Warning: Permanently added '35.172.121.145' (ED25519) to the list of known hosts.
100 25.9M  100 25.9M    0     0   372M      0 --:--:-- --:--:-- --:--:--  376M
INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vuub_lo1/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vuub_lo1/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633522.672366 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-vuub_lo1/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vuub_lo1/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725633522.672366 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-vuub_lo1/ProDy/ProDy.spec)  Config(fedora-41-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725633522.672366/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41
INFO: Pulling image: registry.fedoraproject.org/fedora:41
INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-x86_64-bootstrap-1725633522.672366/root
INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount
INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/f90a96f734823c955512bea1f3375745a611876676ecdcedd9d21240640f1467/merged
INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/f90a96f734823c955512bea1f3375745a611876676ecdcedd9d21240640f1467/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1725633522.672366/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.92-6.fc41.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  dnf5-5.2.5.0-2.fc41.x86_64
  dnf5-plugins-5.2.5.0-2.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 updates                                100% | 179.6 KiB/s |  31.4 KiB |  00m00s
 fedora                                 100% |  63.3 MiB/s |  35.3 MiB |  00m01s
 Copr repository                        100% |  85.3 MiB/s |   3.9 MiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository      Size
Installing group/module packages:
 bash                              x86_64 5.2.32-1.fc41              fedora       8.2 MiB
 bzip2                             x86_64 1.0.8-19.fc41              fedora      95.7 KiB
 coreutils                         x86_64 9.5-9.fc41                 fedora       5.6 MiB
 cpio                              x86_64 2.15-2.fc41                fedora       1.1 MiB
 diffutils                         x86_64 3.10-8.fc41                fedora       1.6 MiB
 fedora-release-common             noarch 41-0.21                    fedora      19.4 KiB
 findutils                         x86_64 1:4.10.0-4.fc41            fedora       1.8 MiB
 gawk                              x86_64 5.3.0-4.fc41               fedora       1.7 MiB
 glibc-minimal-langpack            x86_64 2.40-3.fc41                fedora       0.0   B
 grep                              x86_64 3.11-9.fc41                fedora       1.0 MiB
 gzip                              x86_64 1.13-2.fc41                fedora     389.0 KiB
 info                              x86_64 7.1-3.fc41                 fedora     361.8 KiB
 patch                             x86_64 2.7.6-25.fc41              fedora     266.7 KiB
 redhat-rpm-config                 noarch 293-1.fc41                 fedora     183.5 KiB
 rpm-build                         x86_64 4.19.93-1.fc41             copr_base  194.2 KiB
 sed                               x86_64 4.9-3.fc41                 fedora     861.5 KiB
 shadow-utils                      x86_64 2:4.15.1-9.fc41            fedora       4.1 MiB
 tar                               x86_64 2:1.35-4.fc41              fedora       2.9 MiB
 unzip                             x86_64 6.0-64.fc41                fedora     386.8 KiB
 util-linux                        x86_64 2.40.2-8.fc41              copr_base    3.6 MiB
 which                             x86_64 2.21-42.fc41               fedora      80.2 KiB
 xz                                x86_64 1:5.6.2-2.fc41             fedora       1.2 MiB
Installing dependencies:
 add-determinism                   x86_64 0.3.6-1.fc41               fedora       2.2 MiB
 alternatives                      x86_64 1.30-1.fc41                fedora      66.3 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  fedora      35.7 KiB
 audit-libs                        x86_64 4.0.2-1.fc41               copr_base  331.3 KiB
 authselect                        x86_64 1.5.0-7.fc41               fedora     153.5 KiB
 authselect-libs                   x86_64 1.5.0-7.fc41               fedora     818.3 KiB
 basesystem                        noarch 11-21.fc41                 fedora       0.0   B
 binutils                          x86_64 2.43-3.fc41                fedora      27.5 MiB
 build-reproducibility-srpm-macros noarch 0.3.6-1.fc41               fedora     735.0   B
 bzip2-libs                        x86_64 1.0.8-19.fc41              fedora      80.7 KiB
 ca-certificates                   noarch 2024.2.68_v8.0.302-3.fc41  fedora       2.3 MiB
 coreutils-common                  x86_64 9.5-9.fc41                 fedora      11.2 MiB
 cracklib                          x86_64 2.9.11-6.fc41              fedora     238.9 KiB
 crypto-policies                   noarch 20240826-1.gite824389.fc41 fedora     136.9 KiB
 curl                              x86_64 8.9.1-2.fc41               fedora     796.2 KiB
 cyrus-sasl-lib                    x86_64 2.1.28-27.fc41             fedora       2.3 MiB
 debugedit                         x86_64 5.0-17.fc41                fedora     199.3 KiB
 dwz                               x86_64 0.15-7.fc41                fedora     290.9 KiB
 ed                                x86_64 1.20.2-2.fc41              fedora     146.9 KiB
 efi-srpm-macros                   noarch 5-12.fc41                  fedora      40.1 KiB
 elfutils                          x86_64 0.191-8.fc41               fedora       2.6 MiB
 elfutils-debuginfod-client        x86_64 0.191-8.fc41               fedora      64.9 KiB
 elfutils-default-yama-scope       noarch 0.191-8.fc41               fedora       1.8 KiB
 elfutils-libelf                   x86_64 0.191-8.fc41               fedora       1.2 MiB
 elfutils-libs                     x86_64 0.191-8.fc41               fedora     646.2 KiB
 fedora-gpg-keys                   noarch 41-0.4                     fedora     126.4 KiB
 fedora-release                    noarch 41-0.21                    fedora       0.0   B
 fedora-release-identity-basic     noarch 41-0.21                    fedora     684.0   B
 fedora-repos                      noarch 41-0.4                     fedora       4.9 KiB
 file                              x86_64 5.45-7.fc41                fedora     103.5 KiB
 file-libs                         x86_64 5.45-7.fc41                fedora       9.9 MiB
 filesystem                        x86_64 3.18-23.fc41               fedora     106.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            fedora      55.8 KiB
 forge-srpm-macros                 noarch 0.3.2-1.fc41               fedora      39.0 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                fedora     144.0   B
 gdb-minimal                       x86_64 15.1-1.fc41                fedora      13.0 MiB
 gdbm                              x86_64 1:1.23-7.fc41              fedora     460.9 KiB
 gdbm-libs                         x86_64 1:1.23-7.fc41              fedora     121.9 KiB
 ghc-srpm-macros                   noarch 1.9.1-2.fc41               fedora     747.0   B
 glibc                             x86_64 2.40-3.fc41                fedora       6.7 MiB
 glibc-common                      x86_64 2.40-3.fc41                fedora       1.0 MiB
 glibc-gconv-extra                 x86_64 2.40-3.fc41                fedora       8.0 MiB
 gmp                               x86_64 1:6.3.0-2.fc41             fedora     811.4 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   fedora       1.0 KiB
 go-srpm-macros                    noarch 3.6.0-3.fc41               fedora      60.8 KiB
 jansson                           x86_64 2.13.1-10.fc41             fedora      88.3 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                fedora       1.9 KiB
 keyutils-libs                     x86_64 1.6.3-4.fc41               fedora      54.4 KiB
 krb5-libs                         x86_64 1.21.3-2.fc41              fedora       2.3 MiB
 libacl                            x86_64 2.3.2-2.fc41               fedora      40.0 KiB
 libarchive                        x86_64 3.7.4-3.fc41               fedora     922.6 KiB
 libattr                           x86_64 2.5.2-4.fc41               fedora      28.5 KiB
 libblkid                          x86_64 2.40.2-8.fc41              copr_base  262.5 KiB
 libbrotli                         x86_64 1.1.0-5.fc41               fedora     837.6 KiB
 libcap                            x86_64 2.70-4.fc41                fedora     220.2 KiB
 libcap-ng                         x86_64 0.8.5-3.fc41               fedora      69.2 KiB
 libcom_err                        x86_64 1.47.1-3.fc41              fedora      67.2 KiB
 libcurl                           x86_64 8.9.1-2.fc41               fedora     818.1 KiB
 libeconf                          x86_64 0.6.2-3.fc41               fedora      58.0 KiB
 libevent                          x86_64 2.1.12-14.fc41             fedora     895.7 KiB
 libfdisk                          x86_64 2.40.2-8.fc41              copr_base  362.9 KiB
 libffi                            x86_64 3.4.6-3.fc41               fedora      86.4 KiB
 libgcc                            x86_64 14.2.1-1.fc41              fedora     274.6 KiB
 libgomp                           x86_64 14.2.1-1.fc41              fedora     523.4 KiB
 libidn2                           x86_64 2.3.7-2.fc41               fedora     329.1 KiB
 libmount                          x86_64 2.40.2-8.fc41              copr_base  351.8 KiB
 libnghttp2                        x86_64 1.62.1-2.fc41              fedora     166.1 KiB
 libnsl2                           x86_64 2.0.1-2.fc41               fedora      57.9 KiB
 libpkgconf                        x86_64 2.3.0-1.fc41               fedora      78.2 KiB
 libpsl                            x86_64 0.21.5-4.fc41              fedora      80.5 KiB
 libpwquality                      x86_64 1.4.5-11.fc41              fedora     417.8 KiB
 libselinux                        x86_64 3.7-5.fc41                 fedora     181.0 KiB
 libsemanage                       x86_64 3.7-2.fc41                 fedora     293.5 KiB
 libsepol                          x86_64 3.7-2.fc41                 fedora     817.8 KiB
 libsmartcols                      x86_64 2.40.2-8.fc41              copr_base  180.4 KiB
 libssh                            x86_64 0.10.6-8.fc41              fedora     513.3 KiB
 libssh-config                     noarch 0.10.6-8.fc41              fedora     277.0   B
 libstdc++                         x86_64 14.2.1-1.fc41              fedora       2.8 MiB
 libtasn1                          x86_64 4.19.0-9.fc41              fedora     175.7 KiB
 libtirpc                          x86_64 1.3.5-0.fc41               fedora     202.7 KiB
 libtool-ltdl                      x86_64 2.4.7-12.fc41              fedora      66.2 KiB
 libunistring                      x86_64 1.1-8.fc41                 fedora       1.7 MiB
 libuuid                           x86_64 2.40.2-8.fc41              copr_base   41.4 KiB
 libverto                          x86_64 0.3.2-9.fc41               fedora      29.5 KiB
 libxcrypt                         x86_64 4.4.36-7.fc41              fedora     266.8 KiB
 libxml2                           x86_64 2.12.8-2.fc41              fedora       1.7 MiB
 libzstd                           x86_64 1.5.6-2.fc41               fedora     795.9 KiB
 lua-libs                          x86_64 5.4.6-6.fc41               fedora     285.0 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  fedora       1.3 KiB
 lz4-libs                          x86_64 1.10.0-1.fc41              fedora     145.5 KiB
 mpfr                              x86_64 4.2.1-5.fc41               fedora     832.1 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        fedora     326.3 KiB
 ncurses-libs                      x86_64 6.5-2.20240629.fc41        fedora     975.2 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  fedora     112.0   B
 openldap                          x86_64 2.6.8-5.fc41               fedora     644.2 KiB
 openssl-libs                      x86_64 1:3.2.2-5.fc41             fedora       7.8 MiB
 p11-kit                           x86_64 0.25.5-3.fc41              fedora       2.2 MiB
 p11-kit-trust                     x86_64 0.25.5-3.fc41              fedora     391.4 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                fedora       1.6 KiB
 pam                               x86_64 1.6.1-5.fc41               fedora       1.8 MiB
 pam-libs                          x86_64 1.6.1-5.fc41               fedora     139.0 KiB
 pcre2                             x86_64 10.44-1.fc41.1             fedora     653.5 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             fedora     251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  fedora     861.0   B
 pkgconf                           x86_64 2.3.0-1.fc41               fedora      88.6 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc41               fedora      14.4 KiB
 pkgconf-pkg-config                x86_64 2.3.0-1.fc41               fedora     989.0   B
 popt                              x86_64 1.19-7.fc41                fedora     136.9 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            fedora      67.5 KiB
 pyproject-srpm-macros             noarch 1.14.0-1.fc41              fedora       1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                fedora      51.0 KiB
 qt5-srpm-macros                   noarch 5.15.14-3.fc41             fedora     500.0   B
 qt6-srpm-macros                   noarch 6.7.2-3.fc41               fedora     456.0   B
 readline                          x86_64 8.2-10.fc41                fedora     493.2 KiB
 rpm                               x86_64 4.19.93-1.fc41             copr_base    3.1 MiB
 rpm-build-libs                    x86_64 4.19.93-1.fc41             copr_base  206.7 KiB
 rpm-libs                          x86_64 4.19.93-1.fc41             copr_base  721.9 KiB
 rpm-sequoia                       x86_64 1.7.0-2.fc41               fedora       2.4 MiB
 rust-srpm-macros                  noarch 26.3-3.fc41                copr_base    4.8 KiB
 setup                             noarch 2.15.0-5.fc41              fedora     720.7 KiB
 sqlite-libs                       x86_64 3.46.1-1.fc41              fedora       1.4 MiB
 systemd-libs                      x86_64 256.5-1.fc41               fedora       2.0 MiB
 util-linux-core                   x86_64 2.40.2-8.fc41              copr_base    1.5 MiB
 xxhash-libs                       x86_64 0.8.2-3.fc41               fedora      88.5 KiB
 xz-libs                           x86_64 1:5.6.2-2.fc41             fedora     214.4 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   fedora       1.1 KiB
 zip                               x86_64 3.0-41.fc41                fedora     703.2 KiB
 zlib-ng-compat                    x86_64 2.1.7-2.fc41               fedora     134.0 KiB
 zstd                              x86_64 1.5.6-2.fc41               fedora       1.7 MiB
Installing groups:
 Buildsystem building group                                                              

Transaction Summary:
 Installing:      152 packages

Total size of inbound packages is 53 MiB. Need to download 53 MiB.
