Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c188' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8297830-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.2 PID: 8734 Logging PID: 8735 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8297830, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7cb50615f7819217cfe177f0ea5076812612f8b5', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:6/morphio', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'morphio', 'package_version': '3.4.0-4', 'project_dirname': 'automatic-obsoletes:pr:6', 'project_name': 'automatic-obsoletes', 'project_owner': 'torsava', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/packit', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/packit', 'tags': [], 'task_id': '8297830-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:6/morphio /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:6/morphio', '/var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio'... Running: git checkout 7cb50615f7819217cfe177f0ea5076812612f8b5 -- cmd: ['git', 'checkout', '7cb50615f7819217cfe177f0ea5076812612f8b5', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio rc: 0 stdout: stderr: Note: switching to '7cb50615f7819217cfe177f0ea5076812612f8b5'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7cb5061 automatic import of morphio Running: dist-git-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1732210602.760077 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1732210602.760077 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio/morphio.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210602.760077/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-x86_64-bootstrap-1732210602.760077/root INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/fbf251198d865bcc0302539eac8fc14533bce6e70eaa008da56576c9bd2c73ac/merged INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/fbf251198d865bcc0302539eac8fc14533bce6e70eaa008da56576c9bd2c73ac/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1732210602.760077/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.7.0-1.fc41.x86_64 dnf5-plugins-5.2.7.0-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 848.3 KiB/s | 5.1 MiB | 00m06s fedora 100% | 21.6 MiB/s | 35.4 MiB | 00m02s Copr repository 100% | 15.9 MiB/s | 3.9 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-1.fc41 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-11.fc41 updates 5.7 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 41-27 updates 19.6 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40-11.fc41 updates 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1-3.fc41 fedora 361.8 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 293-1.fc41 fedora 183.5 KiB rpm-build x86_64 4.20.0-1.fc41 copr_base 194.3 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-12.fc41 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.2-8.fc41 copr_base 3.6 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.2-2.fc41 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.3.6-3.fc41 updates 2.4 MiB alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 copr_base 331.3 KiB authselect x86_64 1.5.0-8.fc41 fedora 157.6 KiB authselect-libs x86_64 1.5.0-8.fc41 fedora 822.2 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.1-2.fc41 fedora 27.5 MiB build-reproducibility-srpm-macros noarch 0.3.6-3.fc41 updates 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc41 fedora 2.4 MiB coreutils-common x86_64 9.5-11.fc41 updates 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20241029-1.git8baf557.fc41 updates 136.9 KiB curl x86_64 8.9.1-2.fc41 fedora 796.2 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.1-1.fc41 updates 199.8 KiB dwz x86_64 0.15-8.fc41 fedora 298.9 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils x86_64 0.192-6.fc41 updates 2.7 MiB elfutils-debuginfod-client x86_64 0.192-6.fc41 updates 84.1 KiB elfutils-default-yama-scope noarch 0.192-6.fc41 updates 1.8 KiB elfutils-libelf x86_64 0.192-6.fc41 updates 1.2 MiB elfutils-libs x86_64 0.192-6.fc41 updates 666.3 KiB fedora-gpg-keys noarch 41-1 fedora 126.4 KiB fedora-release noarch 41-27 updates 0.0 B fedora-release-identity-basic noarch 41-27 updates 682.0 B fedora-repos noarch 41-1 fedora 4.9 KiB file x86_64 5.45-8.fc41 copr_base 103.5 KiB file-libs x86_64 5.45-8.fc41 copr_base 9.9 MiB filesystem x86_64 3.18-23.fc41 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.2-3.fc41 updates 13.0 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.1-2.fc41 fedora 747.0 B glibc x86_64 2.40-11.fc41 updates 6.7 MiB glibc-common x86_64 2.40-11.fc41 updates 1.0 MiB glibc-gconv-extra x86_64 2.40-11.fc41 updates 8.0 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB json-c x86_64 0.17-4.fc41 fedora 82.4 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-3.fc41 updates 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.4-4.fc41 updates 926.6 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.2-8.fc41 copr_base 262.5 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.70-4.fc41 fedora 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-6.fc41 fedora 67.2 KiB libcurl x86_64 8.9.1-2.fc41 fedora 818.1 KiB libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.2-8.fc41 copr_base 362.9 KiB libffi x86_64 3.4.6-3.fc41 fedora 86.4 KiB libgcc x86_64 14.2.1-3.fc41 fedora 274.6 KiB libgomp x86_64 14.2.1-3.fc41 fedora 523.5 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.2-8.fc41 copr_base 351.8 KiB libnghttp2 x86_64 1.62.1-2.fc41 fedora 166.1 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc41 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-7.fc41 copr_base 181.0 KiB libsemanage x86_64 3.7-4.fc41 copr_base 297.5 KiB libsepol x86_64 3.7-2.fc41 fedora 817.8 KiB libsmartcols x86_64 2.40.2-8.fc41 copr_base 180.4 KiB libssh x86_64 0.10.6-8.fc41 fedora 513.3 KiB libssh-config noarch 0.10.6-8.fc41 fedora 277.0 B libstdc++ x86_64 14.2.1-3.fc41 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB libtirpc x86_64 1.3.6-1.fc41 updates 202.7 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libuuid x86_64 2.40.2-8.fc41 copr_base 41.4 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.36-10.fc41 updates 271.4 KiB libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.6-6.fc41 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-5.fc41 fedora 644.2 KiB openssl-libs x86_64 1:3.2.2-9.fc41 fedora 7.8 MiB p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.6.1-6.fc41 updates 1.8 MiB pam-libs x86_64 1.6.1-6.fc41 updates 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc41 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc41 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc41 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.0-1.fc41 updates 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc41 fedora 500.0 B qt6-srpm-macros noarch 6.8.0-1.fc41 updates 456.0 B readline x86_64 8.2-10.fc41 fedora 493.2 KiB rpm x86_64 4.20.0-1.fc41 copr_base 3.1 MiB rpm-build-libs x86_64 4.20.0-1.fc41 copr_base 206.7 KiB rpm-libs x86_64 4.20.0-1.fc41 copr_base 725.9 KiB rpm-sequoia x86_64 1.7.0-2.fc41 fedora 2.4 MiB rust-srpm-macros noarch 26.3-3.fc41 copr_base 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc41 fedora 1.4 MiB systemd-libs x86_64 256.8-1.fc41 updates 2.0 MiB util-linux-core x86_64 2.40.2-8.fc41 copr_base 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc41 fedora 88.4 KiB xz-libs x86_64 1:5.6.2-2.fc41 fedora 214.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.7-3.fc41 fedora 134.0 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation, 181 MiB extra will be used (install 181 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.x86_64 100% | 324.2 KiB/s | 52.5 KiB | 00m00s [ 2/153] cpio-0:2.15-2.fc41.x86_64 100% | 1.4 MiB/s | 291.8 KiB | 00m00s [ 3/153] diffutils-0:3.10-8.fc41.x86_6 100% | 3.7 MiB/s | 405.4 KiB | 00m00s [ 4/153] bash-0:5.2.32-1.fc41.x86_64 100% | 6.4 MiB/s | 1.8 MiB | 00m00s [ 5/153] findutils-1:4.10.0-4.fc41.x86 100% | 6.8 MiB/s | 548.5 KiB | 00m00s [ 6/153] grep-0:3.11-9.fc41.x86_64 100% | 5.2 MiB/s | 299.7 KiB | 00m00s [ 7/153] gzip-0:1.13-2.fc41.x86_64 100% | 3.3 MiB/s | 170.2 KiB | 00m00s [ 8/153] info-0:7.1-3.fc41.x86_64 100% | 2.9 MiB/s | 182.5 KiB | 00m00s [ 9/153] patch-0:2.7.6-25.fc41.x86_64 100% | 4.3 MiB/s | 131.0 KiB | 00m00s [ 10/153] redhat-rpm-config-0:293-1.fc4 100% | 3.1 MiB/s | 82.0 KiB | 00m00s [ 11/153] sed-0:4.9-3.fc41.x86_64 100% | 6.1 MiB/s | 317.7 KiB | 00m00s [ 12/153] tar-2:1.35-4.fc41.x86_64 100% | 11.5 MiB/s | 860.7 KiB | 00m00s [ 13/153] unzip-0:6.0-64.fc41.x86_64 100% | 5.5 MiB/s | 184.9 KiB | 00m00s [ 14/153] shadow-utils-2:4.15.1-12.fc41 100% | 13.9 MiB/s | 1.3 MiB | 00m00s [ 15/153] which-0:2.21-42.fc41.x86_64 100% | 1.6 MiB/s | 41.6 KiB | 00m00s [ 16/153] xz-1:5.6.2-2.fc41.x86_64 100% | 5.6 MiB/s | 471.5 KiB | 00m00s [ 17/153] gawk-0:5.3.0-4.fc41.x86_64 100% | 16.0 MiB/s | 1.1 MiB | 00m00s [ 18/153] fedora-release-common-0:41-27 100% | 112.9 KiB/s | 23.4 KiB | 00m00s [ 19/153] rpm-build-0:4.20.0-1.fc41.x86 100% | 1.9 MiB/s | 75.8 KiB | 00m00s [ 20/153] util-linux-0:2.40.2-8.fc41.x8 100% | 24.9 MiB/s | 1.1 MiB | 00m00s [ 21/153] filesystem-0:3.18-23.fc41.x86 100% | 19.1 MiB/s | 1.1 MiB | 00m00s [ 22/153] ncurses-libs-0:6.5-2.20240629 100% | 8.2 MiB/s | 334.0 KiB | 00m00s [ 23/153] glibc-minimal-langpack-0:2.40 100% | 375.4 KiB/s | 110.7 KiB | 00m00s [ 24/153] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 956.1 KiB/s | 41.1 KiB | 00m00s [ 25/153] coreutils-0:9.5-11.fc41.x86_6 100% | 2.4 MiB/s | 1.1 MiB | 00m00s [ 26/153] ed-0:1.20.2-2.fc41.x86_64 100% | 3.1 MiB/s | 81.8 KiB | 00m00s [ 27/153] pcre2-0:10.44-1.fc41.1.x86_64 100% | 4.6 MiB/s | 243.1 KiB | 00m00s [ 28/153] ansible-srpm-macros-0:1-16.fc 100% | 831.0 KiB/s | 20.8 KiB | 00m00s [ 29/153] dwz-0:0.15-8.fc41.x86_64 100% | 5.0 MiB/s | 138.9 KiB | 00m00s [ 30/153] libattr-0:2.5.2-4.fc41.x86_64 100% | 403.8 KiB/s | 18.2 KiB | 00m00s [ 31/153] efi-srpm-macros-0:5-12.fc41.n 100% | 895.0 KiB/s | 22.4 KiB | 00m00s [ 32/153] fonts-srpm-macros-1:2.0.5-17. 100% | 1.1 MiB/s | 27.0 KiB | 00m00s [ 33/153] forge-srpm-macros-0:0.3.2-1.f 100% | 788.1 KiB/s | 19.7 KiB | 00m00s [ 34/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 318.5 KiB/s | 8.0 KiB | 00m00s [ 35/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 362.3 KiB/s | 9.1 KiB | 00m00s [ 36/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 358.1 KiB/s | 9.0 KiB | 00m00s [ 37/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 1.1 MiB/s | 28.0 KiB | 00m00s [ 38/153] kernel-srpm-macros-0:1.0-24.f 100% | 394.7 KiB/s | 9.9 KiB | 00m00s [ 39/153] lua-srpm-macros-0:1-14.fc41.n 100% | 355.2 KiB/s | 8.9 KiB | 00m00s [ 40/153] ocaml-srpm-macros-0:10-3.fc41 100% | 368.0 KiB/s | 9.2 KiB | 00m00s [ 41/153] openblas-srpm-macros-0:2-18.f 100% | 308.6 KiB/s | 7.7 KiB | 00m00s [ 42/153] package-notes-srpm-macros-0:0 100% | 393.2 KiB/s | 9.8 KiB | 00m00s [ 43/153] perl-srpm-macros-0:1-56.fc41. 