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/nafx.c Thread Safe Thread Safe Warning: Default 55 of PARAMETER ena will be ignored and set by NEURON. Translating nap_sidi.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/nap_sidi.c Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/nax_BS.c Thread Safe -> NMODL ../mod/savedist.mod -> NMODL ../mod/vecstim.mod Thread Safe -> Compiling HCN1.c Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/savedist.c Thread Safe -> Compiling IC.c -> Compiling IKsin.c Translating vecstim.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/x86_64/vecstim.c Thread Safe -> Compiling MyExp2SynBB.c -> Compiling MyExp2SynNMDABB.c -> Compiling ar_traub.c -> Compiling cadad.c -> Compiling cadyn.c -> Compiling cagk.c -> Compiling cal_mh.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling canin.c -> Compiling cat_mig.c -> Compiling cat_traub.c -> Compiling catcb.c -> Compiling gabab.c -> Compiling h_BS.c -> Compiling h_harnett.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling hin.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kapcb.c -> Compiling kapin.c -> Compiling kctin.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling kdrin.c -> Compiling nafx.c -> Compiling nap_sidi.c -> Compiling nax_BS.c -> Compiling savedist.c -> Compiling vecstim.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.4.2/examples/PTcell/init.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.4.2 ~/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording ~/build/BUILD/netpyne-1.0.4.2 + pushd examples/LFPrecording + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording Mod files: "mod/mod/IC.mod" "mod/mod/cadad.mod" "mod/mod/cagk.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/cat_mig.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/IC.mod -> NMODL ../mod/cadad.mod Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/IC.c Thread Safe -> NMODL ../mod/cagk.mod -> NMODL ../mod/cal_mig.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/cadad.c Thread Safe Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/cagk.c Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/cal_mig.c Thread Safe Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/can_mig.mod -> NMODL ../mod/cat_mig.mod -> NMODL ../mod/h_kole.mod Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/can_mig.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/cat_mig.c Thread Safe -> NMODL ../mod/h_migliore.mod Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/h_kole.c Thread Safe -> NMODL ../mod/ican_sidi.mod Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/h_migliore.c Thread Safe -> NMODL ../mod/kBK.mod Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/ican_sidi.c -> NMODL ../mod/kap_BS.mod Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/kBK.c Thread Safe Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/kdmc_BS.mod Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/kap_BS.c -> NMODL ../mod/kdr_BS.mod Thread Safe Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/kdmc_BS.c -> NMODL ../mod/nax_BS.mod Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/kdr_BS.c Thread Safe -> NMODL ../mod/savedist.mod Thread Safe Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/nax_BS.c -> Compiling IC.c Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/x86_64/savedist.c Thread Safe Thread Safe -> Compiling cadad.c -> Compiling cagk.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling cat_mig.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling nax_BS.c -> Compiling savedist.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 cell_lfp.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.4.2/examples/LFPrecording/cell_lfp.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.4.2 ~/build/BUILD/netpyne-1.0.4.2/examples/saving ~/build/BUILD/netpyne-1.0.4.2 + pushd examples/saving + /usr/bin/python3 init.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.4.2/examples/saving/init.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.4.2 ~/build/BUILD/netpyne-1.0.4.2/examples/rxd_buffering ~/build/BUILD/netpyne-1.0.4.2 + pushd examples/rxd_buffering + /usr/bin/python3 buffering.py -nogui /usr/bin/python3: can't open file '/builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_buffering/buffering.py': [Errno 2] No such file or directory + true + popd ~/build/BUILD/netpyne-1.0.4.2 ~/build/BUILD/netpyne-1.0.4.2/examples/rxd_net ~/build/BUILD/netpyne-1.0.4.2 + pushd examples/rxd_net/ + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net Mod files: "mod/mod/HCN1.mod" "mod/mod/IC.mod" "mod/mod/IKsin.mod" "mod/mod/ar_traub.mod" "mod/mod/cadad.mod" "mod/mod/cadyn.mod" "mod/mod/cagk.mod" "mod/mod/cal_mh.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/canin.mod" "mod/mod/cat_mig.mod" "mod/mod/cat_traub.mod" "mod/mod/catcb.mod" "mod/mod/gabab.mod" "mod/mod/h_BS.mod" "mod/mod/h_harnett.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/hin.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kapcb.mod" "mod/mod/kapin.mod" "mod/mod/kctin.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/kdrin.mod" "mod/mod/nafx.mod" "mod/mod/nap_sidi.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" "mod/mod/vecstim.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/HCN1.mod -> NMODL ../mod/IC.mod Translating HCN1.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/HCN1.c Thread Safe -> NMODL ../mod/IKsin.mod Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/IC.c Thread Safe -> NMODL ../mod/ar_traub.mod Translating IKsin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/IKsin.c Thread Safe Translating ar_traub.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/ar_traub.c -> NMODL ../mod/cadad.mod Thread Safe -> NMODL ../mod/cadyn.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/cadad.c Thread Safe Translating cadyn.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/cadyn.c Thread Safe -> NMODL ../mod/cagk.mod -> NMODL ../mod/cal_mh.mod Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/cagk.c Thread Safe Translating cal_mh.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/cal_mh.c Thread Safe -> NMODL ../mod/cal_mig.mod -> NMODL ../mod/can_mig.mod -> NMODL ../mod/canin.mod Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/cal_mig.c Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/can_mig.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/cat_mig.mod -> NMODL ../mod/cat_traub.mod Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/cat_mig.c Translating canin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/canin.c Thread Safe Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/catcb.mod -> NMODL ../mod/gabab.mod Translating cat_traub.