After this operation 180 MiB will be used (install 180 MiB, remove 0 B).
[  1/152] bzip2-0:1.0.8-19.fc41.x86_64  100% |   5.7 MiB/s |  52.5 KiB |  00m00s
[  2/152] coreutils-0:9.5-9.fc41.x86_64 100% |  78.5 MiB/s |   1.1 MiB |  00m00s
[  3/152] cpio-0:2.15-2.fc41.x86_64     100% |  57.0 MiB/s | 291.8 KiB |  00m00s
[  4/152] bash-0:5.2.32-1.fc41.x86_64   100% | 112.9 MiB/s |   1.8 MiB |  00m00s
[  5/152] diffutils-0:3.10-8.fc41.x86_6 100% | 132.0 MiB/s | 405.4 KiB |  00m00s
[  6/152] fedora-release-common-0:41-0. 100% |  11.1 MiB/s |  22.8 KiB |  00m00s
[  7/152] glibc-minimal-langpack-0:2.40 100% |  60.6 MiB/s | 124.0 KiB |  00m00s
[  8/152] grep-0:3.11-9.fc41.x86_64     100% | 146.4 MiB/s | 299.7 KiB |  00m00s
[  9/152] findutils-1:4.10.0-4.fc41.x86 100% | 107.1 MiB/s | 548.5 KiB |  00m00s
[ 10/152] gzip-0:1.13-2.fc41.x86_64     100% |  41.6 MiB/s | 170.2 KiB |  00m00s
[ 11/152] patch-0:2.7.6-25.fc41.x86_64  100% |  42.6 MiB/s | 131.0 KiB |  00m00s
[ 12/152] info-0:7.1-3.fc41.x86_64      100% |  44.6 MiB/s | 182.5 KiB |  00m00s
[ 13/152] redhat-rpm-config-0:293-1.fc4 100% |  40.1 MiB/s |  82.0 KiB |  00m00s
[ 14/152] sed-0:4.9-3.fc41.x86_64       100% | 103.4 MiB/s | 317.7 KiB |  00m00s
[ 15/152] unzip-0:6.0-64.fc41.x86_64    100% |  45.2 MiB/s | 184.9 KiB |  00m00s
[ 16/152] shadow-utils-2:4.15.1-9.fc41. 100% | 146.9 MiB/s |   1.3 MiB |  00m00s
[ 17/152] tar-2:1.35-4.fc41.x86_64      100% | 105.1 MiB/s | 860.7 KiB |  00m00s
[ 18/152] which-0:2.21-42.fc41.x86_64   100% |  13.5 MiB/s |  41.6 KiB |  00m00s
[ 19/152] xz-1:5.6.2-2.fc41.x86_64      100% | 115.1 MiB/s | 471.5 KiB |  00m00s
[ 20/152] gawk-0:5.3.0-4.fc41.x86_64    100% | 214.3 MiB/s |   1.1 MiB |  00m00s
[ 21/152] rpm-build-0:4.19.93-1.fc41.x8 100% |   8.3 MiB/s |  76.1 KiB |  00m00s
[ 22/152] filesystem-0:3.18-23.fc41.x86 100% | 181.1 MiB/s |   1.1 MiB |  00m00s
[ 23/152] ncurses-libs-0:6.5-2.20240629 100% | 163.1 MiB/s | 334.0 KiB |  00m00s
[ 24/152] glibc-0:2.40-3.fc41.x86_64    100% | 248.6 MiB/s |   2.2 MiB |  00m00s
[ 25/152] bzip2-libs-0:1.0.8-19.fc41.x8 100% |  10.0 MiB/s |  41.1 KiB |  00m00s
[ 26/152] util-linux-0:2.40.2-8.fc41.x8 100% |  58.9 MiB/s |   1.1 MiB |  00m00s
[ 27/152] libacl-0:2.3.2-2.fc41.x86_64  100% |  12.0 MiB/s |  24.5 KiB |  00m00s
[ 28/152] libattr-0:2.5.2-4.fc41.x86_64 100% |   3.0 MiB/s |  18.2 KiB |  00m00s
[ 29/152] libcap-0:2.70-4.fc41.x86_64   100% |   9.4 MiB/s |  86.7 KiB |  00m00s
[ 30/152] fedora-repos-0:41-0.4.noarch  100% |   1.5 MiB/s |   9.2 KiB |  00m00s
[ 31/152] coreutils-common-0:9.5-9.fc41 100% |  92.2 MiB/s |   2.1 MiB |  00m00s
[ 32/152] glibc-common-0:2.40-3.fc41.x8 100% |  80.5 MiB/s | 412.3 KiB |  00m00s
[ 33/152] openssl-libs-1:3.2.2-5.fc41.x 100% | 121.6 MiB/s |   2.3 MiB |  00m00s
[ 34/152] pcre2-0:10.44-1.fc41.1.x86_64 100% |  47.5 MiB/s | 243.1 KiB |  00m00s
[ 35/152] ed-0:1.20.2-2.fc41.x86_64     100% |  13.3 MiB/s |  81.8 KiB |  00m00s
[ 36/152] ansible-srpm-macros-0:1-16.fc 100% |   6.8 MiB/s |  20.8 KiB |  00m00s
[ 37/152] build-reproducibility-srpm-ma 100% |   3.5 MiB/s |  10.6 KiB |  00m00s
[ 38/152] dwz-0:0.15-7.fc41.x86_64      100% |  67.4 MiB/s | 138.0 KiB |  00m00s
[ 39/152] efi-srpm-macros-0:5-12.fc41.n 100% |   7.3 MiB/s |  22.4 KiB |  00m00s
[ 40/152] fonts-srpm-macros-1:2.0.5-17. 100% |   8.8 MiB/s |  27.0 KiB |  00m00s
[ 41/152] fpc-srpm-macros-0:1.3-13.fc41 100% |   3.9 MiB/s |   8.0 KiB |  00m00s
[ 42/152] forge-srpm-macros-0:0.3.2-1.f 100% |   3.8 MiB/s |  19.7 KiB |  00m00s
[ 43/152] ghc-srpm-macros-0:1.9.1-2.fc4 100% |   1.8 MiB/s |   9.1 KiB |  00m00s
[ 44/152] gnat-srpm-macros-0:6-6.fc41.n 100% |   1.5 MiB/s |   9.0 KiB |  00m00s
[ 45/152] kernel-srpm-macros-0:1.0-24.f 100% |   1.2 MiB/s |   9.9 KiB |  00m00s
[ 46/152] lua-srpm-macros-0:1-14.fc41.n 100% |   1.2 MiB/s |   8.9 KiB |  00m00s
[ 47/152] go-srpm-macros-0:3.6.0-3.fc41 100% |   2.5 MiB/s |  28.0 KiB |  00m00s
[ 48/152] ocaml-srpm-macros-0:10-3.fc41 100% |   1.8 MiB/s |   9.2 KiB |  00m00s
[ 49/152] openblas-srpm-macros-0:2-18.f 100% |   1.5 MiB/s |   7.7 KiB |  00m00s
[ 50/152] package-notes-srpm-macros-0:0 100% |   2.4 MiB/s |   9.8 KiB |  00m00s
[ 51/152] perl-srpm-macros-0:1-56.fc41. 100% |   8.3 MiB/s |   8.5 KiB |  00m00s
[ 52/152] pyproject-srpm-macros-0:1.14. 100% |  13.1 MiB/s |  13.4 KiB |  00m00s
[ 53/152] python-srpm-macros-0:3.13-3.f 100% |  23.2 MiB/s |  23.7 KiB |  00m00s
[ 54/152] qt5-srpm-macros-0:5.15.14-3.f 100% |   8.8 MiB/s |   9.0 KiB |  00m00s
[ 55/152] qt6-srpm-macros-0:6.7.2-3.fc4 100% |   8.9 MiB/s |   9.1 KiB |  00m00s
[ 56/152] zig-srpm-macros-0:1-3.fc41.no 100% |   7.9 MiB/s |   8.1 KiB |  00m00s
[ 57/152] libeconf-0:0.6.2-3.fc41.x86_6 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[ 58/152] zip-0:3.0-41.fc41.x86_64      100% | 129.3 MiB/s | 264.8 KiB |  00m00s
[ 59/152] libxcrypt-0:4.4.36-7.fc41.x86 100% |  57.9 MiB/s | 118.5 KiB |  00m00s
[ 60/152] pam-libs-0:1.6.1-5.fc41.x86_6 100% |  56.0 MiB/s |  57.3 KiB |  00m00s
[ 61/152] setup-0:2.15.0-5.fc41.noarch  100% |  75.4 MiB/s | 154.4 KiB |  00m00s
[ 62/152] xz-libs-1:5.6.2-2.fc41.x86_64 100% |  54.6 MiB/s | 111.8 KiB |  00m00s
[ 63/152] mpfr-0:4.2.1-5.fc41.x86_64    100% | 169.1 MiB/s | 346.3 KiB |  00m00s
[ 64/152] readline-0:8.2-10.fc41.x86_64 100% | 104.1 MiB/s | 213.2 KiB |  00m00s
[ 65/152] debugedit-0:5.0-17.fc41.x86_6 100% |  26.1 MiB/s |  80.1 KiB |  00m00s
[ 66/152] elfutils-0:0.191-8.fc41.x86_6 100% | 172.3 MiB/s | 529.4 KiB |  00m00s
[ 67/152] elfutils-libelf-0:0.191-8.fc4 100% | 101.4 MiB/s | 207.6 KiB |  00m00s
[ 68/152] libarchive-0:3.7.4-3.fc41.x86 100% |  99.9 MiB/s | 409.2 KiB |  00m00s
[ 69/152] popt-0:1.19-7.fc41.x86_64     100% |  32.2 MiB/s |  65.9 KiB |  00m00s
[ 70/152] zstd-0:1.5.6-2.fc41.x86_64    100% | 156.7 MiB/s | 481.5 KiB |  00m00s
[ 71/152] zlib-ng-compat-0:2.1.7-2.fc41 100% |  38.0 MiB/s |  77.8 KiB |  00m00s
[ 72/152] systemd-libs-0:256.5-1.fc41.x 100% | 142.6 MiB/s | 730.2 KiB |  00m00s
[ 73/152] rpm-0:4.19.93-1.fc41.x86_64   100% |  56.7 MiB/s | 522.7 KiB |  00m00s
[ 74/152] libblkid-0:2.40.2-8.fc41.x86_ 100% |  20.4 MiB/s | 125.5 KiB |  00m00s
[ 75/152] libfdisk-0:2.40.2-8.fc41.x86_ 100% |  39.0 MiB/s | 159.9 KiB |  00m00s
[ 76/152] libmount-0:2.40.2-8.fc41.x86_ 100% |  50.9 MiB/s | 156.2 KiB |  00m00s
[ 77/152] libsmartcols-0:2.40.2-8.fc41. 100% |  27.5 MiB/s |  84.4 KiB |  00m00s
[ 78/152] libuuid-0:2.40.2-8.fc41.x86_6 100% |   7.2 MiB/s |  29.5 KiB |  00m00s
[ 79/152] basesystem-0:11-21.fc41.noarc 100% |   7.2 MiB/s |   7.4 KiB |  00m00s
[ 80/152] util-linux-core-0:2.40.2-8.fc 100% | 127.3 MiB/s | 521.5 KiB |  00m00s
[ 81/152] libgcc-0:14.2.1-1.fc41.x86_64 100% |  64.6 MiB/s | 132.3 KiB |  00m00s
[ 82/152] glibc-gconv-extra-0:2.40-3.fc 100% | 241.8 MiB/s |   1.7 MiB |  00m00s
[ 83/152] ncurses-base-0:6.5-2.20240629 100% |  28.7 MiB/s |  88.3 KiB |  00m00s
[ 84/152] ca-certificates-0:2024.2.68_v 100% | 169.6 MiB/s | 868.2 KiB |  00m00s
[ 85/152] crypto-policies-0:20240826-1. 100% |  23.1 MiB/s |  94.5 KiB |  00m00s
[ 86/152] fedora-gpg-keys-0:41-0.4.noar 100% |  32.6 MiB/s | 133.6 KiB |  00m00s
[ 87/152] pcre2-syntax-0:10.44-1.fc41.1 100% |  48.8 MiB/s | 149.9 KiB |  00m00s
[ 88/152] elfutils-libs-0:0.191-8.fc41. 100% |  62.9 MiB/s | 257.5 KiB |  00m00s
[ 89/152] elfutils-debuginfod-client-0: 100% |  12.1 MiB/s |  37.2 KiB |  00m00s
[ 90/152] add-determinism-0:0.3.6-1.fc4 100% | 118.8 MiB/s | 851.8 KiB |  00m00s
[ 91/152] lz4-libs-0:1.10.0-1.fc41.x86_ 100% |  23.0 MiB/s |  70.7 KiB |  00m00s
[ 92/152] curl-0:8.9.1-2.fc41.x86_64    100% | 153.9 MiB/s | 315.1 KiB |  00m00s
[ 93/152] libzstd-0:1.5.6-2.fc41.x86_64 100% |   6.6 MiB/s | 310.3 KiB |  00m00s
[ 94/152] elfutils-default-yama-scope-0 100% | 323.8 KiB/s |  12.3 KiB |  00m00s
[ 95/152] libstdc++-0:14.2.1-1.fc41.x86 100% |  17.3 MiB/s | 886.5 KiB |  00m00s
[ 96/152] lua-libs-0:5.4.6-6.fc41.x86_6 100% |  43.0 MiB/s | 132.0 KiB |  00m00s
[ 97/152] rpm-libs-0:4.19.93-1.fc41.x86 100% |  75.7 MiB/s | 310.0 KiB |  00m00s
[ 98/152] rpm-build-libs-0:4.19.93-1.fc 100% |  48.7 MiB/s |  99.8 KiB |  00m00s
[ 99/152] sqlite-libs-0:3.46.1-1.fc41.x 100% | 139.2 MiB/s | 712.7 KiB |  00m00s
[100/152] rpm-sequoia-0:1.7.0-2.fc41.x8 100% | 145.3 MiB/s | 892.5 KiB |  00m00s
[101/152] libgomp-0:14.2.1-1.fc41.x86_6 100% | 114.9 MiB/s | 353.0 KiB |  00m00s
[102/152] libselinux-0:3.7-5.fc41.x86_6 100% |  42.9 MiB/s |  87.8 KiB |  00m00s
[103/152] libsepol-0:3.7-2.fc41.x86_64  100% | 111.4 MiB/s | 342.2 KiB |  00m00s