100% | 340.5 KiB/s | 8.5 KiB | 00m00s [ 44/153] python-srpm-macros-0:3.13-3.f 100% | 948.9 KiB/s | 23.7 KiB | 00m00s [ 45/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 355.9 KiB/s | 8.9 KiB | 00m00s [ 46/153] zig-srpm-macros-0:1-3.fc41.no 100% | 324.9 KiB/s | 8.1 KiB | 00m00s [ 47/153] zip-0:3.0-41.fc41.x86_64 100% | 8.6 MiB/s | 264.8 KiB | 00m00s [ 48/153] libacl-0:2.3.2-2.fc41.x86_64 100% | 521.3 KiB/s | 24.5 KiB | 00m00s [ 49/153] libeconf-0:0.6.2-3.fc41.x86_6 100% | 684.6 KiB/s | 32.2 KiB | 00m00s [ 50/153] setup-0:2.15.0-5.fc41.noarch 100% | 3.0 MiB/s | 154.4 KiB | 00m00s [ 51/153] xz-libs-1:5.6.2-2.fc41.x86_64 100% | 2.4 MiB/s | 111.8 KiB | 00m00s [ 52/153] libcap-0:2.70-4.fc41.x86_64 100% | 3.1 MiB/s | 86.7 KiB | 00m00s [ 53/153] gmp-1:6.3.0-2.fc41.x86_64 100% | 6.1 MiB/s | 318.0 KiB | 00m00s [ 54/153] fedora-repos-0:41-1.noarch 100% | 225.2 KiB/s | 9.2 KiB | 00m00s [ 55/153] coreutils-common-0:9.5-11.fc4 100% | 16.6 MiB/s | 2.1 MiB | 00m00s [ 56/153] openssl-libs-1:3.2.2-9.fc41.x 100% | 25.4 MiB/s | 2.3 MiB | 00m00s [ 57/153] mpfr-0:4.2.1-5.fc41.x86_64 100% | 7.2 MiB/s | 346.3 KiB | 00m00s [ 58/153] readline-0:8.2-10.fc41.x86_64 100% | 4.1 MiB/s | 213.2 KiB | 00m00s [ 59/153] glibc-common-0:2.40-11.fc41.x 100% | 7.1 MiB/s | 399.4 KiB | 00m00s [ 60/153] popt-0:1.19-7.fc41.x86_64 100% | 1.1 MiB/s | 65.9 KiB | 00m00s [ 61/153] zstd-0:1.5.6-2.fc41.x86_64 100% | 8.5 MiB/s | 481.5 KiB | 00m00s [ 62/153] zlib-ng-compat-0:2.1.7-3.fc41 100% | 2.7 MiB/s | 77.7 KiB | 00m00s [ 63/153] libblkid-0:2.40.2-8.fc41.x86_ 100% | 8.8 MiB/s | 125.5 KiB | 00m00s [ 64/153] libfdisk-0:2.40.2-8.fc41.x86_ 100% | 13.0 MiB/s | 159.9 KiB | 00m00s [ 65/153] libmount-0:2.40.2-8.fc41.x86_ 100% | 12.7 MiB/s | 156.2 KiB | 00m00s [ 66/153] libsmartcols-0:2.40.2-8.fc41. 100% | 6.9 MiB/s | 84.4 KiB | 00m00s [ 67/153] libuuid-0:2.40.2-8.fc41.x86_6 100% | 3.2 MiB/s | 29.5 KiB | 00m00s [ 68/153] util-linux-core-0:2.40.2-8.fc 100% | 34.0 MiB/s | 521.5 KiB | 00m00s [ 69/153] libgcc-0:14.2.1-3.fc41.x86_64 100% | 3.3 MiB/s | 133.3 KiB | 00m00s [ 70/153] ca-certificates-0:2024.2.69_v 100% | 12.5 MiB/s | 871.2 KiB | 00m00s [ 71/153] fedora-gpg-keys-0:41-1.noarch 100% | 3.0 MiB/s | 133.7 KiB | 00m00s [ 72/153] libstdc++-0:14.2.1-3.fc41.x86 100% | 12.7 MiB/s | 887.8 KiB | 00m00s [ 73/153] lz4-libs-0:1.10.0-1.fc41.x86_ 100% | 1.4 MiB/s | 70.7 KiB | 00m00s [ 74/153] glibc-0:2.40-11.fc41.x86_64 100% | 27.1 MiB/s | 2.2 MiB | 00m00s [ 75/153] glibc-gconv-extra-0:2.40-11.f 100% | 23.4 MiB/s | 1.7 MiB | 00m00s [ 76/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 318.3 KiB/s | 149.9 KiB | 00m00s [ 77/153] libxcrypt-0:4.4.36-10.fc41.x8 100% | 2.4 MiB/s | 118.9 KiB | 00m00s [ 78/153] basesystem-0:11-21.fc41.noarc 100% | 72.3 KiB/s | 7.4 KiB | 00m00s [ 79/153] libselinux-0:3.7-7.fc41.x86_6 100% | 8.7 MiB/s | 89.2 KiB | 00m00s [ 80/153] ncurses-base-0:6.5-2.20240629 100% | 153.9 KiB/s | 88.3 KiB | 00m01s [ 81/153] systemd-libs-0:256.8-1.fc41.x 100% | 12.5 MiB/s | 732.1 KiB | 00m00s [ 82/153] libsepol-0:3.7-2.fc41.x86_64 100% | 7.8 MiB/s | 342.2 KiB | 00m00s [ 83/153] alternatives-0:1.30-1.fc41.x8 100% | 1.3 MiB/s | 42.5 KiB | 00m00s [ 84/153] jansson-0:2.13.1-10.fc41.x86_ 100% | 1.7 MiB/s | 44.4 KiB | 00m00s [ 85/153] authselect-libs-0:1.5.0-8.fc4 100% | 2.5 MiB/s | 218.0 KiB | 00m00s [ 86/153] binutils-0:2.43.1-2.fc41.x86_ 100% | 56.6 MiB/s | 6.5 MiB | 00m00s [ 87/153] pam-0:1.6.1-6.fc41.x86_64 100% | 9.8 MiB/s | 554.4 KiB | 00m00s [ 88/153] authselect-0:1.5.0-8.fc41.x86 100% | 2.7 MiB/s | 145.8 KiB | 00m00s [ 89/153] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 1.1 MiB/s | 56.3 KiB | 00m00s [ 90/153] pam-libs-0:1.6.1-6.fc41.x86_6 100% | 535.1 KiB/s | 57.3 KiB | 00m00s [ 91/153] audit-libs-0:4.0.2-1.fc41.x86 100% | 12.4 MiB/s | 126.7 KiB | 00m00s [ 92/153] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 643.7 KiB/s | 29.6 KiB | 00m00s [ 93/153] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 794.2 KiB/s | 32.6 KiB | 00m00s [ 94/153] debugedit-0:5.1-1.fc41.x86_64 100% | 1.6 MiB/s | 78.1 KiB | 00m00s [ 95/153] elfutils-debuginfod-client-0: 100% | 757.6 KiB/s | 46.2 KiB | 00m00s [ 96/153] elfutils-libelf-0:0.192-6.fc4 100% | 4.1 MiB/s | 207.4 KiB | 00m00s [ 97/153] json-c-0:0.17-4.fc41.x86_64 100% | 1.1 MiB/s | 44.0 KiB | 00m00s [ 98/153] elfutils-libs-0:0.192-6.fc41. 100% | 5.0 MiB/s | 261.9 KiB | 00m00s [ 99/153] libzstd-0:1.5.6-2.fc41.x86_64 100% | 6.2 MiB/s | 310.3 KiB | 00m00s [100/153] file-0:5.45-8.fc41.x86_64 100% | 5.3 MiB/s | 49.2 KiB | 00m00s [101/153] libarchive-0:3.7.4-4.fc41.x86 100% | 7.5 MiB/s | 409.1 KiB | 00m00s [102/153] file-libs-0:5.45-8.fc41.x86_6 100% | 43.8 MiB/s | 762.6 KiB | 00m00s [103/153] elfutils-0:0.192-6.fc41.x86_6 100% | 2.8 MiB/s | 547.2 KiB | 00m00s [104/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 400.4 KiB/s | 10.0 KiB | 00m00s [105/153] pkgconf-0:2.3.0-1.fc41.x86_64 100% | 1.8 MiB/s | 45.2 KiB | 00m00s [106/153] pkgconf-m4-0:2.3.0-1.fc41.noa 100% | 572.9 KiB/s | 14.3 KiB | 00m00s [107/153] rpm-0:4.20.0-1.fc41.x86_64 100% | 33.8 MiB/s | 519.8 KiB | 00m00s [108/153] libpkgconf-0:2.3.0-1.fc41.x86 100% | 1.3 MiB/s | 38.5 KiB | 00m00s [109/153] rpm-build-libs-0:4.20.0-1.fc4 100% | 9.7 MiB/s | 99.1 KiB | 00m00s [110/153] curl-0:8.9.1-2.fc41.x86_64 100% | 6.2 MiB/s | 315.1 KiB | 00m00s [111/153] lua-libs-0:5.4.6-6.fc41.x86_6 100% | 3.4 MiB/s | 132.0 KiB | 00m00s [112/153] libgomp-0:14.2.1-3.fc41.x86_6 100% | 7.1 MiB/s | 354.1 KiB | 00m00s [113/153] rpm-libs-0:4.20.0-1.fc41.x86_ 100% | 16.8 MiB/s | 309.9 KiB | 00m00s [114/153] libsemanage-0:3.7-4.fc41.x86_ 100% | 10.5 MiB/s | 117.9 KiB | 00m00s [115/153] sqlite-libs-0:3.46.1-1.fc41.x 100% | 12.9 MiB/s | 712.7 KiB | 00m00s [116/153] rpm-sequoia-0:1.7.0-2.fc41.x8 100% | 15.3 MiB/s | 892.5 KiB | 00m00s [117/153] build-reproducibility-srpm-ma 100% | 196.8 KiB/s | 10.8 KiB | 00m00s [118/153] pyproject-srpm-macros-0:1.16. 100% | 261.3 KiB/s | 13.6 KiB | 00m00s [119/153] rust-srpm-macros-0:26.3-3.fc4 100% | 1.4 MiB/s | 12.7 KiB | 00m00s [120/153] qt6-srpm-macros-0:6.8.0-1.fc4 100% | 188.5 KiB/s | 9.0 KiB | 00m00s [121/153] add-determinism-0:0.3.6-3.fc4 100% | 7.8 MiB/s | 875.9 KiB | 00m00s [122/153] libtirpc-0:1.3.6-1.fc41.x86_6 100% | 1.9 MiB/s | 94.4 KiB | 00m00s [123/153] crypto-policies-0:20241029-1. 100% | 1.3 MiB/s | 97.5 KiB | 00m00s [124/153] libcom_err-0:1.47.1-6.fc41.x8 100% | 648.0 KiB/s | 26.6 KiB | 00m00s [125/153] libffi-0:3.4.6-3.fc41.x86_64 100% | 998.6 KiB/s | 39.9 KiB | 00m00s [126/153] libtasn1-0:4.19.0-9.fc41.x86_ 100% | 1.4 MiB/s | 74.2 KiB | 00m00s [127/153] p11-kit-0:0.25.5-3.fc41.x86_6 100% | 7.5 MiB/s | 490.9 KiB | 00m00s [128/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 2.5 MiB/s | 132.1 KiB | 00m00s [129/153] gdbm-1:1.23-7.fc41.x86_64 100% | 3.4 MiB/s | 151.8 KiB | 00m00s [130/153] libpwquality-0:1.4.5-11.fc41. 100% | 2.2 MiB/s | 119.0 KiB | 00m00s [131/153] cracklib-0:2.9.11-6.fc41.x86_ 100% | 2.0 MiB/s | 92.1 KiB | 00m00s [132/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 736.0 KiB/s | 31.6 KiB | 00m00s [133/153] krb5-libs-0:1.21.3-3.fc41.x86 100% | 13.0 MiB/s | 757.9 KiB | 00m00s [134/153] libverto-0:0.3.2-9.fc41.x86_6 100% | 413.8 KiB/s | 20.7 KiB | 00m00s [135/153] libxml2-0:2.12.8-2.fc41.x86_6 100% | 15.3 MiB/s | 687.3 KiB | 00m00s [136/153] elfutils-default-yama-scope-0 100% | 256.9 KiB/s | 12.3 KiB | 00m00s [137/153] xxhash-libs-0:0.8.2-4.fc41.x8 100% | 1.4 MiB/s | 36.8 KiB | 00m00s [138/153] fedora-release-0:41-27.noarch 100% | 261.8 KiB/s | 12.6 KiB | 00m00s [139/153] libcurl-0:8.9.1-2.fc41.x86_64 100% | 7.7 MiB/s | 361.9 KiB | 00m00s [140/153] libidn2-0:2.3.7-2.fc41.x86_64 100% | 2.8 MiB/s | 118.4 KiB | 00m00s [141/153] libnghttp2-0:1.62.1-2.fc41.x8 100% | 1.4 MiB/s | 76.6 KiB | 00m00s [142/153] gdb-minimal-0:15.2-3.fc41.x86 100% | 24.4 MiB/s | 4.3 MiB | 00m00s [143/153] libpsl-0:0.21.5-4.fc41.x86_64 100% | 1.0 MiB/s | 64.1 KiB | 00m00s [144/153] libssh-0:0.10.6-8.fc41.x86_64 100% | 4.4 MiB/s | 211.8 KiB | 00m00s [145/153] openldap-0:2.6.8-5.fc41.x86_6 100% | 5.4 MiB/s | 255.6 KiB | 00m00s [146/153] publicsuffix-list-dafsa-0:202 100% | 2.2 MiB/s | 58.3 KiB | 00m00s [147/153] libunistring-0:1.1-8.fc41.x86 100% | 10.4 MiB/s | 544.8 KiB | 00m00s [148/153] libssh-config-0:0.10.6-8.fc41 100% | 369.6 KiB/s | 9.2 KiB | 00m00s [149/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 18.1 MiB/s | 794.9 KiB | 00m00s [150/153] libevent-0:2.1.12-14.fc41.x86 100% | 6.3 MiB/s | 257.5 KiB | 00m00s [151/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 547.5 KiB/s | 35.6 KiB | 00m00s [152/153] fedora-release-identity-basic 100% | 278.5 KiB/s | 13.4 KiB | 00m00s [153/153] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 5.8 MiB/s | 340.5 KiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 16.3 MiB/s | 53.1 MiB | 00m03s Running transaction Importing PGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. [ 1/155] Verify package files 100% | 739.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Finished pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> [RPM] /var/lib/mock/fedora-41-x86_64-1732210602.760077/root/var/cache/dnf/co [ 2/155] Prepare transaction 100% | 1.8 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-3. 100% | 134.9 MiB/s | 276.3 KiB | 00m00s [ 4/155] Installing fedora-release-ide 100% | 918.0 KiB/s | 940.0 B | 00m00s [ 5/155] Installing fedora-gpg-keys-0: 100% | 18.7 MiB/s | 172.2 KiB | 00m00s [ 6/155] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 7/155] Installing fedora-release-com 100% | 11.7 MiB/s | 23.9 KiB | 00m00s [ 8/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 9/155] Installing setup-0:2.15.0-5.f 100% | 47.3 MiB/s | 726.1 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 10/155] Installing filesystem-0:3.18- 100% | 1.6 MiB/s | 212.5 KiB | 00m00s [ 11/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 13/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 14/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 15/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 16/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 17/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 18/155] Installing ncurses-base-0:6.5 100% | 34.3 MiB/s | 351.7 KiB | 00m00s [ 19/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 20/155] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB | 00m00s [ 21/155] Installing glibc-0:2.40-11.fc 100% | 215.4 MiB/s | 6.7 MiB | 00m00s [ 22/155] Installing bash-0:5.2.32-1.fc 100% | 281.7 MiB/s | 8.2 MiB | 00m00s [ 23/155] Installing glibc-common-0:2.4 100% | 116.3 MiB/s | 1.0 MiB | 00m00s [ 24/155] Installing glibc-gconv-extra- 100% | 144.6 MiB/s | 8.1 MiB | 00m00s [ 25/155] Installing zlib-ng-compat-0:2 100% | 131.6 MiB/s | 134.8 KiB | 00m00s [ 26/155] Installing bzip2-libs-0:1.0.8 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [ 27/155] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s [ 28/155] Installing readline-0:8.2-10. 