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/cat_traub.c Thread Safe Translating catcb.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/catcb.c Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe Translating gabab.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/gabab.c -> NMODL ../mod/h_BS.mod -> NMODL ../mod/h_harnett.mod Notice: Assignment to the GLOBAL variable, "warn", is not thread safe -> NMODL ../mod/h_kole.mod Translating h_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/h_BS.c -> NMODL ../mod/h_migliore.mod Thread Safe Warning: Default 34 of PARAMETER celsius will be ignored and set by NEURON. Translating h_harnett.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/h_harnett.c Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/h_kole.c Thread Safe Thread Safe -> NMODL ../mod/hin.mod -> NMODL ../mod/ican_sidi.mod Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/h_migliore.c Thread Safe -> NMODL ../mod/kBK.mod -> NMODL ../mod/kap_BS.mod Translating hin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/hin.c Thread Safe Warning: Default -10 of PARAMETER ehi will be ignored and set by NEURON. Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/ican_sidi.c Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/kBK.c Thread Safe -> NMODL ../mod/kapcb.mod Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/kap_BS.c -> NMODL ../mod/kapin.mod Thread Safe -> NMODL ../mod/kctin.mod -> NMODL ../mod/kdmc_BS.mod Translating kapcb.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/kapcb.c Translating kapin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/kapin.c Thread Safe Thread Safe -> NMODL ../mod/kdr_BS.mod Translating kctin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/kctin.c Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/kdmc_BS.c -> NMODL ../mod/kdrin.mod NEURON's CVode method ignores conservation Thread Safe Thread Safe -> NMODL ../mod/nafx.mod Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/kdr_BS.c Translating kdrin.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/kdrin.c Thread Safe Thread Safe -> NMODL ../mod/nap_sidi.mod -> NMODL ../mod/nax_BS.mod Translating nafx.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/nafx.c Translating nap_sidi.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/nap_sidi.c -> NMODL ../mod/savedist.mod Thread Safe Thread Safe Warning: Default 55 of PARAMETER ena will be ignored and set by NEURON. -> NMODL ../mod/vecstim.mod Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/nax_BS.c Thread Safe Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/savedist.c -> Compiling HCN1.c Thread Safe -> Compiling IC.c Translating vecstim.mod into /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/x86_64/vecstim.c Thread Safe -> Compiling IKsin.c -> Compiling ar_traub.c -> Compiling cadad.c -> Compiling cadyn.c -> Compiling cagk.c -> Compiling cal_mh.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling canin.c -> Compiling cat_mig.c -> Compiling cat_traub.c -> Compiling catcb.c -> Compiling gabab.c -> Compiling h_BS.c -> Compiling h_harnett.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling hin.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kapcb.c -> Compiling kapin.c -> Compiling kctin.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling kdrin.c -> Compiling nafx.c -> Compiling nap_sidi.c -> Compiling nax_BS.c -> Compiling savedist.c -> Compiling vecstim.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 src/init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Loading model from /builddir/build/BUILD/netpyne-1.0.4.2/examples/rxd_net/index.npjson ... Loading simConfig: src/cfg.py ... Loading netParams: src/netParams.py ... Start time: 2023-07-26 10:34:43.207214 Creating network of 6 cell populations on 1 hosts... Number of cells on node 0: 60 Done; cell creation time = 0.09 s. Making connections... Number of connections on node 0: 309 Done; cell connection time = 0.04 s. Adding stims... Number of stims on node 0: 60 Done; cell stims creation time = 0.01 s. Adding RxD... Created Region cyt Created Region er Created Region cyt_er_membrane Created Extracellular Region ecs Created Species ca Created Species ip3 Created State ip3r_gate_state Created MultiCompartmentReaction serca Created MultiCompartmentReaction leak Created MultiCompartmentReaction ip3r Created Rate ip3rg Done; RxD setup time = 0.01 s. Recording 4 traces of 4 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 44.99 s; real-time ratio: 0.02. Gathering data... Done; gather time = 0.04 s. Analyzing... Cells: 60 Connections: 369 (6.15 per cell) Spikes: 937 (15.62 Hz) Simulated time: 1.0 s; 1 workers Run time: 44.99 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) ~/build/BUILD/netpyne-1.0.4.2 + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-netpyne-1.0.4.2-1.fc38.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.W9XlCu + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.4.2 + DOCDIR=/builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/share/doc/python3-netpyne + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/share/doc/python3-netpyne + cp -pr /builddir/build/BUILD/netpyne-1.0.4.2/README.md /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/share/doc/python3-netpyne + cp -pr /builddir/build/BUILD/netpyne-1.0.4.2/CHANGES.md /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64/usr/share/doc/python3-netpyne + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-netpyne = 1.0.4.2-1.fc38 python3-netpyne = 1.0.4.2-1.fc38 python3.11-netpyne = 1.0.4.2-1.fc38 python3.11dist(netpyne) = 1.0.4.2 python3dist(netpyne) = 1.0.4.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.11 python3.11dist(bokeh) python3.11dist(future) python3.11dist(lfpykit) python3.11dist(matplotlib) python3.11dist(matplotlib-scalebar) python3.11dist(numpy) python3.11dist(pandas) python3.11dist(schema) python3.11dist(scipy) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.4.2-1.fc38.src.rpm Wrote: /builddir/build/RPMS/python3-netpyne-1.0.4.2-1.fc38.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.bwskxU + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.4.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-netpyne-1.0.4.2-1.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Z5pT7e + umask 022 + cd /builddir/build/BUILD + rm -rf netpyne-1.0.4.2 netpyne-1.0.4.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0