[104/152] audit-libs-0:4.0.2-1.fc41.x86 100% |  41.2 MiB/s | 126.7 KiB |  00m00s
[105/152] authselect-libs-0:1.5.0-7.fc4 100% | 106.5 MiB/s | 218.1 KiB |  00m00s
[106/152] libcap-ng-0:0.8.5-3.fc41.x86_ 100% |  31.8 MiB/s |  32.6 KiB |  00m00s
[107/152] authselect-0:1.5.0-7.fc41.x86 100% |  71.1 MiB/s | 145.7 KiB |  00m00s
[108/152] gdbm-libs-1:1.23-7.fc41.x86_6 100% |  27.5 MiB/s |  56.3 KiB |  00m00s
[109/152] libnsl2-0:2.0.1-2.fc41.x86_64 100% |  28.9 MiB/s |  29.6 KiB |  00m00s
[110/152] pam-0:1.6.1-5.fc41.x86_64     100% | 108.2 MiB/s | 554.0 KiB |  00m00s
[111/152] libtirpc-0:1.3.5-0.fc41.x86_6 100% |  30.6 MiB/s |  94.2 KiB |  00m00s
[112/152] libcom_err-0:1.47.1-3.fc41.x8 100% |  25.8 MiB/s |  26.4 KiB |  00m00s
[113/152] krb5-libs-0:1.21.3-2.fc41.x86 100% | 184.9 MiB/s | 757.4 KiB |  00m00s
[114/152] keyutils-libs-0:1.6.3-4.fc41. 100% |  15.5 MiB/s |  31.6 KiB |  00m00s
[115/152] libverto-0:0.3.2-9.fc41.x86_6 100% |   6.7 MiB/s |  20.7 KiB |  00m00s
[116/152] file-0:5.45-7.fc41.x86_64     100% |  24.0 MiB/s |  49.1 KiB |  00m00s
[117/152] file-libs-0:5.45-7.fc41.x86_6 100% | 248.0 MiB/s | 762.0 KiB |  00m00s
[118/152] alternatives-0:1.30-1.fc41.x8 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[119/152] pkgconf-pkg-config-0:2.3.0-1. 100% |   9.8 MiB/s |  10.0 KiB |  00m00s
[120/152] jansson-0:2.13.1-10.fc41.x86_ 100% |  14.5 MiB/s |  44.4 KiB |  00m00s
[121/152] pkgconf-0:2.3.0-1.fc41.x86_64 100% |  22.1 MiB/s |  45.2 KiB |  00m00s
[122/152] pkgconf-m4-0:2.3.0-1.fc41.noa 100% |   4.7 MiB/s |  14.3 KiB |  00m00s
[123/152] libsemanage-0:3.7-2.fc41.x86_ 100% |  37.9 MiB/s | 116.3 KiB |  00m00s
[124/152] libpkgconf-0:2.3.0-1.fc41.x86 100% |   9.4 MiB/s |  38.5 KiB |  00m00s
[125/152] rust-srpm-macros-0:26.3-3.fc4 100% |   6.2 MiB/s |  12.7 KiB |  00m00s
[126/152] gdbm-1:1.23-7.fc41.x86_64     100% |  74.1 MiB/s | 151.8 KiB |  00m00s
[127/152] cracklib-0:2.9.11-6.fc41.x86_ 100% |  30.0 MiB/s |  92.1 KiB |  00m00s
[128/152] binutils-0:2.43-3.fc41.x86_64 100% | 268.8 MiB/s |   6.5 MiB |  00m00s
[129/152] libxml2-0:2.12.8-2.fc41.x86_6 100% | 111.9 MiB/s | 687.3 KiB |  00m00s
[130/152] libpwquality-0:1.4.5-11.fc41. 100% |  10.6 MiB/s | 119.0 KiB |  00m00s
[131/152] p11-kit-0:0.25.5-3.fc41.x86_6 100% | 159.8 MiB/s | 490.9 KiB |  00m00s
[132/152] libffi-0:3.4.6-3.fc41.x86_64  100% |  13.0 MiB/s |  39.9 KiB |  00m00s
[133/152] libtasn1-0:4.19.0-9.fc41.x86_ 100% |  18.1 MiB/s |  74.2 KiB |  00m00s
[134/152] p11-kit-trust-0:0.25.5-3.fc41 100% |  43.0 MiB/s | 132.1 KiB |  00m00s
[135/152] xxhash-libs-0:0.8.2-3.fc41.x8 100% |  18.1 MiB/s |  37.1 KiB |  00m00s
[136/152] fedora-release-0:41-0.21.noar 100% |   5.9 MiB/s |  12.1 KiB |  00m00s
[137/152] fedora-release-identity-basic 100% |   6.3 MiB/s |  12.8 KiB |  00m00s
[138/152] gmp-1:6.3.0-2.fc41.x86_64     100% | 103.5 MiB/s | 318.0 KiB |  00m00s
[139/152] libcurl-0:8.9.1-2.fc41.x86_64 100% | 117.8 MiB/s | 361.9 KiB |  00m00s
[140/152] libidn2-0:2.3.7-2.fc41.x86_64 100% |  23.1 MiB/s | 118.4 KiB |  00m00s
[141/152] libnghttp2-0:1.62.1-2.fc41.x8 100% |  25.0 MiB/s |  76.6 KiB |  00m00s
[142/152] gdb-minimal-0:15.1-1.fc41.x86 100% | 239.6 MiB/s |   4.3 MiB |  00m00s
[143/152] libpsl-0:0.21.5-4.fc41.x86_64 100% |  12.5 MiB/s |  64.1 KiB |  00m00s
[144/152] libssh-0:0.10.6-8.fc41.x86_64 100% |  41.4 MiB/s | 211.8 KiB |  00m00s
[145/152] openldap-0:2.6.8-5.fc41.x86_6 100% | 124.8 MiB/s | 255.6 KiB |  00m00s
[146/152] publicsuffix-list-dafsa-0:202 100% |  28.5 MiB/s |  58.3 KiB |  00m00s
[147/152] libunistring-0:1.1-8.fc41.x86 100% | 133.0 MiB/s | 544.8 KiB |  00m00s
[148/152] libssh-config-0:0.10.6-8.fc41 100% |   3.0 MiB/s |   9.2 KiB |  00m00s
[149/152] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 129.4 MiB/s | 794.9 KiB |  00m00s
[150/152] libtool-ltdl-0:2.4.7-12.fc41. 100% |   8.7 MiB/s |  35.6 KiB |  00m00s
[151/152] libevent-0:2.1.12-14.fc41.x86 100% |  41.9 MiB/s | 257.5 KiB |  00m00s
[152/152] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 166.2 MiB/s | 340.5 KiB |  00m00s
--------------------------------------------------------------------------------
[152/152] Total                         100% | 162.8 MiB/s |  53.1 MiB |  00m00s
Running transaction
Importing PGP key 0xE99D6AD1:
 Userid     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
[  1/154] Verify package files          100% | 955.0   B/s | 152.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
[  2/154] Prepare transaction           100% |   4.8 KiB/s | 152.0   B |  00m00s
[  3/154] Installing libgcc-0:14.2.1-1. 100% | 269.8 MiB/s | 276.3 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc41.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc41.x86_64
[  4/154] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  5/154] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[  6/154] Installing fedora-release-ide 100% |   0.0   B/s | 940.0   B |  00m00s
[  7/154] Installing fedora-gpg-keys-0: 100% |  56.1 MiB/s | 172.2 KiB |  00m00s
[  8/154] Installing fedora-repos-0:41- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/154] Installing fedora-release-com 100% |  23.1 MiB/s |  23.7 KiB |  00m00s
[ 10/154] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 11/154] Installing setup-0:2.15.0-5.f 100% |  64.5 MiB/s | 726.1 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
>>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
[ 12/154] Installing filesystem-0:3.18- 100% |   3.8 MiB/s | 212.5 KiB |  00m00s
[ 13/154] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 14/154] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[ 15/154] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 16/154] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB |  00m00s
[ 17/154] Installing ncurses-base-0:6.5 100% | 114.5 MiB/s | 351.7 KiB |  00m00s
[ 18/154] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/154] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 20/154] Installing glibc-0:2.40-3.fc4 100% | 256.8 MiB/s |   6.7 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.40-3.fc41.x86_64
>>> Stop post-install scriptlet: glibc-0:2.40-3.fc41.x86_64
[ 21/154] Installing bash-0:5.2.32-1.fc 100% | 453.8 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.32-1.fc41.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.32-1.fc41.x86_64
[ 22/154] Installing glibc-common-0:2.4 100% | 209.4 MiB/s |   1.0 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 23/154] Installing glibc-gconv-extra- 100% | 300.0 MiB/s |   8.1 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.x86_64
[ 24/154] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB |  00m00s
[ 25/154] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  81.8 KiB |  00m00s
[ 26/154] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB |  00m00s
[ 27/154] Installing readline-0:8.2-10. 100% | 483.7 MiB/s | 495.3 KiB |  00m00s
[ 28/154] Installing popt-0:1.19-7.fc41 100% |  70.1 MiB/s | 143.5 KiB |  00m00s
[ 29/154] Installing libuuid-0:2.40.2-8 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[ 30/154] Installing libblkid-0:2.40.2- 100% | 257.5 MiB/s | 263.6 KiB |  00m00s
[ 31/154] Installing libattr-0:2.5.2-4. 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 32/154] Installing libacl-0:2.3.2-2.f 100% |   0.0   B/s |  40.7 KiB |  00m00s
[ 33/154] Installing libxcrypt-0:4.4.36 100% | 263.2 MiB/s | 269.5 KiB |  00m00s
[ 34/154] Installing libstdc++-0:14.2.1 100% | 395.8 MiB/s |   2.8 MiB |  00m00s
[ 35/154] Installing libzstd-0:1.5.6-2. 100% | 389.3 MiB/s | 797.2 KiB |  00m00s
[ 36/154] Installing elfutils-libelf-0: 100% | 584.6 MiB/s |   1.2 MiB |  00m00s
[ 37/154] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB |  00m00s
[ 38/154] Installing libeconf-0:0.6.2-3 100% |   0.0   B/s |  59.7 KiB |  00m00s
[ 39/154] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 40/154] Installing mpfr-0:4.2.1-5.fc4 100% | 407.1 MiB/s | 833.7 KiB |  00m00s
[ 41/154] Installing gawk-0:5.3.0-4.fc4 100% | 346.4 MiB/s |   1.7 MiB |  00m00s
[ 42/154] Installing dwz-0:0.15-7.fc41. 100% | 285.5 MiB/s | 292.3 KiB |  00m00s
[ 43/154] Installing unzip-0:6.0-64.fc4 100% | 381.1 MiB/s | 390.3 KiB |  00m00s
[ 44/154] Installing file-libs-0:5.45-7 100% | 764.2 MiB/s |   9.9 MiB |  00m00s
[ 45/154] Installing file-0:5.45-7.fc41 100% |  20.5 MiB/s | 105.0 KiB |  00m00s
>>> Running pre-install scriptlet: crypto-policies-0:20240826-1.gite824389.fc41.