100% | 241.8 MiB/s | 495.3 KiB | 00m00s [ 29/155] Installing popt-0:1.19-7.fc41 100% | 35.0 MiB/s | 143.5 KiB | 00m00s [ 30/155] Installing libuuid-0:2.40.2-8 100% | 41.5 MiB/s | 42.5 KiB | 00m00s [ 31/155] Installing libblkid-0:2.40.2- 100% | 128.7 MiB/s | 263.6 KiB | 00m00s [ 32/155] Installing libattr-0:2.5.2-4. 100% | 28.8 MiB/s | 29.5 KiB | 00m00s [ 33/155] Installing libacl-0:2.3.2-2.f 100% | 39.8 MiB/s | 40.7 KiB | 00m00s [ 34/155] Installing gmp-1:6.3.0-2.fc41 100% | 198.6 MiB/s | 813.7 KiB | 00m00s [ 35/155] Installing libstdc++-0:14.2.1 100% | 276.6 MiB/s | 2.8 MiB | 00m00s [ 36/155] Installing libxcrypt-0:4.4.36 100% | 133.9 MiB/s | 274.1 KiB | 00m00s [ 37/155] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.2 KiB | 00m00s [ 38/155] Installing elfutils-libelf-0: 100% | 292.5 MiB/s | 1.2 MiB | 00m00s [ 39/155] Installing libeconf-0:0.6.2-3 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [ 40/155] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s [ 41/155] Installing dwz-0:0.15-8.fc41. 100% | 146.6 MiB/s | 300.3 KiB | 00m00s [ 42/155] Installing mpfr-0:4.2.1-5.fc4 100% | 203.5 MiB/s | 833.7 KiB | 00m00s [ 43/155] Installing gawk-0:5.3.0-4.fc4 100% | 173.2 MiB/s | 1.7 MiB | 00m00s [ 44/155] Installing unzip-0:6.0-64.fc4 100% | 127.0 MiB/s | 390.3 KiB | 00m00s [ 45/155] Installing file-libs-0:5.45-8 100% | 473.0 MiB/s | 9.9 MiB | 00m00s [ 46/155] Installing file-0:5.45-8.fc41 100% | 7.3 MiB/s | 105.0 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20241029-1.git8baf557.fc41. >>> Finished pre-install scriptlet: crypto-policies-0:20241029-1.git8baf557.fc41 >>> Scriptlet output: >>> /var/tmp/rpm-tmp.LC7CAq: line 2: rm: command not found >>> [ 47/155] Installing crypto-policies-0: 100% | 14.5 MiB/s | 163.3 KiB | 00m00s [ 48/155] Installing pcre2-0:10.44-1.fc 100% | 213.2 MiB/s | 654.9 KiB | 00m00s [ 49/155] Installing grep-0:3.11-9.fc41 100% | 111.5 MiB/s | 1.0 MiB | 00m00s [ 50/155] Installing xz-1:5.6.2-2.fc41. 100% | 109.5 MiB/s | 1.2 MiB | 00m00s [ 51/155] Installing libsmartcols-0:2.4 100% | 177.2 MiB/s | 181.5 KiB | 00m00s [ 52/155] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s [ 53/155] Installing libsepol-0:3.7-2.f 100% | 199.9 MiB/s | 818.8 KiB | 00m00s [ 54/155] Installing libselinux-0:3.7-7 100% | 89.0 MiB/s | 182.3 KiB | 00m00s [ 55/155] Installing sed-0:4.9-3.fc41.x 100% | 106.2 MiB/s | 869.7 KiB | 00m00s [ 56/155] Installing findutils-1:4.10.0 100% | 168.9 MiB/s | 1.9 MiB | 00m00s [ 57/155] Installing libmount-0:2.40.2- 100% | 172.3 MiB/s | 352.9 KiB | 00m00s [ 58/155] Installing alternatives-0:1.3 100% | 66.3 MiB/s | 67.9 KiB | 00m00s [ 59/155] Installing libcap-ng-0:0.8.5- 100% | 69.4 MiB/s | 71.0 KiB | 00m00s [ 60/155] Installing audit-libs-0:4.0.2 100% | 162.8 MiB/s | 333.4 KiB | 00m00s [ 61/155] Installing pam-libs-0:1.6.1-6 100% | 69.0 MiB/s | 141.2 KiB | 00m00s [ 62/155] Installing libcap-0:2.70-4.fc 100% | 73.3 MiB/s | 225.2 KiB | 00m00s [ 63/155] Installing systemd-libs-0:256 100% | 169.5 MiB/s | 2.0 MiB | 00m00s [ 64/155] Installing lua-libs-0:5.4.6-6 100% | 139.8 MiB/s | 286.2 KiB | 00m00s [ 65/155] Installing libcom_err-0:1.47. 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 66/155] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s [ 67/155] Installing libtasn1-0:4.19.0- 100% | 86.7 MiB/s | 177.5 KiB | 00m00s [ 68/155] Installing p11-kit-0:0.25.5-3 100% | 138.0 MiB/s | 2.2 MiB | 00m00s [ 69/155] Installing libunistring-0:1.1 100% | 247.2 MiB/s | 1.7 MiB | 00m00s [ 70/155] Installing libidn2-0:2.3.7-2. 100% | 65.4 MiB/s | 335.1 KiB | 00m00s [ 71/155] Installing libpsl-0:0.21.5-4. 100% | 79.7 MiB/s | 81.7 KiB | 00m00s [ 72/155] Installing p11-kit-trust-0:0. 100% | 21.3 MiB/s | 393.1 KiB | 00m00s [ 73/155] Installing util-linux-core-0: 100% | 108.6 MiB/s | 1.5 MiB | 00m00s [ 74/155] Installing libsemanage-0:3.7- 100% | 73.1 MiB/s | 299.3 KiB | 00m00s [ 75/155] Installing shadow-utils-2:4.1 100% | 104.1 MiB/s | 4.2 MiB | 00m00s [ 76/155] Installing tar-2:1.35-4.fc41. 100% | 211.3 MiB/s | 3.0 MiB | 00m00s [ 77/155] Installing zstd-0:1.5.6-2.fc4 100% | 241.6 MiB/s | 1.7 MiB | 00m00s [ 78/155] Installing zip-0:3.0-41.fc41. 100% | 138.1 MiB/s | 707.1 KiB | 00m00s [ 79/155] Installing gdbm-1:1.23-7.fc41 100% | 91.0 MiB/s | 465.8 KiB | 00m00s [ 80/155] Installing cyrus-sasl-lib-0:2 100% | 230.6 MiB/s | 2.3 MiB | 00m00s [ 81/155] Installing libfdisk-0:2.40.2- 100% | 118.4 MiB/s | 363.9 KiB | 00m00s [ 82/155] Installing libxml2-0:2.12.8-2 100% | 214.0 MiB/s | 1.7 MiB | 00m00s [ 83/155] Installing bzip2-0:1.0.8-19.f 100% | 48.9 MiB/s | 100.2 KiB | 00m00s [ 84/155] Installing sqlite-libs-0:3.46 100% | 238.2 MiB/s | 1.4 MiB | 00m00s [ 85/155] Installing add-determinism-0: 100% | 261.8 MiB/s | 2.4 MiB | 00m00s [ 86/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 87/155] Installing ed-0:1.20.2-2.fc41 100% | 72.8 MiB/s | 149.2 KiB | 00m00s [ 88/155] Installing patch-0:2.7.6-25.f 100% | 43.7 MiB/s | 268.2 KiB | 00m00s [ 89/155] Installing elfutils-default-y 100% | 157.2 KiB/s | 2.0 KiB | 00m00s [ 90/155] Installing elfutils-libs-0:0. 100% | 130.5 MiB/s | 668.1 KiB | 00m00s [ 91/155] Installing cpio-0:2.15-2.fc41 100% | 137.5 MiB/s | 1.1 MiB | 00m00s [ 92/155] Installing diffutils-0:3.10-8 100% | 144.6 MiB/s | 1.6 MiB | 00m00s [ 93/155] Installing jansson-0:2.13.1-1 100% | 87.6 MiB/s | 89.7 KiB | 00m00s [ 94/155] Installing json-c-0:0.17-4.fc 100% | 81.7 MiB/s | 83.6 KiB | 00m00s [ 95/155] Installing libpkgconf-0:2.3.0 100% | 77.5 MiB/s | 79.3 KiB | 00m00s [ 96/155] Installing pkgconf-0:2.3.0-1. 100% | 44.5 MiB/s | 91.1 KiB | 00m00s [ 97/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [ 98/155] Installing libgomp-0:14.2.1-3 100% | 170.8 MiB/s | 524.8 KiB | 00m00s [ 99/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [100/155] Installing libverto-0:0.3.2-9 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [101/155] Installing xxhash-libs-0:0.8. 100% | 87.7 MiB/s | 89.8 KiB | 00m00s [102/155] Installing libnghttp2-0:1.62. 100% | 163.2 MiB/s | 167.1 KiB | 00m00s [103/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [104/155] Installing libbrotli-0:1.1.0- 100% | 164.0 MiB/s | 839.9 KiB | 00m00s [105/155] Installing coreutils-common-0 100% | 219.4 MiB/s | 11.2 MiB | 00m00s [106/155] Installing openssl-libs-1:3.2 100% | 270.0 MiB/s | 7.8 MiB | 00m00s [107/155] Installing coreutils-0:9.5-11 100% | 132.7 MiB/s | 5.7 MiB | 00m00s [108/155] Installing ca-certificates-0: 100% | 2.3 MiB/s | 2.4 MiB | 00m01s [109/155] Installing krb5-libs-0:1.21.3 100% | 178.4 MiB/s | 2.3 MiB | 00m00s [110/155] Installing libarchive-0:3.7.4 100% | 226.7 MiB/s | 928.6 KiB | 00m00s [111/155] Installing libtirpc-0:1.3.6-1 100% | 99.8 MiB/s | 204.5 KiB | 00m00s [112/155] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [113/155] Installing authselect-libs-0: 100% | 74.3 MiB/s | 837.2 KiB | 00m00s [114/155] Installing cracklib-0:2.9.11- 100% | 30.6 MiB/s | 250.3 KiB | 00m00s [115/155] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [116/155] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s [117/155] Installing pam-0:1.6.1-6.fc41 100% | 75.1 MiB/s | 1.9 MiB | 00m00s [118/155] Installing libssh-0:0.10.6-8. 100% | 167.8 MiB/s | 515.4 KiB | 00m00s [119/155] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s [120/155] Installing rpm-libs-0:4.20.0- 100% | 236.8 MiB/s | 727.4 KiB | 00m00s [121/155] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s [122/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [123/155] Installing openldap-0:2.6.8-5 100% | 126.6 MiB/s | 648.0 KiB | 00m00s [124/155] Installing libcurl-0:8.9.1-2. 100% | 200.0 MiB/s | 819.2 KiB | 00m00s [125/155] Installing elfutils-debuginfo 100% | 28.1 MiB/s | 86.3 KiB | 00m00s [126/155] Installing binutils-0:2.43.1- 100% | 243.6 MiB/s | 27.5 MiB | 00m00s [127/155] Installing elfutils-0:0.192-6 100% | 191.1 MiB/s | 2.7 MiB | 00m00s [128/155] Installing gdb-minimal-0:15.2 100% | 282.4 MiB/s | 13.0 MiB | 00m00s [129/155] Installing debugedit-0:5.1-1. 100% | 65.9 MiB/s | 202.5 KiB | 00m00s [130/155] Installing curl-0:8.9.1-2.fc4 100% | 31.2 MiB/s | 798.6 KiB | 00m00s [131/155] Installing rpm-0:4.20.0-1.fc4 100% | 78.3 MiB/s | 2.5 MiB | 00m00s [132/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [133/155] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [134/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [144/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 61.9 MiB/s | 190.1 KiB | 00m00s [150/155] Installing rpm-build-0:4.20.0 100% | 49.5 MiB/s | 202.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 80.1 MiB/s | 3.7 MiB | 00m00s [153/155] Installing authselect-0:1.5.0 100% | 39.5 MiB/s | 161.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-3.fc41. 100% | 215.1 KiB/s | 362.2 KiB | 00m02s Warning: skipped PGP checks for 17 packages from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-3.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc41.x86_64 authselect-libs-1.5.0-8.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-1.fc41.x86_64 binutils-2.43.1-2.fc41.x86_64 build-reproducibility-srpm-macros-0.3.6-3.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc41.noarch coreutils-9.5-11.fc41.x86_64 coreutils-common-9.5-11.fc41.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241029-1.git8baf557.fc41.noarch curl-8.9.1-2.fc41.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-1.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.192-6.fc41.x86_64 elfutils-debuginfod-client-0.192-6.fc41.x86_64 elfutils-default-yama-scope-0.192-6.fc41.noarch elfutils-libelf-0.192-6.fc41.x86_64 elfutils-libs-0.192-6.fc41.x86_64 fedora-gpg-keys-41-1.noarch fedora-release-41-27.noarch fedora-release-common-41-27.noarch fedora-release-identity-basic-41-27.noarch fedora-repos-41-1.noarch file-5.45-8.fc41.x86_64 file-libs-5.45-8.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-3.fc41.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-11.fc41.x86_64 glibc-common-2.40-11.fc41.x86_64 glibc-gconv-extra-2.40-11.fc41.x86_64 glibc-minimal-langpack-2.40-11.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 json-c-0.17-4.