>>> Stop pre-install scriptlet: crypto-policies-0:20240826-1.gite824389.fc41.noa
[ 46/154] Installing crypto-policies-0: 100% |  39.8 MiB/s | 163.2 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240826-1.gite824389.fc41
>>> Stop post-install scriptlet: crypto-policies-0:20240826-1.gite824389.fc41.no
[ 47/154] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB |  00m00s
[ 48/154] Installing grep-0:3.11-9.fc41 100% | 250.8 MiB/s |   1.0 MiB |  00m00s
[ 49/154] Installing xz-1:5.6.2-2.fc41. 100% | 301.2 MiB/s |   1.2 MiB |  00m00s
[ 50/154] Installing libsmartcols-0:2.4 100% | 177.2 MiB/s | 181.5 KiB |  00m00s
[ 51/154] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB |  00m00s
[ 52/154] Installing lua-libs-0:5.4.6-6 100% | 279.5 MiB/s | 286.2 KiB |  00m00s
[ 53/154] Installing libsepol-0:3.7-2.f 100% | 399.8 MiB/s | 818.8 KiB |  00m00s
[ 54/154] Installing libselinux-0:3.7-5 100% | 178.0 MiB/s | 182.3 KiB |  00m00s
[ 55/154] Installing sed-0:4.9-3.fc41.x 100% | 283.1 MiB/s | 869.7 KiB |  00m00s
[ 56/154] Installing findutils-1:4.10.0 100% | 371.6 MiB/s |   1.9 MiB |  00m00s
[ 57/154] Installing libmount-0:2.40.2- 100% | 344.7 MiB/s | 352.9 KiB |  00m00s
[ 58/154] Installing libcap-ng-0:0.8.5- 100% |   0.0   B/s |  71.0 KiB |  00m00s
[ 59/154] Installing audit-libs-0:4.0.2 100% | 325.6 MiB/s | 333.4 KiB |  00m00s
[ 60/154] Installing pam-libs-0:1.6.1-5 100% | 138.1 MiB/s | 141.4 KiB |  00m00s
[ 61/154] Installing libcap-0:2.70-4.fc 100% | 220.0 MiB/s | 225.2 KiB |  00m00s
[ 62/154] Installing systemd-libs-0:256 100% | 405.9 MiB/s |   2.0 MiB |  00m00s
[ 63/154] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 64/154] Installing alternatives-0:1.3 100% |   0.0   B/s |  67.9 KiB |  00m00s
[ 65/154] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB |  00m00s
[ 66/154] Installing libunistring-0:1.1 100% | 432.7 MiB/s |   1.7 MiB |  00m00s
[ 67/154] Installing libidn2-0:2.3.7-2. 100% | 163.6 MiB/s | 335.1 KiB |  00m00s
[ 68/154] Installing libpsl-0:0.21.5-4. 100% |  79.7 MiB/s |  81.7 KiB |  00m00s
[ 69/154] Installing util-linux-core-0: 100% | 304.1 MiB/s |   1.5 MiB |  00m00s
[ 70/154] Installing libsemanage-0:3.7- 100% | 144.2 MiB/s | 295.2 KiB |  00m00s
[ 71/154] Installing shadow-utils-2:4.1 100% | 279.6 MiB/s |   4.2 MiB |  00m00s
[ 72/154] Installing tar-2:1.35-4.fc41. 100% | 422.6 MiB/s |   3.0 MiB |  00m00s
[ 73/154] Installing zstd-0:1.5.6-2.fc4 100% | 422.9 MiB/s |   1.7 MiB |  00m00s
[ 74/154] Installing zip-0:3.0-41.fc41. 100% | 345.2 MiB/s | 707.1 KiB |  00m00s
[ 75/154] Installing gdbm-1:1.23-7.fc41 100% | 227.4 MiB/s | 465.8 KiB |  00m00s
[ 76/154] Installing cyrus-sasl-lib-0:2 100% | 461.2 MiB/s |   2.3 MiB |  00m00s
[ 77/154] Installing libfdisk-0:2.40.2- 100% | 355.3 MiB/s | 363.9 KiB |  00m00s
[ 78/154] Installing libxml2-0:2.12.8-2 100% | 428.0 MiB/s |   1.7 MiB |  00m00s
[ 79/154] Installing bzip2-0:1.0.8-19.f 100% |  97.8 MiB/s | 100.2 KiB |  00m00s
[ 80/154] Installing add-determinism-0: 100% | 449.2 MiB/s |   2.2 MiB |  00m00s
[ 81/154] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 82/154] Installing sqlite-libs-0:3.46 100% | 357.3 MiB/s |   1.4 MiB |  00m00s
[ 83/154] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB |  00m00s
[ 84/154] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB |  00m00s
[ 85/154] Installing elfutils-default-y 100% | 681.0 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar
[ 86/154] Installing elfutils-libs-0:0. 100% | 316.4 MiB/s | 648.0 KiB |  00m00s
[ 87/154] Installing cpio-0:2.15-2.fc41 100% | 274.9 MiB/s |   1.1 MiB |  00m00s
[ 88/154] Installing diffutils-0:3.10-8 100% | 318.1 MiB/s |   1.6 MiB |  00m00s
[ 89/154] Installing libgomp-0:14.2.1-1 100% | 512.5 MiB/s | 524.8 KiB |  00m00s
[ 90/154] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  55.8 KiB |  00m00s
[ 91/154] Installing libverto-0:0.3.2-9 100% |   0.0   B/s |  31.3 KiB |  00m00s
[ 92/154] Installing jansson-0:2.13.1-1 100% |   0.0   B/s |  89.7 KiB |  00m00s
[ 93/154] Installing libpkgconf-0:2.3.0 100% |   0.0   B/s |  79.3 KiB |  00m00s
[ 94/154] Installing pkgconf-0:2.3.0-1. 100% |  89.0 MiB/s |  91.1 KiB |  00m00s
[ 95/154] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[ 96/154] Installing libffi-0:3.4.6-3.f 100% |  85.7 MiB/s |  87.8 KiB |  00m00s
[ 97/154] Installing p11-kit-0:0.25.5-3 100% | 315.3 MiB/s |   2.2 MiB |  00m00s
[ 98/154] Installing p11-kit-trust-0:0. 100% |  76.8 MiB/s | 393.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64
[ 99/154] Installing xxhash-libs-0:0.8. 100% |  87.8 MiB/s |  89.9 KiB |  00m00s
[100/154] Installing libnghttp2-0:1.62. 100% | 163.2 MiB/s | 167.1 KiB |  00m00s
[101/154] Installing libtool-ltdl-0:2.4 100% |   0.0   B/s |  67.3 KiB |  00m00s
[102/154] Installing libbrotli-0:1.1.0- 100% | 410.1 MiB/s | 839.9 KiB |  00m00s
[103/154] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[104/154] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[105/154] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[106/154] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[107/154] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[108/154] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[109/154] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[110/154] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[111/154] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[112/154] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[113/154] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[114/154] Installing coreutils-common-0 100% | 466.3 MiB/s |  11.2 MiB |  00m00s
[115/154] Installing openssl-libs-1:3.2 100% | 460.3 MiB/s |   7.8 MiB |  00m00s
[116/154] Installing coreutils-0:9.5-9. 100% | 353.8 MiB/s |   5.7 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n
>>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar
[117/154] Installing ca-certificates-0: 100% |   4.5 MiB/s |   2.4 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.
>>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa
[118/154] Installing krb5-libs-0:1.21.3 100% | 328.5 MiB/s |   2.3 MiB |  00m00s
[119/154] Installing libarchive-0:3.7.4 100% | 451.5 MiB/s | 924.6 KiB |  00m00s
[120/154] Installing libtirpc-0:1.3.5-0 100% | 199.7 MiB/s | 204.5 KiB |  00m00s
[121/154] Installing gzip-0:1.13-2.fc41 100% | 192.7 MiB/s | 394.6 KiB |  00m00s
[122/154] Installing authselect-libs-0: 100% | 203.4 MiB/s | 833.2 KiB |  00m00s
[123/154] Installing cracklib-0:2.9.11- 100% |  81.5 MiB/s | 250.3 KiB |  00m00s
[124/154] Installing libpwquality-0:1.4 100% | 140.0 MiB/s | 430.1 KiB |  00m00s
[125/154] Installing libnsl2-0:2.0.1-2. 100% |  57.7 MiB/s |  59.1 KiB |  00m00s
[126/154] Installing pam-0:1.6.1-5.fc41 100% | 187.7 MiB/s |   1.9 MiB |  00m00s
[127/154] Installing libssh-0:0.10.6-8. 100% | 251.7 MiB/s | 515.4 KiB |  00m00s
[128/154] Installing rpm-sequoia-0:1.7. 100% | 394.5 MiB/s |   2.4 MiB |  00m00s
[129/154] Installing rpm-libs-0:4.19.93 100% | 353.2 MiB/s | 723.4 KiB |  00m00s
[130/154] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB |  00m00s
[131/154] Installing libevent-0:2.1.12- 100% | 439.2 MiB/s | 899.5 KiB |  00m00s
[132/154] Installing openldap-0:2.6.8-5 100% | 316.4 MiB/s | 648.0 KiB |  00m00s
[133/154] Installing libcurl-0:8.9.1-2. 100% | 400.0 MiB/s | 819.2 KiB |  00m00s
[134/154] Installing elfutils-debuginfo 100% |  65.3 MiB/s |  66.9 KiB |  00m00s
[135/154] Installing elfutils-0:0.191-8 100% | 426.7 MiB/s |   2.6 MiB |  00m00s
[136/154] Installing binutils-0:2.43-3. 100% | 459.3 MiB/s |  27.6 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.43-3.fc41.x86_64
>>> Stop post-install scriptlet: binutils-0:2.43-3.fc41.x86_64
[137/154] Installing gdb-minimal-0:15.1 100% | 448.0 MiB/s |  13.0 MiB |  00m00s
[138/154] Installing debugedit-0:5.0-17 100% | 197.3 MiB/s | 202.0 KiB |  00m00s
[139/154] Installing curl-0:8.9.1-2.fc4 100% |  97.5 MiB/s | 798.6 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc41.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc41.x86_64
[140/154] Installing rpm-0:4.19.93-1.fc 100% | 208.1 MiB/s |   2.5 MiB |  00m00s
[141/154] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[142/154] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[143/154] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[144/154] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[145/154] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.4 KiB |  00m00s
[146/154] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  62.0 KiB |  00m00s
[147/154] Installing python-srpm-macros 100% |   0.0   B/s |  52.2 KiB |  00m00s
[148/154] Installing redhat-rpm-config- 100% | 185.6 MiB/s | 190.1 KiB |  00m00s
[149/154] Installing rpm-build-0:4.19.9 100% |  99.0 MiB/s | 202.7 KiB |  00m00s
[150/154] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[151/154] Installing util-linux-0:2.40. 100% | 216.7 MiB/s |   3.7 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc41.x86_64
>>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc41.x86_64
[152/154] Installing authselect-0:1.5.0 100% | 154.2 MiB/s | 157.9 KiB |  00m00s
[153/154] Installing which-0:2.21-42.fc 100% |  80.5 MiB/s |  82.4 KiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[154/154] Installing info-0:7.1-3.fc41. 100% | 508.0 KiB/s | 362.2 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc41.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc41.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
Warning: skipped PGP checks for 13 packages from repository: copr_base
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-1.fc41.x86_64
alternatives-1.30-1.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.x86_64
authselect-1.5.0-7.fc41.x86_64
authselect-libs-1.5.0-7.fc41.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.32-1.fc41.x86_64
binutils-2.43-3.fc41.x86_64
build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch
coreutils-9.5-9.fc41.x86_64
coreutils-common-9.5-9.fc41.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20240826-1.gite824389.fc41.noarch
curl-8.9.1-2.fc41.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.0-17.fc41.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-7.fc41.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.x86_64
elfutils-debuginfod-client-0.191-8.fc41.x86_64
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.x86_64
elfutils-libs-0.191-8.fc41.x86_64
fedora-gpg-keys-41-0.4.noarch
fedora-release-41-0.21.noarch
fedora-release-common-41-0.21.noarch
fedora-release-identity-basic-41-0.21.noarch
fedora-repos-41-0.4.noarch
file-5.45-7.fc41.x86_64
file-libs-5.45-7.fc41.x86_64
filesystem-3.18-23.fc41.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.2-1.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.1-1.fc41.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.40-3.fc41.x86_64
glibc-common-2.40-3.fc41.x86_64
glibc-gconv-extra-2.40-3.fc41.x86_64
glibc-minimal-langpack-2.40-3.fc41.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1-3.fc41.x86_64
jansson-2.13.1-10.fc41.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-2.fc41.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.4-3.fc41.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc41.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.70-4.fc41.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-3.fc41.x86_64
libcurl-8.9.1-2.fc41.x86_64
libeconf-0.6.2-3.fc41.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-8.fc41.x86_64
libffi-3.4.6-3.fc41.x86_64
libgcc-14.2.1-1.fc41.x86_64
libgomp-14.2.1-1.fc41.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-8.fc41.x86_64
libnghttp2-1.62.1-2.fc41.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc41.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.7-5.fc41.x86_64
libsemanage-3.7-2.fc41.x86_64
libsepol-3.7-2.fc41.x86_64
libsmartcols-2.40.2-8.fc41.x86_64
libssh-0.10.6-8.fc41.x86_64
libssh-config-0.10.6-8.fc41.noarch
libstdc++-14.2.1-1.fc41.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.5-0.fc41.x86_64
libtool-ltdl-2.4.7-12.fc41.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.2-8.fc41.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-7.fc41.x86_64
libxml2-2.12.8-2.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.6-6.fc41.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.x86_64
openssl-libs-3.2.2-5.fc41.x86_64
p11-kit-0.25.5-3.fc41.x86_64
p11-kit-trust-0.25.5-3.fc41.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-5.fc41.x86_64
pam-libs-1.6.1-5.fc41.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc41.x86_64
pkgconf-m4-2.3.0-1.fc41.noarch
pkgconf-pkg-config-2.3.0-1.fc41.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.14.0-1.fc41.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.14-3.fc41.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-10.fc41.x86_64
redhat-rpm-config-293-1.fc41.noarch
rpm-4.19.93-1.fc41.x86_64
rpm-build-4.19.93-1.fc41.x86_64
rpm-build-libs-4.19.93-1.fc41.x86_64
rpm-libs-4.19.93-1.fc41.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
rust-srpm-macros-26.3-3.fc41.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.15.1-9.fc41.x86_64
sqlite-libs-3.46.1-1.fc41.x86_64
systemd-libs-256.5-1.fc41.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-64.fc41.x86_64
util-linux-2.40.2-8.fc41.x86_64
util-linux-core-2.40.2-8.fc41.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-3.fc41.x86_64
xz-5.6.2-2.fc41.x86_64
xz-libs-5.6.2-2.fc41.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.1.7-2.fc41.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1725580800
Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-41-x86_64-1725633522.672366/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1725633522.672366/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-vuub_lo1/ProDy/ProDy.spec) Config(child) 0 minutes 16 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc41.src.rpm)  Config(fedora-41-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725633522.672366/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725633522.672366/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1725633522.672366/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.92-6.fc41.x86_64
  rpm-sequoia-1.7.0-2.fc41.x86_64
  dnf5-5.2.5.0-2.fc41.x86_64
  dnf5-plugins-5.2.5.0-2.fc41.x86_64
Finish: chroot init
Start: build phase for ProDy-2.4.1-7.fc41.src.rpm
Start: build setup for ProDy-2.4.1-7.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1725580800
Wrote: /builddir/build/SRPMS/ProDy-2.4.1-7.fc41.src.rpm
Updating and loading repositories:
 updates                                100% | 387.8 KiB/s |  28.3 KiB |  00m00s
 fedora                                 100% | 894.7 KiB/s |  25.9 KiB |  00m00s
 Copr repository                        100% | 170.8 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                        Arch   Version              Repository      Size
Installing:
 gcc                           x86_64 14.2.1-1.fc41        fedora     104.1 MiB
 gcc-c++                       x86_64 14.2.1-1.fc41        fedora      38.2 MiB
 python3-biopython             x86_64 1.84-3.fc41          fedora      30.0 MiB
 python3-devel                 x86_64 3.13.0~rc1-2.fc41    fedora       1.8 MiB
 python3-matplotlib            x86_64 3.9.1-2.fc41         fedora      21.1 MiB
 python3-nose                  noarch 1.3.7-60.fc41        copr_base    1.2 MiB
 python3-numpy                 x86_64 1:1.26.4-8.fc41      fedora      43.8 MiB
 python3-scipy                 x86_64 1.11.3-15.fc41       fedora      62.5 MiB
 python3-setuptools            noarch 69.2.0-8.fc41        fedora       7.2 MiB
 python3-urllib3               noarch 1.26.19-2.fc41       fedora       1.0 MiB
Installing dependencies:
 abattis-cantarell-vf-fonts    noarch 0.301-13.fc41        fedora     192.7 KiB
 annobin-docs                  noarch 12.69-1.fc41         fedora      97.7 KiB
 annobin-plugin-gcc            x86_64 12.69-1.fc41         fedora     985.0 KiB
 cairo                         x86_64 1.18.0-4.fc41        fedora       1.7 MiB
 cpp                           x86_64 14.2.1-1.fc41        fedora      35.0 MiB
 default-fonts-core-sans       noarch 4.1-2.fc41           fedora      11.9 KiB
 dejavu-sans-fonts             noarch 2.37-24.fc41         fedora       5.5 MiB
 expat                         x86_64 2.6.2-2.fc41         fedora     284.8 KiB
 flex                          x86_64 2.6.4-18.fc41        fedora     805.4 KiB
 flexiblas                     x86_64 3.4.4-3.fc41         fedora      48.5 KiB
 flexiblas-netlib              x86_64 3.4.4-3.fc41         fedora      10.7 MiB
 flexiblas-openblas-openmp     x86_64 3.4.4-3.fc41         fedora      43.3 KiB
 fontconfig                    x86_64 2.15.0-8.fc41        fedora     791.9 KiB
 fonts-filesystem              noarch 1:2.0.5-17.fc41      fedora       0.0   B
 freetype                      x86_64 2.13.2-6.fc41        fedora     850.6 KiB
 fribidi                       x86_64 1.0.15-2.fc41        fedora     368.4 KiB
 gcc-plugin-annobin            x86_64 14.2.1-1.fc41        fedora      61.1 KiB
 glib2                         x86_64 2.82.0-1.fc41        fedora      14.7 MiB
 glibc-devel                   x86_64 2.40-3.fc41          fedora      35.0 KiB
 glibc-headers-x86             noarch 2.40-3.fc41          fedora       2.2 MiB
 gnutls                        x86_64 3.8.6-7.fc41         fedora       3.2 MiB
 google-noto-fonts-common      noarch 20240701-2.fc41      fedora      17.5 KiB
 google-noto-sans-vf-fonts     noarch 20240701-2.fc41      fedora       1.2 MiB
 graphite2                     x86_64 1.3.14-16.fc41       fedora     192.0 KiB
 harfbuzz                      x86_64 9.0.0-3.fc41         fedora       2.6 MiB
 jbigkit-libs                  x86_64 2.1-30.fc41          fedora     117.6 KiB
 kernel-headers                x86_64 6.11.0-0.rc5.43.fc41 fedora       6.4 MiB
 lcms2                         x86_64 2.16-4.fc41          fedora     424.9 KiB
 libX11                        x86_64 1.8.10-2.fc41        fedora       1.3 MiB
 libX11-common                 noarch 1.8.10-2.fc41        fedora       1.1 MiB
 libXau                        x86_64 1.0.11-7.fc41        fedora      66.9 KiB
 libXext                       x86_64 1.3.6-2.fc41         fedora      90.1 KiB
 libXft                        x86_64 2.3.8-7.fc41         fedora     164.5 KiB
 libXrender                    x86_64 0.9.11-7.fc41        fedora      50.1 KiB
 libb2                         x86_64 0.98.1-12.fc41       fedora      42.2 KiB
 libgfortran                   x86_64 14.2.1-1.fc41        fedora       3.0 MiB
 libimagequant                 x86_64 4.0.3-5.fc41         fedora     666.7 KiB
 libjpeg-turbo                 x86_64 3.0.2-3.fc41         fedora     776.9 KiB
 liblerc                       x86_64 4.0.0-7.fc41         fedora     607.5 KiB
 libmpc                        x86_64 1.3.1-6.fc41         fedora     164.7 KiB
 libpng                        x86_64 2:1.6.40-4.fc41      fedora     245.8 KiB
 libqhull_r                    x86_64 1:8.0.2-5.fc41       fedora     483.4 KiB
 libquadmath                   x86_64 14.2.1-1.fc41        fedora     325.9 KiB
 libraqm                       x86_64 0.8.0-8.fc41         fedora      28.6 KiB
 libstdc++-devel               x86_64 14.2.1-1.fc41        fedora      15.4 MiB
 libtiff                       x86_64 4.6.0-6.fc41         fedora     606.0 KiB
 libwebp                       x86_64 1.4.0-4.fc41         fedora     822.6 KiB
 libxcb                        x86_64 1.17.0-2.fc41        fedora       1.1 MiB
 libxcrypt-devel               x86_64 4.4.36-7.fc41        fedora      30.3 KiB
 libxslt                       x86_64 1.1.42-2.fc41        fedora     483.1 KiB
 m4                            x86_64 1.4.19-10.fc41       fedora     592.9 KiB
 make                          x86_64 1:4.4.1-8.fc41       fedora       1.8 MiB
 mpdecimal                     x86_64 2.5.1-16.fc41        fedora     204.9 KiB
 nettle                        x86_64 3.10-3.fc41          fedora     793.0 KiB
 openblas                      x86_64 0.3.26-5.fc41        fedora      96.0 KiB
 openblas-openmp               x86_64 0.3.26-5.fc41        fedora      39.4 MiB
 openjpeg                      x86_64 2.5.2-3.fc41         fedora     445.7 KiB
 pixman                        x86_64 0.43.4-2.fc41        fedora     718.1 KiB
 pyproject-rpm-macros          noarch 1.14.0-1.fc41        fedora     105.7 KiB
 python-pip-wheel              noarch 24.2-1.fc41          copr_base    1.2 MiB
 python-rpm-macros             noarch 3.13-3.fc41          fedora      22.1 KiB
 python3                       x86_64 3.13.0~rc1-2.fc41    fedora      31.8 KiB
 python3-appdirs               noarch 1.4.4-23.fc41        fedora      68.7 KiB
 python3-brotli                x86_64 1.1.0-5.fc41         fedora     836.0 KiB
 python3-cairo                 x86_64 1.25.1-5.fc41        fedora     492.5 KiB
 python3-charset-normalizer    noarch 3.3.2-6.fc41         copr_base  314.8 KiB
 python3-contourpy             x86_64 1.2.1-4.fc41         fedora     790.5 KiB
 python3-cycler                noarch 0.11.0-14.fc41       copr_base   37.6 KiB
 python3-dateutil              noarch 1:2.8.2-16.fc41      fedora     879.2 KiB
 python3-fonttools             x86_64 4.53.1-2.fc41        copr_base   18.2 MiB
 python3-fs                    noarch 2.4.16-9.fc41        fedora       1.3 MiB
 python3-idna                  noarch 3.8-1.fc41           copr_base  596.4 KiB
 python3-kiwisolver            x86_64 1.4.7-1.fc41         copr_base  153.9 KiB
 python3-libs                  x86_64 3.13.0~rc1-2.fc41    fedora      40.3 MiB
 python3-lxml                  x86_64 5.2.1-6.fc41         fedora       4.9 MiB
 python3-matplotlib-data       noarch 3.9.1-2.fc41         fedora     741.5 KiB
 python3-matplotlib-data-fonts noarch 3.9.1-2.fc41         fedora       7.9 MiB
 python3-matplotlib-tk         x86_64 3.9.1-2.fc41         fedora     262.7 KiB
 python3-numpy-f2py            x86_64 1:1.26.4-8.fc41      fedora       2.8 MiB
 python3-olefile               noarch 0.47-5.fc41          fedora     340.4 KiB
 python3-packaging             noarch 24.1-2.fc41          fedora     422.3 KiB
 python3-pillow                x86_64 10.4.0-2.fc41        fedora       3.7 MiB
 python3-pillow-tk             x86_64 10.4.0-2.fc41        fedora      68.4 KiB
 python3-platformdirs          noarch 4.2.2-2.fc41         fedora     168.6 KiB
 python3-pooch                 noarch 1.8.2-3.fc41         fedora     625.5 KiB
 python3-pyparsing             noarch 3.1.2-7.fc41         fedora       1.0 MiB
 python3-requests              noarch 2.32.3-3.fc41        fedora     485.9 KiB
 python3-rpm-generators        noarch 14-11.fc41           fedora      81.7 KiB
 python3-rpm-macros            noarch 3.13-3.fc41          fedora       6.4 KiB
 python3-six                   noarch 1.16.0-24.fc41       copr_base  118.3 KiB
 python3-tkinter               x86_64 3.13.0~rc1-2.fc41    fedora       2.0 MiB
 tcl                           x86_64 1:8.6.14-2.fc41      fedora       4.2 MiB
 tk                            x86_64 1:8.6.14-2.fc41      fedora       3.6 MiB
 tzdata                        noarch 2024a-9.fc41         fedora       1.7 MiB
 xml-common                    noarch 0.6.3-65.fc41        fedora      78.4 KiB

Transaction Summary:
 Installing:      105 packages

Total size of inbound packages is 161 MiB. Need to download 161 MiB.
After this operation 571 MiB will be used (install 571 MiB, remove 0 B).