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-4.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc41.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc41.x86_64 libcurl-8.9.1-2.fc41.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc41.x86_64 libffi-3.4.6-3.fc41.x86_64 libgcc-14.2.1-3.fc41.x86_64 libgomp-14.2.1-3.fc41.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc41.x86_64 libnghttp2-1.62.1-2.fc41.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc41.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-7.fc41.x86_64 libsemanage-3.7-4.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-8.fc41.x86_64 libssh-0.10.6-8.fc41.x86_64 libssh-config-0.10.6-8.fc41.noarch libstdc++-14.2.1-3.fc41.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-1.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc41.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-10.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-9.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc41.x86_64 pam-libs-1.6.1-6.fc41.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc41.x86_64 pkgconf-m4-2.3.0-1.fc41.noarch pkgconf-pkg-config-2.3.0-1.fc41.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc41.noarch qt6-srpm-macros-6.8.0-1.fc41.noarch readline-8.2-10.fc41.x86_64 redhat-rpm-config-293-1.fc41.noarch rpm-4.20.0-1.fc41.x86_64 rpm-build-4.20.0-1.fc41.x86_64 rpm-build-libs-4.20.0-1.fc41.x86_64 rpm-libs-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc41.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-12.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.8-1.fc41.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc41.x86_64 util-linux-core-2.40.2-8.fc41.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-4.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-3.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1732210602.760077/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio/morphio.spec) Config(child) 0 minutes 36 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/morphio-3.4.0-4.fc41.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210602.760077/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210602.760077/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1732210602.760077/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.7.0-1.fc41.x86_64 dnf5-plugins-5.2.7.0-1.fc41.x86_64 Finish: chroot init Start: build phase for morphio-3.4.0-4.fc41.src.rpm Start: build setup for morphio-3.4.0-4.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.src.rpm Updating and loading repositories: updates 100% | 1.0 MiB/s | 29.7 KiB | 00m00s fedora 100% | 947.0 KiB/s | 27.5 KiB | 00m00s Copr repository 100% | 32.7 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-8.fc41 copr_base 143.0 MiB catch2-devel x86_64 2.13.10-5.fc41 fedora 952.8 KiB cmake x86_64 3.30.5-1.fc41 updates 32.5 MiB gcc-c++ x86_64 14.2.1-3.fc41 fedora 38.2 MiB gsl-lite-devel x86_64 0.41.0-5.fc41 fedora 308.1 KiB gulrak-filesystem-devel x86_64 1.5.14-8.fc41 fedora 272.2 KiB hdf5-devel x86_64 1.12.1-20.fc41 fedora 3.9 MiB highfive-devel x86_64 2.10.0-1.fc41 fedora 377.0 KiB lcov noarch 2.0-4.fc41 fedora 930.9 KiB lexertl14-devel x86_64 1:0.1.0^20240506gitbca1359-2.fc41 fedora 573.7 KiB ninja-build x86_64 1.12.1-3.fc41 fedora 432.6 KiB pybind11-devel x86_64 2.13.6-1.fc41 copr_base 847.8 KiB python3-devel x86_64 3.13.0-1.fc41 fedora 1.8 MiB tomcli noarch 0.8.0-1.fc41 fedora 125.7 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB annobin-docs noarch 12.69-1.fc41 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.69-1.fc41 fedora 985.0 KiB boost x86_64 1.83.0-8.fc41 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KiB perl-IO-Socket-IP noarch 0.42-512.fc41 fedora 98.7 KiB perl-IO-Socket-SSL noarch 2.089-1.fc41 fedora 703.3 KiB perl-IPC-Open3 noarch 1.22-512.fc41 updates 22.5 KiB perl-JSON noarch 4.10-6.fc41 fedora 270.5 KiB perl-JSON-XS x86_64 1:4.03-15.fc41 fedora 270.3 KiB perl-LWP-MediaTypes noarch 6.04-19.fc41 fedora 79.0 KiB perl-Locale-Maketext noarch 1.33-512.fc41 fedora 171.3 KiB perl-Locale-Maketext-Simple noarch 1:0.21-512.fc41 updates 12.8 KiB perl-MIME-Base32 noarch 1.303-21.fc41 fedora 30.7 KiB perl-MIME-Base64 x86_64 3.16-511.fc41 fedora 46.1 KiB perl-MRO-Compat noarch 0.15-10.fc41 fedora 43.0 KiB perl-Math-BigInt noarch 1:2.0030.03-3.fc41 fedora 957.7 KiB perl-Math-Complex noarch 1.62-512.fc41 updates 85.0 KiB perl-Module-CoreList noarch 1:5.20241020-1.fc41 updates 1.2 MiB perl-Module-Implementation noarch 0.09-40.fc41 fedora 24.7 KiB perl-Module-Load noarch 1:0.36-511.fc41 fedora 14.9 KiB perl-Module-Load-Conditional noarch 0.74-511.fc41 fedora 28.7 KiB perl-Module-Metadata noarch 1.000038-511.fc41 fedora 67.5 KiB perl-Module-Runtime noarch 0.016-23.fc41 fedora 30.4 KiB perl-Net-SSLeay x86_64 1.94-7.fc41 fedora 1.3 MiB perl-POSIX x86_64 2.20-512.fc41 updates 235.1 KiB perl-Package-Generator noarch 1.106-32.fc41 fedora 29.9 KiB perl-Package-Stash noarch 0.40-8.fc41 fedora 55.9 KiB perl-Package-Stash-XS x86_64 0.30-9.fc41 fedora 68.3 KiB perl-PadWalker x86_64 2.5-15.fc41 fedora 45.1 KiB perl-Params-Check noarch 1:0.38-511.fc41 fedora 27.6 KiB perl-Params-Classify x86_64 0.015-24.fc41 fedora 47.6 KiB perl-Params-Util x86_64 1.102-16.fc41 fedora 54.6 KiB perl-Params-ValidationCompiler noarch 0.31-6.fc41 fedora 91.1 KiB perl-PathTools x86_64 3.91-511.fc41 fedora 180.0 KiB perl-Pod-Escapes noarch 1:1.07-511.fc41 fedora 24.9 KiB perl-Pod-Html noarch 1.35-512.fc41 updates 42.2 KiB perl-Pod-Perldoc noarch 3.28.01-512.fc41 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.45-511.fc41 fedora 560.9 KiB perl-Pod-Usage noarch 4:2.03-511.fc41 fedora 84.8 KiB perl-Ref-Util noarch 0.204-21.fc41 fedora 31.5 KiB perl-Ref-Util-XS x86_64 0.117-24.fc41 fedora 42.2 KiB perl-Role-Tiny noarch 2.002004-12.fc41 fedora 61.7 KiB perl-Scalar-List-Utils x86_64 5:1.68-1.fc41 updates 148.9 KiB perl-SelectSaver noarch 1.02-512.fc41 updates 2.2 KiB perl-Socket x86_64 4:2.038-511.fc41 fedora 124.0 KiB perl-Specio noarch 0.48-7.fc41 fedora 329.7 KiB perl-Storable x86_64 1:3.32-511.fc41 fedora 232.4 KiB perl-Sub-Exporter noarch 0.991-4.fc41 fedora 194.9 KiB perl-Sub-Exporter-Progressive noarch 0.001013-25.fc41 fedora 27.3 KiB perl-Sub-Identify x86_64 0.14-28.fc41 fedora 31.9 KiB perl-Sub-Install noarch 0.929-6.fc41 fedora 35.9 KiB perl-Symbol noarch 1.09-512.fc41 updates 6.8 KiB perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB perl-Time-HiRes x86_64 4:1.9777-511.fc41 fedora 119.9 KiB perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB perl-TimeDate noarch 1:2.33-15.fc41 fedora 95.2 KiB perl-Try-Tiny noarch 0.32-1.fc41 fedora 67.3 KiB perl-Types-Serialiser noarch 1.01-12.fc41 fedora 22.9 KiB perl-URI noarch 5.30-1.fc41 fedora 256.9 KiB perl-Variable-Magic x86_64 0.64-3.fc41 fedora 130.6 KiB perl-XString x86_64 0.005-14.fc41 fedora 37.0 KiB perl-base noarch 2.27-512.fc41 updates 12.5 KiB perl-common-sense x86_64 3.7.5-18.fc41 fedora 47.0 KiB perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB perl-if noarch 0.61.000-512.fc41 updates 5.8 KiB perl-interpreter x86_64 4:5.40.0-512.fc41 updates 122.3 KiB perl-lib x86_64 0.65-512.fc41 updates 8.5 KiB perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB perl-libs x86_64 4:5.40.0-512.fc41 updates 9.9 MiB perl-locale noarch 1.12-512.fc41 updates 6.5 KiB perl-mro x86_64 1.29-512.fc41 updates 45.6 KiB perl-namespace-autoclean noarch 0.29-19.fc41 fedora 41.1 KiB perl-namespace-clean noarch 0.27-27.fc41 fedora 38.7 KiB perl-overload noarch 1.37-512.fc41 updates 71.5 KiB perl-overloading noarch 0.02-512.fc41 updates 4.8 KiB perl-parent noarch 1:0.242-1.fc41 fedora 10.0 KiB perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB perl-vars noarch 1.05-512.fc41 updates 3.9 KiB perl-version x86_64 9:0.99.33-1.fc41 fedora 132.8 KiB perltidy noarch 20240903-1.fc41 fedora 3.9 MiB pyproject-rpm-macros noarch 1.16.0-1.fc41 updates 114.4 KiB python-pip-wheel noarch 24.3.1-1.fc41 copr_base 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3 x86_64 3.13.0-1.fc41 fedora 31.8 KiB python3-click noarch 8.1.7-6.fc41 fedora 1.1 MiB python3-libs x86_64 3.13.0-1.fc41 fedora 40.3 MiB python3-numpy x86_64 1:1.26.4-8.fc41 fedora 43.8 MiB python3-packaging noarch 24.2-2.fc41 copr_base 558.2 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB python3-tomlkit noarch 0.13.2-1.fc41 copr_base 453.7 KiB rav1e-libs x86_64 0.7.1-4.fc41 fedora 3.0 MiB rhash x86_64 1.4.4-2.fc41 fedora 349.9 KiB svt-av1-libs x86_64 2.1.0-2.fc41 fedora 7.1 MiB tomcli+tomlkit noarch 0.8.0-1.fc41 fedora 7.8 KiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB vim-filesystem noarch 2:9.1.866-1.fc41 updates 40.0 B xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB zlib-ng-compat-devel x86_64 2.1.7-3.fc41 fedora 106.8 KiB Transaction Summary: Installing: 269 packages Total size of inbound packages is 189 MiB. Need to download 189 MiB. After this operation, 754 MiB extra will be used (install 754 MiB, remove 0 B). [ 1/269] tomcli-0:0.8.0-1.fc41.noarch 100% | 358.2 KiB/s | 67.3 KiB | 00m00s [ 2/269] highfive-devel-0:2.10.0-1.fc4 100% | 441.3 KiB/s | 98.0 KiB | 00m00s [ 3/269] lcov-0:2.0-4.fc41.noarch 100% | 857.2 KiB/s | 228.0 KiB | 00m00s [ 4/269] catch2-devel-0:2.13.10-5.fc41 100% | 1.8 MiB/s | 204.7 KiB | 00m00s [ 5/269] gulrak-filesystem-devel-0:1.5 100% | 963.4 KiB/s | 59.7 KiB | 00m00s [ 6/269] gsl-lite-devel-0:0.41.0-5.fc4 100% | 1.0 MiB/s | 61.5 KiB | 00m00s [ 7/269] boost-devel-0:1.83.0-8.fc41.x 100% | 35.3 MiB/s | 11.7 MiB | 00m00s [ 8/269] pybind11-devel-0:2.13.6-1.fc4 100% | 1.5 MiB/s | 177.3 KiB | 00m00s [ 9/269] cmake-0:3.30.5-1.fc41.x86_64 100% | 25.8 MiB/s | 10.8 MiB | 00m00s [ 10/269] lexertl14-devel-1:0.1.0^20240 100% | 1.2 MiB/s | 107.0 KiB | 00m00s [ 11/269] hdf5-devel-0:1.12.1-20.fc41.x 100% | 9.4 MiB/s | 1.3 MiB | 00m00s [ 12/269] python3-devel-0:3.13.0-1.fc41 100% | 8.0 MiB/s | 402.5 KiB | 00m00s [ 13/269] ninja-build-0:1.12.1-3.fc41.x 100% | 1.9 MiB/s | 180.0 KiB | 00m00s 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Finish: build setup for morphio-3.4.0-4.fc41.src.rpm Start: rpmbuild morphio-3.4.0-4.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.M5aPu4 + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + test -d /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/rm -rf /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ASIrZZ + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd /builddir/build/BUILD/morphio-3.4.0-build + rm -rf MorphIO-3.4.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MorphIO-3.4.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd MorphIO-3.4.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-them-using-a-random-env-var.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/remove-upstreams-flags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/install-python-shared-object.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Downstream-only-Allow-passing-CMake-defs-through-an-.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pytest-float32.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/use-lib_install_dir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/allow_use_of_external_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/dont_use_cmake_for_finding_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/515.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/512.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rvf 3rdparty/GSL_LITE removed directory '3rdparty/GSL_LITE' + sed -r -i /GSL_LITE/d MANIFEST.in + sed -r -i '/director.*\(.*(gsl-lite|GSL_LITE).*\)/d' 3rdparty/CMakeLists.txt + sed -r -i -e /TARGET_PROPERTY:gsl-lite,INTERFACE_INCLUDE_DIRECTORIES/d -e 's/PUBLIC[[:blank:]]+gsl-lite[[:blank:]]+(PRIVATE)/\1/' src/CMakeLists.txt + grep -ErIl '#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl[">]' . + xargs -r sed -r -i 's@(#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl)([">])@\1-lite\.hpp\2@' + rm -rvf 3rdparty/lexertl + ln -s /usr/include/lexertl 3rdparty/ + find . -type f -name .gitignore -print -delete ./.gitignore ./doc/source/doxygen/.gitignore + tomcli set pyproject.toml lists delitem --type regex --no-first build-system.requires '^(cmake|ninja)$' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.5OqYWJ + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement not satisfied: h5py>=2.9.0 Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement not satisfied: pytest>=6.0 Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Exiting dependency generation pass: all requirements files + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 46.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 947.0 KiB/s | 27.5 KiB | 00m00s updates 100% | 901.1 KiB/s | 29.7 KiB | 00m00s Repositories loaded. Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc41.x86_64" is already installed. Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed. Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed. Package "hdf5-devel-1.12.1-20.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.0-1.fc41.noarch" is already installed. Package "python3-devel-3.13.0-1.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc41.noarch" is already installed. Package "tomcli-0.8.0-1.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-h5py x86_64 3.12.1-3.fc41 copr_base 4.4 MiB python3-pip noarch 24.3.1-1.fc41 copr_base 11.4 MiB python3-pytest noarch 8.3.3-3.fc41 copr_base 20.8 MiB Installing dependencies: liblzf x86_64 3.6-29.fc41 fedora 53.8 KiB python3-cached_property noarch 2.0.1-1.fc41 copr_base 34.8 KiB python3-iniconfig noarch 1.1.1-24.fc41 copr_base 20.6 KiB python3-pluggy noarch 1.5.0-1.fc41 copr_base 193.2 KiB python3-six noarch 1.16.0-24.fc41 copr_base 118.3 KiB Transaction Summary: Installing: 8 packages Total size of inbound packages is 6 MiB. Need to download 6 MiB. After this operation, 37 MiB extra will be used (install 37 MiB, remove 0 B). [1/8] liblzf-0:3.6-29.fc41.x86_64 100% | 350.2 KiB/s | 28.0 KiB | 00m00s [2/8] python3-pip-0:24.3.1-1.fc41.noarc 100% | 24.4 MiB/s | 2.5 MiB | 00m00s [3/8] python3-iniconfig-0:1.1.1-24.fc41 100% | 563.8 KiB/s | 18.6 KiB | 00m00s [4/8] python3-pytest-0:8.3.3-3.fc41.noa 100% | 31.4 MiB/s | 2.0 MiB | 00m00s [5/8] python3-pluggy-0:1.5.0-1.fc41.noa 100% | 4.0 MiB/s | 53.7 KiB | 00m00s [6/8] python3-six-0:1.16.0-24.fc41.noar 100% | 3.7 MiB/s | 41.8 KiB | 00m00s [7/8] python3-h5py-0:3.12.1-3.fc41.x86_ 100% | 6.7 MiB/s | 1.1 MiB | 00m00s [8/8] python3-cached_property-0:2.0.1-1 100% | 475.6 KiB/s | 20.5 KiB | 00m00s -------------------------------------------------------------------------------- [8/8] Total 100% | 26.3 MiB/s | 5.8 MiB | 00m00s Running transaction [ 1/10] Verify package files 100% | 333.0 B/s | 8.0 B | 00m00s [ 2/10] Prepare transaction 100% | 117.0 B/s | 8.0 B | 00m00s [ 3/10] Installing python3-six-0:1.16.0 100% | 58.9 MiB/s | 120.7 KiB | 00m00s [ 4/10] Installing python3-cached_prope 100% | 36.7 MiB/s | 37.6 KiB | 00m00s [ 5/10] Installing python3-pluggy-0:1.5 100% | 64.9 MiB/s | 199.4 KiB | 00m00s [ 6/10] Installing python3-iniconfig-0: 100% | 23.0 MiB/s | 23.6 KiB | 00m00s [ 7/10] Installing liblzf-0:3.6-29.fc41 100% | 27.4 MiB/s | 56.2 KiB | 00m00s [ 8/10] Installing python3-h5py-0:3.12. 100% | 194.2 MiB/s | 4.5 MiB | 00m00s [ 9/10] Installing python3-pytest-0:8.3 100% | 249.8 MiB/s | 21.0 MiB | 00m00s [10/10] Installing python3-pip-0:24.3.1 100% | 89.8 MiB/s | 11.7 MiB | 00m00s Warning: skipped PGP checks for 7 packages from repository: copr_base Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.N68TuB + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.3) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Handling setuptools>=24.2.0 from build-system.requires Requirement not satisfied: setuptools>=24.2.0 Handling wheel from build-system.requires Requirement not satisfied: wheel Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 49.6 KiB/s | 1.5 KiB | 00m00s updates 100% | 1.1 MiB/s | 29.7 KiB | 00m00s fedora 100% | 858.2 KiB/s | 27.5 KiB | 00m00s Repositories loaded. Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc41.x86_64" is already installed. Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed. Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed. Package "hdf5-devel-1.12.1-20.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.0-1.fc41.noarch" is already installed. Package "python3-devel-3.13.0-1.fc41.x86_64" is already installed. Package "python3-h5py-3.12.1-3.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc41.noarch" is already installed. Package "python3-pip-24.3.1-1.fc41.noarch" is already installed. Package "python3-pytest-8.3.3-3.fc41.noarch" is already installed. Package "tomcli-0.8.0-1.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-setuptools noarch 74.1.3-4.fc41 copr_base 8.4 MiB python3-wheel noarch 1:0.44.0-2.fc41 copr_base 523.8 KiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 2 MiB. Need to download 2 MiB. After this operation, 9 MiB extra will be used (install 9 MiB, remove 0 B). [1/2] python3-wheel-1:0.44.0-2.fc41.noa 100% | 2.7 MiB/s | 154.1 KiB | 00m00s [2/2] python3-setuptools-0:74.1.3-4.fc4 100% | 23.8 MiB/s | 1.8 MiB | 00m00s -------------------------------------------------------------------------------- [2/2] Total 100% | 25.8 MiB/s | 2.0 MiB | 00m00s Running transaction [1/4] Verify package files 100% | 250.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 66.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-wheel-1:0.44.0 100% | 53.1 MiB/s | 543.4 KiB | 00m00s [4/4] Installing python3-setuptools-0:7 100% | 78.9 MiB/s | 8.6 MiB | 00m00s Warning: skipped PGP checks for 2 packages from repository: copr_base Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.OB2j04 + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.3) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools_scm from get_requires_for_build_wheel Requirement not satisfied: setuptools_scm Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 947.0 KiB/s | 27.5 KiB | 00m00s Copr repository 100% | 51.2 KiB/s | 1.5 KiB | 00m00s updates 100% | 1.1 MiB/s | 29.7 KiB | 00m00s Repositories loaded. Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc41.x86_64" is already installed. Package Arch Version Repository Size Installing: python3-setuptools_scm noarch 8.1.0-1.fc41 copr_base 320.0 KiB Transaction Summary: Installing: 1 package Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed. Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed. Package "hdf5-devel-1.12.1-20.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.0-1.fc41.noarch" is already installed. Package "python3-devel-3.13.0-1.fc41.x86_64" is already installed. Package "python3-h5py-3.12.1-3.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc41.noarch" is already installed. Package "python3-pip-24.3.1-1.fc41.noarch" is already installed. Package "python3-pytest-8.3.3-3.fc41.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc41.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc41.noarch" is already installed. Package "python3-wheel-1:0.44.0-2.fc41.noarch" is already installed. Package "tomcli-0.8.0-1.fc41.noarch" is already installed. Total size of inbound packages is 102 KiB. Need to download 102 KiB. After this operation, 320 KiB extra will be used (install 320 KiB, remove 0 B). [1/1] python3-setuptools_scm-0:8.1.0-1. 100% | 2.4 MiB/s | 102.0 KiB | 00m00s -------------------------------------------------------------------------------- [1/1] Total 100% | 2.3 MiB/s | 102.0 KiB | 00m00s Running transaction [1/3] Verify package files 100% | 0.0 B/s | 1.0 B | 00m00s [2/3] Prepare transaction 100% | 40.0 B/s | 1.0 B | 00m00s [3/3] Installing python3-setuptools_scm 100% | 7.7 MiB/s | 339.7 KiB | 00m00s Warning: skipped PGP checks for 1 package from repository: copr_base Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.k8Be4x + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.3) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 8.1.0) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating morphio.egg-info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt writing manifest file 'morphio.egg-info/SOURCES.txt' reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/morphio-3.4.0.dist-info' Handling numpy>=1.14.1 from hook generated metadata: Requires-Dist (morphio) Requirement satisfied: numpy>=1.14.1 (installed: numpy 1.26.4) Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (morphio) Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs" + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires + rm -rfv morphio-3.4.0.dist-info/ removed 'morphio-3.4.0.dist-info/top_level.txt' removed 'morphio-3.4.0.dist-info/METADATA' removed 'morphio-3.4.0.dist-info/LICENSE.txt' removed 'morphio-3.4.0.dist-info/AUTHORS.txt' removed directory 'morphio-3.4.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 980.9 KiB/s | 27.5 KiB | 00m00s Copr repository 100% | 27.4 KiB/s | 1.5 KiB | 00m00s updates 100% | 1.0 MiB/s | 29.7 KiB | 00m00s Repositories loaded. Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed. Package "cmake-3.30.5-1.fc41.x86_64" is already installed. Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Nothing to do. Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed. Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed. Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed. Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed. Package "hdf5-devel-1.12.1-20.fc41.x86_64" is already installed. Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed. Package "lcov-2.0-4.fc41.noarch" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed. Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed. Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed. Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.0-1.fc41.noarch" is already installed. Package "python3-devel-3.13.0-1.fc41.x86_64" is already installed. Package "python3-h5py-3.12.1-3.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed. Package "python3-packaging-24.2-2.fc41.noarch" is already installed. Package "python3-pip-24.3.1-1.fc41.noarch" is already installed. Package "python3-pytest-8.3.3-3.fc41.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc41.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc41.noarch" is already installed. Package "python3-setuptools_scm-8.1.0-1.fc41.noarch" is already installed. Package "python3-wheel-1:0.44.0-2.fc41.noarch" is already installed. Package "tomcli-0.8.0-1.fc41.noarch" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1732147200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2gRwWy + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt Requirement satisfied: h5py>=2.9.0 (installed: h5py 3.12.1) Handling pytest>=6.0 from requirements file tests/requirement_tests.txt Requirement satisfied: pytest>=6.0 (installed: pytest 8.3.3) Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt Requirement satisfied: numpy>=1.14.2 (installed: numpy 1.26.4) Handling setuptools>=24.2.0 from build-system.requires Requirement satisfied: setuptools>=24.2.0 (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.44.0) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 8.1.0) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/morphio-3.4.0.dist-info' Handling numpy>=1.14.1 from hook generated metadata: Requires-Dist (morphio) Requirement satisfied: numpy>=1.14.1 (installed: numpy 1.26.4) Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (morphio) Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs" + cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires + rm -rfv morphio-3.4.0.dist-info/ removed 'morphio-3.4.0.dist-info/top_level.txt' removed 'morphio-3.4.0.dist-info/METADATA' removed 'morphio-3.4.0.dist-info/LICENSE.txt' removed 'morphio-3.4.0.dist-info/AUTHORS.txt' removed directory 'morphio-3.4.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dakIT6 + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_BINDINGS:BOOL=FALSE -DEXTERNAL_CATCH2:BOOL=TRUE -DEXTERNAL_GHC_FILESYSTEM:BOOL=TRUE -DEXTERNAL_HIGHFIVE:BOOL=TRUE -DEXTERNAL_PYBIND11:BOOL=TRUE -DMORPHIO_ENABLE_COVERAGE:BOOL=TRUE -DMORPHIO_TESTS:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DMORPHIO_VERSION_STRING:STRING=3.4.0 -DMorphIO_CXX_WARNINGS:BOOL=FALSE -GNinja -Wno-dev -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Performing Test HAVE_fprofile_abs_path -- Performing Test HAVE_fprofile_abs_path - Success CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): src/CMakeLists.txt:85 (include) CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): tests/CMakeLists.txt:43 (include) -- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 2 [1/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -MF src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/dendritic_spine.cpp [2/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/endoplasmic_reticulum.cpp [3/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/enums.cpp [4/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -MF src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/errorMessages.cpp [5/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/collection.cpp.o -MF src/CMakeFiles/morphio_obj.dir/collection.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/collection.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/collection.cpp [6/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -MF src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/glial_cell.cpp [7/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o -MF src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/error_message_generation.cpp [8/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o -MF src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/mito_section.cpp [9/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o -MF src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/mitochondria.cpp [10/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT 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MORPHIO_CMAKE_DEFS=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON,CMAKE_INSTALL_DO_STRIP:BOOL=OFF + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir Processing /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info writing /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio-3.4.0.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: morphio Building wheel for morphio (pyproject.toml): started Running command Building wheel for morphio (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/morphio copying morphio/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio creating build/lib.linux-x86_64-cpython-313/morphio/mut copying morphio/mut/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio/mut creating build/lib.linux-x86_64-cpython-313/morphio/vasculature copying morphio/vasculature/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio/vasculature running build_ext CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include) CMakeLists.txt:42 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:45 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP HIGHFIVE_EXAMPLES HIGHFIVE_UNIT_TESTS -- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313 Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313' Run Build Command(s): /usr/bin/ninja-build -v _morphio [1/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/endoplasmic_reticulum.cpp [2/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/enums.cpp [3/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -MF src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/dendritic_spine.cpp [4/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -MF 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src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -MF src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/glial_cell.cpp [6/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT 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src/CMakeFiles/morphio_obj.dir/readers/vasculatureHDF5.cpp.o src/CMakeFiles/morphio_obj.dir/section.cpp.o src/CMakeFiles/morphio_obj.dir/shared_utils.cpp.o src/CMakeFiles/morphio_obj.dir/soma.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/properties.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/section.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o src/CMakeFiles/morphio_obj.dir/version.cpp.o src/CMakeFiles/morphio_obj.dir/warning_handling.cpp.o && /usr/bin/ranlib src/libmorphio_static.a && : [40/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/morphio.cpp [41/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables 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-fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_immutable.cpp [43/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_misc.cpp [44/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_vasculature.cpp [45/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_mutable.cpp [46/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_warnings_exceptions.cpp [47/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bindings_utils.cpp [48/48] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -flto -shared -o /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o src/libmorphio_static.a -lhdf5 && cd /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313/binds/python && /usr/bin/strip /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/morphio copying build/lib.linux-x86_64-cpython-313/morphio/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio creating build/bdist.linux-x86_64/wheel/morphio/mut copying build/lib.linux-x86_64-cpython-313/morphio/mut/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio/mut creating build/bdist.linux-x86_64/wheel/morphio/vasculature copying build/lib.linux-x86_64-cpython-313/morphio/vasculature/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio/vasculature copying build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./morphio running install_egg_info running egg_info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' writing manifest file 'morphio.egg-info/SOURCES.txt' Copying morphio.egg-info to build/bdist.linux-x86_64/wheel/./morphio-3.4.0-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/morphio-3.4.0.dist-info/WHEEL creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-wheel-dobs4729/.tmp-km65vn84/morphio-3.4.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'morphio/__init__.py' adding 'morphio/_morphio.cpython-313-x86_64-linux-gnu.so' adding 'morphio/mut/__init__.py' adding 'morphio/vasculature/__init__.py' adding 'morphio-3.4.0.dist-info/AUTHORS.txt' adding 'morphio-3.4.0.dist-info/LICENSE.txt' adding 'morphio-3.4.0.dist-info/METADATA' adding 'morphio-3.4.0.dist-info/WHEEL' adding 'morphio-3.4.0.dist-info/top_level.txt' adding 'morphio-3.4.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for morphio (pyproject.toml): finished with status 'done' Created wheel for morphio: filename=morphio-3.4.0-cp313-cp313-linux_x86_64.whl size=772091 sha256=e155ca75667967c72b0a855da36f9587ed5e33ec10c6ad370e3fcf568050ea00 Stored in directory: /builddir/.cache/pip/wheels/ee/c3/10/370becb4d63347b21ed8b192db03b5bd7c455f6dcc44ad4816 Successfully built morphio + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Drjn2P + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/morphio-3.4.0-build + mkdir /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + DESTDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/collection.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/enums.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/errorMessages.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/exceptions.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/modifiers.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/soma.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/writers.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/properties.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_base.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/soma.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/types.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/properties.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/section.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/vasculature.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vector_types.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/version.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/warning_handling.h -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets-noconfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOConfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so.0.0.0 -- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so ++ ls /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir/morphio-3.4.0-cp313-cp313-linux_x86_64.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=morphio==3.4.0 + '[' -z morphio==3.4.0 ']' + TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir morphio==3.4.0 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir Processing ./pyproject-wheeldir/morphio-3.4.0-cp313-cp313-linux_x86_64.whl Installing collected packages: morphio Successfully installed morphio-3.4.0 + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --record /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD removed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD' + rm -fv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/REQUESTED removed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-files --output-modules /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-record --prefix /usr -l morphio + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.4.0-4.fc41 --unique-debug-suffix -3.4.0-4.fc41.x86_64 --unique-debug-src-base morphio-3.4.0-4.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/morphio-3.4.0-4.fc41.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 34 directories and 136 files, processed 3 inodes, 3 modified (0 replaced + 3 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.tRkecX + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.4.0 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 -VV Internal ctest changing into directory: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/DartConfiguration.tcl Test project /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: unittests 1: Test command: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/bin/unittests 1: Working Directory: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests 1: Test timeout computed to be: 10000000 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:2:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:4:warning 1: Warning: found a disconnected neurite. 1: Neurites are not supposed to have parentId: -1 1: (although this is normal if this neuron has no soma) 1: 1: $STRING$:0:warning 1: Warning: no soma found in file 1: 1: $STRING$:3:warning 1: Warning: Type changed within section, without bifurcation 1: 1: $STRING$:4:warning 1: Warning: Type changed within section, without bifurcation 1: 1: $STRING$:5:warning 1: Warning: Type changed within section, without bifurcation 1: 1: data/single_point_root.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 2 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 3 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: Skipping an attempt to write an empty morphology. 1: 1: Warning: writing file without a soma 1: 1: Warning: writing soma set to SOMA_UNDEFINED 1: 1: Soma must be stacked cylinders or a point: see https://github.com/BlueBrain/MorphIO/issues/457 1: 1: Three Point Soma: Only one column has the same coordinates. 1: 1: data/h5/v1/Neuron-no-soma.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/single-neurite.h5:0:warning 1: Warning: no soma found in file 1: Skipping LoadSWCMorphologyLocale because `std::locale` failed. 1: 1: data/markers.asc:0:warning 1: Warning: no soma found in file 1: 1: data/annotations.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: =============================================================================== 1: All tests passed (469 assertions in 60 test cases) 1: 1/1 Test #1: unittests ........................ Passed 0.09 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.09 sec ++ basename /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 + xdir=MorphIO-3.4.0 + cd .. + k='not test_v2' + k='not test_v2 and not test_neurolucida_markers' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest MorphIO-3.4.0/tests -k 'not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' -v ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 configfile: pyproject.toml collecting ... collected 171 items / 8 deselected / 163 selected MorphIO-3.4.0/tests/test_0_API.py::test_doc_exists PASSED [ 0%] MorphIO-3.4.0/tests/test_0_API.py::test_mut_immut_have_same_methods PASSED [ 1%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_empty_vasculature PASSED [ 1%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_components_vasculature PASSED [ 2%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_types PASSED [ 3%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_offsets PASSED [ 3%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_connectivity PASSED [ 4%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_iterators_vasculature PASSED [ 4%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_from_pathlib PASSED [ 5%] MorphIO-3.4.0/tests/test_10_vasculature.py::test_section___str__ PASSED [ 6%] MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path0] PASSED [ 6%] MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path1] PASSED [ 7%] MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path0] PASSED [ 7%] MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path1] PASSED [ 8%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered[collection_path0] PASSED [ 9%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered[collection_path1] PASSED [ 9%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered1[collection_path0] PASSED [ 10%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered1[collection_path1] PASSED [ 11%] MorphIO-3.4.0/tests/test_11_collection.py::test_container_with_warning_handler PASSED [ 11%] MorphIO-3.4.0/tests/test_1_swc.py::test_basic PASSED [ 12%] MorphIO-3.4.0/tests/test_1_swc.py::test_build_from_string PASSED [ 12%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_single_neurite PASSED [ 13%] MorphIO-3.4.0/tests/test_1_swc.py::test_skip_comments PASSED [ 14%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_simple PASSED [ 14%] MorphIO-3.4.0/tests/test_1_swc.py::test_set_raise_warnings PASSED [ 15%] MorphIO-3.4.0/tests/test_1_swc.py::test_repeated_id PASSED [ 15%] MorphIO-3.4.0/tests/test_1_swc.py::test_neurite_followed_by_soma PASSED [ 16%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_split_soma PASSED [ 17%] MorphIO-3.4.0/tests/test_1_swc.py::test_weird_indent PASSED [ 17%] MorphIO-3.4.0/tests/test_1_swc.py::test_cyclic PASSED [ 18%] MorphIO-3.4.0/tests/test_1_swc.py::test_simple_reversed PASSED [ 19%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_1_point PASSED [ 19%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_2_point PASSED [ 20%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_many_point PASSED [ 20%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_3_point_neuromorpho PASSED [ 21%] MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_3_point PASSED [ 22%] MorphIO-3.4.0/tests/test_1_swc.py::test_swc_threepoint_soma_tolerance PASSED [ 22%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_weird_ids PASSED [ 23%] MorphIO-3.4.0/tests/test_1_swc.py::test_multiple_soma PASSED [ 23%] MorphIO-3.4.0/tests/test_1_swc.py::test_disconnected_neurite PASSED [ 24%] MorphIO-3.4.0/tests/test_1_swc.py::test_neurite_wrong_root_point_neuromorpho_3_point_soma PASSED [ 25%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_duplicate PASSED [ 25%] MorphIO-3.4.0/tests/test_1_swc.py::test_unsupported_section_type PASSED [ 26%] MorphIO-3.4.0/tests/test_1_swc.py::test_three_point_soma_neuromorpho PASSED [ 26%] MorphIO-3.4.0/tests/test_1_swc.py::test_three_point_soma_stacked_cylinders PASSED [ 27%] MorphIO-3.4.0/tests/test_1_swc.py::test_trailing_space PASSED [ 28%] MorphIO-3.4.0/tests/test_1_swc.py::test_zero_diameter PASSED [ 28%] MorphIO-3.4.0/tests/test_1_swc.py::test_version PASSED [ 29%] MorphIO-3.4.0/tests/test_1_swc.py::test_no_soma PASSED [ 30%] MorphIO-3.4.0/tests/test_1_swc.py::test_throw_on_missing_data PASSED [ 30%] MorphIO-3.4.0/tests/test_1_swc.py::test_throw_on_negative_id PASSED [ 31%] MorphIO-3.4.0/tests/test_1_swc.py::test_axon_carrying_dendrite PASSED [ 31%] MorphIO-3.4.0/tests/test_1_swc.py::test_multi_type_section PASSED [ 32%] MorphIO-3.4.0/tests/test_1_swc.py::test_missing_parent PASSED [ 33%] MorphIO-3.4.0/tests/test_1_swc.py::test_extra_column PASSED [ 33%] MorphIO-3.4.0/tests/test_1_swc.py::test_read_simple_windows_eol PASSED [ 34%] MorphIO-3.4.0/tests/test_1_swc.py::test_WarningHandlerCollector PASSED [ 34%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_soma PASSED [ 35%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_parse_number_with_plus_symbol PASSED [ 36%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unknown_token PASSED [ 36%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unfinished_point PASSED [ 37%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_multiple_soma PASSED [ 38%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_neurite_no_soma PASSED [ 38%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_header PASSED [ 39%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_read_with_duplicates PASSED [ 39%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_read_without_duplicates PASSED [ 40%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_explicit_duplicates_with_arbitrary_diameter PASSED [ 41%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unfinished_file PASSED [ 41%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_section_single_point PASSED [ 42%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_children PASSED [ 42%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_spine PASSED [ 43%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent PASSED [ 44%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent_complex PASSED [ 44%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_spine1 PASSED [ 45%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_markers PASSED [ 46%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_string_markers PASSED [ 46%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_invalid_incomplete PASSED [ 47%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_font PASSED [ 47%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_imagecoord PASSED [ 48%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_Sections_block PASSED [ 49%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_version PASSED [ 49%] MorphIO-3.4.0/tests/test_2_neurolucida.py::test_load_from_string PASSED [ 50%] MorphIO-3.4.0/tests/test_3_h5.py::test_v1 PASSED [ 50%] MorphIO-3.4.0/tests/test_3_h5.py::test_wrong_section_type PASSED [ 51%] MorphIO-3.4.0/tests/test_3_h5.py::test_soma_no_neurite PASSED [ 52%] MorphIO-3.4.0/tests/test_3_h5.py::test_single_children PASSED [ 52%] MorphIO-3.4.0/tests/test_4_immut.py::test_heterogeneous_sections PASSED [ 53%] MorphIO-3.4.0/tests/test_4_immut.py::test_components PASSED [ 53%] MorphIO-3.4.0/tests/test_4_immut.py::test_is_root PASSED [ 54%] MorphIO-3.4.0/tests/test_4_immut.py::test_distance PASSED [ 55%] MorphIO-3.4.0/tests/test_4_immut.py::test_iter PASSED [ 55%] MorphIO-3.4.0/tests/test_4_immut.py::test_section_offsets PASSED [ 56%] MorphIO-3.4.0/tests/test_4_immut.py::test_connectivity PASSED [ 57%] MorphIO-3.4.0/tests/test_4_immut.py::test_endoplasmic_reticulum PASSED [ 57%] MorphIO-3.4.0/tests/test_4_immut.py::test_section___str__ PASSED [ 58%] MorphIO-3.4.0/tests/test_4_immut.py::test_section_has_same_shape PASSED [ 58%] MorphIO-3.4.0/tests/test_4_immut.py::test_from_pathlib PASSED [ 59%] MorphIO-3.4.0/tests/test_4_immut.py::test_more_iter PASSED [ 60%] MorphIO-3.4.0/tests/test_4_immut.py::test_glia PASSED [ 60%] MorphIO-3.4.0/tests/test_4_immut.py::test_dendritic_spine PASSED [ 61%] MorphIO-3.4.0/tests/test_4_immut.py::test_dendritic_spine_add_root_section PASSED [ 61%] MorphIO-3.4.0/tests/test_5_mut.py::test_heterogeneous_sections PASSED [ 62%] MorphIO-3.4.0/tests/test_5_mut.py::test_point_level PASSED [ 63%] MorphIO-3.4.0/tests/test_5_mut.py::test_connectivity PASSED [ 63%] MorphIO-3.4.0/tests/test_5_mut.py::test_empty_neurite PASSED [ 64%] MorphIO-3.4.0/tests/test_5_mut.py::test_single_neurite PASSED [ 65%] MorphIO-3.4.0/tests/test_5_mut.py::test_child_section PASSED [ 65%] MorphIO-3.4.0/tests/test_5_mut.py::test_append_no_duplicate PASSED [ 66%] MorphIO-3.4.0/tests/test_5_mut.py::test_mut_copy_ctor PASSED [ 66%] MorphIO-3.4.0/tests/test_5_mut.py::test_build_read_only PASSED [ 67%] MorphIO-3.4.0/tests/test_5_mut.py::test_mutable_immutable_equivalence PASSED [ 68%] MorphIO-3.4.0/tests/test_5_mut.py::test_sections_are_not_dereferenced PASSED [ 68%] MorphIO-3.4.0/tests/test_5_mut.py::test_append_mutable_section PASSED [ 69%] MorphIO-3.4.0/tests/test_5_mut.py::test_iterators PASSED [ 69%] MorphIO-3.4.0/tests/test_5_mut.py::test_non_C_nparray PASSED [ 70%] MorphIO-3.4.0/tests/test_5_mut.py::test_annotation PASSED [ 71%] MorphIO-3.4.0/tests/test_5_mut.py::test_empty_sibling PASSED [ 71%] MorphIO-3.4.0/tests/test_5_mut.py::test_nested_single_child PASSED [ 72%] MorphIO-3.4.0/tests/test_5_mut.py::test_section___str__ PASSED [ 73%] MorphIO-3.4.0/tests/test_5_mut.py::test_from_pathlib PASSED [ 73%] MorphIO-3.4.0/tests/test_5_mut.py::test_endoplasmic_reticulum PASSED [ 74%] MorphIO-3.4.0/tests/test_5_mut.py::test_remove_unifurcations PASSED [ 74%] MorphIO-3.4.0/tests/test_5_mut.py::test_remove_rootsection PASSED [ 75%] MorphIO-3.4.0/tests/test_5_mut.py::test_remove_rootsection_in_loop PASSED [ 76%] MorphIO-3.4.0/tests/test_5_mut.py::test_glia PASSED [ 76%] MorphIO-3.4.0/tests/test_5_mut.py::test_glia_round_trip PASSED [ 77%] MorphIO-3.4.0/tests/test_5_mut.py::test_dendritic_spine PASSED [ 77%] MorphIO-3.4.0/tests/test_5_mut.py::test_dendritic_spine_round_trip PASSED [ 78%] MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_destroyed_morphology PASSED [ 79%] MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_access_properties_no_morphology PASSED [ 79%] MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_copy_single_section PASSED [ 80%] MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_iteration_fails_with_orphan_section PASSED [ 80%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section PASSED [ 81%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section_multiple PASSED [ 82%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_root_section PASSED [ 82%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__unifurcation_bridge PASSED [ 83%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__remove_all_children PASSED [ 84%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__append_delete PASSED [ 84%] MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__traversals PASSED [ 85%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_empty_file PASSED [ 85%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_undefined_soma PASSED [ 86%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_basic PASSED [ 87%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_basic PASSED [ 87%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_merge_only_child_asc_h5 PASSED [ 88%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_merge_only_child_swc PASSED [ 88%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_perimeter PASSED [ 89%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_no_soma PASSED [ 90%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma__points_no_diameters PASSED [ 90%] MorphIO-3.4.0/tests/test_6_writers.py::test_duplicate_different_diameter PASSED [ 91%] MorphIO-3.4.0/tests/test_6_writers.py::test_single_point_root_section PASSED [ 92%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_custom_property__throws PASSED [ 92%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_types PASSED [ 93%] MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_invariants PASSED [ 93%] MorphIO-3.4.0/tests/test_6_writers.py::test_diameter_mismatch PASSED [ 94%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_no_modifier PASSED [ 95%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_nrn_order PASSED [ 95%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_nrn_order_stability PASSED [ 96%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_two_point_section PASSED [ 96%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_soma_sphere PASSED [ 97%] MorphIO-3.4.0/tests/test_7_modifiers.py::test_no_duplicate PASSED [ 98%] MorphIO-3.4.0/tests/test_8_all_morphologies.py::test_all SKIPPED (ba...) [ 98%] MorphIO-3.4.0/tests/test_9_surfaces.py::test_stacked_cylinder PASSED [ 99%] MorphIO-3.4.0/tests/test_9_surfaces.py::test_contour PASSED [100%] ================= 162 passed, 1 skipped, 8 deselected in 0.72s ================= + RPM_EC=0 ++ jobs -p + exit 0 Processing files: morphio-3.4.0-4.fc41.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.11fRzD + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + LICENSEDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/LICENSE.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: libmorphio.so.0.0.0()(64bit) morphio = 3.4.0-4.fc41 morphio(x86-64) = 3.4.0-4.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: morphio-devel-3.4.0-4.fc41.x86_64 Provides: cmake(MorphIO) cmake(morphio) morphio-devel = 3.4.0-4.fc41 morphio-devel(x86-64) = 3.4.0-4.fc41 morphio-static = 3.4.0-4.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libmorphio.so.0.0.0()(64bit) Processing files: python3-morphio-3.4.0-4.fc41.x86_64 Provides: python-morphio = 3.4.0-4.fc41 python3-morphio = 3.4.0-4.fc41 python3-morphio(x86-64) = 3.4.0-4.fc41 python3.13-morphio = 3.4.0-4.fc41 python3.13dist(morphio) = 3.4 python3dist(morphio) = 3.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.14.1 rtld(GNU_HASH) Processing files: morphio-doc-3.4.0-4.fc41.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ELkw0U + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + DOCDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/AUTHORS.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/CHANGELOG.md /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/CONTRIBUTING.md /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/README.rst /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/examples /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nSC7om + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + cd MorphIO-3.4.0 + LICENSEDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/LICENSE.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: morphio-doc = 3.4.0-4.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debugsource-3.4.0-4.fc41.x86_64 Provides: morphio-debugsource = 3.4.0-4.fc41 morphio-debugsource(x86-64) = 3.4.0-4.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debuginfo-3.4.0-4.fc41.x86_64 Provides: debuginfo(build-id) = 8548c0d09bdf2e0d47f3711e478bbc9f6052ccdb libmorphio.so.0.0.0-3.4.0-4.fc41.x86_64.debug()(64bit) morphio-debuginfo = 3.4.0-4.fc41 morphio-debuginfo(x86-64) = 3.4.0-4.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: morphio-debugsource(x86-64) = 3.4.0-4.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.src.rpm Wrote: /builddir/build/RPMS/python3-morphio-3.4.0-4.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-3.4.0-4.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-debugsource-3.4.0-4.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-devel-3.4.0-4.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-doc-3.4.0-4.fc41.noarch.rpm Wrote: /builddir/build/RPMS/morphio-debuginfo-3.4.0-4.fc41.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Oytikb + umask 022 + cd /builddir/build/BUILD/morphio-3.4.0-build + test -d /builddir/build/BUILD/morphio-3.4.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.4.0-build + rm -rf /builddir/build/BUILD/morphio-3.4.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild morphio-3.4.0-4.fc41.src.rpm Finish: build phase for morphio-3.4.0-4.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1732210602.760077/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/morphio-3.4.0-4.fc41.src.rpm) Config(child) 5 minutes 7 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "morphio-debugsource", "epoch": null, "version": "3.4.0", "release": "4.fc41", "arch": "x86_64" }, { "name": "morphio-doc", "epoch": null, "version": "3.4.0", "release": "4.fc41", "arch": "noarch" }, { "name": "morphio-devel", "epoch": null, "version": "3.4.0", "release": "4.fc41", "arch": "x86_64" }, { "name": "morphio-debuginfo", "epoch": null, "version": "3.4.0", "release": "4.fc41", "arch": "x86_64" }, { "name": "python3-morphio", "epoch": null, "version": "3.4.0", "release": "4.fc41", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.4.0", "release": "4.fc41", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.4.0", "release": "4.fc41", "arch": "src" } ] } RPMResults finished