[  1/105] gcc-c++-0:14.2.1-1.fc41.x86_6 100% | 272.6 MiB/s |  14.2 MiB |  00m00s
[  2/105] python3-devel-0:3.13.0~rc1-2. 100% | 130.8 MiB/s | 401.9 KiB |  00m00s
[  3/105] python3-matplotlib-0:3.9.1-2. 100% | 145.3 MiB/s |   4.6 MiB |  00m00s
[  4/105] gcc-0:14.2.1-1.fc41.x86_64    100% | 289.7 MiB/s |  37.1 MiB |  00m00s
[  5/105] python3-nose-0:1.3.7-60.fc41. 100% |   7.4 MiB/s | 327.6 KiB |  00m00s
[  6/105] python3-numpy-1:1.26.4-8.fc41 100% | 206.0 MiB/s |   7.6 MiB |  00m00s
[  7/105] python3-biopython-0:1.84-3.fc 100% |  67.4 MiB/s |  11.8 MiB |  00m00s
[  8/105] python3-setuptools-0:69.2.0-8 100% |  97.8 MiB/s |   1.6 MiB |  00m00s
[  9/105] python3-urllib3-0:1.26.19-2.f 100% |  27.3 MiB/s | 279.1 KiB |  00m00s
[ 10/105] libmpc-0:1.3.1-6.fc41.x86_64  100% |   9.9 MiB/s |  71.1 KiB |  00m00s
[ 11/105] python3-scipy-0:1.11.3-15.fc4 100% | 212.0 MiB/s |  16.1 MiB |  00m00s
[ 12/105] make-1:4.4.1-8.fc41.x86_64    100% |  35.8 MiB/s | 586.1 KiB |  00m00s
[ 13/105] flex-0:2.6.4-18.fc41.x86_64   100% |  24.3 MiB/s | 298.2 KiB |  00m00s
[ 14/105] cpp-0:14.2.1-1.fc41.x86_64    100% | 205.9 MiB/s |  11.9 MiB |  00m00s
[ 15/105] dejavu-sans-fonts-0:2.37-24.f 100% |  60.2 MiB/s |   1.3 MiB |  00m00s
[ 16/105] python3-libs-0:3.13.0~rc1-2.f 100% | 206.7 MiB/s |   9.1 MiB |  00m00s
[ 17/105] libqhull_r-1:8.0.2-5.fc41.x86 100% |  17.9 MiB/s | 201.8 KiB |  00m00s
[ 18/105] freetype-0:2.13.2-6.fc41.x86_ 100% |  26.7 MiB/s | 410.7 KiB |  00m00s
[ 19/105] python3-dateutil-1:2.8.2-16.f 100% |  87.8 MiB/s | 359.7 KiB |  00m00s
[ 20/105] python3-matplotlib-tk-0:3.9.1 100% |  36.3 MiB/s | 111.6 KiB |  00m00s
[ 21/105] python3-packaging-0:24.1-2.fc 100% |  24.5 MiB/s | 125.5 KiB |  00m00s
[ 22/105] python3-contourpy-0:1.2.1-4.f 100% |  16.5 MiB/s | 270.1 KiB |  00m00s
[ 23/105] python3-pyparsing-0:3.1.2-7.f 100% |  54.2 MiB/s | 277.4 KiB |  00m00s
[ 24/105] python3-matplotlib-data-0:3.9 100% |  22.3 MiB/s | 524.7 KiB |  00m00s
[ 25/105] flexiblas-netlib-0:3.4.4-3.fc 100% | 229.9 MiB/s |   3.2 MiB |  00m00s
[ 26/105] python3-numpy-f2py-1:1.26.4-8 100% |  66.7 MiB/s | 546.3 KiB |  00m00s
[ 27/105] python3-pooch-0:1.8.2-3.fc41. 100% |  45.1 MiB/s | 138.6 KiB |  00m00s
[ 28/105] m4-0:1.4.19-10.fc41.x86_64    100% | 149.1 MiB/s | 305.4 KiB |  00m00s
[ 29/105] libgfortran-0:14.2.1-1.fc41.x 100% |  53.9 MiB/s | 938.2 KiB |  00m00s
[ 30/105] expat-0:2.6.2-2.fc41.x86_64   100% |  36.9 MiB/s | 113.4 KiB |  00m00s
[ 31/105] libb2-0:0.98.1-12.fc41.x86_64 100% |  12.5 MiB/s |  25.7 KiB |  00m00s
[ 32/105] fonts-filesystem-1:2.0.5-17.f 100% |   8.3 MiB/s |   8.5 KiB |  00m00s
[ 33/105] tzdata-0:2024a-9.fc41.noarch  100% | 174.5 MiB/s | 714.7 KiB |  00m00s
[ 34/105] mpdecimal-0:2.5.1-16.fc41.x86 100% |  17.4 MiB/s |  89.0 KiB |  00m00s
[ 35/105] libpng-2:1.6.40-4.fc41.x86_64 100% |  39.2 MiB/s | 120.3 KiB |  00m00s
[ 36/105] harfbuzz-0:9.0.0-3.fc41.x86_6 100% | 201.2 MiB/s |   1.0 MiB |  00m00s
[ 37/105] flexiblas-0:3.4.4-3.fc41.x86_ 100% |  24.7 MiB/s |  25.3 KiB |  00m00s
[ 38/105] flexiblas-openblas-openmp-0:3 100% |   8.4 MiB/s |  17.2 KiB |  00m00s
[ 39/105] libquadmath-0:14.2.1-1.fc41.x 100% |  98.4 MiB/s | 201.5 KiB |  00m00s
[ 40/105] python3-platformdirs-0:4.2.2- 100% |  45.3 MiB/s |  46.3 KiB |  00m00s
[ 41/105] python3-requests-0:2.32.3-3.f 100% |  77.8 MiB/s | 159.4 KiB |  00m00s
[ 42/105] python3-pillow-tk-0:10.4.0-2. 100% |   2.0 MiB/s |  30.3 KiB |  00m00s
[ 43/105] graphite2-0:1.3.14-16.fc41.x8 100% |  46.5 MiB/s |  95.1 KiB |  00m00s
[ 44/105] glib2-0:2.82.0-1.fc41.x86_64  100% | 217.8 MiB/s |   3.0 MiB |  00m00s
[ 45/105] python3-pillow-0:10.4.0-2.fc4 100% |  96.4 MiB/s | 987.3 KiB |  00m00s
[ 46/105] gnutls-0:3.8.6-7.fc41.x86_64  100% | 123.3 MiB/s |   1.1 MiB |  00m00s
[ 47/105] lcms2-0:2.16-4.fc41.x86_64    100% |  44.0 MiB/s | 180.3 KiB |  00m00s
[ 48/105] libimagequant-0:4.0.3-5.fc41. 100% |  98.0 MiB/s | 301.2 KiB |  00m00s
[ 49/105] openblas-openmp-0:0.3.26-5.fc 100% | 202.6 MiB/s |   5.1 MiB |  00m00s
[ 50/105] libjpeg-turbo-0:3.0.2-3.fc41. 100% |  37.0 MiB/s | 227.3 KiB |  00m00s
[ 51/105] libraqm-0:0.8.0-8.fc41.x86_64 100% |   9.7 MiB/s |  19.9 KiB |  00m00s
[ 52/105] libtiff-0:4.6.0-6.fc41.x86_64 100% | 103.5 MiB/s | 212.0 KiB |  00m00s
[ 53/105] libxcb-0:1.17.0-2.fc41.x86_64 100% |  58.3 MiB/s | 239.0 KiB |  00m00s
[ 54/105] libwebp-0:1.4.0-4.fc41.x86_64 100% |  47.5 MiB/s | 292.0 KiB |  00m00s
[ 55/105] openjpeg-0:2.5.2-3.fc41.x86_6 100% |  91.2 MiB/s | 186.8 KiB |  00m00s
[ 56/105] python3-olefile-0:0.47-5.fc41 100% |  36.4 MiB/s |  74.6 KiB |  00m00s
[ 57/105] nettle-0:3.10-3.fc41.x86_64   100% | 139.5 MiB/s | 428.5 KiB |  00m00s
[ 58/105] python3-matplotlib-data-fonts 100% |  32.5 MiB/s |   2.3 MiB |  00m00s
[ 59/105] fribidi-0:1.0.15-2.fc41.x86_6 100% |  22.5 MiB/s |  92.2 KiB |  00m00s
[ 60/105] jbigkit-libs-0:2.1-30.fc41.x8 100% |  26.0 MiB/s |  53.3 KiB |  00m00s
[ 61/105] liblerc-0:4.0.0-7.fc41.x86_64 100% | 102.7 MiB/s | 210.3 KiB |  00m00s
[ 62/105] libXau-0:1.0.11-7.fc41.x86_64 100% |  15.6 MiB/s |  31.9 KiB |  00m00s
[ 63/105] python3-cairo-0:1.25.1-5.fc41 100% |  60.8 MiB/s | 124.6 KiB |  00m00s
[ 64/105] python3-tkinter-0:3.13.0~rc1- 100% | 123.2 MiB/s | 378.6 KiB |  00m00s
[ 65/105] cairo-0:1.18.0-4.fc41.x86_64  100% | 138.6 MiB/s | 709.9 KiB |  00m00s
[ 66/105] tcl-1:8.6.14-2.fc41.x86_64    100% | 110.3 MiB/s |   1.1 MiB |  00m00s
[ 67/105] fontconfig-0:2.15.0-8.fc41.x8 100% |  52.7 MiB/s | 269.9 KiB |  00m00s
[ 68/105] tk-1:8.6.14-2.fc41.x86_64     100% | 161.7 MiB/s |   1.6 MiB |  00m00s
[ 69/105] libXext-0:1.3.6-2.fc41.x86_64 100% |  19.1 MiB/s |  39.1 KiB |  00m00s
[ 70/105] libXrender-0:0.9.11-7.fc41.x8 100% |  13.4 MiB/s |  27.5 KiB |  00m00s
[ 71/105] pixman-0:0.43.4-2.fc41.x86_64 100% |  95.7 MiB/s | 294.1 KiB |  00m00s
[ 72/105] libX11-0:1.8.10-2.fc41.x86_64 100% |  79.3 MiB/s | 649.9 KiB |  00m00s
[ 73/105] libXft-0:2.3.8-7.fc41.x86_64  100% |  17.7 MiB/s |  72.3 KiB |  00m00s
[ 74/105] default-fonts-core-sans-0:4.1 100% |  15.2 MiB/s |  31.1 KiB |  00m00s
[ 75/105] xml-common-0:0.6.3-65.fc41.no 100% |  15.3 MiB/s |  31.2 KiB |  00m00s
[ 76/105] abattis-cantarell-vf-fonts-0: 100% | 117.4 MiB/s | 120.2 KiB |  00m00s
[ 77/105] google-noto-sans-vf-fonts-0:2 100% | 193.4 MiB/s | 594.1 KiB |  00m00s
[ 78/105] libX11-common-0:1.8.10-2.fc41 100% |  34.3 MiB/s | 175.8 KiB |  00m00s
[ 79/105] google-noto-fonts-common-0:20 100% |   5.9 MiB/s |  18.0 KiB |  00m00s
[ 80/105] python3-0:3.13.0~rc1-2.fc41.x 100% |   8.9 MiB/s |  27.2 KiB |  00m00s
[ 81/105] gcc-plugin-annobin-0:14.2.1-1 100% |  17.6 MiB/s |  54.2 KiB |  00m00s
[ 82/105] annobin-plugin-gcc-0:12.69-1. 100% | 135.5 MiB/s | 971.0 KiB |  00m00s
[ 83/105] pyproject-rpm-macros-0:1.14.0 100% |  20.8 MiB/s |  42.6 KiB |  00m00s
[ 84/105] annobin-docs-0:12.69-1.fc41.n 100% |  14.9 MiB/s |  91.8 KiB |  00m00s
[ 85/105] python3-rpm-macros-0:3.13-3.f 100% |  12.2 MiB/s |  12.4 KiB |  00m00s
[ 86/105] python-rpm-macros-0:3.13-3.fc 100% |  17.3 MiB/s |  17.7 KiB |  00m00s
[ 87/105] python3-idna-0:3.8-1.fc41.noa 100% |  54.2 MiB/s | 111.0 KiB |  00m00s
[ 88/105] python3-charset-normalizer-0: 100% |  48.7 MiB/s |  99.7 KiB |  00m00s
[ 89/105] python3-brotli-0:1.1.0-5.fc41 100% |  66.6 MiB/s | 341.1 KiB |  00m00s
[ 90/105] python3-cycler-0:0.11.0-14.fc 100% |   1.4 MiB/s |  21.8 KiB |  00m00s
[ 91/105] python3-lxml-0:5.2.1-6.fc41.x 100% | 195.5 MiB/s |   1.4 MiB |  00m00s
[ 92/105] python3-appdirs-0:1.4.4-23.fc 100% |  23.0 MiB/s |  23.5 KiB |  00m00s
[ 93/105] libxslt-0:1.1.42-2.fc41.x86_6 100% | 184.7 MiB/s | 189.1 KiB |  00m00s
[ 94/105] python3-fs-0:2.4.16-9.fc41.no 100% |  13.2 MiB/s | 310.0 KiB |  00m00s
[ 95/105] python-pip-wheel-0:24.2-1.fc4 100% | 240.5 MiB/s |   1.2 MiB |  00m00s
[ 96/105] python3-six-0:1.16.0-24.fc41. 100% |  40.8 MiB/s |  41.8 KiB |  00m00s
[ 97/105] python3-rpm-generators-0:14-1 100% |  28.6 MiB/s |  29.3 KiB |  00m00s
[ 98/105] openblas-0:0.3.26-5.fc41.x86_ 100% |  37.8 MiB/s |  38.7 KiB |  00m00s
[ 99/105] libstdc++-devel-0:14.2.1-1.fc 100% | 229.2 MiB/s |   2.8 MiB |  00m00s
[100/105] python3-fonttools-0:4.53.1-2. 100% |  51.9 MiB/s |   2.9 MiB |  00m00s
[101/105] glibc-devel-0:2.40-3.fc41.x86 100% |  43.4 MiB/s | 133.3 KiB |  00m00s
[102/105] libxcrypt-devel-0:4.4.36-7.fc 100% |  28.2 MiB/s |  28.9 KiB |  00m00s
[103/105] glibc-headers-x86-0:2.40-3.fc 100% | 154.0 MiB/s | 630.8 KiB |  00m00s
[104/105] python3-kiwisolver-0:1.4.7-1. 100% |   1.7 MiB/s |  67.3 KiB |  00m00s
[105/105] kernel-headers-0:6.11.0-0.rc5 100% | 203.0 MiB/s |   1.6 MiB |  00m00s
--------------------------------------------------------------------------------
[105/105] Total                         100% | 214.6 MiB/s | 161.4 MiB |  00m01s
Running transaction
[  1/107] Verify package files          100% | 242.0   B/s | 105.0   B |  00m00s
[  2/107] Prepare transaction           100% |   1.4 KiB/s | 105.0   B |  00m00s
[  3/107] Installing fonts-filesystem-1 100% |   0.0   B/s | 788.0   B |  00m00s
[  4/107] Installing python-rpm-macros- 100% |   0.0   B/s |  22.8 KiB |  00m00s
[  5/107] Installing libgfortran-0:14.2 100% | 507.4 MiB/s |   3.0 MiB |  00m00s
[  6/107] Installing libmpc-0:1.3.1-6.f 100% | 162.3 MiB/s | 166.2 KiB |  00m00s
[  7/107] Installing python3-rpm-macros 100% |   0.0   B/s |   6.7 KiB |  00m00s
[  8/107] Installing python3-matplotlib 100% | 416.4 MiB/s |   7.9 MiB |  00m00s
[  9/107] Installing python3-matplotlib 100% | 247.0 MiB/s | 758.7 KiB |  00m00s
[ 10/107] Installing tcl-1:8.6.14-2.fc4 100% | 384.2 MiB/s |   4.2 MiB |  00m00s
[ 11/107] Installing libwebp-0:1.4.0-4. 100% | 403.7 MiB/s | 826.8 KiB |  00m00s
[ 12/107] Installing libjpeg-turbo-0:3. 100% | 380.2 MiB/s | 778.7 KiB |  00m00s
[ 13/107] Installing libpng-2:1.6.40-4. 100% |  60.3 MiB/s | 247.1 KiB |  00m00s
[ 14/107] Installing tzdata-0:2024a-9.f 100% |  77.6 MiB/s |   1.9 MiB |  00m00s
[ 15/107] Installing pyproject-rpm-macr 100% | 105.1 MiB/s | 107.7 KiB |  00m00s
[ 16/107] Installing cpp-0:14.2.1-1.fc4 100% | 443.1 MiB/s |  35.0 MiB |  00m00s
[ 17/107] Installing dejavu-sans-fonts- 100% | 500.8 MiB/s |   5.5 MiB |  00m00s
[ 18/107] Installing abattis-cantarell- 100% |  94.9 MiB/s | 194.4 KiB |  00m00s
[ 19/107] Installing kernel-headers-0:6 100% | 261.7 MiB/s |   6.5 MiB |  00m00s
[ 20/107] Installing glibc-headers-x86- 100% | 228.6 MiB/s |   2.3 MiB |  00m00s
[ 21/107] Installing libxcrypt-devel-0: 100% |  31.8 MiB/s |  32.6 KiB |  00m00s
[ 22/107] Installing glibc-devel-0:2.40 100% |  18.7 MiB/s |  38.4 KiB |  00m00s
[ 23/107] Installing libstdc++-devel-0: 100% | 471.3 MiB/s |  15.6 MiB |  00m00s
[ 24/107] Installing openblas-0:0.3.26- 100% |   0.0   B/s |  97.8 KiB |  00m00s
[ 25/107] Installing openblas-openmp-0: 100% | 690.7 MiB/s |  39.4 MiB |  00m00s
[ 26/107] Installing python-pip-wheel-0 100% | 620.8 MiB/s |   1.2 MiB |  00m00s
[ 27/107] Installing libxslt-0:1.1.42-2 100% | 237.4 MiB/s | 486.2 KiB |  00m00s
[ 28/107] Installing annobin-docs-0:12. 100% |   0.0   B/s |  98.8 KiB |  00m00s
[ 29/107] Installing google-noto-fonts- 100% |   0.0   B/s |  18.3 KiB |  00m00s
[ 30/107] Installing google-noto-sans-v 100% | 416.3 MiB/s |   1.2 MiB |  00m00s
[ 31/107] Installing default-fonts-core 100% |  17.8 MiB/s |  18.2 KiB |  00m00s
[ 32/107] Installing libX11-common-0:1. 100% | 107.9 MiB/s |   1.2 MiB |  00m00s
>>> Running pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch
>>> Stop pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch
[ 33/107] Installing xml-common-0:0.6.3 100% |  79.2 MiB/s |  81.1 KiB |  00m00s
[ 34/107] Installing pixman-0:0.43.4-2. 100% | 351.2 MiB/s | 719.2 KiB |  00m00s
[ 35/107] Installing libXau-0:1.0.11-7. 100% |  66.8 MiB/s |  68.4 KiB |  00m00s
[ 36/107] Installing libxcb-0:1.17.0-2. 100% | 279.1 MiB/s |   1.1 MiB |  00m00s
[ 37/107] Installing libX11-0:1.8.10-2. 100% | 427.2 MiB/s |   1.3 MiB |  00m00s
[ 38/107] Installing libXrender-0:0.9.1 100% |   0.0   B/s |  51.4 KiB |  00m00s
[ 39/107] Installing libXext-0:1.3.6-2. 100% |   0.0   B/s |  91.3 KiB |  00m00s
[ 40/107] Installing liblerc-0:4.0.0-7. 100% | 297.4 MiB/s | 609.0 KiB |  00m00s
[ 41/107] Installing jbigkit-libs-0:2.1 100% | 116.8 MiB/s | 119.6 KiB |  00m00s
[ 42/107] Installing libtiff-0:4.6.0-6. 100% | 297.0 MiB/s | 608.2 KiB |  00m00s
[ 43/107] Installing fribidi-0:1.0.15-2 100% | 362.2 MiB/s | 370.9 KiB |  00m00s
[ 44/107] Installing nettle-0:3.10-3.fc 100% | 388.7 MiB/s | 796.1 KiB |  00m00s
[ 45/107] Installing gnutls-0:3.8.6-7.f 100% | 358.2 MiB/s |   3.2 MiB |  00m00s
[ 46/107] Installing glib2-0:2.82.0-1.f 100% | 445.1 MiB/s |  14.7 MiB |  00m00s
[ 47/107] Installing openjpeg-0:2.5.2-3 100% | 437.2 MiB/s | 447.7 KiB |  00m00s
[ 48/107] Installing libimagequant-0:4. 100% | 326.3 MiB/s | 668.3 KiB |  00m00s
[ 49/107] Installing lcms2-0:2.16-4.fc4 100% | 416.5 MiB/s | 426.5 KiB |  00m00s
[ 50/107] Installing graphite2-0:1.3.14 100% | 189.6 MiB/s | 194.1 KiB |  00m00s
[ 51/107] Installing harfbuzz-0:9.0.0-3 100% | 378.6 MiB/s |   2.7 MiB |  00m00s
[ 52/107] Installing freetype-0:2.13.2- 100% | 277.4 MiB/s | 852.3 KiB |  00m00s
[ 53/107] Installing fontconfig-0:2.15. 100% | 795.2 KiB/s | 811.1 KiB |  00m01s
>>> Running post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
[ 54/107] Installing cairo-0:1.18.0-4.f 100% | 348.7 MiB/s |   1.7 MiB |  00m00s
[ 55/107] Installing libXft-0:2.3.8-7.f 100% |  40.5 MiB/s | 166.0 KiB |  00m00s
>>> Running pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64
>>> Stop pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64
[ 56/107] Installing tk-1:8.6.14-2.fc41 100% | 305.0 MiB/s |   3.7 MiB |  00m00s
[ 57/107] Installing libraqm-0:0.8.0-8. 100% |   0.0   B/s |  29.7 KiB |  00m00s
[ 58/107] Installing libquadmath-0:14.2 100% | 319.5 MiB/s | 327.2 KiB |  00m00s
[ 59/107] Installing flexiblas-0:3.4.4- 100% |   0.0   B/s |  49.7 KiB |  00m00s
[ 60/107] Installing flexiblas-openblas 100% |   0.0   B/s |  44.1 KiB |  00m00s
[ 61/107] Installing flexiblas-netlib-0 100% | 444.4 MiB/s |  10.7 MiB |  00m00s
[ 62/107] Installing mpdecimal-0:2.5.1- 100% | 201.2 MiB/s | 206.0 KiB |  00m00s
[ 63/107] Installing libb2-0:0.98.1-12. 100% |   0.0   B/s |  43.3 KiB |  00m00s
[ 64/107] Installing expat-0:2.6.2-2.fc 100% |  56.0 MiB/s | 286.8 KiB |  00m00s
[ 65/107] Installing python3-libs-0:3.1 100% | 406.9 MiB/s |  40.7 MiB |  00m00s
[ 66/107] Installing python3-0:3.13.0~r 100% |   8.2 MiB/s |  33.6 KiB |  00m00s
[ 67/107] Installing python3-numpy-1:1. 100% | 474.6 MiB/s |  44.1 MiB |  00m00s
[ 68/107] Installing python3-packaging- 100% | 141.0 MiB/s | 433.2 KiB |  00m00s
[ 69/107] Installing python3-setuptools 100% | 318.7 MiB/s |   7.3 MiB |  00m00s
[ 70/107] Installing python3-tkinter-0: 100% | 395.8 MiB/s |   2.0 MiB |  00m00s
[ 71/107] Installing python3-idna-0:3.8 100% | 294.3 MiB/s | 602.7 KiB |  00m00s
[ 72/107] Installing python3-six-0:1.16 100% | 117.9 MiB/s | 120.7 KiB |  00m00s
[ 73/107] Installing python3-dateutil-1 100% | 290.7 MiB/s | 892.9 KiB |  00m00s
[ 74/107] Installing python3-urllib3-0: 100% | 250.7 MiB/s |   1.0 MiB |  00m00s
[ 75/107] Installing python3-rpm-genera 100% |  81.0 MiB/s |  82.9 KiB |  00m00s
[ 76/107] Installing python3-devel-0:3. 100% | 258.7 MiB/s |   1.8 MiB |  00m00s
[ 77/107] Installing python3-numpy-f2py 100% | 283.6 MiB/s |   2.8 MiB |  00m00s
[ 78/107] Installing python3-contourpy- 100% | 261.4 MiB/s | 803.0 KiB |  00m00s
[ 79/107] Installing python3-pyparsing- 100% | 329.6 MiB/s |   1.0 MiB |  00m00s
[ 80/107] Installing python3-platformdi 100% | 170.9 MiB/s | 175.0 KiB |  00m00s
[ 81/107] Installing python3-olefile-0: 100% | 167.8 MiB/s | 343.6 KiB |  00m00s
[ 82/107] Installing python3-pillow-0:1 100% | 339.8 MiB/s |   3.7 MiB |  00m00s
[ 83/107] Installing python3-pillow-tk- 100% |   0.0   B/s |  70.1 KiB |  00m00s
[ 84/107] Installing python3-cairo-0:1. 100% | 242.5 MiB/s | 496.6 KiB |  00m00s
[ 85/107] Installing python3-charset-no 100% | 158.5 MiB/s | 324.7 KiB |  00m00s
[ 86/107] Installing python3-requests-0 100% | 243.2 MiB/s | 498.0 KiB |  00m00s
[ 87/107] Installing python3-pooch-0:1. 100% | 104.2 MiB/s | 640.5 KiB |  00m00s
[ 88/107] Installing python3-scipy-0:1. 100% | 446.0 MiB/s |  62.9 MiB |  00m00s
[ 89/107] Installing python3-cycler-0:0 100% |   0.0   B/s |  39.8 KiB |  00m00s
[ 90/107] Installing python3-brotli-0:1 100% | 272.9 MiB/s | 838.5 KiB |  00m00s
[ 91/107] Installing python3-lxml-0:5.2 100% | 382.1 MiB/s |   5.0 MiB |  00m00s
[ 92/107] Installing python3-appdirs-0: 100% |  69.2 MiB/s |  70.9 KiB |  00m00s
[ 93/107] Installing python3-fs-0:2.4.1 100% | 223.6 MiB/s |   1.3 MiB |  00m00s
[ 94/107] Installing python3-fonttools- 100% | 428.5 MiB/s |  18.4 MiB |  00m00s
[ 95/107] Installing python3-kiwisolver 100% | 154.1 MiB/s | 157.8 KiB |  00m00s
[ 96/107] Installing m4-0:1.4.19-10.fc4 100% | 195.1 MiB/s | 599.2 KiB |  00m00s
[ 97/107] Installing flex-0:2.6.4-18.fc 100% | 264.1 MiB/s | 811.4 KiB |  00m00s
[ 98/107] Installing libqhull_r-1:8.0.2 100% | 472.9 MiB/s | 484.2 KiB |  00m00s
[ 99/107] Installing python3-matplotlib 100% |  86.4 MiB/s | 265.3 KiB |  00m00s
[100/107] Installing python3-matplotlib 100% | 418.3 MiB/s |  21.3 MiB |  00m00s
[101/107] Installing make-1:4.4.1-8.fc4 100% | 300.0 MiB/s |   1.8 MiB |  00m00s
[102/107] Installing gcc-0:14.2.1-1.fc4 100% | 482.4 MiB/s | 104.2 MiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[103/107] Installing gcc-c++-0:14.2.1-1 100% | 443.8 MiB/s |  38.2 MiB |  00m00s
[104/107] Installing annobin-plugin-gcc 100% |  87.6 MiB/s | 986.7 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[105/107] Installing gcc-plugin-annobin 100% |   4.4 MiB/s |  62.7 KiB |  00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[106/107] Installing python3-biopython- 100% | 415.4 MiB/s |  30.3 MiB |  00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[107/107] Installing python3-nose-0:1.3 100% |   8.0 MiB/s |   1.3 MiB |  00m00s
>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc41.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc41.x86_64
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
Complete!
Warning: skipped PGP checks for 8 packages from repository: copr_base
Finish: build setup for ProDy-2.4.1-7.fc41.src.rpm
Start: rpmbuild ProDy-2.4.1-7.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1725580800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.vAlzRJ
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ test -d /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QTt2z2
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ rm -rf ProDy-2.4.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd ProDy-2.4.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';'
+ find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Acpy1o
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd ProDy-2.4.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP'
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-313
creating build/lib.linux-x86_64-cpython-313/prody
copying prody/__init__.py -> build/lib.linux-x86_64-cpython-313/prody
creating build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/subset.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/selection.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/select.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/segment.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/residue.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/pointer.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/nbexclusion.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/improper.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/hierview.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/functions.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/flags.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/fields.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/donor.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/dihedral.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/crossterm.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/chain.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/bond.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/atommap.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/atomic.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/atomgroup.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/atom.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/angle.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/acceptor.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
creating build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/uniprot.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/quartataweb.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/pfam.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/goa.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/dali.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/cath.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/database
creating build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/vmdfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/signature.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/sampling.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/rtb.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/plotting.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/perturb.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/pca.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/nmdfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/nma.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/modeset.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/mode.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/mechstiff.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/imanm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/heatmapper.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/gnm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/gamma.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/functions.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/exgnm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/exanm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/essa.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/entropy.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/editing.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/compare.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/clustenm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/bildfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/bbenm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/anm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/analysis.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/adaptive.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
creating build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/pdbensemble.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/functions.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/ensemble.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/conformation.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
creating build/lib.linux-x86_64-cpython-313/prody/kdtree
copying prody/kdtree/kdtree.py -> build/lib.linux-x86_64-cpython-313/prody/kdtree
copying prody/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/kdtree
creating build/lib.linux-x86_64-cpython-313/prody/measure
copying prody/measure/transform.py -> build/lib.linux-x86_64-cpython-313/prody/measure
copying prody/measure/measure.py -> build/lib.linux-x86_64-cpython-313/prody/measure
copying prody/measure/contacts.py -> build/lib.linux-x86_64-cpython-313/prody/measure
copying prody/measure/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/measure
creating build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/wwpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/waterbridges.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/stride.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/starfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/pdbfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/pdbclusters.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/localpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/header.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/functions.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/fixer.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/emdfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/dssp.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/compare.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/cifheader.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/ciffile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/blastpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
creating build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/sequence.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/plotting.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/msafile.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/msa.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/analysis.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
creating build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/trajfile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/trajectory.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/trajbase.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/psffile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/frame.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/dcdfile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
creating build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/straw.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/norm.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/hic.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/functions.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/cluster.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
creating build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/pdbligands.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/functions.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/ccd.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/bird.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
creating build/lib.linux-x86_64-cpython-313/prody/domain_decomposition
copying prody/domain_decomposition/spectrus.py -> build/lib.linux-x86_64-cpython-313/prody/domain_decomposition
copying prody/domain_decomposition/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/domain_decomposition
creating build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/settings.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/seqtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/pathtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/misctools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/logger.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/legacy.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/laptools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/eigtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/drawtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/doctools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/checkers.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/catchall.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/TreeConstruction.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
creating build/lib.linux-x86_64-cpython-313/prody/apps
copying prody/apps/apptools.py -> build/lib.linux-x86_64-cpython-313/prody/apps
copying prody/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps
creating build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
creating build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
creating build/lib.linux-x86_64-cpython-313/prody/tests
copying prody/tests/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests
creating build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
creating build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_subset.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_select.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_hierview.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_fragment.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_atommap.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_atomic.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
creating build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
creating build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_signature.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_pca.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_enms.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_editing.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
creating build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/test_functions.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
creating build/lib.linux-x86_64-cpython-313/prody/tests/kdtree
copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-x86_64-cpython-313/prody/tests/kdtree
copying prody/tests/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/kdtree
creating build/lib.linux-x86_64-cpython-313/prody/tests/measure
copying prody/tests/measure/test_transform.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure
copying prody/tests/measure/test_measure.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure
copying prody/tests/measure/test_contacts.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure
copying prody/tests/measure/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure
creating build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_header.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_dssp.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
creating build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/test_sequence.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/test_msafile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/test_msa.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/test_analysis.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
creating build/lib.linux-x86_64-cpython-313/prody/tests/trajectory
copying prody/tests/trajectory/test_frame.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory
copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory
copying prody/tests/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory
creating build/lib.linux-x86_64-cpython-313/prody/tests/utilities
copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities
copying prody/tests/utilities/test_misctools.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities
copying prody/tests/utilities/test_checkers.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities
copying prody/tests/utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities
creating build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles
copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles
copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles
copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
running build_ext
building 'prody.dynamics.rtbtools' extension
creating build/temp.linux-x86_64-cpython-313
creating build/temp.linux-x86_64-cpython-313/prody
creating build/temp.linux-x86_64-cpython-313/prody/dynamics
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-x86_64-cpython-313/prody/dynamics/rtbtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/dynamics/rtbtools.cpython-313-x86_64-linux-gnu.so
building 'prody.dynamics.smtools' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-x86_64-cpython-313/prody/dynamics/smtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/dynamics/smtools.cpython-313-x86_64-linux-gnu.so
building 'prody.sequence.msatools' extension
creating build/temp.linux-x86_64-cpython-313/prody/sequence
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/msatools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/msatools.cpython-313-x86_64-linux-gnu.so
building 'prody.sequence.msaio' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/msaio.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/msaio.cpython-313-x86_64-linux-gnu.so
building 'prody.sequence.seqtools' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/seqtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/seqtools.cpython-313-x86_64-linux-gnu.so
building 'prody.kdtree._CKDTree' extension
creating build/temp.linux-x86_64-cpython-313/prody/kdtree
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTree.o
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTreemodule.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTree.o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/kdtree/_CKDTree.cpython-313-x86_64-linux-gnu.so
building 'prody.proteins.ccealign' extension
creating build/temp.linux-x86_64-cpython-313/prody/proteins
creating build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign/ccealignmodule.o
In file included from prody/utilities/tnt/tnt.h:41,
                 from prody/proteins/ccealign/ccealignmodule.h:43,
                 from prody/proteins/ccealign/ccealignmodule.cpp:38:
In member function ‘TNT::Array1D<double>::set_(double*, double*, double const&)’,
    inlined from ‘TNT::Array1D<double>::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6,
    inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26:
prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
  260 |                 *p = a;
      |                 ~~~^~~
g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/proteins/ccealign.cpython-313-x86_64-linux-gnu.so
In member function ‘set_’,
    inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6,
    inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26:
prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
  260 |                 *p = a;
      |                    ^
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.UNoDSu
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build
+ mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd ProDy-2.4.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr
running install
/usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        Follow the current Python packaging guidelines when building
        Python RPM packages.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
        and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
        ********************************************************************************

!!
  self.initialize_options()
running install_lib
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition
copying build/lib.linux-x86_64-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition
copying build/lib.linux-x86_64-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/seqtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/msaio.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/msatools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/ccealign.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
copying build/lib.linux-x86_64-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
copying build/lib.linux-x86_64-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
copying build/lib.linux-x86_64-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
copying build/lib.linux-x86_64-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/kdtree/_CKDTree.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/smtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/rtbtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc
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/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc
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byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc
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byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc
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byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc
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byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc
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byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc
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byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc
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byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
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byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc
writing byte-compilation script '/tmp/tmpoja6yx01.py'
/usr/bin/python3 /tmp/tmpoja6yx01.py
/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
removing /tmp/tmpoja6yx01.py
running install_egg_info
running egg_info
creating ProDy.egg-info
writing ProDy.egg-info/PKG-INFO
writing dependency_links to ProDy.egg-info/dependency_links.txt
writing entry points to ProDy.egg-info/entry_points.txt
writing requirements to ProDy.egg-info/requires.txt
writing top-level names to ProDy.egg-info/top_level.txt
writing manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'prody/*/*/*.c'
warning: no files found matching 'prody/*/*.cpp'
warning: no files found matching 'prody/utilities/datafiles/*.txt'
adding license file 'LICENSE.rst'
writing manifest file 'ProDy.egg-info/SOURCES.txt'
Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info
running install_scripts
Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody
+ cd scripts
+ cp -pr ./prody ./python3.13-prody
+ cp -pr ./evol ./python3.13-evol
+ sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol
+ for i in prody-3.13
+ touch -r ./python3.13-prody prody-3.13
+ install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13
+ for i in evol-3.13
+ touch -r ./python3.13-evol evol-3.13
+ install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13
+ cd ..
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-7.fc41 --unique-debug-suffix -2.4.1-7.fc41.x86_64 --unique-debug-src-base ProDy-2.4.1-7.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1
find-debuginfo: starting
Extracting debug info from 7 files
DWARF-compressing 7 files
sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-7.fc41.x86_64
464 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py:48: SyntaxWarning: invalid escape sequence '\i'
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomic.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/selection.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomgroup.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/segment.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/select.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/nbexclusion.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/residue.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/improper.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/pointer.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/hierview.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/crossterm.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/functions.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/chain.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/donor.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/dihedral.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/angle.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/uniprot.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/dali.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/quartataweb.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/pfam.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/cath.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/goa.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/vmdfile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/sampling.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/signature.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/plotting.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/bond.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/rtb.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/perturb.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/functions.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/entropy.cpython-313.opt-1.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_select.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_contacts.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_gnm.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_pca.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_fetch.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_clustenm.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_biomol.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_energy.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_anm.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_eda.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_blast.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_catdcd.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/prody_align.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__pycache__/nmaoptions.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_conserv.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_search.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_refine.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_coevol.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_rankorder.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_occupancy.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_merge.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_filter.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__pycache__/evol_fetch.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_pca.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_gnm.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_examples.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_anm.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_subset.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__pycache__/test_prody_catdcd.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_hierview.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_fragment.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_atommap.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_select.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__pycache__/__init__.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_atomic.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__pycache__/__init__.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_signature.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_signature.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_pca.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_editing.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_pdbensemble.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_enms.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_functions.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_functions.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_ensemble.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_conformation.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__pycache__/test_kdtree.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_transform.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_measure.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_contacts.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_wwpdb.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_localpdb.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_pdbfile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_header.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_ciffile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msa.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_sequence.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msafile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_analysis.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_dcdfile.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_frame.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_misctools.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_checkers.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_dssp.cpython-313.opt-1.pyc: rewriting with normalized contents
Scanned 89 directories and 714 files,
               processed 233 inodes,
               233 modified (52 replaced + 181 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: python3-ProDy-2.4.1-7.fc41.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.pRjBYC
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd ProDy-2.4.1
+ DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ARaYMd
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd ProDy-2.4.1
+ LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy
+ cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy
+ RPM_EC=0
++ jobs -p
+ exit 0
warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol
warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody
Provides: ProDy = 0:2.4.1-7.fc41 python-ProDy = 2.4.1-7.fc41 python3-ProDy = 2.4.1-7.fc41 python3-ProDy(x86-64) = 2.4.1-7.fc41 python3.13-ProDy = 2.4.1-7.fc41 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) python3.13dist(scipy) python3.13dist(setuptools)
Obsoletes: python-ProDy < 2.4.1-7.fc41
Processing files: ProDy-debugsource-2.4.1-7.fc41.x86_64
Provides: ProDy-debugsource = 2.4.1-7.fc41 ProDy-debugsource(x86-64) = 2.4.1-7.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-ProDy-debuginfo-2.4.1-7.fc41.x86_64
Provides: debuginfo(build-id) = 47fd938b473879ffcdb55d94b001ff9fbf30ef32 debuginfo(build-id) = 493ace8d6d7a2bf159acb1dfaf09425be60b6d7b debuginfo(build-id) = 5fa8fb8854b61495fc16b5515acea7dd8b09dac6 debuginfo(build-id) = 645209fe9d88bb9a1dba051c40892778bbcbdf15 debuginfo(build-id) = 90e562763d3d374b077d2b83e6d8d041a2bf745b debuginfo(build-id) = b70ca649400c9d0e589175470f2dcce33e3e8c38 debuginfo(build-id) = efb45847a6e7eb37bc9c30a9150f5a197a22189f python-ProDy-debuginfo = 2.4.1-7.fc41 python3-ProDy-debuginfo = 2.4.1-7.fc41 python3-ProDy-debuginfo(x86-64) = 2.4.1-7.fc41 python3.13-ProDy-debuginfo = 2.4.1-7.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: ProDy-debugsource(x86-64) = 2.4.1-7.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-7.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-7.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-7.fc41.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.QBogJm
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ test -d /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build
+ rm -rf /builddir/build/BUILD/ProDy-2.4.1-build
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol
    absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody
Finish: rpmbuild ProDy-2.4.1-7.fc41.src.rpm
Finish: build phase for ProDy-2.4.1-7.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1725633522.672366/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-7.fc41.src.rpm) Config(child) 1 minutes 10 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "ProDy",
            "epoch": null,
            "version": "2.4.1",
            "release": "7.fc41",
            "arch": "src"
        },
        {
            "name": "ProDy-debugsource",
            "epoch": null,
            "version": "2.4.1",
            "release": "7.fc41",
            "arch": "x86_64"
        },
        {
            "name": "python3-ProDy",
            "epoch": null,
            "version": "2.4.1",
            "release": "7.fc41",
            "arch": "x86_64"
        },
        {
            "name": "python3-ProDy-debuginfo",
            "epoch": null,
            "version": "2.4.1",
            "release": "7.fc41",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished