Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c152' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6418863-fedora-38-x86_64 --chroot fedora-38-x86_64 Version: 0.69 PID: 5566 Logging PID: 5567 Task: {'appstream': False, 'background': True, 'build_id': 6418863, 'buildroot_pkgs': [], 'chroot': 'fedora-38-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '574dac449cedeb65feadc1685ff9783c4b602b7b', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/avogadro2-libs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'avogadro2-libs', 'package_version': '1.97.0-8', 'project_dirname': 'automatic-obsoletes', 'project_name': 'automatic-obsoletes', 'project_owner': 'torsava', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-38-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/sagitter', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/sagitter', 'tags': [], 'task_id': '6418863-fedora-38-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/avogadro2-libs /var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/avogadro2-libs', '/var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs'... Running: git checkout 574dac449cedeb65feadc1685ff9783c4b602b7b -- cmd: ['git', 'checkout', '574dac449cedeb65feadc1685ff9783c4b602b7b', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs rc: 0 stdout: stderr: Note: switching to '574dac449cedeb65feadc1685ff9783c4b602b7b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 574dac4 automatic import of avogadro2-libs Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading avogadro2-libs-crystals-1.0.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o avogadro2-libs-crystals-1.0.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/avogadro2-libs/avogadro2-libs-crystals-1.0.1.tar.gz/md5/b05b526928b89fd27a5784b24c419613/avogadro2-libs-crystals-1.0.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 148k 100 148k 0 0 1743k 0 --:--:-- --:--:-- --:--:-- 1765k INFO: Reading stdout from command: md5sum avogadro2-libs-crystals-1.0.1.tar.gz INFO: Downloading avogadro2-libs-molecules-master.zip INFO: Calling: curl -H Pragma: -o avogadro2-libs-molecules-master.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/avogadro2-libs/avogadro2-libs-molecules-master.zip/md5/c109a16d04a775839f87de1149af3ef1/avogadro2-libs-molecules-master.zip % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 453k 100 453k 0 0 3025k 0 --:--:-- --:--:-- --:--:-- 3045k INFO: Reading stdout from command: md5sum avogadro2-libs-molecules-master.zip INFO: Downloading avogadrolibs-1.97.0.tar.gz INFO: Calling: curl -H Pragma: -o avogadrolibs-1.97.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/avogadro2-libs/avogadrolibs-1.97.0.tar.gz/md5/a7cc488fb0ab65516117304df62fb2e9/avogadrolibs-1.97.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 10.9M 100 10.9M 0 0 2257k 0 0:00:04 0:00:04 --:--:-- 1748k INFO: Reading stdout from command: md5sum avogadrolibs-1.97.0.tar.gz INFO: Downloading avogenerators-1.97.0.tar.gz INFO: Calling: curl -H Pragma: -o avogenerators-1.97.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/avogadro2-libs/avogenerators-1.97.0.tar.gz/md5/d115ab0f5f4dbf10d2ba2d1191c80a59/avogenerators-1.97.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 15677 100 15677 0 0 276k 0 --:--:-- --:--:-- --:--:-- 278k INFO: Reading stdout from command: md5sum avogenerators-1.97.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695149265.663230 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs/avogadro2-libs.spec) Config(fedora-38-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.1.1 INFO: Mock Version: 5.1.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-bootstrap-1695149265.663230/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:38 INFO: Pulling image: registry.fedoraproject.org/fedora:38 INFO: Copy content of container registry.fedoraproject.org/fedora:38 to /var/lib/mock/fedora-38-x86_64-bootstrap-1695149265.663230/root INFO: Checking that registry.fedoraproject.org/fedora:38 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:38 with podman image mount INFO: image registry.fedoraproject.org/fedora:38 as /var/lib/containers/storage/overlay/5eb2e729c16708697e84f3cf2648d1ff3f2ce56f2f1eceb0289b226bc96b061a/merged INFO: umounting image registry.fedoraproject.org/fedora:38 (/var/lib/containers/storage/overlay/5eb2e729c16708697e84f3cf2648d1ff3f2ce56f2f1eceb0289b226bc96b061a/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 45 MB/s | 14 MB 00:00 fedora 18 MB/s | 83 MB 00:04 updates 2.6 MB/s | 32 MB 00:12 Last metadata expiration check: 0:00:03 ago on Tue Sep 19 18:48:21 2023. Package python3-dnf-4.16.2-1.fc38.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc38 copr_base 285 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc38 updates 156 k python3-dateutil noarch 1:2.8.2-6.fc38 copr_base 349 k python3-dbus x86_64 1.3.2-4.fc38 copr_base 147 k python3-distro noarch 1.8.0-6.fc38 copr_base 46 k python3-six noarch 1.16.0-12.fc38 copr_base 42 k python3-systemd x86_64 235-3.fc38 copr_base 102 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 3.6 M Downloading Packages: (1/7): python3-distro-1.8.0-6.fc38.noarch.rpm 678 kB/s | 46 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc38.x86_64.rpm 1.7 MB/s | 147 kB 00:00 (3/7): python3-dateutil-2.8.2-6.fc38.noarch.rpm 3.3 MB/s | 349 kB 00:00 (4/7): python3-dnf-plugins-core-4.4.2-1.fc38.no 7.5 MB/s | 285 kB 00:00 (5/7): python3-six-1.16.0-12.fc38.noarch.rpm 2.2 MB/s | 42 kB 00:00 (6/7): python3-systemd-235-3.fc38.x86_64.rpm 9.8 MB/s | 102 kB 00:00 (7/7): dbus-libs-1.14.10-1.fc38.x86_64.rpm 3.0 MB/s | 156 kB 00:00 -------------------------------------------------------------------------------- Total 5.4 MB/s | 1.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : dbus-libs-1:1.14.10-1.fc38.x86_64 1/7 Installing : python3-dbus-1.3.2-4.fc38.x86_64 2/7 Installing : python3-systemd-235-3.fc38.x86_64 3/7 Installing : python3-six-1.16.0-12.fc38.noarch 4/7 Installing : python3-dateutil-1:2.8.2-6.fc38.noarch 5/7 Installing : python3-distro-1.8.0-6.fc38.noarch 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc38.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc38.noarch 7/7 Verifying : python3-dateutil-1:2.8.2-6.fc38.noarch 1/7 Verifying : python3-dbus-1.3.2-4.fc38.x86_64 2/7 Verifying : python3-distro-1.8.0-6.fc38.noarch 3/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc38.noarch 4/7 Verifying : python3-six-1.16.0-12.fc38.noarch 5/7 Verifying : python3-systemd-235-3.fc38.x86_64 6/7 Verifying : dbus-libs-1:1.14.10-1.fc38.x86_64 7/7 Installed: dbus-libs-1:1.14.10-1.fc38.x86_64 python3-dateutil-1:2.8.2-6.fc38.noarch python3-dbus-1.3.2-4.fc38.x86_64 python3-distro-1.8.0-6.fc38.noarch python3-dnf-plugins-core-4.4.2-1.fc38.noarch python3-six-1.16.0-12.fc38.noarch python3-systemd-235-3.fc38.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1695149265.663230/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 45 MB/s | 14 MB 00:00 fedora 25 MB/s | 83 MB 00:03 updates 22 MB/s | 32 MB 00:01 Last metadata expiration check: 0:00:03 ago on Tue Sep 19 18:49:12 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.1-12.fc38 updates 1.1 M cpio x86_64 2.13-14.fc38 fedora 276 k diffutils x86_64 3.10-1.fc38 updates 398 k fedora-release-common noarch 38-36 updates 22 k findutils x86_64 1:4.9.0-3.fc38 fedora 492 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M glibc-minimal-langpack x86_64 2.37-5.fc38 updates 38 k grep x86_64 3.8-3.fc38 fedora 293 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.2-2.fc38 fedora 181 k patch x86_64 2.7.6-19.fc38 fedora 126 k redhat-rpm-config noarch 252-1.fc38 fedora 83 k rpm-build x86_64 4.18.91-3.fc38 copr_base 69 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-6.fc38 fedora 1.3 M tar x86_64 2:1.34-8.fc38 fedora 889 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.39.1-2.fc38 copr_base 1.1 M which x86_64 2.21-39.fc38 fedora 42 k xz x86_64 5.4.1-1.fc38 fedora 419 k Installing dependencies: alternatives x86_64 1.25-1.fc38 updates 38 k ansible-srpm-macros noarch 1-10.fc38 updates 21 k audit-libs x86_64 3.1.2-1.fc38 updates 117 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-15.fc38 fedora 7.0 k binutils x86_64 2.39-9.fc38 fedora 5.4 M binutils-gold x86_64 2.39-9.fc38 fedora 784 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.1-12.fc38 updates 2.0 M cracklib x86_64 2.9.11-1.fc38 updates 93 k crypto-policies noarch 20230301-1.gita12f7b2.fc38 fedora 93 k curl x86_64 8.0.1-4.fc38 updates 349 k cyrus-sasl-lib x86_64 2.1.28-9.fc38 fedora 794 k debugedit x86_64 5.0-9.fc38 updates 78 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-7.fc38 fedora 22 k elfutils x86_64 0.189-3.fc38 updates 533 k elfutils-debuginfod-client x86_64 0.189-3.fc38 updates 38 k elfutils-default-yama-scope noarch 0.189-3.fc38 updates 13 k elfutils-libelf x86_64 0.189-3.fc38 updates 195 k elfutils-libs x86_64 0.189-3.fc38 updates 258 k fedora-gpg-keys noarch 38-1 fedora 126 k fedora-release noarch 38-36 updates 12 k fedora-release-identity-basic noarch 38-36 updates 13 k fedora-repos noarch 38-1 fedora 9.1 k file x86_64 5.45-1.fc38 copr_base 50 k file-libs x86_64 5.45-1.fc38 copr_base 764 k filesystem x86_64 3.18-3.fc38 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.2-4.fc38 updates 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37-5.fc38 updates 2.1 M glibc-common x86_64 2.37-5.fc38 updates 315 k glibc-gconv-extra x86_64 2.37-5.fc38 updates 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-2.fc38 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-19.fc38 updates 10 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.21-3.fc38 updates 764 k libacl x86_64 2.3.1-6.fc38 fedora 23 k libarchive x86_64 3.6.1-4.fc38 fedora 400 k libattr x86_64 2.5.1-6.fc38 fedora 18 k libblkid x86_64 2.39.1-2.fc38 copr_base 117 k libbrotli x86_64 1.1.0-1.fc38 copr_base 336 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-8.fc38 copr_base 33 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcurl x86_64 8.0.1-4.fc38 updates 313 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.5.2-1.fc38 updates 30 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.39.1-2.fc38 copr_base 163 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.2.1-1.fc38 updates 109 k libgomp x86_64 13.2.1-1.fc38 updates 319 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.39.1-2.fc38 copr_base 155 k libnghttp2 x86_64 1.52.0-1.fc38 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.8.0-6.fc38 fedora 35 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k libpwquality x86_64 1.4.5-7.fc38 copr_base 108 k libselinux x86_64 3.5-4.fc38 copr_base 87 k libsemanage x86_64 3.5-4.fc38 copr_base 120 k libsepol x86_64 3.5-1.fc38 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39.1-2.fc38 copr_base 68 k libssh x86_64 0.10.5-1.fc38 updates 211 k libssh-config noarch 0.10.5-1.fc38 updates 9.0 k libstdc++ x86_64 13.2.1-1.fc38 updates 863 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc2.fc38 updates 93 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-8.fc38 fedora 26 k libuuid x86_64 2.39.1-2.fc38 copr_base 29 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.36-1.fc38 updates 119 k libxml2 x86_64 2.11.5-1.fc38 copr_base 697 k libzstd x86_64 1.5.5-1.fc38 updates 308 k lua-libs x86_64 5.4.4-9.fc38 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-2.fc38 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-3.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-3.20230114.fc38 fedora 333 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.9-2.fc38 updates 2.1 M p11-kit x86_64 0.25.0-1.fc38 updates 487 k p11-kit-trust x86_64 0.25.0-1.fc38 updates 141 k package-notes-srpm-macros noarch 0.5-8.fc38 updates 11 k pam x86_64 1.5.2-16.fc38 fedora 560 k pam-libs x86_64 1.5.2-16.fc38 fedora 58 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.8.0-6.fc38 fedora 41 k pkgconf-m4 noarch 1.8.0-6.fc38 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-6.fc38 fedora 9.6 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230812-1.fc38 updates 57 k pyproject-srpm-macros noarch 1.9.0-1.fc38 updates 15 k python-srpm-macros noarch 3.11-10.fc38 fedora 26 k qt5-srpm-macros noarch 5.15.10-1.fc38 updates 8.2 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.91-3.fc38 copr_base 501 k rpm-build-libs x86_64 4.18.91-3.fc38 copr_base 96 k rpm-libs x86_64 4.18.91-3.fc38 copr_base 309 k rpm-sequoia x86_64 1.5.0-1.fc38 updates 884 k rpmautospec-rpm-macros noarch 0.3.5-5.fc38 copr_base 9.3 k rust-srpm-macros noarch 24-5.fc38 copr_base 13 k setup noarch 2.14.3-2.fc38 fedora 152 k sqlite-libs x86_64 3.40.1-2.fc38 fedora 666 k systemd-libs x86_64 253.9-1.fc38 updates 652 k tzdata noarch 2023c-1.fc38 fedora 718 k util-linux-core x86_64 2.39.1-2.fc38 copr_base 470 k xxhash-libs x86_64 0.8.2-1.fc38 updates 37 k xz-libs x86_64 5.4.1-1.fc38 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc38 updates 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 151 Packages Total download size: 52 M Installed size: 177 M Downloading Packages: (1/151): file-5.45-1.fc38.x86_64.rpm 772 kB/s | 50 kB 00:00 (2/151): libblkid-2.39.1-2.fc38.x86_64.rpm 1.6 MB/s | 117 kB 00:00 (3/151): file-libs-5.45-1.fc38.x86_64.rpm 8.4 MB/s | 764 kB 00:00 (4/151): libbrotli-1.1.0-1.fc38.x86_64.rpm 11 MB/s | 336 kB 00:00 (5/151): libcap-ng-0.8.3-8.fc38.x86_64.rpm 1.3 MB/s | 33 kB 00:00 (6/151): libfdisk-2.39.1-2.fc38.x86_64.rpm 13 MB/s | 163 kB 00:00 (7/151): libmount-2.39.1-2.fc38.x86_64.rpm 13 MB/s | 155 kB 00:00 (8/151): libpwquality-1.4.5-7.fc38.x86_64.rpm 8.5 MB/s | 108 kB 00:00 (9/151): libselinux-3.5-4.fc38.x86_64.rpm 8.4 MB/s | 87 kB 00:00 (10/151): libsemanage-3.5-4.fc38.x86_64.rpm 12 MB/s | 120 kB 00:00 (11/151): libsmartcols-2.39.1-2.fc38.x86_64.rpm 6.3 MB/s | 68 kB 00:00 (12/151): libuuid-2.39.1-2.fc38.x86_64.rpm 3.2 MB/s | 29 kB 00:00 (13/151): libxml2-2.11.5-1.fc38.x86_64.rpm 31 MB/s | 697 kB 00:00 (14/151): rpm-4.18.91-3.fc38.x86_64.rpm 21 MB/s | 501 kB 00:00 (15/151): rpm-build-4.18.91-3.fc38.x86_64.rpm 3.1 MB/s | 69 kB 00:00 (16/151): rpm-build-libs-4.18.91-3.fc38.x86_64. 9.5 MB/s | 96 kB 00:00 (17/151): rpmautospec-rpm-macros-0.3.5-5.fc38.n 1.0 MB/s | 9.3 kB 00:00 (18/151): rpm-libs-4.18.91-3.fc38.x86_64.rpm 24 MB/s | 309 kB 00:00 (19/151): rust-srpm-macros-24-5.fc38.noarch.rpm 1.3 MB/s | 13 kB 00:00 (20/151): util-linux-core-2.39.1-2.fc38.x86_64. 26 MB/s | 470 kB 00:00 (21/151): util-linux-2.39.1-2.fc38.x86_64.rpm 40 MB/s | 1.1 MB 00:00 (22/151): basesystem-11-15.fc38.noarch.rpm 458 kB/s | 7.0 kB 00:00 (23/151): authselect-1.4.2-2.fc38.x86_64.rpm 2.6 MB/s | 144 kB 00:00 (24/151): authselect-libs-1.4.2-2.fc38.x86_64.r 4.7 MB/s | 249 kB 00:00 (25/151): binutils-gold-2.39-9.fc38.x86_64.rpm 22 MB/s | 784 kB 00:00 (26/151): bzip2-1.0.8-13.fc38.x86_64.rpm 3.4 MB/s | 52 kB 00:00 (27/151): bash-5.2.15-3.fc38.x86_64.rpm 20 MB/s | 1.8 MB 00:00 (28/151): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 3.2 MB/s | 41 kB 00:00 (29/151): binutils-2.39-9.fc38.x86_64.rpm 47 MB/s | 5.4 MB 00:00 (30/151): ca-certificates-2023.2.60-2.fc38.noar 18 MB/s | 845 kB 00:00 (31/151): cpio-2.13-14.fc38.x86_64.rpm 5.8 MB/s | 276 kB 00:00 (32/151): crypto-policies-20230301-1.gita12f7b2 11 MB/s | 93 kB 00:00 (33/151): dwz-0.15-2.fc38.x86_64.rpm 11 MB/s | 135 kB 00:00 (34/151): ed-1.19-2.fc38.x86_64.rpm 8.6 MB/s | 78 kB 00:00 (35/151): cyrus-sasl-lib-2.1.28-9.fc38.x86_64.r 33 MB/s | 794 kB 00:00 (36/151): efi-srpm-macros-5-7.fc38.noarch.rpm 2.4 MB/s | 22 kB 00:00 (37/151): fedora-gpg-keys-38-1.noarch.rpm 14 MB/s | 126 kB 00:00 (38/151): fedora-repos-38-1.noarch.rpm 1.1 MB/s | 9.1 kB 00:00 (39/151): findutils-4.9.0-3.fc38.x86_64.rpm 30 MB/s | 492 kB 00:00 (40/151): fonts-srpm-macros-2.0.5-11.fc38.noarc 2.5 MB/s | 26 kB 00:00 (41/151): fpc-srpm-macros-1.3-7.fc38.noarch.rpm 980 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(72/151): libunistring1.0-1.0-1.fc38.x86_64.rpm 35 MB/s | 539 kB 00:00 (73/151): lua-libs-5.4.4-9.fc38.x86_64.rpm 13 MB/s | 133 kB 00:00 (74/151): lua-srpm-macros-1-8.fc38.noarch.rpm 1.0 MB/s | 8.6 kB 00:00 (75/151): lz4-libs-1.9.4-2.fc38.x86_64.rpm 7.7 MB/s | 67 kB 00:00 (76/151): ncurses-base-6.4-3.20230114.fc38.noar 9.1 MB/s | 87 kB 00:00 (77/151): ncurses-libs-6.4-3.20230114.fc38.x86_ 23 MB/s | 333 kB 00:00 (78/151): mpfr-4.1.1-3.fc38.x86_64.rpm 33 MB/s | 600 kB 00:00 (79/151): ocaml-srpm-macros-7-3.fc38.noarch.rpm 1.6 MB/s | 13 kB 00:00 (80/151): openblas-srpm-macros-2-13.fc38.noarch 966 kB/s | 7.5 kB 00:00 (81/151): openldap-2.6.4-1.fc38.x86_64.rpm 21 MB/s | 254 kB 00:00 (82/151): pam-libs-1.5.2-16.fc38.x86_64.rpm 6.3 MB/s | 58 kB 00:00 (83/151): pam-1.5.2-16.fc38.x86_64.rpm 28 MB/s | 560 kB 00:00 (84/151): patch-2.7.6-19.fc38.x86_64.rpm 13 MB/s | 126 kB 00:00 (85/151): pcre2-10.42-1.fc38.1.x86_64.rpm 22 MB/s | 234 kB 00:00 (86/151): perl-srpm-macros-1-48.fc38.noarch.rpm 1.0 MB/s 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398 kB 00:00 (117/151): elfutils-0.189-3.fc38.x86_64.rpm 12 MB/s | 533 kB 00:00 (118/151): elfutils-default-yama-scope-0.189-3. 364 kB/s | 13 kB 00:00 (119/151): elfutils-libs-0.189-3.fc38.x86_64.rp 5.8 MB/s | 258 kB 00:00 (120/151): fedora-release-common-38-36.noarch.r 534 kB/s | 22 kB 00:00 (121/151): elfutils-libelf-0.189-3.fc38.x86_64. 2.1 MB/s | 195 kB 00:00 (122/151): fedora-release-identity-basic-38-36. 356 kB/s | 13 kB 00:00 (123/151): glibc-2.37-5.fc38.x86_64.rpm 16 MB/s | 2.1 MB 00:00 (124/151): fedora-release-38-36.noarch.rpm 51 kB/s | 12 kB 00:00 (125/151): glibc-common-2.37-5.fc38.x86_64.rpm 6.6 MB/s | 315 kB 00:00 (126/151): glibc-minimal-langpack-2.37-5.fc38.x 1.0 MB/s | 38 kB 00:00 (127/151): gdb-minimal-13.2-4.fc38.x86_64.rpm 16 MB/s | 4.2 MB 00:00 (128/151): kernel-srpm-macros-1.0-19.fc38.noarc 314 kB/s | 10 kB 00:00 (129/151): glibc-gconv-extra-2.37-5.fc38.x86_64 8.9 MB/s | 1.6 MB 00:00 (130/151): libcurl-8.0.1-4.fc38.x86_64.rpm 3.6 MB/s | 313 kB 00:00 (131/151): krb5-libs-1.21-3.fc38.x86_64.rpm 6.1 MB/s | 764 kB 00:00 (132/151): libeconf-0.5.2-1.fc38.x86_64.rpm 938 kB/s | 30 kB 00:00 (133/151): libgcc-13.2.1-1.fc38.x86_64.rpm 2.9 MB/s | 109 kB 00:00 (134/151): libgomp-13.2.1-1.fc38.x86_64.rpm 7.0 MB/s | 319 kB 00:00 (135/151): libssh-0.10.5-1.fc38.x86_64.rpm 4.6 MB/s | 211 kB 00:00 (136/151): libssh-config-0.10.5-1.fc38.noarch.r 285 kB/s | 9.0 kB 00:00 (137/151): libxcrypt-4.4.36-1.fc38.x86_64.rpm 3.2 MB/s | 119 kB 00:00 (138/151): libtirpc-1.3.3-1.rc2.fc38.x86_64.rpm 2.3 MB/s | 93 kB 00:00 (139/151): libstdc++-13.2.1-1.fc38.x86_64.rpm 12 MB/s | 863 kB 00:00 (140/151): p11-kit-0.25.0-1.fc38.x86_64.rpm 6.8 MB/s | 487 kB 00:00 (141/151): libzstd-1.5.5-1.fc38.x86_64.rpm 2.5 MB/s | 308 kB 00:00 (142/151): p11-kit-trust-0.25.0-1.fc38.x86_64.r 3.4 MB/s | 141 kB 00:00 (143/151): package-notes-srpm-macros-0.5-8.fc38 324 kB/s | 11 kB 00:00 (144/151): pyproject-srpm-macros-1.9.0-1.fc38.n 346 kB/s | 15 kB 00:00 (145/151): publicsuffix-list-dafsa-20230812-1.f 741 kB/s | 57 kB 00:00 (146/151): qt5-srpm-macros-5.15.10-1.fc38.noarc 218 kB/s | 8.2 kB 00:00 (147/151): rpm-sequoia-1.5.0-1.fc38.x86_64.rpm 8.7 MB/s | 884 kB 00:00 (148/151): openssl-libs-3.0.9-2.fc38.x86_64.rpm 6.5 MB/s | 2.1 MB 00:00 (149/151): xxhash-libs-0.8.2-1.fc38.x86_64.rpm 1.1 MB/s | 37 kB 00:00 (150/151): zstd-1.5.5-1.fc38.x86_64.rpm 6.3 MB/s | 482 kB 00:00 (151/151): systemd-libs-253.9-1.fc38.x86_64.rpm 3.7 MB/s | 652 kB 00:00 -------------------------------------------------------------------------------- Total 24 MB/s | 52 MB 00:02 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-3.fc38.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-1.fc38.x86_64 1/151 Running scriptlet: libgcc-13.2.1-1.fc38.x86_64 1/151 Installing : crypto-policies-20230301-1.gita12f7b2.fc38.noarc 2/151 Running scriptlet: crypto-policies-20230301-1.gita12f7b2.fc38.noarc 2/151 Installing : fedora-release-identity-basic-38-36.noarch 3/151 Installing : tzdata-2023c-1.fc38.noarch 4/151 Installing : qt5-srpm-macros-5.15.10-1.fc38.noarch 5/151 Installing : pyproject-srpm-macros-1.9.0-1.fc38.noarch 6/151 Installing : publicsuffix-list-dafsa-20230812-1.fc38.noarch 7/151 Installing : package-notes-srpm-macros-0.5-8.fc38.noarch 8/151 Installing : libssh-config-0.10.5-1.fc38.noarch 9/151 Installing : kernel-srpm-macros-1.0-19.fc38.noarch 10/151 Installing : coreutils-common-9.1-12.fc38.x86_64 11/151 Installing : ansible-srpm-macros-1-10.fc38.noarch 12/151 Installing : pkgconf-m4-1.8.0-6.fc38.noarch 13/151 Installing : perl-srpm-macros-1-48.fc38.noarch 14/151 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 15/151 Installing : openblas-srpm-macros-2-13.fc38.noarch 16/151 Installing : ocaml-srpm-macros-7-3.fc38.noarch 17/151 Installing : ncurses-base-6.4-3.20230114.fc38.noarch 18/151 Installing : gnat-srpm-macros-6-2.fc38.noarch 19/151 Installing : ghc-srpm-macros-1.6.1-1.fc38.noarch 20/151 Installing : fpc-srpm-macros-1.3-7.fc38.noarch 21/151 Installing : fedora-gpg-keys-38-1.noarch 22/151 Installing : fedora-release-38-36.noarch 23/151 Installing : fedora-repos-38-1.noarch 24/151 Installing : fedora-release-common-38-36.noarch 25/151 Installing : setup-2.14.3-2.fc38.noarch 26/151 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.3-2.fc38.noarch 26/151 Installing : filesystem-3.18-3.fc38.x86_64 27/151 Installing : basesystem-11-15.fc38.noarch 28/151 Installing : bash-5.2.15-3.fc38.x86_64 29/151 Running scriptlet: bash-5.2.15-3.fc38.x86_64 29/151 Installing : 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libacl-2.3.1-6.fc38.x86_64 46/151 Installing : libcap-2.48-6.fc38.x86_64 47/151 Installing : readline-8.2-3.fc38.x86_64 48/151 Installing : libxcrypt-4.4.36-1.fc38.x86_64 49/151 Installing : lz4-libs-1.9.4-2.fc38.x86_64 50/151 Installing : libeconf-0.5.2-1.fc38.x86_64 51/151 Installing : systemd-libs-253.9-1.fc38.x86_64 52/151 Installing : mpfr-4.1.1-3.fc38.x86_64 53/151 Installing : dwz-0.15-2.fc38.x86_64 54/151 Installing : unzip-6.0-60.fc38.x86_64 55/151 Installing : file-libs-5.45-1.fc38.x86_64 56/151 Installing : file-5.45-1.fc38.x86_64 57/151 Installing : libcap-ng-0.8.3-8.fc38.x86_64 58/151 Installing : audit-libs-3.1.2-1.fc38.x86_64 59/151 Installing : pam-libs-1.5.2-16.fc38.x86_64 60/151 Installing : libsmartcols-2.39.1-2.fc38.x86_64 61/151 Installing : libcom_err-1.46.5-4.fc38.x86_64 62/151 Installing : libsepol-3.5-1.fc38.x86_64 63/151 Installing : libunistring1.0-1.0-1.fc38.x86_64 64/151 Installing : libidn2-2.3.4-2.fc38.x86_64 65/151 Installing : lua-libs-5.4.4-9.fc38.x86_64 66/151 Installing : pcre2-10.42-1.fc38.1.x86_64 67/151 Installing : libselinux-3.5-4.fc38.x86_64 68/151 Installing : sed-4.8-12.fc38.x86_64 69/151 Installing : grep-3.8-3.fc38.x86_64 70/151 Installing : findutils-1:4.9.0-3.fc38.x86_64 71/151 Installing : xz-5.4.1-1.fc38.x86_64 72/151 Installing : libmount-2.39.1-2.fc38.x86_64 73/151 Installing : alternatives-1.25-1.fc38.x86_64 74/151 Installing : util-linux-core-2.39.1-2.fc38.x86_64 75/151 Installing : libsemanage-3.5-4.fc38.x86_64 76/151 Installing : shadow-utils-2:4.13-6.fc38.x86_64 77/151 Running scriptlet: libutempter-1.2.1-8.fc38.x86_64 78/151 Installing : libutempter-1.2.1-8.fc38.x86_64 78/151 Installing : tar-2:1.34-8.fc38.x86_64 79/151 Installing : libpsl-0.21.2-2.fc38.x86_64 80/151 Installing : zip-3.0-36.fc38.x86_64 81/151 Installing : zstd-1.5.5-1.fc38.x86_64 82/151 Installing : libfdisk-2.39.1-2.fc38.x86_64 83/151 Installing : bzip2-1.0.8-13.fc38.x86_64 84/151 Installing : libxml2-2.11.5-1.fc38.x86_64 85/151 Installing : sqlite-libs-3.40.1-2.fc38.x86_64 86/151 Installing : libbrotli-1.1.0-1.fc38.x86_64 87/151 Installing : cpio-2.13-14.fc38.x86_64 88/151 Installing : ed-1.19-2.fc38.x86_64 89/151 Installing : patch-2.7.6-19.fc38.x86_64 90/151 Installing : gdbm-libs-1:1.23-3.fc38.x86_64 91/151 Installing : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 92/151 Installing : jansson-2.13.1-6.fc38.x86_64 93/151 Installing : keyutils-libs-1.6.1-6.fc38.x86_64 94/151 Installing : libdb-5.3.28-55.fc38.x86_64 95/151 Installing : libffi-3.4.4-2.fc38.x86_64 96/151 Installing : p11-kit-0.25.0-1.fc38.x86_64 97/151 Installing : libnghttp2-1.52.0-1.fc38.x86_64 98/151 Installing : libpkgconf-1.8.0-6.fc38.x86_64 99/151 Installing : pkgconf-1.8.0-6.fc38.x86_64 100/151 Installing : pkgconf-pkg-config-1.8.0-6.fc38.x86_64 101/151 Installing : libsigsegv-2.14-4.fc38.x86_64 102/151 Installing : gawk-5.1.1-5.fc38.x86_64 103/151 Installing : libtasn1-4.19.0-2.fc38.x86_64 104/151 Installing : p11-kit-trust-0.25.0-1.fc38.x86_64 105/151 Running scriptlet: p11-kit-trust-0.25.0-1.fc38.x86_64 105/151 Installing : openssl-libs-1:3.0.9-2.fc38.x86_64 106/151 Installing : coreutils-9.1-12.fc38.x86_64 107/151 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 108/151 Installing : ca-certificates-2023.2.60-2.fc38.noarch 108/151 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 108/151 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 109/151 Installing : authselect-libs-1.4.2-2.fc38.x86_64 109/151 Installing : gzip-1.12-3.fc38.x86_64 110/151 Installing : cracklib-2.9.11-1.fc38.x86_64 111/151 Installing : libpwquality-1.4.5-7.fc38.x86_64 112/151 Installing : authselect-1.4.2-2.fc38.x86_64 113/151 Installing : libarchive-3.6.1-4.fc38.x86_64 114/151 Installing : libevent-2.1.12-8.fc38.x86_64 115/151 Installing : openldap-2.6.4-1.fc38.x86_64 116/151 Installing : rpm-sequoia-1.5.0-1.fc38.x86_64 117/151 Installing : rpm-libs-4.18.91-3.fc38.x86_64 118/151 Installing : libverto-0.3.2-5.fc38.x86_64 119/151 Installing : krb5-libs-1.21-3.fc38.x86_64 120/151 Installing : libtirpc-1.3.3-1.rc2.fc38.x86_64 121/151 Installing : libnsl2-2.0.0-5.fc38.x86_64 122/151 Installing : pam-1.5.2-16.fc38.x86_64 123/151 Installing : libssh-0.10.5-1.fc38.x86_64 124/151 Installing : libcurl-8.0.1-4.fc38.x86_64 125/151 Installing : curl-8.0.1-4.fc38.x86_64 126/151 Running scriptlet: rpm-4.18.91-3.fc38.x86_64 127/151 Installing : rpm-4.18.91-3.fc38.x86_64 127/151 Installing : rpmautospec-rpm-macros-0.3.5-5.fc38.noarch 128/151 Installing : efi-srpm-macros-5-7.fc38.noarch 129/151 Installing : lua-srpm-macros-1-8.fc38.noarch 130/151 Installing : diffutils-3.10-1.fc38.x86_64 131/151 Installing : libgomp-13.2.1-1.fc38.x86_64 132/151 Installing : xxhash-libs-0.8.2-1.fc38.x86_64 133/151 Installing : elfutils-default-yama-scope-0.189-3.fc38.noarch 134/151 Running scriptlet: elfutils-default-yama-scope-0.189-3.fc38.noarch 134/151 Installing : elfutils-libs-0.189-3.fc38.x86_64 135/151 Installing : elfutils-debuginfod-client-0.189-3.fc38.x86_64 136/151 Installing : binutils-gold-2.39-9.fc38.x86_64 137/151 Installing : binutils-2.39-9.fc38.x86_64 138/151 Running scriptlet: binutils-2.39-9.fc38.x86_64 138/151 Installing : elfutils-0.189-3.fc38.x86_64 139/151 Installing : gdb-minimal-13.2-4.fc38.x86_64 140/151 Installing : debugedit-5.0-9.fc38.x86_64 141/151 Installing : rpm-build-libs-4.18.91-3.fc38.x86_64 142/151 Installing : rust-srpm-macros-24-5.fc38.noarch 143/151 Installing : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 144/151 Installing : go-srpm-macros-3.2.0-2.fc38.noarch 145/151 Installing : python-srpm-macros-3.11-10.fc38.noarch 146/151 Installing : redhat-rpm-config-252-1.fc38.noarch 147/151 Installing : rpm-build-4.18.91-3.fc38.x86_64 148/151 Installing : util-linux-2.39.1-2.fc38.x86_64 149/151 Installing : which-2.21-39.fc38.x86_64 150/151 Installing : info-7.0.2-2.fc38.x86_64 151/151 Running scriptlet: filesystem-3.18-3.fc38.x86_64 151/151 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 151/151 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 151/151 Running scriptlet: rpm-4.18.91-3.fc38.x86_64 151/151 Running scriptlet: info-7.0.2-2.fc38.x86_64 151/151 Verifying : file-5.45-1.fc38.x86_64 1/151 Verifying : file-libs-5.45-1.fc38.x86_64 2/151 Verifying : libblkid-2.39.1-2.fc38.x86_64 3/151 Verifying : libbrotli-1.1.0-1.fc38.x86_64 4/151 Verifying : libcap-ng-0.8.3-8.fc38.x86_64 5/151 Verifying : libfdisk-2.39.1-2.fc38.x86_64 6/151 Verifying : libmount-2.39.1-2.fc38.x86_64 7/151 Verifying : libpwquality-1.4.5-7.fc38.x86_64 8/151 Verifying : libselinux-3.5-4.fc38.x86_64 9/151 Verifying : libsemanage-3.5-4.fc38.x86_64 10/151 Verifying : libsmartcols-2.39.1-2.fc38.x86_64 11/151 Verifying : libuuid-2.39.1-2.fc38.x86_64 12/151 Verifying : libxml2-2.11.5-1.fc38.x86_64 13/151 Verifying : rpm-4.18.91-3.fc38.x86_64 14/151 Verifying : rpm-build-4.18.91-3.fc38.x86_64 15/151 Verifying : rpm-build-libs-4.18.91-3.fc38.x86_64 16/151 Verifying : rpm-libs-4.18.91-3.fc38.x86_64 17/151 Verifying : rpmautospec-rpm-macros-0.3.5-5.fc38.noarch 18/151 Verifying : rust-srpm-macros-24-5.fc38.noarch 19/151 Verifying : util-linux-2.39.1-2.fc38.x86_64 20/151 Verifying : util-linux-core-2.39.1-2.fc38.x86_64 21/151 Verifying : authselect-1.4.2-2.fc38.x86_64 22/151 Verifying : authselect-libs-1.4.2-2.fc38.x86_64 23/151 Verifying : basesystem-11-15.fc38.noarch 24/151 Verifying : bash-5.2.15-3.fc38.x86_64 25/151 Verifying : binutils-2.39-9.fc38.x86_64 26/151 Verifying : binutils-gold-2.39-9.fc38.x86_64 27/151 Verifying : bzip2-1.0.8-13.fc38.x86_64 28/151 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 29/151 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 30/151 Verifying : cpio-2.13-14.fc38.x86_64 31/151 Verifying : crypto-policies-20230301-1.gita12f7b2.fc38.noarc 32/151 Verifying : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 33/151 Verifying : dwz-0.15-2.fc38.x86_64 34/151 Verifying : ed-1.19-2.fc38.x86_64 35/151 Verifying : efi-srpm-macros-5-7.fc38.noarch 36/151 Verifying : fedora-gpg-keys-38-1.noarch 37/151 Verifying : fedora-repos-38-1.noarch 38/151 Verifying : filesystem-3.18-3.fc38.x86_64 39/151 Verifying : findutils-1:4.9.0-3.fc38.x86_64 40/151 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 41/151 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 42/151 Verifying : gawk-5.1.1-5.fc38.x86_64 43/151 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 44/151 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 45/151 Verifying : gmp-1:6.2.1-4.fc38.x86_64 46/151 Verifying : gnat-srpm-macros-6-2.fc38.noarch 47/151 Verifying : go-srpm-macros-3.2.0-2.fc38.noarch 48/151 Verifying : grep-3.8-3.fc38.x86_64 49/151 Verifying : gzip-1.12-3.fc38.x86_64 50/151 Verifying : info-7.0.2-2.fc38.x86_64 51/151 Verifying : jansson-2.13.1-6.fc38.x86_64 52/151 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 53/151 Verifying : libacl-2.3.1-6.fc38.x86_64 54/151 Verifying : libarchive-3.6.1-4.fc38.x86_64 55/151 Verifying : libattr-2.5.1-6.fc38.x86_64 56/151 Verifying : libcap-2.48-6.fc38.x86_64 57/151 Verifying : libcom_err-1.46.5-4.fc38.x86_64 58/151 Verifying : libdb-5.3.28-55.fc38.x86_64 59/151 Verifying : libevent-2.1.12-8.fc38.x86_64 60/151 Verifying : libffi-3.4.4-2.fc38.x86_64 61/151 Verifying : libidn2-2.3.4-2.fc38.x86_64 62/151 Verifying : libnghttp2-1.52.0-1.fc38.x86_64 63/151 Verifying : libnsl2-2.0.0-5.fc38.x86_64 64/151 Verifying : libpkgconf-1.8.0-6.fc38.x86_64 65/151 Verifying : libpsl-0.21.2-2.fc38.x86_64 66/151 Verifying : libsepol-3.5-1.fc38.x86_64 67/151 Verifying : libsigsegv-2.14-4.fc38.x86_64 68/151 Verifying : libtasn1-4.19.0-2.fc38.x86_64 69/151 Verifying : libunistring1.0-1.0-1.fc38.x86_64 70/151 Verifying : libutempter-1.2.1-8.fc38.x86_64 71/151 Verifying : libverto-0.3.2-5.fc38.x86_64 72/151 Verifying : lua-libs-5.4.4-9.fc38.x86_64 73/151 Verifying : lua-srpm-macros-1-8.fc38.noarch 74/151 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 75/151 Verifying : mpfr-4.1.1-3.fc38.x86_64 76/151 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 77/151 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 78/151 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 79/151 Verifying : openblas-srpm-macros-2-13.fc38.noarch 80/151 Verifying : openldap-2.6.4-1.fc38.x86_64 81/151 Verifying : pam-1.5.2-16.fc38.x86_64 82/151 Verifying : pam-libs-1.5.2-16.fc38.x86_64 83/151 Verifying : patch-2.7.6-19.fc38.x86_64 84/151 Verifying : pcre2-10.42-1.fc38.1.x86_64 85/151 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 86/151 Verifying : perl-srpm-macros-1-48.fc38.noarch 87/151 Verifying : pkgconf-1.8.0-6.fc38.x86_64 88/151 Verifying : pkgconf-m4-1.8.0-6.fc38.noarch 89/151 Verifying : pkgconf-pkg-config-1.8.0-6.fc38.x86_64 90/151 Verifying : popt-1.19-2.fc38.x86_64 91/151 Verifying : python-srpm-macros-3.11-10.fc38.noarch 92/151 Verifying : readline-8.2-3.fc38.x86_64 93/151 Verifying : redhat-rpm-config-252-1.fc38.noarch 94/151 Verifying : sed-4.8-12.fc38.x86_64 95/151 Verifying : setup-2.14.3-2.fc38.noarch 96/151 Verifying : shadow-utils-2:4.13-6.fc38.x86_64 97/151 Verifying : sqlite-libs-3.40.1-2.fc38.x86_64 98/151 Verifying : tar-2:1.34-8.fc38.x86_64 99/151 Verifying : tzdata-2023c-1.fc38.noarch 100/151 Verifying : unzip-6.0-60.fc38.x86_64 101/151 Verifying : which-2.21-39.fc38.x86_64 102/151 Verifying : xz-5.4.1-1.fc38.x86_64 103/151 Verifying : xz-libs-5.4.1-1.fc38.x86_64 104/151 Verifying : zip-3.0-36.fc38.x86_64 105/151 Verifying : zlib-1.2.13-3.fc38.x86_64 106/151 Verifying : alternatives-1.25-1.fc38.x86_64 107/151 Verifying : ansible-srpm-macros-1-10.fc38.noarch 108/151 Verifying : audit-libs-3.1.2-1.fc38.x86_64 109/151 Verifying : coreutils-9.1-12.fc38.x86_64 110/151 Verifying : coreutils-common-9.1-12.fc38.x86_64 111/151 Verifying : cracklib-2.9.11-1.fc38.x86_64 112/151 Verifying : curl-8.0.1-4.fc38.x86_64 113/151 Verifying : debugedit-5.0-9.fc38.x86_64 114/151 Verifying : diffutils-3.10-1.fc38.x86_64 115/151 Verifying : elfutils-0.189-3.fc38.x86_64 116/151 Verifying : elfutils-debuginfod-client-0.189-3.fc38.x86_64 117/151 Verifying : elfutils-default-yama-scope-0.189-3.fc38.noarch 118/151 Verifying : elfutils-libelf-0.189-3.fc38.x86_64 119/151 Verifying : elfutils-libs-0.189-3.fc38.x86_64 120/151 Verifying : fedora-release-38-36.noarch 121/151 Verifying : fedora-release-common-38-36.noarch 122/151 Verifying : fedora-release-identity-basic-38-36.noarch 123/151 Verifying : gdb-minimal-13.2-4.fc38.x86_64 124/151 Verifying : glibc-2.37-5.fc38.x86_64 125/151 Verifying : glibc-common-2.37-5.fc38.x86_64 126/151 Verifying : glibc-gconv-extra-2.37-5.fc38.x86_64 127/151 Verifying : glibc-minimal-langpack-2.37-5.fc38.x86_64 128/151 Verifying : kernel-srpm-macros-1.0-19.fc38.noarch 129/151 Verifying : krb5-libs-1.21-3.fc38.x86_64 130/151 Verifying : libcurl-8.0.1-4.fc38.x86_64 131/151 Verifying : libeconf-0.5.2-1.fc38.x86_64 132/151 Verifying : libgcc-13.2.1-1.fc38.x86_64 133/151 Verifying : libgomp-13.2.1-1.fc38.x86_64 134/151 Verifying : libssh-0.10.5-1.fc38.x86_64 135/151 Verifying : libssh-config-0.10.5-1.fc38.noarch 136/151 Verifying : libstdc++-13.2.1-1.fc38.x86_64 137/151 Verifying : libtirpc-1.3.3-1.rc2.fc38.x86_64 138/151 Verifying : libxcrypt-4.4.36-1.fc38.x86_64 139/151 Verifying : libzstd-1.5.5-1.fc38.x86_64 140/151 Verifying : openssl-libs-1:3.0.9-2.fc38.x86_64 141/151 Verifying : p11-kit-0.25.0-1.fc38.x86_64 142/151 Verifying : p11-kit-trust-0.25.0-1.fc38.x86_64 143/151 Verifying : package-notes-srpm-macros-0.5-8.fc38.noarch 144/151 Verifying : publicsuffix-list-dafsa-20230812-1.fc38.noarch 145/151 Verifying : pyproject-srpm-macros-1.9.0-1.fc38.noarch 146/151 Verifying : qt5-srpm-macros-5.15.10-1.fc38.noarch 147/151 Verifying : rpm-sequoia-1.5.0-1.fc38.x86_64 148/151 Verifying : systemd-libs-253.9-1.fc38.x86_64 149/151 Verifying : xxhash-libs-0.8.2-1.fc38.x86_64 150/151 Verifying : zstd-1.5.5-1.fc38.x86_64 151/151 Installed: alternatives-1.25-1.fc38.x86_64 ansible-srpm-macros-1-10.fc38.noarch audit-libs-3.1.2-1.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.39-9.fc38.x86_64 binutils-gold-2.39-9.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.1-12.fc38.x86_64 coreutils-common-9.1-12.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.11-1.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-8.0.1-4.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-9.fc38.x86_64 diffutils-3.10-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.189-3.fc38.x86_64 elfutils-debuginfod-client-0.189-3.fc38.x86_64 elfutils-default-yama-scope-0.189-3.fc38.noarch elfutils-libelf-0.189-3.fc38.x86_64 elfutils-libs-0.189-3.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-36.noarch fedora-release-common-38-36.noarch fedora-release-identity-basic-38-36.noarch fedora-repos-38-1.noarch file-5.45-1.fc38.x86_64 file-libs-5.45-1.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-1:4.9.0-3.fc38.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-13.2-4.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-5.fc38.x86_64 glibc-common-2.37-5.fc38.x86_64 glibc-gconv-extra-2.37-5.fc38.x86_64 glibc-minimal-langpack-2.37-5.fc38.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-2.fc38.noarch grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc38.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-3.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.39.1-2.fc38.x86_64 libbrotli-1.1.0-1.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-8.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.0.1-4.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.5.2-1.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39.1-2.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.2.1-1.fc38.x86_64 libgomp-13.2.1-1.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39.1-2.fc38.x86_64 libnghttp2-1.52.0-1.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-7.fc38.x86_64 libselinux-3.5-4.fc38.x86_64 libsemanage-3.5-4.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc38.x86_64 libssh-0.10.5-1.fc38.x86_64 libssh-config-0.10.5-1.fc38.noarch libstdc++-13.2.1-1.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc2.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.39.1-2.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc38.x86_64 libxml2-2.11.5-1.fc38.x86_64 libzstd-1.5.5-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-1.fc38.x86_64 openssl-libs-1:3.0.9-2.fc38.x86_64 p11-kit-0.25.0-1.fc38.x86_64 p11-kit-trust-0.25.0-1.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-6.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch pkgconf-pkg-config-1.8.0-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230812-1.fc38.noarch pyproject-srpm-macros-1.9.0-1.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch qt5-srpm-macros-5.15.10-1.fc38.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-252-1.fc38.noarch rpm-4.18.91-3.fc38.x86_64 rpm-build-4.18.91-3.fc38.x86_64 rpm-build-libs-4.18.91-3.fc38.x86_64 rpm-libs-4.18.91-3.fc38.x86_64 rpm-sequoia-1.5.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.3.5-5.fc38.noarch rust-srpm-macros-24-5.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-2:4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.9-1.fc38.x86_64 tar-2:1.34-8.fc38.x86_64 tzdata-2023c-1.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39.1-2.fc38.x86_64 util-linux-core-2.39.1-2.fc38.x86_64 which-2.21-39.fc38.x86_64 xxhash-libs-0.8.2-1.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc38.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc38.x86_64 ansible-srpm-macros-1-10.fc38.noarch audit-libs-3.1.2-1.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.39-9.fc38.x86_64 binutils-gold-2.39-9.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.1-12.fc38.x86_64 coreutils-common-9.1-12.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.11-1.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-8.0.1-4.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-9.fc38.x86_64 diffutils-3.10-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.189-3.fc38.x86_64 elfutils-debuginfod-client-0.189-3.fc38.x86_64 elfutils-default-yama-scope-0.189-3.fc38.noarch elfutils-libelf-0.189-3.fc38.x86_64 elfutils-libs-0.189-3.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-36.noarch fedora-release-common-38-36.noarch fedora-release-identity-basic-38-36.noarch fedora-repos-38-1.noarch file-5.45-1.fc38.x86_64 file-libs-5.45-1.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-4.9.0-3.fc38.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-13.2-4.fc38.x86_64 gdbm-libs-1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-5.fc38.x86_64 glibc-common-2.37-5.fc38.x86_64 glibc-gconv-extra-2.37-5.fc38.x86_64 glibc-minimal-langpack-2.37-5.fc38.x86_64 gmp-6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-2.fc38.noarch gpg-pubkey-eb10b464-6202d9c6 grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc38.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-3.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.39.1-2.fc38.x86_64 libbrotli-1.1.0-1.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-8.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.0.1-4.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.5.2-1.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39.1-2.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.2.1-1.fc38.x86_64 libgomp-13.2.1-1.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39.1-2.fc38.x86_64 libnghttp2-1.52.0-1.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-7.fc38.x86_64 libselinux-3.5-4.fc38.x86_64 libsemanage-3.5-4.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc38.x86_64 libssh-0.10.5-1.fc38.x86_64 libssh-config-0.10.5-1.fc38.noarch libstdc++-13.2.1-1.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc2.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.39.1-2.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc38.x86_64 libxml2-2.11.5-1.fc38.x86_64 libzstd-1.5.5-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-1.fc38.x86_64 openssl-libs-3.0.9-2.fc38.x86_64 p11-kit-0.25.0-1.fc38.x86_64 p11-kit-trust-0.25.0-1.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-6.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch pkgconf-pkg-config-1.8.0-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230812-1.fc38.noarch pyproject-srpm-macros-1.9.0-1.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch qt5-srpm-macros-5.15.10-1.fc38.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-252-1.fc38.noarch rpm-4.18.91-3.fc38.x86_64 rpm-build-4.18.91-3.fc38.x86_64 rpm-build-libs-4.18.91-3.fc38.x86_64 rpm-libs-4.18.91-3.fc38.x86_64 rpm-sequoia-1.5.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.3.5-5.fc38.noarch rust-srpm-macros-24-5.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.9-1.fc38.x86_64 tar-1.34-8.fc38.x86_64 tzdata-2023c-1.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39.1-2.fc38.x86_64 util-linux-core-2.39.1-2.fc38.x86_64 which-2.21-39.fc38.x86_64 xxhash-libs-0.8.2-1.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.97.0-8.fc38.src.rpm RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1695149265.663230/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-x86_64-1695149265.663230/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1695149265.663230/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-duv2it_d/avogadro2-libs/avogadro2-libs.spec) Config(child) 1 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.97.0-8.fc38.src.rpm) Config(fedora-38-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-bootstrap-1695149265.663230/root. INFO: reusing tmpfs at /var/lib/mock/fedora-38-x86_64-bootstrap-1695149265.663230/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1695149265.663230/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.1-3.fc38.x86_64 rpm-sequoia-1.4.1-1.fc38.x86_64 python3-dnf-4.16.2-1.fc38.noarch python3-dnf-plugins-core-4.4.2-1.fc38.noarch yum-4.16.2-1.fc38.noarch Start: build phase for avogadro2-libs-1.97.0-8.fc38.src.rpm Start: build setup for avogadro2-libs-1.97.0-8.fc38.src.rpm warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.97.0-8.fc38.src.rpm RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 29 kB/s | 1.5 kB 00:00 fedora 604 kB/s | 25 kB 00:00 updates 550 kB/s | 22 kB 00:00 Dependencies resolved. =========================================================================================== Package Arch Version Repo Size =========================================================================================== Installing: boost-devel x86_64 1.81.0-5.fc38 copr_base 12 M chrpath x86_64 0.16-19.fc38 fedora 30 k cmake x86_64 3.27.4-6.fc38 updates 8.0 M doxygen x86_64 2:1.9.6-7.fc38 fedora 4.8 M eigen3-devel noarch 3.4.0-9.fc38 fedora 1.2 M gcc x86_64 13.2.1-1.fc38 updates 34 M gcc-c++ x86_64 13.2.1-1.fc38 updates 13 M glew-devel x86_64 2.2.0-4.fc38 fedora 222 k graphviz x86_64 8.1.0-4.fc38 copr_base 5.0 M hdf5-devel x86_64 1.12.1-11.fc38 fedora 1.3 M jsoncpp-devel x86_64 1.9.5-4.fc38 fedora 29 k libarchive-devel x86_64 3.6.1-4.fc38 fedora 134 k make x86_64 1:4.4.1-1.fc38 updates 588 k mesa-libGLU-devel x86_64 9.0.3-1.fc38 updates 12 k mmtf-cpp-devel x86_64 1.1.0-2.fc38 fedora 30 k openbabel-devel x86_64 3.1.1-21.fc38 copr_base 192 k python3-devel x86_64 3.11.5-1.fc38 updates 270 k qt5-qtbase-devel x86_64 5.15.10-5.fc38 updates 3.5 M qt5-qtsvg-devel x86_64 5.15.10-1.fc38 updates 32 k qt5-qttools-devel x86_64 5.15.10-1.fc38 updates 227 k spglib-devel x86_64 1.16.1-7.fc38 copr_base 13 k Installing dependencies: adobe-mappings-cmap noarch 20230622-1.fc38 updates 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-1.fc38 updates 113 k adobe-mappings-pdf noarch 20190401-3.fc38 fedora 698 k annobin-docs noarch 12.26-1.fc38 updates 92 k annobin-plugin-gcc x86_64 12.26-1.fc38 updates 957 k avahi-libs x86_64 0.8-22.fc38 updates 66 k boost x86_64 1.81.0-5.fc38 copr_base 15 k boost-atomic x86_64 1.81.0-5.fc38 copr_base 21 k boost-chrono x86_64 1.81.0-5.fc38 copr_base 27 k boost-container x86_64 1.81.0-5.fc38 copr_base 41 k boost-context x86_64 1.81.0-5.fc38 copr_base 18 k boost-contract x86_64 1.81.0-5.fc38 copr_base 47 k boost-coroutine x86_64 1.81.0-5.fc38 copr_base 21 k boost-date-time x86_64 1.81.0-5.fc38 copr_base 17 k boost-fiber x86_64 1.81.0-5.fc38 copr_base 43 k boost-filesystem x86_64 1.81.0-5.fc38 copr_base 68 k boost-graph x86_64 1.81.0-5.fc38 copr_base 153 k boost-iostreams x86_64 1.81.0-5.fc38 copr_base 43 k boost-json x86_64 1.81.0-5.fc38 copr_base 111 k boost-locale x86_64 1.81.0-5.fc38 copr_base 222 k boost-log x86_64 1.81.0-5.fc38 copr_base 494 k boost-math x86_64 1.81.0-5.fc38 copr_base 219 k boost-nowide x86_64 1.81.0-5.fc38 copr_base 22 k boost-numpy3 x86_64 1.81.0-5.fc38 copr_base 30 k boost-program-options x86_64 1.81.0-5.fc38 copr_base 110 k boost-python3 x86_64 1.81.0-5.fc38 copr_base 97 k boost-random x86_64 1.81.0-5.fc38 copr_base 25 k boost-regex x86_64 1.81.0-5.fc38 copr_base 112 k boost-serialization x86_64 1.81.0-5.fc38 copr_base 135 k boost-stacktrace x86_64 1.81.0-5.fc38 copr_base 31 k boost-system x86_64 1.81.0-5.fc38 copr_base 16 k boost-test x86_64 1.81.0-5.fc38 copr_base 241 k boost-thread x86_64 1.81.0-5.fc38 copr_base 60 k boost-timer x86_64 1.81.0-5.fc38 copr_base 25 k boost-type_erasure x86_64 1.81.0-5.fc38 copr_base 34 k boost-wave x86_64 1.81.0-5.fc38 copr_base 226 k cairo x86_64 1.17.8-4.fc38 updates 704 k cairo-gobject x86_64 1.17.8-4.fc38 updates 18 k clang-libs x86_64 16.0.6-3.fc38 updates 22 M clang-resource-filesystem x86_64 16.0.6-3.fc38 updates 12 k clang15-libs x86_64 15.0.7-4.fc38 fedora 21 M clang15-resource-filesystem x86_64 15.0.7-4.fc38 fedora 12 k cmake-data noarch 3.27.4-6.fc38 updates 2.2 M cmake-filesystem x86_64 3.27.4-6.fc38 updates 18 k cmake-rpm-macros noarch 3.27.4-6.fc38 updates 18 k cpp x86_64 13.2.1-1.fc38 updates 11 M crypto-policies-scripts noarch 20230301-1.gita12f7b2.fc38 fedora 116 k cups-libs x86_64 1:2.4.6-4.fc38 updates 266 k dbus-libs x86_64 1:1.14.10-1.fc38 updates 156 k double-conversion x86_64 3.1.5-8.fc38 fedora 49 k emacs-filesystem noarch 1:28.2-7.fc38 updates 7.9 k expat x86_64 2.5.0-2.fc38 fedora 110 k flexiblas x86_64 3.3.1-5.fc38 updates 33 k flexiblas-netlib x86_64 3.3.1-5.fc38 updates 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc38 updates 17 k fontconfig x86_64 2.14.2-1.fc38 fedora 295 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freetype x86_64 2.13.0-2.fc38 fedora 414 k fribidi x86_64 1.0.12-3.fc38 fedora 89 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc-gfortran x86_64 13.2.1-1.fc38 updates 12 M gcc-plugin-annobin x86_64 13.2.1-1.fc38 updates 46 k gd x86_64 2.3.3-10.fc38 fedora 140 k gdk-pixbuf2 x86_64 2.42.10-2.fc38 fedora 485 k gl-manpages noarch 1.1-26.20190306.fc38 fedora 1.2 M glib2 x86_64 2.76.5-2.fc38 updates 2.8 M glibc-devel x86_64 2.37-5.fc38 updates 53 k glibc-headers-x86 noarch 2.37-5.fc38 updates 533 k glx-utils x86_64 8.5.0-1.fc38 fedora 40 k gnutls x86_64 3.8.1-1.fc38 updates 1.1 M google-droid-sans-fonts noarch 20200215-15.fc38 updates 2.7 M google-noto-fonts-common noarch 20230201-1.fc38 fedora 16 k google-noto-sans-vf-fonts noarch 20230201-1.fc38 fedora 580 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k groff-base x86_64 1.22.4-11.fc38 fedora 1.1 M gts x86_64 0.7.6-44.20121130.fc38 fedora 240 k guile22 x86_64 2.2.7-7.fc38 fedora 6.5 M harfbuzz x86_64 7.1.0-1.fc38 fedora 889 k hdf5 x86_64 1.12.1-11.fc38 fedora 2.2 M highway x86_64 1.0.7-1.fc38 updates 478 k hwdata noarch 0.374-1.fc38 updates 1.6 M inchi-libs x86_64 1.0.6-6.fc38 fedora 684 k jbig2dec-libs x86_64 0.19-8.fc38 fedora 73 k jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k jsoncpp x86_64 1.9.5-4.fc38 fedora 97 k kernel-headers x86_64 6.4.4-200.fc38 updates 1.5 M langpacks-core-font-en noarch 3.0-32.fc38 updates 9.6 k lasi x86_64 1.1.3-10.fc38 fedora 53 k lcms2 x86_64 2.15-1.fc38 fedora 178 k libGLEW x86_64 2.2.0-4.fc38 fedora 175 k libICE x86_64 1.0.10-10.fc38 fedora 71 k libSM x86_64 1.2.3-12.fc38 fedora 41 k libX11 x86_64 1.8.6-1.fc38 updates 649 k libX11-common noarch 1.8.6-1.fc38 updates 175 k libX11-devel x86_64 1.8.6-1.fc38 updates 1.0 M libX11-xcb x86_64 1.8.6-1.fc38 updates 11 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXfixes x86_64 6.0.0-5.fc38 fedora 19 k libXft x86_64 2.3.8-2.fc38 updates 72 k libXpm x86_64 3.5.15-3.fc38 fedora 63 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXt x86_64 1.2.1-4.fc38 fedora 179 k libXxf86vm x86_64 1.1.5-2.fc38 fedora 18 k libaec x86_64 1.0.6-4.fc38 fedora 42 k libaec-devel x86_64 1.0.6-4.fc38 fedora 12 k libaom x86_64 3.7.0-1.fc38 updates 1.8 M libavif x86_64 0.11.1-7.fc38 fedora 84 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libdatrie x86_64 0.2.13-5.fc38 fedora 32 k libdav1d x86_64 1.2.1-1.fc38 updates 618 k libdrm x86_64 2.4.114-2.fc38 fedora 157 k libedit x86_64 3.1-45.20221030cvs.fc38 fedora 107 k libevdev x86_64 1.13.1-1.fc38 updates 44 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.2.1-1.fc38 updates 904 k libglvnd x86_64 1:1.6.0-2.fc38 fedora 134 k libglvnd-core-devel x86_64 1:1.6.0-2.fc38 fedora 18 k libglvnd-devel x86_64 1:1.6.0-2.fc38 fedora 163 k libglvnd-egl x86_64 1:1.6.0-2.fc38 fedora 36 k libglvnd-gles x86_64 1:1.6.0-2.fc38 fedora 32 k libglvnd-glx x86_64 1:1.6.0-2.fc38 fedora 142 k libglvnd-opengl x86_64 1:1.6.0-2.fc38 fedora 43 k libgs x86_64 10.01.2-3.fc38 updates 3.5 M libgudev x86_64 237-4.fc38 fedora 35 k libicu x86_64 72.1-2.fc38 fedora 10 M libicu-devel x86_64 72.1-2.fc38 fedora 918 k libijs x86_64 0.35-17.fc38 fedora 29 k libimagequant x86_64 2.17.0-4.fc38 fedora 63 k libinput x86_64 1.23.0-2.fc38 updates 213 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k libjxl x86_64 1:0.7.0-6.fc38 fedora 1.0 M liblerc x86_64 4.0.0-3.fc38 fedora 202 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpaper x86_64 1:2.0.8-1.fc38 fedora 26 k libpciaccess x86_64 0.16-8.fc38 fedora 26 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libproxy x86_64 0.4.18-6.fc38 copr_base 71 k libquadmath x86_64 13.2.1-1.fc38 updates 194 k libquadmath-devel x86_64 13.2.1-1.fc38 updates 36 k librsvg2 x86_64 2.56.3-1.fc38 updates 1.6 M libstdc++-devel x86_64 13.2.1-1.fc38 updates 2.6 M libthai x86_64 0.1.29-4.fc38 fedora 213 k libtiff x86_64 4.4.0-8.fc38 updates 201 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libunistring x86_64 1.1-3.fc38 fedora 545 k libuv x86_64 1:1.46.0-1.fc38 updates 159 k libvmaf x86_64 2.3.0-5.fc38 fedora 180 k libwacom x86_64 2.8.0-1.fc38 updates 42 k libwacom-data noarch 2.8.0-1.fc38 updates 191 k libwayland-client x86_64 1.22.0-1.fc38 updates 34 k libwayland-server x86_64 1.22.0-1.fc38 updates 42 k libwebp x86_64 1.3.1-3.fc38 updates 284 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-1.fc38 updates 30 k libxkbcommon x86_64 1.5.0-2.fc38 fedora 140 k libxkbcommon-x11 x86_64 1.5.0-2.fc38 fedora 22 k libxshmfence x86_64 1.3-12.fc38 fedora 12 k llvm-libs x86_64 16.0.6-3.fc38 updates 27 M llvm15-libs x86_64 15.0.7-4.fc38 fedora 25 M mesa-libEGL x86_64 23.1.7-1.fc38 updates 131 k mesa-libEGL-devel x86_64 23.1.7-1.fc38 updates 21 k mesa-libGL x86_64 23.1.7-1.fc38 updates 173 k mesa-libGLU x86_64 9.0.3-1.fc38 updates 160 k mesa-libgbm x86_64 23.1.7-1.fc38 updates 45 k mesa-libglapi x86_64 23.1.7-1.fc38 updates 54 k mkfontscale x86_64 1.2.2-3.fc38 fedora 32 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k msgpack x86_64 3.1.0-11.fc38 fedora 30 k msgpack-devel x86_64 3.1.0-11.fc38 fedora 427 k mtdev x86_64 1.1.6-5.fc38 fedora 21 k ncurses x86_64 6.4-3.20230114.fc38 fedora 412 k netpbm x86_64 11.02.00-1.fc38 fedora 185 k nettle x86_64 3.8-3.fc38 fedora 412 k nspr x86_64 4.35.0-10.fc38 updates 136 k nss x86_64 3.93.0-1.fc38 updates 695 k nss-softokn x86_64 3.93.0-1.fc38 updates 1.0 M nss-softokn-freebl x86_64 3.93.0-1.fc38 updates 326 k nss-sysinit x86_64 3.93.0-1.fc38 updates 18 k nss-util x86_64 3.93.0-1.fc38 updates 86 k openbabel-libs x86_64 3.1.1-21.fc38 copr_base 3.7 M openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openjpeg2 x86_64 2.5.0-3.fc38 fedora 178 k pango x86_64 1.50.14-1.fc38 fedora 342 k pcre2-utf16 x86_64 10.42-1.fc38.1 fedora 214 k perl-AutoLoader noarch 5.74-497.fc38 updates 22 k perl-B x86_64 1.83-497.fc38 updates 182 k perl-Carp noarch 1.52-490.fc38 fedora 29 k perl-Class-Struct noarch 0.66-497.fc38 updates 23 k perl-Data-Dumper x86_64 2.184-491.fc38 fedora 56 k perl-Digest noarch 1.20-490.fc38 fedora 25 k perl-Digest-MD5 x86_64 2.58-490.fc38 fedora 36 k perl-DynaLoader x86_64 1.52-497.fc38 updates 27 k perl-Encode x86_64 4:3.19-493.fc38 fedora 1.7 M perl-English noarch 1.11-497.fc38 updates 15 k perl-Errno x86_64 1.36-497.fc38 updates 16 k perl-Exporter noarch 5.77-490.fc38 fedora 31 k perl-Fcntl x86_64 1.15-497.fc38 updates 22 k perl-File-Basename noarch 2.85-497.fc38 updates 18 k perl-File-Find noarch 1.40-497.fc38 updates 26 k perl-File-Path noarch 2.18-490.fc38 fedora 35 k perl-File-Temp noarch 1:0.231.100-490.fc38 fedora 59 k perl-File-stat noarch 1.12-497.fc38 updates 18 k perl-FileHandle noarch 2.03-497.fc38 updates 17 k perl-Getopt-Long noarch 1:2.54-2.fc38 fedora 60 k perl-Getopt-Std noarch 1.13-497.fc38 updates 17 k perl-HTTP-Tiny noarch 0.086-2.fc38 updates 55 k perl-IO x86_64 1.50-497.fc38 updates 93 k perl-IO-Socket-IP noarch 0.41-492.fc38 fedora 41 k perl-IO-Socket-SSL noarch 2.081-1.fc38 fedora 227 k perl-IPC-Open3 noarch 1.22-497.fc38 updates 24 k perl-MIME-Base64 x86_64 3.16-490.fc38 fedora 30 k perl-Mozilla-CA noarch 20221114-2.fc38 fedora 12 k perl-Net-SSLeay x86_64 1.92-5.fc38 fedora 361 k perl-POSIX x86_64 2.03-497.fc38 updates 99 k perl-PathTools x86_64 3.84-490.fc38 fedora 87 k perl-Pod-Escapes noarch 1:1.07-490.fc38 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-491.fc38 fedora 86 k perl-Pod-Simple noarch 1:3.43-491.fc38 fedora 219 k perl-Pod-Usage noarch 4:2.03-4.fc38 fedora 40 k perl-Scalar-List-Utils x86_64 5:1.63-490.fc38 fedora 72 k perl-SelectSaver noarch 1.02-497.fc38 updates 13 k perl-Socket x86_64 4:2.036-2.fc38 fedora 55 k perl-Storable x86_64 1:3.26-490.fc38 fedora 97 k perl-Symbol noarch 1.09-497.fc38 updates 15 k perl-Term-ANSIColor noarch 5.01-491.fc38 fedora 47 k perl-Term-Cap noarch 1.18-1.fc38 fedora 22 k perl-Text-ParseWords noarch 3.31-490.fc38 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-1.fc38 updates 22 k perl-Time-Local noarch 2:1.300-490.fc38 fedora 33 k perl-URI noarch 5.17-2.fc38 fedora 120 k perl-base noarch 2.27-497.fc38 updates 17 k perl-constant noarch 1.33-491.fc38 fedora 23 k perl-if noarch 0.61.000-497.fc38 updates 15 k perl-interpreter x86_64 4:5.36.1-497.fc38 updates 73 k perl-libnet noarch 3.15-1.fc38 fedora 128 k perl-libs x86_64 4:5.36.1-497.fc38 updates 2.2 M perl-locale noarch 1.10-497.fc38 updates 15 k perl-mro x86_64 1.26-497.fc38 updates 30 k perl-overload noarch 1.35-497.fc38 updates 47 k perl-overloading noarch 0.02-497.fc38 updates 14 k perl-parent noarch 1:0.241-1.fc38 fedora 15 k perl-podlators noarch 1:5.01-2.fc38 fedora 125 k perl-vars noarch 1.05-497.fc38 updates 14 k pixman x86_64 0.42.2-1.fc38 fedora 285 k poppler x86_64 23.02.0-2.fc38 updates 1.2 M poppler-data noarch 0.4.11-4.fc38 fedora 2.0 M poppler-glib x86_64 23.02.0-2.fc38 updates 175 k pyproject-rpm-macros noarch 1.9.0-1.fc38 updates 42 k python-pip-wheel noarch 23.1.2-6.fc38 copr_base 1.4 M python-rpm-macros noarch 3.11-10.fc38 fedora 20 k python-setuptools-wheel noarch 67.7.2-7.fc38 copr_base 662 k python3 x86_64 3.11.5-1.fc38 updates 28 k python3-libs x86_64 3.11.5-1.fc38 updates 9.6 M python3-numpy x86_64 1:1.24.4-2.fc38 copr_base 7.7 M python3-packaging noarch 23.1-5.fc38 copr_base 108 k python3-rpm-generators noarch 14-4.fc38 updates 30 k python3-rpm-macros noarch 3.11-10.fc38 fedora 15 k qt-settings noarch 38.3-1.fc38 updates 9.2 k qt5-designer x86_64 5.15.10-1.fc38 updates 161 k qt5-doctools x86_64 5.15.10-1.fc38 updates 696 k qt5-linguist x86_64 5.15.10-1.fc38 updates 882 k qt5-qtbase x86_64 5.15.10-5.fc38 updates 3.5 M qt5-qtbase-common noarch 5.15.10-5.fc38 updates 12 k qt5-qtbase-gui x86_64 5.15.10-5.fc38 updates 6.4 M qt5-qtdeclarative x86_64 5.15.10-1.fc38 updates 4.3 M qt5-qtsvg x86_64 5.15.10-1.fc38 updates 185 k qt5-qttools x86_64 5.15.10-1.fc38 updates 40 k qt5-qttools-common noarch 5.15.10-1.fc38 updates 11 k qt5-qttools-libs-designer x86_64 5.15.10-1.fc38 updates 2.7 M qt5-qttools-libs-designercomponents x86_64 5.15.10-1.fc38 updates 789 k qt5-qttools-libs-help x86_64 5.15.10-1.fc38 updates 157 k qt5-rpm-macros noarch 5.15.10-1.fc38 updates 9.9 k rav1e-libs x86_64 0.6.6-1.fc38 updates 1.0 M rhash x86_64 1.4.3-2.fc38 fedora 194 k shared-mime-info x86_64 2.2-3.fc38 fedora 381 k spglib x86_64 1.16.1-7.fc38 copr_base 88 k svt-av1-libs x86_64 1.4.1-2.fc38 fedora 2.0 M urw-base35-bookman-fonts noarch 20200910-16.fc38 fedora 848 k urw-base35-c059-fonts noarch 20200910-16.fc38 fedora 875 k urw-base35-d050000l-fonts noarch 20200910-16.fc38 fedora 76 k urw-base35-fonts noarch 20200910-16.fc38 fedora 11 k urw-base35-fonts-common noarch 20200910-16.fc38 fedora 21 k urw-base35-gothic-fonts noarch 20200910-16.fc38 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-16.fc38 fedora 796 k urw-base35-nimbus-roman-fonts noarch 20200910-16.fc38 fedora 857 k urw-base35-nimbus-sans-fonts noarch 20200910-16.fc38 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-16.fc38 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-16.fc38 fedora 42 k urw-base35-z003-fonts noarch 20200910-16.fc38 fedora 276 k vim-filesystem noarch 2:9.0.1872-1.fc38 updates 18 k vulkan-headers noarch 1.3.243.0-2.fc38 updates 1.1 M vulkan-loader x86_64 1.3.243.0-1.fc38 updates 142 k vulkan-loader-devel x86_64 1.3.243.0-1.fc38 updates 9.3 k xapian-core-libs x86_64 1.4.23-1.fc38 updates 771 k xcb-util x86_64 0.4.1-2.fc38 fedora 19 k xcb-util-image x86_64 0.4.1-2.fc38 fedora 19 k xcb-util-keysyms x86_64 0.4.1-2.fc38 fedora 14 k xcb-util-renderutil x86_64 0.3.10-2.fc38 fedora 17 k xcb-util-wm x86_64 0.4.2-2.fc38 fedora 31 k xkeyboard-config noarch 2.38-1.fc38 fedora 963 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-fonts-ISO8859-1-100dpi noarch 7.5-35.fc38 fedora 1.1 M xorg-x11-proto-devel noarch 2022.2-3.fc38 fedora 299 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Transaction Summary =========================================================================================== Install 329 Packages Total download size: 353 M Installed size: 1.5 G Downloading Packages: (1/329): boost-1.81.0-5.fc38.x86_64.rpm 264 kB/s | 15 kB 00:00 (2/329): boost-chrono-1.81.0-5.fc38.x86_64.rpm 242 kB/s | 27 kB 00:00 (3/329): boost-container-1.81.0-5.fc38.x86_64.r 450 kB/s | 41 kB 00:00 (4/329): boost-context-1.81.0-5.fc38.x86_64.rpm 486 kB/s | 18 kB 00:00 (5/329): boost-contract-1.81.0-5.fc38.x86_64.rp 2.4 MB/s | 47 kB 00:00 (6/329): boost-coroutine-1.81.0-5.fc38.x86_64.r 826 kB/s | 21 kB 00:00 (7/329): boost-date-time-1.81.0-5.fc38.x86_64.r 1.6 MB/s | 17 kB 00:00 (8/329): boost-fiber-1.81.0-5.fc38.x86_64.rpm 1.0 MB/s | 43 kB 00:00 (9/329): boost-filesystem-1.81.0-5.fc38.x86_64. 598 kB/s | 68 kB 00:00 (10/329): boost-atomic-1.81.0-5.fc38.x86_64.rpm 61 kB/s | 21 kB 00:00 (11/329): boost-devel-1.81.0-5.fc38.x86_64.rpm 50 MB/s | 12 MB 00:00 (12/329): boost-graph-1.81.0-5.fc38.x86_64.rpm 2.2 MB/s | 153 kB 00:00 (13/329): boost-iostreams-1.81.0-5.fc38.x86_64. 666 kB/s | 43 kB 00:00 (14/329): boost-json-1.81.0-5.fc38.x86_64.rpm 10 MB/s | 111 kB 00:00 (15/329): boost-log-1.81.0-5.fc38.x86_64.rpm 26 MB/s | 494 kB 00:00 (16/329): boost-locale-1.81.0-5.fc38.x86_64.rpm 11 MB/s | 222 kB 00:00 (17/329): boost-math-1.81.0-5.fc38.x86_64.rpm 18 MB/s | 219 kB 00:00 (18/329): boost-nowide-1.81.0-5.fc38.x86_64.rpm 2.2 MB/s | 22 kB 00:00 (19/329): boost-numpy3-1.81.0-5.fc38.x86_64.rpm 3.1 MB/s | 30 kB 00:00 (20/329): boost-program-options-1.81.0-5.fc38.x 10 MB/s | 110 kB 00:00 (21/329): boost-python3-1.81.0-5.fc38.x86_64.rp 9.0 MB/s | 97 kB 00:00 (22/329): boost-random-1.81.0-5.fc38.x86_64.rpm 2.3 MB/s | 25 kB 00:00 (23/329): boost-regex-1.81.0-5.fc38.x86_64.rpm 11 MB/s | 112 kB 00:00 (24/329): boost-serialization-1.81.0-5.fc38.x86 12 MB/s | 135 kB 00:00 (25/329): boost-stacktrace-1.81.0-5.fc38.x86_64 2.7 MB/s | 31 kB 00:00 (26/329): boost-system-1.81.0-5.fc38.x86_64.rpm 1.7 MB/s | 16 kB 00:00 (27/329): boost-thread-1.81.0-5.fc38.x86_64.rpm 5.4 MB/s | 60 kB 00:00 (28/329): boost-test-1.81.0-5.fc38.x86_64.rpm 19 MB/s | 241 kB 00:00 (29/329): boost-timer-1.81.0-5.fc38.x86_64.rpm 2.3 MB/s | 25 kB 00:00 (30/329): boost-type_erasure-1.81.0-5.fc38.x86_ 3.6 MB/s | 34 kB 00:00 (31/329): boost-wave-1.81.0-5.fc38.x86_64.rpm 17 MB/s | 226 kB 00:00 (32/329): libproxy-0.4.18-6.fc38.x86_64.rpm 3.9 MB/s | 71 kB 00:00 (33/329): graphviz-8.1.0-4.fc38.x86_64.rpm 41 MB/s | 5.0 MB 00:00 (34/329): openbabel-devel-3.1.1-21.fc38.x86_64. 1.7 MB/s | 192 kB 00:00 (35/329): openbabel-libs-3.1.1-21.fc38.x86_64.r 24 MB/s | 3.7 MB 00:00 (36/329): python-pip-wheel-23.1.2-6.fc38.noarch 21 MB/s | 1.4 MB 00:00 (37/329): python-setuptools-wheel-67.7.2-7.fc38 8.7 MB/s | 662 kB 00:00 (38/329): python3-packaging-23.1-5.fc38.noarch. 4.5 MB/s | 108 kB 00:00 (39/329): spglib-1.16.1-7.fc38.x86_64.rpm 1.7 MB/s | 88 kB 00:00 (40/329): spglib-devel-1.16.1-7.fc38.x86_64.rpm 239 kB/s | 13 kB 00:00 (41/329): python3-numpy-1.24.4-2.fc38.x86_64.rp 68 MB/s | 7.7 MB 00:00 (42/329): chrpath-0.16-19.fc38.x86_64.rpm 328 kB/s | 30 kB 00:00 (43/329): clang15-resource-filesystem-15.0.7-4. 780 kB/s | 12 kB 00:00 (44/329): crypto-policies-scripts-20230301-1.gi 3.5 MB/s | 116 kB 00:00 (45/329): double-conversion-3.1.5-8.fc38.x86_64 2.9 MB/s | 49 kB 00:00 (46/329): adobe-mappings-pdf-20190401-3.fc38.no 2.5 MB/s | 698 kB 00:00 (47/329): eigen3-devel-3.4.0-9.fc38.noarch.rpm 3.5 MB/s | 1.2 MB 00:00 (48/329): expat-2.5.0-2.fc38.x86_64.rpm 3.0 MB/s | 110 kB 00:00 (49/329): fontconfig-2.14.2-1.fc38.x86_64.rpm 3.7 MB/s | 295 kB 00:00 (50/329): fonts-filesystem-2.0.5-11.fc38.noarch 499 kB/s | 8.1 kB 00:00 (51/329): freetype-2.13.0-2.fc38.x86_64.rpm 1.0 MB/s | 414 kB 00:00 (52/329): fribidi-1.0.12-3.fc38.x86_64.rpm 948 kB/s | 89 kB 00:00 (53/329): gc-8.2.2-3.fc38.x86_64.rpm 1.4 MB/s | 110 kB 00:00 (54/329): gd-2.3.3-10.fc38.x86_64.rpm 3.5 MB/s | 140 kB 00:00 (55/329): gdk-pixbuf2-2.42.10-2.fc38.x86_64.rpm 2.8 MB/s | 485 kB 00:00 (56/329): doxygen-1.9.6-7.fc38.x86_64.rpm 3.3 MB/s | 4.8 MB 00:01 (57/329): glew-devel-2.2.0-4.fc38.x86_64.rpm 2.6 MB/s | 222 kB 00:00 (58/329): glx-utils-8.5.0-1.fc38.x86_64.rpm 1.5 MB/s | 40 kB 00:00 (59/329): google-noto-fonts-common-20230201-1.f 578 kB/s | 16 kB 00:00 (60/329): gl-manpages-1.1-26.20190306.fc38.noar 2.3 MB/s | 1.2 MB 00:00 (61/329): google-noto-sans-vf-fonts-20230201-1. 1.9 MB/s | 580 kB 00:00 (62/329): graphite2-1.3.14-11.fc38.x86_64.rpm 1.5 MB/s | 95 kB 00:00 (63/329): gts-0.7.6-44.20121130.fc38.x86_64.rpm 2.6 MB/s | 240 kB 00:00 (64/329): groff-base-1.22.4-11.fc38.x86_64.rpm 2.5 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libXau-devel-1.0.11-2.fc38.x86_64.rpm 304 kB/s | 14 kB 00:00 (80/329): libXau-1.0.11-2.fc38.x86_64.rpm 434 kB/s | 32 kB 00:00 (81/329): libXext-1.3.5-2.fc38.x86_64.rpm 1.0 MB/s | 39 kB 00:00 (82/329): libXfixes-6.0.0-5.fc38.x86_64.rpm 474 kB/s | 19 kB 00:00 (83/329): libXrender-0.9.11-2.fc38.x86_64.rpm 807 kB/s | 27 kB 00:00 (84/329): libXpm-3.5.15-3.fc38.x86_64.rpm 873 kB/s | 63 kB 00:00 (85/329): libXxf86vm-1.1.5-2.fc38.x86_64.rpm 594 kB/s | 18 kB 00:00 (86/329): libaec-1.0.6-4.fc38.x86_64.rpm 1.1 MB/s | 42 kB 00:00 (87/329): libaec-devel-1.0.6-4.fc38.x86_64.rpm 260 kB/s | 12 kB 00:00 (88/329): libXt-1.2.1-4.fc38.x86_64.rpm 804 kB/s | 179 kB 00:00 (89/329): libarchive-devel-3.6.1-4.fc38.x86_64. 1.1 MB/s | 134 kB 00:00 (90/329): libb2-0.98.1-8.fc38.x86_64.rpm 991 kB/s | 25 kB 00:00 (91/329): libdatrie-0.2.13-5.fc38.x86_64.rpm 751 kB/s | 32 kB 00:00 (92/329): libavif-0.11.1-7.fc38.x86_64.rpm 905 kB/s | 84 kB 00:00 (93/329): libedit-3.1-45.20221030cvs.fc38.x86_6 1.7 MB/s | 107 kB 00:00 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libjxl-0.7.0-6.fc38.x86_64.rpm 1.2 MB/s | 1.0 MB 00:00 (109/329): liblerc-4.0.0-3.fc38.x86_64.rpm 1.1 MB/s | 202 kB 00:00 (110/329): libmpc-1.3.1-2.fc38.x86_64.rpm 1.0 MB/s | 70 kB 00:00 (111/329): libpaper-2.0.8-1.fc38.x86_64.rpm 1.0 MB/s | 26 kB 00:00 (112/329): libpciaccess-0.16-8.fc38.x86_64.rpm 1.5 MB/s | 26 kB 00:00 (113/329): libpng-1.6.37-14.fc38.x86_64.rpm 1.7 MB/s | 120 kB 00:00 (114/329): libthai-0.1.29-4.fc38.x86_64.rpm 1.1 MB/s | 213 kB 00:00 (115/329): libtool-ltdl-2.4.7-6.fc38.x86_64.rpm 1.1 MB/s | 37 kB 00:00 (116/329): libunistring-1.1-3.fc38.x86_64.rpm 1.5 MB/s | 545 kB 00:00 (117/329): libvmaf-2.3.0-5.fc38.x86_64.rpm 2.4 MB/s | 180 kB 00:00 (118/329): libxcb-1.13.1-11.fc38.x86_64.rpm 2.5 MB/s | 231 kB 00:00 (119/329): libxcb-devel-1.13.1-11.fc38.x86_64.r 3.5 MB/s | 1.4 MB 00:00 (120/329): libxkbcommon-1.5.0-2.fc38.x86_64.rpm 2.9 MB/s | 140 kB 00:00 (121/329): libxkbcommon-x11-1.5.0-2.fc38.x86_64 1.3 MB/s | 22 kB 00:00 (122/329): clang15-libs-15.0.7-4.fc38.x86_64.rp 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pcre2-utf16-10.42-1.fc38.1.x86_64.rp 1.7 MB/s | 214 kB 00:00 (138/329): perl-Carp-1.52-490.fc38.noarch.rpm 1.2 MB/s | 29 kB 00:00 (139/329): perl-Data-Dumper-2.184-491.fc38.x86_ 3.3 MB/s | 56 kB 00:00 (140/329): perl-Digest-1.20-490.fc38.noarch.rpm 953 kB/s | 25 kB 00:00 (141/329): perl-Digest-MD5-2.58-490.fc38.x86_64 1.7 MB/s | 36 kB 00:00 (142/329): perl-Encode-3.19-493.fc38.x86_64.rpm 2.8 MB/s | 1.7 MB 00:00 (143/329): perl-Exporter-5.77-490.fc38.noarch.r 1.4 MB/s | 31 kB 00:00 (144/329): perl-File-Path-2.18-490.fc38.noarch. 1.6 MB/s | 35 kB 00:00 (145/329): perl-File-Temp-0.231.100-490.fc38.no 2.6 MB/s | 59 kB 00:00 (146/329): perl-Getopt-Long-2.54-2.fc38.noarch. 2.5 MB/s | 60 kB 00:00 (147/329): perl-IO-Socket-IP-0.41-492.fc38.noar 1.9 MB/s | 41 kB 00:00 (148/329): perl-IO-Socket-SSL-2.081-1.fc38.noar 3.5 MB/s | 227 kB 00:00 (149/329): perl-MIME-Base64-3.16-490.fc38.x86_6 1.8 MB/s | 30 kB 00:00 (150/329): perl-Mozilla-CA-20221114-2.fc38.noar 736 kB/s | 12 kB 00:00 (151/329): 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Running transaction test Transaction test succeeded. 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: make-1:4.4.1-1.fc38.x86_64 257/329 Verifying : mesa-libEGL-23.1.7-1.fc38.x86_64 258/329 Verifying : mesa-libEGL-devel-23.1.7-1.fc38.x86_64 259/329 Verifying : mesa-libGL-23.1.7-1.fc38.x86_64 260/329 Verifying : mesa-libGLU-9.0.3-1.fc38.x86_64 261/329 Verifying : mesa-libGLU-devel-9.0.3-1.fc38.x86_64 262/329 Verifying : mesa-libgbm-23.1.7-1.fc38.x86_64 263/329 Verifying : mesa-libglapi-23.1.7-1.fc38.x86_64 264/329 Verifying : nspr-4.35.0-10.fc38.x86_64 265/329 Verifying : nss-3.93.0-1.fc38.x86_64 266/329 Verifying : nss-softokn-3.93.0-1.fc38.x86_64 267/329 Verifying : nss-softokn-freebl-3.93.0-1.fc38.x86_64 268/329 Verifying : nss-sysinit-3.93.0-1.fc38.x86_64 269/329 Verifying : nss-util-3.93.0-1.fc38.x86_64 270/329 Verifying : perl-AutoLoader-5.74-497.fc38.noarch 271/329 Verifying : perl-B-1.83-497.fc38.x86_64 272/329 Verifying : perl-Class-Struct-0.66-497.fc38.noarch 273/329 Verifying : perl-DynaLoader-1.52-497.fc38.x86_64 274/329 Verifying : perl-English-1.11-497.fc38.noarch 275/329 Verifying : perl-Errno-1.36-497.fc38.x86_64 276/329 Verifying : perl-Fcntl-1.15-497.fc38.x86_64 277/329 Verifying : perl-File-Basename-2.85-497.fc38.noarch 278/329 Verifying : perl-File-Find-1.40-497.fc38.noarch 279/329 Verifying : perl-File-stat-1.12-497.fc38.noarch 280/329 Verifying : perl-FileHandle-2.03-497.fc38.noarch 281/329 Verifying : perl-Getopt-Std-1.13-497.fc38.noarch 282/329 Verifying : perl-HTTP-Tiny-0.086-2.fc38.noarch 283/329 Verifying : perl-IO-1.50-497.fc38.x86_64 284/329 Verifying : perl-IPC-Open3-1.22-497.fc38.noarch 285/329 Verifying : perl-POSIX-2.03-497.fc38.x86_64 286/329 Verifying : perl-SelectSaver-1.02-497.fc38.noarch 287/329 Verifying : perl-Symbol-1.09-497.fc38.noarch 288/329 Verifying : perl-Text-Tabs+Wrap-2023.0511-1.fc38.noarch 289/329 Verifying : perl-base-2.27-497.fc38.noarch 290/329 Verifying : perl-if-0.61.000-497.fc38.noarch 291/329 Verifying : perl-interpreter-4:5.36.1-497.fc38.x86_64 292/329 Verifying : perl-libs-4:5.36.1-497.fc38.x86_64 293/329 Verifying : perl-locale-1.10-497.fc38.noarch 294/329 Verifying : perl-mro-1.26-497.fc38.x86_64 295/329 Verifying : perl-overload-1.35-497.fc38.noarch 296/329 Verifying : perl-overloading-0.02-497.fc38.noarch 297/329 Verifying : perl-vars-1.05-497.fc38.noarch 298/329 Verifying : poppler-23.02.0-2.fc38.x86_64 299/329 Verifying : poppler-glib-23.02.0-2.fc38.x86_64 300/329 Verifying : pyproject-rpm-macros-1.9.0-1.fc38.noarch 301/329 Verifying : python3-3.11.5-1.fc38.x86_64 302/329 Verifying : python3-devel-3.11.5-1.fc38.x86_64 303/329 Verifying : python3-libs-3.11.5-1.fc38.x86_64 304/329 Verifying : python3-rpm-generators-14-4.fc38.noarch 305/329 Verifying : qt-settings-38.3-1.fc38.noarch 306/329 Verifying : qt5-designer-5.15.10-1.fc38.x86_64 307/329 Verifying : qt5-doctools-5.15.10-1.fc38.x86_64 308/329 Verifying : qt5-linguist-5.15.10-1.fc38.x86_64 309/329 Verifying : qt5-qtbase-5.15.10-5.fc38.x86_64 310/329 Verifying : qt5-qtbase-common-5.15.10-5.fc38.noarch 311/329 Verifying : qt5-qtbase-devel-5.15.10-5.fc38.x86_64 312/329 Verifying : qt5-qtbase-gui-5.15.10-5.fc38.x86_64 313/329 Verifying : qt5-qtdeclarative-5.15.10-1.fc38.x86_64 314/329 Verifying : qt5-qtsvg-5.15.10-1.fc38.x86_64 315/329 Verifying : qt5-qtsvg-devel-5.15.10-1.fc38.x86_64 316/329 Verifying : qt5-qttools-5.15.10-1.fc38.x86_64 317/329 Verifying : qt5-qttools-common-5.15.10-1.fc38.noarch 318/329 Verifying : qt5-qttools-devel-5.15.10-1.fc38.x86_64 319/329 Verifying : qt5-qttools-libs-designer-5.15.10-1.fc38.x86_64 320/329 Verifying : qt5-qttools-libs-designercomponents-5.15.10-1.fc 321/329 Verifying : qt5-qttools-libs-help-5.15.10-1.fc38.x86_64 322/329 Verifying : qt5-rpm-macros-5.15.10-1.fc38.noarch 323/329 Verifying : rav1e-libs-0.6.6-1.fc38.x86_64 324/329 Verifying : vim-filesystem-2:9.0.1872-1.fc38.noarch 325/329 Verifying : vulkan-headers-1.3.243.0-2.fc38.noarch 326/329 Verifying : vulkan-loader-1.3.243.0-1.fc38.x86_64 327/329 Verifying : vulkan-loader-devel-1.3.243.0-1.fc38.x86_64 328/329 Verifying : xapian-core-libs-1.4.23-1.fc38.x86_64 329/329 Installed: adobe-mappings-cmap-20230622-1.fc38.noarch adobe-mappings-cmap-deprecated-20230622-1.fc38.noarch adobe-mappings-pdf-20190401-3.fc38.noarch annobin-docs-12.26-1.fc38.noarch annobin-plugin-gcc-12.26-1.fc38.x86_64 avahi-libs-0.8-22.fc38.x86_64 boost-1.81.0-5.fc38.x86_64 boost-atomic-1.81.0-5.fc38.x86_64 boost-chrono-1.81.0-5.fc38.x86_64 boost-container-1.81.0-5.fc38.x86_64 boost-context-1.81.0-5.fc38.x86_64 boost-contract-1.81.0-5.fc38.x86_64 boost-coroutine-1.81.0-5.fc38.x86_64 boost-date-time-1.81.0-5.fc38.x86_64 boost-devel-1.81.0-5.fc38.x86_64 boost-fiber-1.81.0-5.fc38.x86_64 boost-filesystem-1.81.0-5.fc38.x86_64 boost-graph-1.81.0-5.fc38.x86_64 boost-iostreams-1.81.0-5.fc38.x86_64 boost-json-1.81.0-5.fc38.x86_64 boost-locale-1.81.0-5.fc38.x86_64 boost-log-1.81.0-5.fc38.x86_64 boost-math-1.81.0-5.fc38.x86_64 boost-nowide-1.81.0-5.fc38.x86_64 boost-numpy3-1.81.0-5.fc38.x86_64 boost-program-options-1.81.0-5.fc38.x86_64 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libpaper-1:2.0.8-1.fc38.x86_64 libpciaccess-0.16-8.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libproxy-0.4.18-6.fc38.x86_64 libquadmath-13.2.1-1.fc38.x86_64 libquadmath-devel-13.2.1-1.fc38.x86_64 librsvg2-2.56.3-1.fc38.x86_64 libstdc++-devel-13.2.1-1.fc38.x86_64 libthai-0.1.29-4.fc38.x86_64 libtiff-4.4.0-8.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libuv-1:1.46.0-1.fc38.x86_64 libvmaf-2.3.0-5.fc38.x86_64 libwacom-2.8.0-1.fc38.x86_64 libwacom-data-2.8.0-1.fc38.noarch libwayland-client-1.22.0-1.fc38.x86_64 libwayland-server-1.22.0-1.fc38.x86_64 libwebp-1.3.1-3.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.36-1.fc38.x86_64 libxkbcommon-1.5.0-2.fc38.x86_64 libxkbcommon-x11-1.5.0-2.fc38.x86_64 libxshmfence-1.3-12.fc38.x86_64 llvm-libs-16.0.6-3.fc38.x86_64 llvm15-libs-15.0.7-4.fc38.x86_64 make-1:4.4.1-1.fc38.x86_64 mesa-libEGL-23.1.7-1.fc38.x86_64 mesa-libEGL-devel-23.1.7-1.fc38.x86_64 mesa-libGL-23.1.7-1.fc38.x86_64 mesa-libGLU-9.0.3-1.fc38.x86_64 mesa-libGLU-devel-9.0.3-1.fc38.x86_64 mesa-libgbm-23.1.7-1.fc38.x86_64 mesa-libglapi-23.1.7-1.fc38.x86_64 mkfontscale-1.2.2-3.fc38.x86_64 mmtf-cpp-devel-1.1.0-2.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 msgpack-3.1.0-11.fc38.x86_64 msgpack-devel-3.1.0-11.fc38.x86_64 mtdev-1.1.6-5.fc38.x86_64 ncurses-6.4-3.20230114.fc38.x86_64 netpbm-11.02.00-1.fc38.x86_64 nettle-3.8-3.fc38.x86_64 nspr-4.35.0-10.fc38.x86_64 nss-3.93.0-1.fc38.x86_64 nss-softokn-3.93.0-1.fc38.x86_64 nss-softokn-freebl-3.93.0-1.fc38.x86_64 nss-sysinit-3.93.0-1.fc38.x86_64 nss-util-3.93.0-1.fc38.x86_64 openbabel-devel-3.1.1-21.fc38.x86_64 openbabel-libs-3.1.1-21.fc38.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 pango-1.50.14-1.fc38.x86_64 pcre2-utf16-10.42-1.fc38.1.x86_64 perl-AutoLoader-5.74-497.fc38.noarch perl-B-1.83-497.fc38.x86_64 perl-Carp-1.52-490.fc38.noarch perl-Class-Struct-0.66-497.fc38.noarch perl-Data-Dumper-2.184-491.fc38.x86_64 perl-Digest-1.20-490.fc38.noarch perl-Digest-MD5-2.58-490.fc38.x86_64 perl-DynaLoader-1.52-497.fc38.x86_64 perl-Encode-4:3.19-493.fc38.x86_64 perl-English-1.11-497.fc38.noarch perl-Errno-1.36-497.fc38.x86_64 perl-Exporter-5.77-490.fc38.noarch perl-Fcntl-1.15-497.fc38.x86_64 perl-File-Basename-2.85-497.fc38.noarch perl-File-Find-1.40-497.fc38.noarch perl-File-Path-2.18-490.fc38.noarch perl-File-Temp-1:0.231.100-490.fc38.noarch perl-File-stat-1.12-497.fc38.noarch perl-FileHandle-2.03-497.fc38.noarch perl-Getopt-Long-1:2.54-2.fc38.noarch perl-Getopt-Std-1.13-497.fc38.noarch perl-HTTP-Tiny-0.086-2.fc38.noarch perl-IO-1.50-497.fc38.x86_64 perl-IO-Socket-IP-0.41-492.fc38.noarch perl-IO-Socket-SSL-2.081-1.fc38.noarch perl-IPC-Open3-1.22-497.fc38.noarch perl-MIME-Base64-3.16-490.fc38.x86_64 perl-Mozilla-CA-20221114-2.fc38.noarch perl-Net-SSLeay-1.92-5.fc38.x86_64 perl-POSIX-2.03-497.fc38.x86_64 perl-PathTools-3.84-490.fc38.x86_64 perl-Pod-Escapes-1:1.07-490.fc38.noarch perl-Pod-Perldoc-3.28.01-491.fc38.noarch perl-Pod-Simple-1:3.43-491.fc38.noarch perl-Pod-Usage-4:2.03-4.fc38.noarch perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 perl-SelectSaver-1.02-497.fc38.noarch perl-Socket-4:2.036-2.fc38.x86_64 perl-Storable-1:3.26-490.fc38.x86_64 perl-Symbol-1.09-497.fc38.noarch perl-Term-ANSIColor-5.01-491.fc38.noarch perl-Term-Cap-1.18-1.fc38.noarch perl-Text-ParseWords-3.31-490.fc38.noarch perl-Text-Tabs+Wrap-2023.0511-1.fc38.noarch perl-Time-Local-2:1.300-490.fc38.noarch perl-URI-5.17-2.fc38.noarch perl-base-2.27-497.fc38.noarch perl-constant-1.33-491.fc38.noarch perl-if-0.61.000-497.fc38.noarch perl-interpreter-4:5.36.1-497.fc38.x86_64 perl-libnet-3.15-1.fc38.noarch perl-libs-4:5.36.1-497.fc38.x86_64 perl-locale-1.10-497.fc38.noarch perl-mro-1.26-497.fc38.x86_64 perl-overload-1.35-497.fc38.noarch perl-overloading-0.02-497.fc38.noarch perl-parent-1:0.241-1.fc38.noarch perl-podlators-1:5.01-2.fc38.noarch perl-vars-1.05-497.fc38.noarch pixman-0.42.2-1.fc38.x86_64 poppler-23.02.0-2.fc38.x86_64 poppler-data-0.4.11-4.fc38.noarch poppler-glib-23.02.0-2.fc38.x86_64 pyproject-rpm-macros-1.9.0-1.fc38.noarch python-pip-wheel-23.1.2-6.fc38.noarch python-rpm-macros-3.11-10.fc38.noarch python-setuptools-wheel-67.7.2-7.fc38.noarch python3-3.11.5-1.fc38.x86_64 python3-devel-3.11.5-1.fc38.x86_64 python3-libs-3.11.5-1.fc38.x86_64 python3-numpy-1:1.24.4-2.fc38.x86_64 python3-packaging-23.1-5.fc38.noarch python3-rpm-generators-14-4.fc38.noarch python3-rpm-macros-3.11-10.fc38.noarch qt-settings-38.3-1.fc38.noarch qt5-designer-5.15.10-1.fc38.x86_64 qt5-doctools-5.15.10-1.fc38.x86_64 qt5-linguist-5.15.10-1.fc38.x86_64 qt5-qtbase-5.15.10-5.fc38.x86_64 qt5-qtbase-common-5.15.10-5.fc38.noarch qt5-qtbase-devel-5.15.10-5.fc38.x86_64 qt5-qtbase-gui-5.15.10-5.fc38.x86_64 qt5-qtdeclarative-5.15.10-1.fc38.x86_64 qt5-qtsvg-5.15.10-1.fc38.x86_64 qt5-qtsvg-devel-5.15.10-1.fc38.x86_64 qt5-qttools-5.15.10-1.fc38.x86_64 qt5-qttools-common-5.15.10-1.fc38.noarch qt5-qttools-devel-5.15.10-1.fc38.x86_64 qt5-qttools-libs-designer-5.15.10-1.fc38.x86_64 qt5-qttools-libs-designercomponents-5.15.10-1.fc38.x86_64 qt5-qttools-libs-help-5.15.10-1.fc38.x86_64 qt5-rpm-macros-5.15.10-1.fc38.noarch rav1e-libs-0.6.6-1.fc38.x86_64 rhash-1.4.3-2.fc38.x86_64 shared-mime-info-2.2-3.fc38.x86_64 spglib-1.16.1-7.fc38.x86_64 spglib-devel-1.16.1-7.fc38.x86_64 svt-av1-libs-1.4.1-2.fc38.x86_64 urw-base35-bookman-fonts-20200910-16.fc38.noarch urw-base35-c059-fonts-20200910-16.fc38.noarch urw-base35-d050000l-fonts-20200910-16.fc38.noarch urw-base35-fonts-20200910-16.fc38.noarch urw-base35-fonts-common-20200910-16.fc38.noarch urw-base35-gothic-fonts-20200910-16.fc38.noarch urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38.noarch urw-base35-nimbus-roman-fonts-20200910-16.fc38.noarch urw-base35-nimbus-sans-fonts-20200910-16.fc38.noarch urw-base35-p052-fonts-20200910-16.fc38.noarch urw-base35-standard-symbols-ps-fonts-20200910-16.fc38.noarch urw-base35-z003-fonts-20200910-16.fc38.noarch vim-filesystem-2:9.0.1872-1.fc38.noarch vulkan-headers-1.3.243.0-2.fc38.noarch vulkan-loader-1.3.243.0-1.fc38.x86_64 vulkan-loader-devel-1.3.243.0-1.fc38.x86_64 xapian-core-libs-1.4.23-1.fc38.x86_64 xcb-util-0.4.1-2.fc38.x86_64 xcb-util-image-0.4.1-2.fc38.x86_64 xcb-util-keysyms-0.4.1-2.fc38.x86_64 xcb-util-renderutil-0.3.10-2.fc38.x86_64 xcb-util-wm-0.4.2-2.fc38.x86_64 xkeyboard-config-2.38-1.fc38.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noarch xorg-x11-proto-devel-2022.2-3.fc38.noarch zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for avogadro2-libs-1.97.0-8.fc38.src.rpm Start: rpmbuild avogadro2-libs-1.97.0-8.fc38.src.rpm warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.qlpDVB + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf avogadrolibs-1.97.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogadrolibs-1.97.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadrolibs-1.97.0 + /usr/bin/mkdir -p SPECPARTS + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogenerators-1.97.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + unzip -qq /builddir/build/SOURCES/avogadro2-libs-molecules-master.zip + mv molecules-master molecules + tar -xf /builddir/build/SOURCES/avogadro2-libs-crystals-1.0.1.tar.gz + mv crystals-1.0.1 crystals + mv molecules/LICENSE molecules/LICENSE-molecules + echo 'Patch #0 (avogadro2-libs-set_pythonpath.patch):' Patch #0 (avogadro2-libs-set_pythonpath.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/quantuminput/CMakeLists.txt Hunk #1 succeeded at 37 (offset -4 lines). patching file avogadro/qtplugins/scriptfileformats/CMakeLists.txt Hunk #1 succeeded at 20 (offset -4 lines). Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch): + echo 'Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/insertfragment/CMakeLists.txt Patch #2 (avogadro2-libs-bug1185.patch): + echo 'Patch #2 (avogadro2-libs-bug1185.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file avogadro/io/mmtfformat.cpp Hunk #1 succeeded at 33 (offset -2 lines). Hunk #2 succeeded at 50 (offset -2 lines). + mv avogenerators-1.97.0 avogadrogenerators + mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md + sed -e 's|../avogadrogenerators|avogadrogenerators|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt + mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.T5rgmh + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.97.0 + mkdir -p build + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib64 -Wno-dev -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION:STRING=3.11 -DUSE_BOOST_PYTHON:BOOL=ON -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DSPGLIB_LIBRARY:FILEPATH=/usr/lib64/libsymspg.so -DSPGLIB_INCLUDE_DIR:PATH=/usr/include/spglib -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.97.0 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found SPGLIB: /usr/include/spglib -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found MMTF: /usr/include -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") found components: C -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found GLEW: /usr/include -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.5", minimum required is "3") We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py We have /builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/terachem.py -- Found LIBARCHIVE: /usr/include -- Found Doxygen: /usr/bin/doxygen (found version "1.9.6") found components: doxygen dot -- Configuring done (1.8s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP ENABLE_GLSL ENABLE_PYTHON INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR USE_BOOST_PYTHON USE_MOLEQUEUE -- Build files have been written to: /builddir/build/BUILD/avogadrolibs-1.97.0/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadrolibs-1.97.0 -B/builddir/build/BUILD/avogadrolibs-1.97.0/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles 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utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -MF CMakeFiles/encodefile.dir/encodefile.cxx.o.d -o CMakeFiles/encodefile.dir/encodefile.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile/encodefile.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Linking CXX executable ../../bin/encodefile cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile && /usr/bin/cmake -E cmake_link_script CMakeFiles/encodefile.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/encodefile.dir/encodefile.cxx.o -o ../../bin/encodefile make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target encodefile make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Building CXX object utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx: In function 'int main(int, char**)': /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:129:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (i = 0; i < atoms.size(); ++i) { | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:131:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 131 | if (i != atoms.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:136:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 136 | for (i = 0; i < singleBonds.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:139:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 139 | if (i != singleBonds.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:144:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 144 | for (i = 0; i < doubleBonds.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:147:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 147 | if (i != doubleBonds.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:181:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 181 | for (int j = 0; j < residueClassNames.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:184:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 184 | if (j != residueClassNames.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Linking CXX executable ../../bin/resdataparse cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata && /usr/bin/cmake -E cmake_link_script CMakeFiles/resdataparse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o ../../bin/resdataparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target resdataparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -MF CMakeFiles/struct.dir/struct.c.o.d -o CMakeFiles/struct.dir/struct.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct/struct.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Building C object thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects 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/builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o -MF CMakeFiles/gwavi.dir/fileio.c.o.d -o CMakeFiles/gwavi.dir/fileio.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi/fileio.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o -MF CMakeFiles/gwavi.dir/avi-utils.c.o.d -o CMakeFiles/gwavi.dir/avi-utils.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi/avi-utils.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Linking C static library libgwavi.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/cmake -P CMakeFiles/gwavi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gwavi.dir/link.txt --verbose=1 /usr/bin/ar qc libgwavi.a CMakeFiles/gwavi.dir/gwavi.c.o CMakeFiles/gwavi.dir/fileio.c.o "CMakeFiles/gwavi.dir/avi-utils.c.o" /usr/bin/ranlib libgwavi.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target gwavi make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core/CMakeFiles/AvogadroCore.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -MF CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr/bodrparse.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o -MF CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o.d -o CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp: In static member function 'static Avogadro::Vector3 Avogadro::Core::AtomUtilities::generateNewBondVector(const Avogadro::Core::Atom&, const std::vector, std::allocator > >&, Avogadro::Core::AtomHybridization)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp:109:10: warning: variable 'noA2' set but not used [-Wunused-but-set-variable] 109 | bool noA2 = false; | ^~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h: At global scope: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h:19:21: warning: 'unsigned int Avogadro::Core::atomValence(unsigned char, int, unsigned int)' defined but not used [-Wunused-function] 19 | static unsigned int atomValence(const unsigned char atomicNumber, | ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Linking CXX executable ../../bin/bodrparse cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr && /usr/bin/cmake -E cmake_link_script CMakeFiles/bodrparse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o ../../bin/bodrparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Built target bodrparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrow_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrow_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/arrow_vs.h arrow_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylinders_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylinders_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/cylinders_fs.h cylinders_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylinders_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylinders_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/cylinders_vs.h cylinders_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/dashedline_fs.h dashedline_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/dashedline_vs.h dashedline_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/linestrip_fs.h linestrip_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/linestrip_vs.h linestrip_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_fs.h mesh_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_opaque_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_opaque_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_opaque_fs.h mesh_opaque_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_vs.h mesh_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/spheres_fs.h spheres_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/spheres_vs.h spheres_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/CMakeFiles/AvogadroRendering.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -MF CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/c++/13/istream:41, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:6: In function 'std::operator<< >(std::basic_ostream >&, char const*)std::basic_ostream >&', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:138:69: /usr/include/c++/13/ostream:664:7: warning: 'symbol' may be used uninitialized [-Wmaybe-uninitialized] 664 | if (!__s) | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:67:15: note: 'symbol' was declared here 67 | const char* symbol; | ^~~~~~ In function 'std::operator<< >(std::basic_ostream >&, char const*)std::basic_ostream >&', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:141:67: /usr/include/c++/13/ostream:664:7: warning: 'name' may be used uninitialized [-Wmaybe-uninitialized] 664 | if (!__s) | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:68:15: note: 'name' was declared here 68 | const char* name; | ^~~~ In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:8: In member function 'Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const', inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from 'Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from 'Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from 'Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from 'Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from 'Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from 'Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from 'Eigen::DenseBase >::operator*=(double const&)' at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:107:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: 'MEM[(double &)&pos3d + 16]' may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:69:11: note: 'MEM[(double &)&pos3d + 16]' was declared here 69 | Vector3 pos3d; | ^~~~~ In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:164:76: /usr/include/c++/13/ostream:223:25: warning: 'MEM[(Scalar &)&fpos3d]' may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:172:76: /usr/include/c++/13/ostream:223:25: warning: 'MEM[(Scalar &)&fpos3d + 8]' may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d + 8]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:180:76: /usr/include/c++/13/ostream:223:25: warning: 'MEM[(Scalar &)&fpos3d + 16]' may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d + 16]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -MF CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -MF CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/c++/13/vector:66, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:6: In member function 'std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)', inlined from 'Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:676:16, inlined from 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:666:6: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72: /usr/include/c++/13/bits/vector.tcc: In function 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)': /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type 'const struct value_type &' to 'std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)' declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:676:16: note: '' declared here 676 | output.resize(coords.size()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In member function 'std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)', inlined from 'Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:647:16, inlined from 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:640:6: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In function 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)': /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type 'const struct value_type &' to 'std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)' declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:647:16: note: '' declared here 647 | coords.resize(molecule.atomCount()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp: In member function 'virtual Avogadro::Vector3f Avogadro::Rendering::BSplineGeometry::computeCurvePoint(float, const std::__cxx11::list&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp:54:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 54 | else if (startIndex > size - 2 * lookahead) startIndex = size - 2 * lookahead; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:12: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8, inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&vert1].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8, inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&vert2].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -MF CMakeFiles/AvogadroCore.dir/cube.cpp.o.d -o CMakeFiles/AvogadroCore.dir/cube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -MF CMakeFiles/AvogadroCore.dir/elements.cpp.o.d -o CMakeFiles/AvogadroCore.dir/elements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -MF CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp: In member function 'Avogadro::Core::Dihedral Avogadro::Core::DihedralIterator::begin()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:38:16: warning: unused variable 'd' [-Wunused-variable] 38 | Index a, d; | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp: In member function 'Avogadro::Core::Dihedral Avogadro::Core::DihedralIterator::operator++()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:118:18: warning: unused variable 'd' [-Wunused-variable] 118 | Index a, d; | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:74:9: warning: unused variable 'count' [-Wunused-variable] 74 | Index count = m_mol->atomCount(); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o -MF CMakeFiles/AvogadroRendering.dir/camera.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -MF CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o.d -o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:56:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:52:23: note: 'vert1' declared here 52 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:56:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:52:23: note: 'vert1' declared here 52 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:62:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:58:23: note: 'vert2' declared here 58 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:62:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:58:23: note: 'vert2' declared here 58 | ColorNormalVertex vert2; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:253, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:12: In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous]' was declared here 80 | Vector3f previous; | ^~~~~~~~ In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous + 4]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous + 4]' was declared here 80 | Vector3f previous; | ^~~~~~~~ In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous + 8]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous + 8]' was declared here 80 | Vector3f previous; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -MF CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -MF CMakeFiles/AvogadroCore.dir/graph.cpp.o.d -o CMakeFiles/AvogadroCore.dir/graph.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function 'void Avogadro::Core::Graph::updateSubgraphs() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:532:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 532 | for (int i = 0; i < m_subgraphToVertices.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function 'Avogadro::Core::Graph::removeEdge(unsigned long, unsigned long)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:311:5: warning: 'edgeIndex' may be used uninitialized [-Wmaybe-uninitialized] 311 | if (m_edgeMap[b][i] == edgeIndex) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:299:10: note: 'edgeIndex' was declared here 299 | size_t edgeIndex; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function 'Avogadro::Core::Graph::swapEdgeIndices(unsigned long, unsigned long)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:421:17: warning: 'MEM[(long unsigned int * &)&changeTo2]' may be used uninitialized [-Wmaybe-uninitialized] 421 | *changeTo2[0] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:392:26: note: 'MEM[(long unsigned int * &)&changeTo2]' was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:422:17: warning: 'MEM[(long unsigned int * &)&changeTo2 + 8]' may be used uninitialized [-Wmaybe-uninitialized] 422 | *changeTo2[1] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:392:26: note: 'MEM[(long unsigned int * &)&changeTo2 + 8]' was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:423:17: warning: 'MEM[(long unsigned int * &)&changeTo1]' may be used uninitialized [-Wmaybe-uninitialized] 423 | *changeTo1[0] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:405:26: note: 'MEM[(long unsigned int * &)&changeTo1]' was declared here 405 | std::array changeTo1; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:424:17: warning: 'MEM[(long unsigned int * &)&changeTo1 + 8]' may be used uninitialized [-Wmaybe-uninitialized] 424 | *changeTo1[1] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:405:26: note: 'MEM[(long unsigned int * &)&changeTo1 + 8]' was declared here 405 | std::array changeTo1; | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o -MF CMakeFiles/AvogadroCore.dir/layer.cpp.o.d -o CMakeFiles/AvogadroCore.dir/layer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:117:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:110:25: note: 'vert' declared here 110 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:117:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:110:25: note: 'vert' declared here 110 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:120:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:111:25: note: 'vert2' declared here 111 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:120:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:111:25: note: 'vert2' declared here 111 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -MF CMakeFiles/AvogadroCore.dir/layermanager.cpp.o.d -o CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -MF CMakeFiles/AvogadroCore.dir/mesh.cpp.o.d -o CMakeFiles/AvogadroCore.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:6: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::Core::Mesh::smooth(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:189:46: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.195376].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp: In member function 'Avogadro::Core::Mesh::smooth(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:189:46: note: '' declared here 189 | Array planarList(m_vertices.size()); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -MF CMakeFiles/AvogadroRendering.dir/drawable.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -MF CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o -MF CMakeFiles/AvogadroRendering.dir/node.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/node.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -MF CMakeFiles/AvogadroCore.dir/molecule.cpp.o.d -o CMakeFiles/AvogadroCore.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h: In copy constructor 'Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:734:24: warning: 'Avogadro::Core::Molecule::m_atomicNumbers' will be initialized after [-Wreorder] 734 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727:18: warning: 'short unsigned int Avogadro::Core::Molecule::m_hallNumber' [-Wreorder] 727 | unsigned short m_hallNumber = 0; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:34:1: warning: when initialized here [-Wreorder] 34 | Molecule::Molecule(const Molecule& other) | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h: In constructor 'Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:734:24: warning: 'Avogadro::Core::Molecule::m_atomicNumbers' will be initialized after [-Wreorder] 734 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727:18: warning: 'short unsigned int Avogadro::Core::Molecule::m_hallNumber' [-Wreorder] 727 | unsigned short m_hallNumber = 0; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:75:1: warning: when initialized here [-Wreorder] 75 | Molecule::Molecule(Molecule&& other) noexcept | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp: In member function 'void Avogadro::Core::Molecule::setPartialCharges(const std::string&, const Avogadro::MatrixX&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:248:20: warning: comparison of integer expressions of different signedness: 'Eigen::EigenBase >::Index' {aka 'long int'} and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 248 | if (value.size() != atomCount()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o -MF CMakeFiles/AvogadroCore.dir/mutex.cpp.o.d -o CMakeFiles/AvogadroCore.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o -MF CMakeFiles/AvogadroRendering.dir/scene.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o -MF CMakeFiles/AvogadroRendering.dir/shader.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/shader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -MF CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o.d -o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o -MF CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o.d -o CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -MF CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp: In member function 'bool Avogadro::Rendering::ShaderProgram::setTextureSampler(const std::string&, const Avogadro::Rendering::Texture2D&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp:280:59: warning: typedef 'TMapIter' locally defined but not used [-Wunused-local-typedefs] 280 | typedef std::map::const_iterator TMapIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:90:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:92:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:94:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:96:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/visitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp: In member function 'void Avogadro::Rendering::VRMLVisitor::begin()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:62:12: warning: variable 'cameraX' set but not used [-Wunused-but-set-variable] 62 | Vector3f cameraX = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:64:12: warning: variable 'cameraY' set but not used [-Wunused-but-set-variable] 64 | Vector3f cameraY = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:66:12: warning: variable 'cameraZ' set but not used [-Wunused-but-set-variable] 66 | Vector3f cameraZ = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:71:12: warning: variable 'light0pos' set but not used [-Wunused-but-set-variable] 71 | Vector3f light0pos = | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1156:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1158:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1160:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1154:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o -MF CMakeFiles/AvogadroCore.dir/residue.cpp.o.d -o CMakeFiles/AvogadroCore.dir/residue.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp: In function '__static_initialization_and_destruction_0()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 162 | } // namespace Avogadro | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -MF CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o.d -o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.cpp:50:8: warning: 'std::size_t Avogadro::Core::{anonymous}::DistanceMatrix::operator()(std::size_t, std::size_t) const' defined but not used [-Wunused-function] 50 | size_t DistanceMatrix::operator()(size_t i, size_t j) const | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Linking CXX shared library ../../lib/libAvogadroRendering.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroRendering.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroRendering.so.1 -o ../../lib/libAvogadroRendering.so.1.97.0 CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o CMakeFiles/AvogadroRendering.dir/camera.cpp.o CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/node.cpp.o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/scene.cpp.o CMakeFiles/AvogadroRendering.dir/shader.cpp.o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroRendering.so.1.97.0 ../../lib/libAvogadroRendering.so.1 ../../lib/libAvogadroRendering.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Built target AvogadroRendering make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -MF CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o.d -o CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp: In member function 'void Avogadro::Core::SecondaryStructureAssigner::assign(Avogadro::Core::Molecule*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:63:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 63 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:113:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 113 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:131:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 131 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp: In member function 'void Avogadro::Core::SecondaryStructureAssigner::assignBackboneHydrogenBonds()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:217:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 217 | for (unsigned int i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:221:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 221 | for (unsigned int j = i + 1; j < n; ++j) { | ~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -MF CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -MF CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o.d -o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -MF CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o.d -o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -MF CMakeFiles/AvogadroCore.dir/unitcell.cpp.o.d -o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -MF CMakeFiles/AvogadroCore.dir/variantmap.cpp.o.d -o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -MF CMakeFiles/AvogadroCore.dir/version.cpp.o.d -o CMakeFiles/AvogadroCore.dir/version.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/version.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -MF CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o.d -o CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -MF CMakeFiles/AvogadroCore.dir/avospglib.cpp.o.d -o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -MF CMakeFiles/AvogadroCore.dir/slaterset.cpp.o.d -o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Linking CXX shared library ../../lib/libAvogadroCore.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCore.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCore.so.1 -o ../../lib/libAvogadroCore.so.1.97.0 CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o CMakeFiles/AvogadroCore.dir/cube.cpp.o CMakeFiles/AvogadroCore.dir/elements.cpp.o CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o CMakeFiles/AvogadroCore.dir/graph.cpp.o CMakeFiles/AvogadroCore.dir/layer.cpp.o CMakeFiles/AvogadroCore.dir/layermanager.cpp.o CMakeFiles/AvogadroCore.dir/mesh.cpp.o CMakeFiles/AvogadroCore.dir/molecule.cpp.o CMakeFiles/AvogadroCore.dir/mutex.cpp.o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o CMakeFiles/AvogadroCore.dir/residue.cpp.o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o CMakeFiles/AvogadroCore.dir/version.cpp.o CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libsymspg.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCore.so.1.97.0 ../../lib/libAvogadroCore.so.1 ../../lib/libAvogadroCore.so /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp: In function '__static_initialization_and_destruction_0': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 162 | } // namespace Avogadro | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Built target AvogadroCore make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/depend /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc/CMakeFiles/AvogadroCalc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o -MF CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o -MF CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -MF CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h: In constructor 'Avogadro::Calc::DefaultModel::DefaultModel(const std::string&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:80:15: warning: 'Avogadro::Calc::DefaultModel::m_identifier' will be initialized after [-Wreorder] 80 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:18:35: warning: base 'Avogadro::Calc::ChargeModel' [-Wreorder] 18 | : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:17:1: warning: when initialized here [-Wreorder] 17 | DefaultModel::DefaultModel(const std::string& id) | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Linking CXX shared library ../../lib/libAvogadroCalc.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCalc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCalc.so.1 -o ../../lib/libAvogadroCalc.so.1.97.0 CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroCore.so.1.97.0 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCalc.so.1.97.0 ../../lib/libAvogadroCalc.so.1 ../../lib/libAvogadroCalc.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Built target AvogadroCalc make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/fileformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp: In function 'void Avogadro::Io::{anonymous}::removeFromMap(Map&, const VectorOfKeys&, const ValueType&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp:166:49: warning: typedef 'KeysIter' locally defined but not used [-Wunused-local-typedefs] 166 | typedef typename VectorOfKeys::const_iterator KeysIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp: In member function 'Avogadro::Io::GromacsFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp:141:39: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized] 141 | int atomicNum = r->getAtomicNumber(value); | ~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp:57:12: note: 'r' was declared here 57 | Residue* r; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp: In member function 'Avogadro::Io::PdbFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp:148:9: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized] 148 | if (r) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp:46:12: note: 'r' was declared here 46 | Residue* r; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/trrformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:10: In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:8: note: 'a' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'b' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:11: note: 'b' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'c' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:14: note: 'c' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'alpha' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:17: note: 'alpha' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~~ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'beta' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:24: note: 'beta' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'gamma' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:30: note: 'gamma' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp: In member function 'virtual bool Avogadro::Io::LammpsTrajectoryFormat::read(std::istream&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:51:25: warning: variable 'id_idx' set but not used [-Wunused-but-set-variable] 51 | type_idx = -1, id_idx = -1; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:263:5: warning: 'numAtoms2' may be used uninitialized [-Wmaybe-uninitialized] 263 | if (numAtoms2 != numAtoms) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:226:10: note: 'numAtoms2' was declared here 226 | size_t numAtoms2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp: In member function 'Avogadro::Io::LammpsDataFormat::write(std::basic_ostream >&, Avogadro::Core::Molecule const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'xmin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:10: note: 'xmin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'xmax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:16: note: 'xmax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'ymin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:22: note: 'ymin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'ymax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:28: note: 'ymax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'zmin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:34: note: 'zmin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'zmax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:40: note: 'zmax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Linking CXX shared library ../../lib/libAvogadroIO.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroIO.so.1 -o ../../lib/libAvogadroIO.so.1.97.0 CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o CMakeFiles/AvogadroIO.dir/trrformat.cpp.o CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroCore.so.1.97.0 ../../thirdparty/struct/libstruct.a /usr/lib64/libhdf5.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroIO.so.1 ../../lib/libAvogadroIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Built target AvogadroIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -MF CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o.d -o CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/cjsontocml.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Linking CXX executable ../../bin/avocjsontocml cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avocjsontocml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -o ../../bin/avocjsontocml -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Built target avocjsontocml make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Building CXX object avogadro/command/CMakeFiles/avobabel.dir/avobabel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/avobabel.dir/avobabel.cpp.o -MF CMakeFiles/avobabel.dir/avobabel.cpp.o.d -o CMakeFiles/avobabel.dir/avobabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/avobabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Linking CXX executable ../../bin/avobabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avobabel.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/avobabel.dir/avobabel.cpp.o -o ../../bin/avobabel -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Built target avobabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Automatic MOC for target AvogadroQtGui cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.h" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentatom.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentbond.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.h" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.h" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.h" AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.cpp" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Built target AvogadroQtGui_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Generating ui_customelementdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Generating qrc_qtgui.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/qtgui.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/backgroundfileformat.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:18: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/multiviewwidget.h:33:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 33 | explicit MultiViewWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qwidget.h:43, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:11: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp: In member function 'virtual void Avogadro::QtGui::ElementDetail::paint(QPainter*, const QStyleOptionGraphicsItem*, QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp:72:29: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 72 | int pixelWidth = fm2.width(symbol); | ~~~~~~~~~^~~~~~~~ In file included from /usr/include/qt5/QtGui/QFontMetrics:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp:12: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:8: In member function 'Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const', inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from 'Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from 'Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from 'Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from 'Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from 'Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from 'Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from 'Eigen::DenseBase >::operator*=(double const&)' at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from 'Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: 'MEM [(struct DenseStorage *)&position + 16B]' may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp: In member function 'Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: 'MEM [(struct DenseStorage *)&position + 16B]' was declared here 133 | Vector3 position; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp: In static member function 'static QString Avogadro::QtGui::FileBrowseWidget::searchSystemPathForFile(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:55: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 170 | .split(pathSplitter, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:6: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:55: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 170 | .split(pathSplitter, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:31: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 169 | QStringList paths = env.value(QStringLiteral("PATH")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .split(pathSplitter, QString::SkipEmptyParts); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp: In static member function 'static QString Avogadro::QtGui::FileFormatDialog::generateFilterString(const std::vector&, FilterStringOptions)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:227:28: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 227 | if (!formatMap.values(name).contains(ext)) { | ~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/qt5/QtCore/qvariant.h:47, from /usr/include/qt5/QtGui/qtextformat.h:48, from /usr/include/qt5/QtGui/qtextcursor.h:46, from /usr/include/qt5/QtWidgets/qlineedit.h:45, from /usr/include/qt5/QtWidgets/qinputdialog.h:45, from /usr/include/qt5/QtWidgets/QInputDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:11: /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:228:30: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 228 | formatMap.insertMulti(name, ext); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qfiledialog.h:43, from /usr/include/qt5/QtWidgets/QFileDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:247:53: warning: 'QList QMap::uniqueKeys() const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 247 | foreach (const QString& desc, formatMap.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:249:52: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 249 | QStringList formatExtensions = formatMap.values(desc); | ~~~~~~~~~~~~~~~~^~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp: In member function 'virtual void Avogadro::QtGui::GenericHighlighter::highlightBlock(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp:70:33: warning: typedef 'RuleIter' locally defined but not used [-Wunused-local-typedefs] 70 | typedef QList::iterator RuleIter; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp: In member function 'void Avogadro::QtGui::GenericHighlighter::Rule::apply(const QString&, Avogadro::QtGui::GenericHighlighter&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp:78:36: warning: typedef 'PatternIter' locally defined but not used [-Wunused-local-typedefs] 78 | typedef QList::iterator PatternIter; | ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Linking CXX shared library ../../lib/libAvogadroQuantumIO.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQuantumIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQuantumIO.so.1 -o ../../lib/libAvogadroQuantumIO.so.1.97.0 CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroQuantumIO.so.1 ../../lib/libAvogadroQuantumIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Built target AvogadroQuantumIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp: In static member function 'static void Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const Avogadro::QtGui::RWAtom&, int, std::vector, std::allocator > >&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp:230:13: warning: unused variable 'explicitBonds' [-Wunused-variable] 230 | const int explicitBonds = bonds.size(); | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/command/CMakeFiles/qube.dir/qube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/qube.dir/qube.cpp.o -MF CMakeFiles/qube.dir/qube.cpp.o.d -o CMakeFiles/qube.dir/qube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/qube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Linking CXX executable ../../bin/qube cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../bin/qube -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Built target qube make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp: In member function 'void Avogadro::QtGui::InterfaceWidget::showError(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp:78:32: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 78 | int charWidth = metrics.width(QStringLiteral("i7OPlmWn9/")) / 10; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'virtual QVariant Avogadro::QtGui::LayerModel::data(const QModelIndex&, int) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 59 | if (idx.row() == names.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:80:21: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 80 | if (layer == static_cast(getMoleculeLayer().activeLayer())) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'virtual QModelIndex Avogadro::QtGui::LayerModel::index(int, int, const QModelIndex&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:161:25: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 161 | if (row >= 0 && row <= m_item) | ~~~~^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'void Avogadro::QtGui::LayerModel::removeItem(int, Avogadro::QtGui::RWMolecule*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:210:11: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 210 | if (row <= m_item) { | ~~~~^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h: In constructor 'Avogadro::QtGui::Molecule::Molecule(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:262:15: warning: 'Avogadro::QtGui::Molecule::m_undoMolecule' will be initialized after [-Wreorder] 262 | RWMolecule* m_undoMolecule; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:17:65: warning: base 'Avogadro::Core::Molecule' [-Wreorder] 17 | m_undoMolecule(new RWMolecule(*this, this)), Core::Molecule() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:15:1: warning: when initialized here [-Wreorder] 15 | Molecule::Molecule(QObject* parent_) | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:33:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 33 | explicit MultiViewWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qwidget.h:43, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:11: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h: In member function 'Avogadro::QtGui::ContainerWidget* Avogadro::QtGui::MultiViewWidget::createContainer(QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/qrc_qtgui.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Linking CXX shared library ../../lib/libAvogadroQtGui.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtGui.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtGui.so.1 -o ../../lib/libAvogadroQtGui.so.1.97.0 CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroIO.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtGui.so.1.97.0 ../../lib/libAvogadroQtGui.so.1 ../../lib/libAvogadroQtGui.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtGui make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Automatic MOC for target AvogadroQtOpenGL cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h" /usr/lib64/qt5/bin/moc -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h" /usr/lib64/qt5/bin/moc -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtOpenGL_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target QTAIMScenePlugin_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target AvogadroMoleQueue_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmol.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Built target ThreeDMol_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/applycolors.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Built target ApplyColors_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bonding.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target Bonding_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target Cartoons_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target CoordinateEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste/copypaste.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target CopyPaste_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target CrystalScene_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystal.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Crystal_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements/customelements.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target CustomElements_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb/fetchpdb.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target FetchPDB_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Editor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Focus_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens/hydrogens.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Hydrogens_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target NucleicInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/importpqr.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Built target ImportPQR_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target InsertFragment_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target Label_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/labeleditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LabelEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LammpsInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LineFormatInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularproperties.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Built target MolecularProperties_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases/networkdatabases.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target NetworkDatabases_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/configdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/girderrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochem.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/configdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/girderrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochem.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationsubmitter.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationwatcher.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/configdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/girderrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/girderrequest.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/listmoleculesmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/mongochem.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochem.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target MongoChem_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target OpenMMInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target OpenMMInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obfileformat.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target OpenBabel_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target PlayerTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target POVRay_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target PropertyTables cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertytables.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target PropertyTables_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target ResetView_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/SelectPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Select_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup/spacegroup.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target SpaceGroup_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target SVG_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/spectra.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Spectra_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target commands cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target commands_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target VRML_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptcharges.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target ScriptFileFormats_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target ScriptCharges_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target BallStick_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target PluginDownloader cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/plugindownloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target PluginDownloader_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/ForcePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Built target Force_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CloseContacts_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target Licorice_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Meshes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target NonCovalent_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target VanDerWaals_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target VanDerWaalsAO_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Wireframe_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target QTAIMExtension_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Built target OverlayAxes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_molequeuewidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_inputgeneratordialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_inputgeneratorwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_molequeuedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/../../../../../avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp: In function 'Qt::Alignment {anonymous}::textPropertiesToAlignment(const Avogadro::Rendering::TextProperties&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp:32:26: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::AlignmentFlag; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 32 | Qt::Alignment result = nullptr; | ^~~~~~~ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtGui/qfont.h:43, from /usr/include/qt5/QtGui/QFont:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp:10: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Linking CXX shared library ../../lib/libAvogadroQtOpenGL.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtOpenGL.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o ../../lib/libAvogadroQtOpenGL.so.1.97.0 CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroRendering.so.1.97.0 ../../lib/libAvogadroQtGui.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtOpenGL.so.1.97.0 ../../lib/libAvogadroQtOpenGL.so.1 ../../lib/libAvogadroQtOpenGL.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target AvogadroQtOpenGL make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp: In member function 'void Avogadro::MoleQueue::InputGeneratorWidget::showError(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp:398:32: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 398 | int charWidth = metrics.width("i7OPlmWn9/") / 10; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMScenePlugin.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMScenePlugin.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target QTAIMScenePlugin make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Generating ui_3dmoldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ThreeDMol.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ThreeDMol.a CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ThreeDMol.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target ThreeDMol make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Generating ui_chargedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ui_chargedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/chargedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/applycolors.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Linking CXX shared library ../../lib/libAvogadroMoleQueue.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroMoleQueue.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o ../../lib/libAvogadroMoleQueue.so.1.97.0 CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroQtGui.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Network.so.5.15.10 ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroMoleQueue.so.1.97.0 ../../lib/libAvogadroMoleQueue.so.1 ../../lib/libAvogadroMoleQueue.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target AvogadroMoleQueue make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target BondCentric_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Generating ui_bondingdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/ui_bondingdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bondingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ApplyColors.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ApplyColors.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target ApplyColors make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bonding.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Bonding.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Bonding.a CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o CMakeFiles/Bonding.dir/bonding.cpp.o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Bonding.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Built target Bonding make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Generating ui_coordinateeditordialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp:15: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp: In member function 'void Avogadro::QtPlugins::LayerCartoon::setupWidget(Avogadro::QtPlugins::Cartoons*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp:111:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 111 | for (size_t i = 0; i < boxesText.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -MF CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o.d -o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cartoons.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -P CMakeFiles/Cartoons.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cartoons.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cartoons.a CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o CMakeFiles/Cartoons.dir/cartoons.cpp.o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cartoons.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Built target Cartoons make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function 'QString Avogadro::QtPlugins::CoordinateEditorDialog::detectInputFormat() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:64: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:6: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:64: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:37: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ In member function '__ct ', inlined from 'QVector<(anonymous namespace)::AtomStruct>::append((anonymous namespace)::AtomStruct const&)' at /usr/include/qt5/QtCore/qvector.h:793:13, inlined from 'QVector<(anonymous namespace)::AtomStruct>::operator<<((anonymous namespace)::AtomStruct const&)' at /usr/include/qt5/QtCore/qvector.h:293:13, inlined from 'Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:476:28: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:93:8: warning: 'atom.atomicNumber' may be used uninitialized [-Wmaybe-uninitialized] 93 | struct AtomStruct | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function 'Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:341:16: note: 'atom.atomicNumber' was declared here 341 | AtomStruct atom; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp: In constructor 'Avogadro::QtPlugins::CoordinateTextEdit::CoordinateTextEdit(QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp:23:60: warning: 'const QBrush& QPalette::foreground() const' is deprecated: Use QPalette::windowText() instead [-Wdeprecated-declarations] 23 | m_unmarkedFormat.setForeground(qApp->palette().foreground().color()); | ^ In file included from /usr/include/qt5/QtWidgets/qwidget.h:48, from /usr/include/qt5/QtWidgets/qframe.h:44, from /usr/include/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/qt5/QtWidgets/qtextedit.h:44, from /usr/include/qt5/QtWidgets/QTextEdit:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp:6: /usr/include/qt5/QtGui/qpalette.h:147:26: note: declared here 147 | inline const QBrush &foreground() const { return windowText(); } | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -MF CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste/copypaste.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CoordinateEditor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -P CMakeFiles/CoordinateEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_link_script CMakeFiles/CoordinateEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CoordinateEditor.a CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CoordinateEditor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target CoordinateEditor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Generating ui_volumescalingdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Generating ui_importcrystaldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Generating ui_unitcelldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CopyPaste.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -P CMakeFiles/CopyPaste.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopyPaste.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CopyPaste.a CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o CMakeFiles/CopyPaste.dir/copypaste.cpp.o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CopyPaste.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target CopyPaste make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -MF CMakeFiles/CrystalScene.dir/crystalscene.cpp.o.d -o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/c++/13/vector:66, from /usr/include/c++/13/functional:64, from /usr/include/eigen3/Eigen/Core:85, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:6: In member function 'std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)', inlined from 'Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from 'Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:79:17: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72: /usr/include/c++/13/bits/vector.tcc: In member function 'Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)': /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type 'const struct value_type &' to 'std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)' declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:79:17: note: '' declared here 79 | strip.resize(2); | ~~~~~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -MF CMakeFiles/Crystal.dir/crystal.cpp.o.d -o CMakeFiles/Crystal.dir/crystal.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystal.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CrystalScene.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/CrystalScene.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/CrystalScene.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CrystalScene.a CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CrystalScene.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target CrystalScene make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -MF CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o.d -o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -MF CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements/customelements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o -MF CMakeFiles/Crystal.dir/supercelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/supercelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CustomElements.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target CustomElements make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Generating ui_editortoolwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/ui_editortoolwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Generating qrc_editor.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -MF CMakeFiles/Crystal.dir/unitcelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp: In static member function 'static void Avogadro::QtPlugins::UnitCellDialog::initializeMatrixEditor(QPlainTextEdit*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:308:35: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 308 | int minWidth = 3 * metrics.width('0') * (MATRIX_WIDTH + 1); | ~~~~~~~~~~~~~^~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp: In static member function 'static Avogadro::Matrix3 Avogadro::QtPlugins::UnitCellDialog::stringToMatrix(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:58: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:58: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:36: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -MF CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o.d -o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -MF CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o.d -o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Crystal.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/Crystal.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/Crystal.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Crystal.a CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o CMakeFiles/Crystal.dir/crystal.cpp.o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o CMakeFiles/Crystal.dir/supercelldialog.cpp.o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Crystal.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Built target Crystal make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -MF CMakeFiles/Editor.dir/editor.cpp.o.d -o CMakeFiles/Editor.dir/editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.cpp:19: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o -MF CMakeFiles/Editor.dir/editortoolwidget.cpp.o.d -o CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp: In member function 'void Avogadro::QtPlugins::EditorToolWidget::updateElementCombo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp:111:8: warning: 'void qSort(Container&) [with Container = QList]' is deprecated: Use std::sort [-Wdeprecated-declarations] 111 | qSort(allElements); | ~~~~~^~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qlist.h:43, from /usr/include/qt5/QtCore/qobject.h:49, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp:6: /usr/include/qt5/QtCore/qalgorithms.h:188:46: note: declared here 188 | QT_DEPRECATED_X("Use std::sort") inline void qSort(Container &c) | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o -MF CMakeFiles/Editor.dir/qrc_editor.cpp.o.d -o CMakeFiles/Editor.dir/qrc_editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/qrc_editor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -MF CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o.d -o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb/fetchpdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/FetchPDB.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -P CMakeFiles/FetchPDB.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/FetchPDB.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/FetchPDB.a CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/FetchPDB.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target FetchPDB make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -MF CMakeFiles/Editor.dir/EditorPlugin.cpp.o.d -o CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Editor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -P CMakeFiles/Editor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Editor.a CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o CMakeFiles/Editor.dir/editor.cpp.o CMakeFiles/Editor.dir/editortoolwidget.cpp.o CMakeFiles/Editor.dir/qrc_editor.cpp.o CMakeFiles/Editor.dir/EditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Editor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target Editor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp:2: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -MF CMakeFiles/Hydrogens.dir/hydrogens.cpp.o.d -o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens/hydrogens.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o -MF CMakeFiles/Focus.dir/focus.cpp.o.d -o CMakeFiles/Focus.dir/focus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -MF CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o.d -o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Hydrogens.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -P CMakeFiles/Hydrogens.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_link_script CMakeFiles/Hydrogens.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Hydrogens.a CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Hydrogens.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target Hydrogens make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Generating ui_pqrwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ui_pqrwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o -MF CMakeFiles/Focus.dir/FocusPlugin.cpp.o.d -o CMakeFiles/Focus.dir/FocusPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Focus.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -P CMakeFiles/Focus.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_link_script CMakeFiles/Focus.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Focus.a CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o CMakeFiles/Focus.dir/focus.cpp.o CMakeFiles/Focus.dir/FocusPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Focus.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target Focus make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Generating ui_insertdnadialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/ui_insertdnadialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdnadialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o -MF CMakeFiles/ImportPQR.dir/importpqr.cpp.o.d -o CMakeFiles/ImportPQR.dir/importpqr.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/importpqr.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o -MF CMakeFiles/NucleicInput.dir/insertdna.cpp.o.d -o CMakeFiles/NucleicInput.dir/insertdna.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h: In constructor 'Avogadro::QtPlugins::InsertDna::InsertDna(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h:55:19: warning: 'Avogadro::QtPlugins::InsertDna::m_reader' will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h:54:20: warning: 'Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertDna::m_molecule' [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:39:1: warning: when initialized here [-Wreorder] 39 | InsertDna::InsertDna(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp: In member function 'void Avogadro::QtPlugins::InsertDna::performInsert()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:208:10: warning: unused variable 'success' [-Wunused-variable] 208 | bool success = m_reader->readString(sequence.toStdString(), newMol); | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NucleicInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -P CMakeFiles/NucleicInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NucleicInput.a CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o CMakeFiles/NucleicInput.dir/insertdna.cpp.o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NucleicInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target NucleicInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Generating ui_insertfragmentdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/insertfragment/insertfragment.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp: In member function 'QString Avogadro::QtPlugins::PQRRequest::molSelected(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp:77:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 77 | if (results.empty() || num > results.size()) | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp: In member function 'float Avogadro::QtPlugins::PQRRequest::getMolMass(QString)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp:205:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 205 | for (int i = 0; i < str.length(); i++) { | ~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ImportPQR.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -P CMakeFiles/ImportPQR.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_link_script CMakeFiles/ImportPQR.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ImportPQR.a CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o CMakeFiles/ImportPQR.dir/importpqr.cpp.o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ImportPQR.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target ImportPQR make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragment.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h: In constructor 'Avogadro::QtPlugins::InsertFragment::InsertFragment(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:50:25: warning: 'Avogadro::QtPlugins::InsertFragment::m_crystalDialog' will be initialized after [-Wreorder] 50 | InsertFragmentDialog* m_crystalDialog; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:49:25: warning: 'Avogadro::QtPlugins::InsertFragmentDialog* Avogadro::QtPlugins::InsertFragment::m_moleculeDialog' [-Wreorder] 49 | InsertFragmentDialog* m_moleculeDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:55:19: warning: 'Avogadro::QtPlugins::InsertFragment::m_reader' will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:54:20: warning: 'Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertFragment::m_molecule' [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h: In member function 'void Avogadro::QtPlugins::InsertFragment::showDialog()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qdialog.h:43, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -MF CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o.d -o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/InsertFragment.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -P CMakeFiles/InsertFragment.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_link_script CMakeFiles/InsertFragment.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/InsertFragment.a CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/InsertFragment.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target InsertFragment make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Generating qrc_label.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/lib64/qt5/bin/rcc --name label --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/qrc_label.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o -MF CMakeFiles/Label.dir/label.cpp.o.d -o CMakeFiles/Label.dir/label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp: In member function 'virtual std::string Avogadro::QtPlugins::LayerLabel::serialize()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:98:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 98 | std::string aux = (const char*)atomOptions; | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:99:24: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 99 | std::string aux2 = (const char*)residueOptions; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp: In member function 'void Avogadro::QtPlugins::LayerLabel::setupWidget(Avogadro::QtPlugins::Label*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:182:11: warning: variable 'index' set but not used [-Wunused-but-set-variable] 182 | int index = atom->findData(int(atomOptions)); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o -MF CMakeFiles/Label.dir/LabelPlugin.cpp.o.d -o CMakeFiles/Label.dir/LabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Label.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/Label.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/Label.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Label.a CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o CMakeFiles/Label.dir/label.cpp.o CMakeFiles/Label.dir/LabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Label.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target Label make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Generating ui_lammpsinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget. make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/lammpsinput/lammpsinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -MF CMakeFiles/LabelEditor.dir/labeleditor.cpp.o.d -o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -MF CMakeFiles/LabelEditor.dir/qrc_label.cpp.o.d -o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/qrc_label.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qatomic.h:41, from /usr/include/qt5/QtCore/qvariant.h:43, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp: In member function 'QString Avogadro::QtPlugins::LammpsInputDialog::generateInputDeck()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:628:42: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 628 | mol << "velocity all create " << fixed << qSetRealNumberPrecision(2) | ^~~~~ In file included from /usr/include/qt5/QtCore/qdebug.h:49, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:21: /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:635:31: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 635 | mol << "timestep " << fixed << qSetRealNumberPrecision(1) << m_timeStep | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp: In member function 'QString Avogadro::QtPlugins::LammpsInputDialog::getEnsemble(ensemble)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:856:26: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 856 | << " temp " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:857:21: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 857 | << " " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:872:26: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 872 | << " temp " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:873:21: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 873 | << " " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LabelEditor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/LabelEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabelEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LabelEditor.a CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LabelEditor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target LabelEditor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Generating ui_lineformatinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h: In member function 'void Avogadro::QtPlugins::LammpsInput::menuActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LammpsInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -P CMakeFiles/LammpsInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LammpsInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LammpsInput.a CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LammpsInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target LammpsInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/manipulator/manipulator.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target Manipulator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/measuretool/measuretool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target MeasureTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Generating ui_molecularpropertiesdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h: In constructor 'Avogadro::QtPlugins::LineFormatInput::LineFormatInput(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:48:19: warning: 'Avogadro::QtPlugins::LineFormatInput::m_reader' will be initialized after [-Wreorder] 48 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:47:20: warning: 'Avogadro::QtGui::Molecule* Avogadro::QtPlugins::LineFormatInput::m_molecule' [-Wreorder] 47 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:27:1: warning: when initialized here [-Wreorder] 27 | LineFormatInput::LineFormatInput(QObject* parent_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp: In member function 'void Avogadro::QtPlugins::LineFormatInput::showDialog()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:128:8: warning: unused variable 'success' [-Wunused-variable] 128 | bool success = m_reader->readString(m_descriptor, newMol); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LineFormatInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -P CMakeFiles/LineFormatInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LineFormatInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LineFormatInput.a CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LineFormatInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Built target LineFormatInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Generating ui_submitcalculationdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_submitcalculationdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Generating ui_configdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_configdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Generating ui_mongochemwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_mongochemwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 64%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target MolecularProperties make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/navigator/navigator.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target Navigator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochem.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochem.cpp.o -MF CMakeFiles/MongoChem.dir/mongochem.cpp.o.d -o CMakeFiles/MongoChem.dir/mongochem.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochem.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o -MF CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o.d -o CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o -c 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-I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -MF CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases/networkdatabases.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NetworkDatabases.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -P CMakeFiles/NetworkDatabases.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_link_script CMakeFiles/NetworkDatabases.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NetworkDatabases.a CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NetworkDatabases.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target NetworkDatabases make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/girderrequest.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/girderrequest.cpp.o -MF CMakeFiles/MongoChem.dir/girderrequest.cpp.o.d -o CMakeFiles/MongoChem.dir/girderrequest.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/girderrequest.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Generating ui_obforcefielddialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/configdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/configdialog.cpp.o -MF CMakeFiles/MongoChem.dir/configdialog.cpp.o.d -o CMakeFiles/MongoChem.dir/configdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o -MF CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o.d -o CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/listmoleculesmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -MF CMakeFiles/OpenBabel.dir/obcharges.cpp.o.d -o CMakeFiles/OpenBabel.dir/obcharges.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.h: In constructor 'Avogadro::QtPlugins::OBCharges::OBCharges(const std::string&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.h:65:15: warning: 'Avogadro::QtPlugins::OBCharges::m_identifier' will be initialized after [-Wreorder] 65 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:77: warning: base 'Avogadro::Calc::ChargeModel' [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:1: warning: when initialized here [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o -MF CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o.d -o CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationsubmitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o -MF CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o.d -o CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationwatcher.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o -MF CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o.d -o CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -MF CMakeFiles/OpenBabel.dir/obfileformat.cpp.o.d -o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o -MF CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o.d -o CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MongoChem.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -P CMakeFiles/MongoChem.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_link_script CMakeFiles/MongoChem.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MongoChem.a CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o CMakeFiles/MongoChem.dir/mongochem.cpp.o CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o CMakeFiles/MongoChem.dir/girderrequest.cpp.o CMakeFiles/MongoChem.dir/configdialog.cpp.o CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MongoChem.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target MongoChem make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Generating ui_openmminputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/openmminput/openmminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -MF CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o -MF CMakeFiles/OpenBabel.dir/obprocess.cpp.o.d -o CMakeFiles/OpenBabel.dir/obprocess.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function 'void Avogadro::QtPlugins::OBProcess::queryReadFormatsPrepare()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:154:23: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 154 | result.insertMulti(description, extension); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:6: /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function 'void Avogadro::QtPlugins::OBProcess::queryWriteFormatsPrepare()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:179:23: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 179 | result.insertMulti(description, extension); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function 'void Avogadro::QtPlugins::OBProcess::queryForceFieldsPrepare()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:279:23: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 279 | result.insertMulti(key, desc); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function 'void Avogadro::QtPlugins::OBProcess::queryChargesPrepare()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:318:23: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 318 | result.insertMulti(key, desc); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qatomic.h:41, from /usr/include/qt5/QtCore/qvariant.h:43, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp: In member function 'QString Avogadro::QtPlugins::OpenMMInputDialog::generateInputDeck()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:959:44: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 959 | scriptStream << " nonbondedCutoff=" << fixed << qSetRealNumberPrecision(4) | ^~~~~ In file included from /usr/include/qt5/QtCore/qdebug.h:49, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:21: /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:970:49: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 970 | scriptStream << ", ewaldErrorTolerance=" << fixed | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminput.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h: In member function 'void Avogadro::QtPlugins::OpenMMInput::menuActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenMMInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -P CMakeFiles/OpenMMInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenMMInput.a CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenMMInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Built target OpenMMInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Generating qrc_playertool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/lib64/qt5/bin/rcc --name playertool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o -MF CMakeFiles/OpenBabel.dir/openbabel.cpp.o.d -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp: In member function 'virtual QList Avogadro::QtPlugins::OpenBabel::fileFormats() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:127:60: warning: 'QSet QList::toSet() const [with T = QString]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 127 | formatDescriptions.unite(m_readFormats.uniqueKeys().toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qobject.h:49, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:6: /usr/include/qt5/QtCore/qlist.h:413:13: note: declared here 413 | QSet toSet() const; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:128:61: warning: 'QSet QList::toSet() const [with T = QString]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 128 | formatDescriptions.unite(m_writeFormats.uniqueKeys().toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qdebug.h:52, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:20: /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:151:63: warning: 'QSet QList::toSet() const [with T = QString]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 151 | formatExtensions.unite(m_readFormats.values(qdesc).toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:155:64: warning: 'QSet QList::toSet() const [with T = QString]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 155 | formatExtensions.unite(m_writeFormats.values(qdesc).toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp: In member function 'QString Avogadro::QtPlugins::OpenBabel::autoDetectForceField() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:45: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:45: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:18: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenBabel.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -P CMakeFiles/OpenBabel.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenBabel.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenBabel.a CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o CMakeFiles/OpenBabel.dir/obcharges.cpp.o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o CMakeFiles/OpenBabel.dir/obprocess.cpp.o CMakeFiles/OpenBabel.dir/openbabel.cpp.o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenBabel.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target OpenBabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp: In member function 'void Avogadro::QtPlugins::PlayerTool::recordMovie()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:286:45: warning: 'static QPixmap QPixmap::grabWindow(WId, int, int, int, int)' is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 286 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qicon.h:46, from /usr/include/qt5/QtGui/QIcon:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:16: /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:330:45: warning: 'static QPixmap QPixmap::grabWindow(WId, int, int, int, int)' is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 330 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:367:45: warning: 'static QPixmap QPixmap::grabWindow(WId, int, int, int, int)' is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 367 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PlayerTool.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PlayerTool.a CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o CMakeFiles/PlayerTool.dir/playertool.cpp.o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PlayerTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PlayerTool make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -MF CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o -MF CMakeFiles/PropertyTables.dir/propertytables.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertytables.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertytables.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o -MF CMakeFiles/POVRay.dir/povray.cpp.o.d -o CMakeFiles/POVRay.dir/povray.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -MF CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o.d -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Linking CXX static library ../../../lib/avogadro2/staticplugins/POVRay.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -P CMakeFiles/POVRay.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_link_script CMakeFiles/POVRay.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/POVRay.a CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o CMakeFiles/POVRay.dir/povray.cpp.o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/POVRay.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Built target POVRay make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -MF CMakeFiles/PropertyTables.dir/propertymodel.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp: In member function 'virtual QVariant Avogadro::PropertyModel::data(const QModelIndex&, int) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:186:13: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 186 | row < m_molecule->atomCount()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:192:20: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 192 | row < m_molecule->residueCount()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:212:13: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 212 | if (row >= m_molecule->atomCount() || column > AtomColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:245:13: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 245 | if (row >= m_molecule->bondCount() || column > BondColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:270:13: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 270 | if (row >= m_molecule->residueCount() || column > ResidueColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:293:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 293 | if (row > m_angles.size() || column > AngleColumns) | ~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:323:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 323 | if (row > m_torsions.size() || column > TorsionColumns) | ~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:200:8: warning: unused variable 'sortRole' [-Wunused-variable] 200 | bool sortRole = | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp: In member function 'bool Avogadro::PropertyModel::fragmentRecurse(const Avogadro::QtGui::RWBond&, const Avogadro::QtGui::RWAtom&, const Avogadro::QtGui::RWAtom&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:625:47: warning: typedef 'BondIter' locally defined but not used [-Wunused-local-typedefs] 625 | typedef std::vector::const_iterator BondIter; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h: In constructor 'Avogadro::PropertyView::PropertyView(Avogadro::PropertyType, QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h:35:20: warning: 'Avogadro::PropertyView::m_molecule' will be initialized after [-Wreorder] 35 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h:34:16: warning: 'Avogadro::PropertyType Avogadro::PropertyView::m_type' [-Wreorder] 34 | PropertyType m_type; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:25:1: warning: when initialized here [-Wreorder] 25 | PropertyView::PropertyView(PropertyType type, QWidget* parent) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp: In member function 'virtual void Avogadro::PropertyView::selectionChanged(const QItemSelection&, const QItemSelection&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:100:18: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 100 | if (rowNum >= m_molecule->atomCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:105:18: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 105 | if (rowNum >= m_molecule->bondCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PropertyTables.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -P CMakeFiles/PropertyTables.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_link_script CMakeFiles/PropertyTables.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PropertyTables.a CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o CMakeFiles/PropertyTables.dir/propertytables.cpp.o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o CMakeFiles/PropertyTables.dir/propertyview.cpp.o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PropertyTables.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target PropertyTables make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o -MF CMakeFiles/Select.dir/select.cpp.o.d -o CMakeFiles/Select.dir/select.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h: In constructor 'Avogadro::QtPlugins::Select::Select(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h:63:29: warning: 'Avogadro::QtPlugins::Select::m_layerManager' will be initialized after [-Wreorder] 63 | QtGui::PluginLayerManager m_layerManager; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h:61:20: warning: 'Avogadro::QtGui::Molecule* Avogadro::QtPlugins::Select::m_molecule' [-Wreorder] 61 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:27:1: warning: when initialized here [-Wreorder] 27 | Select::Select(QObject* parent_) | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectWater()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:233:19: warning: loop variable 'residue' creates a copy from type 'const Avogadro::Core::Residue' [-Wrange-loop-construct] 233 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:233:19: note: use reference type to prevent copying 233 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectBackboneAtoms()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:249:19: warning: loop variable 'residue' creates a copy from type 'const Avogadro::Core::Residue' [-Wrange-loop-construct] 249 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:249:19: note: use reference type to prevent copying 249 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectSidechainAtoms()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:276:19: warning: loop variable 'residue' creates a copy from type 'const Avogadro::Core::Residue' [-Wrange-loop-construct] 276 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:276:19: note: use reference type to prevent copying 276 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectAtomIndex()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:402:35: warning: comparison of integer expressions of different signedness: 'Avogadro::Index' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 402 | for (Index i = start; i <= last; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectResidue()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:438:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 438 | if (index >= 1 && index < residueList.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:455:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 455 | if (index >= 1 && index < residueList.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o -MF CMakeFiles/Select.dir/SelectPlugin.cpp.o.d -o CMakeFiles/Select.dir/SelectPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/SelectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Select.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -P CMakeFiles/Select.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_link_script CMakeFiles/Select.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Select.a CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o CMakeFiles/Select.dir/select.cpp.o CMakeFiles/Select.dir/SelectPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Select.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Built target Select make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Selection_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -MF CMakeFiles/ResetView.dir/resetview.cpp.o.d -o CMakeFiles/ResetView.dir/resetview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -MF CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o.d -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup/spacegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -MF CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o.d -o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ResetView.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -P CMakeFiles/ResetView.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_link_script CMakeFiles/ResetView.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ResetView.a CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o CMakeFiles/ResetView.dir/resetview.cpp.o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ResetView.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target ResetView make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Surfaces cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/slatersetconcurrent.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfaces.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Surfaces_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SpaceGroup.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SpaceGroup.a CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SpaceGroup.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target SpaceGroup make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Generating ui_vibrationdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/ui_vibrationdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/spectra/spectra.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -MF CMakeFiles/Spectra.dir/vibrationdialog.cpp.o.d -o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qdialog.h:43, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF CMakeFiles/SVG.dir/svg.cpp.o.d -o CMakeFiles/SVG.dir/svg.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:6: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from 'std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::QtPlugins::SVG::getPositions()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&atom + 24].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp: In member function 'Avogadro::QtPlugins::SVG::getPositions()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: 'atom' declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -MF CMakeFiles/Spectra.dir/vibrationmodel.cpp.o.d -o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp: In member function 'virtual QVariant Avogadro::QtPlugins::VibrationModel::data(const QModelIndex&, int) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:76:49: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 76 | m_molecule->vibrationFrequencies().size() <= idx.row()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:83:55: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 83 | if (m_molecule->vibrationFrequencies().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:88:57: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 88 | if (m_molecule->vibrationIRIntensities().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:93:60: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 93 | if (m_molecule->vibrationRamanIntensities().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp: In member function 'virtual QModelIndex Avogadro::QtPlugins::VibrationModel::index(int, int, const QModelIndex&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:110:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 110 | row < m_molecule->vibrationFrequencies().size()) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o -MF CMakeFiles/SVG.dir/SVGPlugin.cpp.o.d -o CMakeFiles/SVG.dir/SVGPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SVG.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -P CMakeFiles/SVG.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_link_script CMakeFiles/SVG.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SVG.a CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o CMakeFiles/SVG.dir/svg.cpp.o CMakeFiles/SVG.dir/SVGPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SVG.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target SVG make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o -MF CMakeFiles/Spectra.dir/spectra.cpp.o.d -o CMakeFiles/Spectra.dir/spectra.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h: In member function 'void Avogadro::QtPlugins::Spectra::openDialog()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -MF CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o.d -o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Spectra.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -P CMakeFiles/Spectra.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/Spectra.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Spectra.a CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o CMakeFiles/Spectra.dir/spectra.cpp.o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Spectra.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target Spectra make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbs.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbs.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target apbs_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target Cp2kInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target Cp2kInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o -MF CMakeFiles/VRML.dir/vrml.cpp.o.d -o CMakeFiles/VRML.dir/vrml.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target GamessInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -MF CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -MF CMakeFiles/VRML.dir/VRMLPlugin.cpp.o.d -o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VRML.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -P CMakeFiles/VRML.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_link_script CMakeFiles/VRML.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VRML.a CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o CMakeFiles/VRML.dir/vrml.cpp.o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VRML.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target VRML make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp.d" AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target QuantumInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o -MF CMakeFiles/commands.dir/command.cpp.o.d -o CMakeFiles/commands.dir/command.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp In file included from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp: In member function 'void Avogadro::QtPlugins::Command::updateActions()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:286:67: warning: 'QList QMap::uniqueKeys() const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 286 | foreach (const QString& programName, m_commandScripts.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h:11: /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:287:50: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 287 | QStringList scripts = m_commandScripts.values(programName); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o -MF CMakeFiles/commands.dir/commandsPlugin.cpp.o.d -o CMakeFiles/commands.dir/commandsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Linking CXX static library ../../../lib/avogadro2/staticplugins/commands.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -P CMakeFiles/commands.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/commands.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/commands.a CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o CMakeFiles/commands.dir/command.cpp.o CMakeFiles/commands.dir/commandsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/commands.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target commands make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp: In member function 'void Avogadro::QtPlugins::FileFormatScript::readMetaData()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp:219:52: warning: typedef 'StringVectorIter' locally defined but not used [-Wunused-local-typedefs] 219 | typedef std::vector::const_iterator StringVectorIter; | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -P CMakeFiles/ScriptFileFormats.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptFileFormats.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target ScriptFileFormats make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Generating ui_downloaderwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/ui_downloaderwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h: In constructor 'Avogadro::QtPlugins::ScriptChargeModel::ScriptChargeModel(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:86:8: warning: 'Avogadro::QtPlugins::ScriptChargeModel::m_electrostatics' will be initialized after [-Wreorder] 86 | bool m_electrostatics; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:82:10: warning: 'Avogadro::QtPlugins::ScriptChargeModel::Format Avogadro::QtPlugins::ScriptChargeModel::m_inputFormat' [-Wreorder] 82 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:28:1: warning: when initialized here [-Wreorder] 28 | ScriptChargeModel::ScriptChargeModel(const QString& scriptFileName_) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function 'virtual Avogadro::MatrixX Avogadro::QtPlugins::ScriptChargeModel::partialCharges(Avogadro::Core::Molecule&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:95:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 95 | for (unsigned int i = 0; i < lines.size(); ++i) { | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function 'void Avogadro::QtPlugins::ScriptChargeModel::processElementString(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:62: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/QString:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:13: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:62: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:35: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptcharges.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -MF CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o.d -o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/plugindownloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptCharges.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -P CMakeFiles/ScriptCharges.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptCharges.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptCharges.a CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptCharges.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target ScriptCharges make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -MF CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o.d -o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -MF CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp: In member function 'QList Avogadro::QtPlugins::ZipExtracter::extract(std::string, std::string)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp:110:8: warning: unused variable 'itrCount' [-Wunused-variable] 110 | long itrCount = 0; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -MF CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BallStick.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -P CMakeFiles/BallStick.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_link_script CMakeFiles/BallStick.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BallStick.a CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o CMakeFiles/BallStick.dir/ballandstick.cpp.o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BallStick.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target BallStick make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PluginDownloader.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -P CMakeFiles/PluginDownloader.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_link_script CMakeFiles/PluginDownloader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PluginDownloader.a CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PluginDownloader.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target PluginDownloader make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o -MF CMakeFiles/Force.dir/force.cpp.o.d -o CMakeFiles/Force.dir/force.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o -MF CMakeFiles/Force.dir/ForcePlugin.cpp.o.d -o CMakeFiles/Force.dir/ForcePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/ForcePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Force.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -P CMakeFiles/Force.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_link_script CMakeFiles/Force.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Force.a CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o CMakeFiles/Force.dir/force.cpp.o CMakeFiles/Force.dir/ForcePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Force.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Force make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -MF CMakeFiles/CloseContacts.dir/closecontacts.cpp.o.d -o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CloseContacts.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -P CMakeFiles/CloseContacts.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_link_script CMakeFiles/CloseContacts.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CloseContacts.a CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CloseContacts.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target CloseContacts make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o -MF CMakeFiles/Licorice.dir/licorice.cpp.o.d -o CMakeFiles/Licorice.dir/licorice.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -MF CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Licorice make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF CMakeFiles/Meshes.dir/meshes.cpp.o.d -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:6: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:86:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.386191].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp: In member function 'Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:86:51: note: '' declared here 86 | Core::Array colorsRGB(colors.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Meshes.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target Meshes make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -MF CMakeFiles/NonCovalent.dir/noncovalent.cpp.o.d -o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NonCovalent.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -P CMakeFiles/NonCovalent.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_link_script CMakeFiles/NonCovalent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NonCovalent.a CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NonCovalent.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target NonCovalent make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -MF CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o.d -o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaals.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target VanDerWaals make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -P CMakeFiles/VanDerWaalsAO.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaalsAO.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target VanDerWaalsAO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp:2: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o -MF CMakeFiles/Wireframe.dir/wireframe.cpp.o.d -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -MF CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Wireframe.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -P CMakeFiles/Wireframe.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wireframe.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Wireframe.a CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o CMakeFiles/Wireframe.dir/wireframe.cpp.o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Wireframe.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target Wireframe make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -MF CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o.d -o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h: In constructor 'Avogadro::QtPlugins::OverlayAxes::OverlayAxes(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:62:12: warning: 'Avogadro::QtPlugins::OverlayAxes::m_axesAction' will be initialized after [-Wreorder] 62 | QAction* m_axesAction; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:54:8: warning: 'bool Avogadro::QtPlugins::OverlayAxes::m_initialized' [-Wreorder] 54 | bool m_initialized; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:234:1: warning: when initialized here [-Wreorder] 234 | OverlayAxes::OverlayAxes(QObject* parent_) | ^~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:10: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.461982].m_storage' is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function 'Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: note: '' declared here 145 | Array vertices(numVertices); | ^ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.461984].m_storage' is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function 'Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: note: '' declared here 146 | Array normals(numVertices); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OverlayAxes.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -P CMakeFiles/OverlayAxes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_link_script CMakeFiles/OverlayAxes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OverlayAxes.a CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OverlayAxes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target OverlayAxes make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Generating qrc_bondcentrictool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/lib64/qt5/bin/rcc --name bondcentrictool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp: In member function 'void Avogadro::QtPlugins::QTAIMExtension::triggered()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp:102:14: warning: 'void QTime::start()' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 102 | timer.start(); | ~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QTime:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp:27: /usr/include/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp: In member function 'bool Avogadro::QtPlugins::QTAIMWavefunction::initializeWithWFNFile(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:52: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qhashfunctions.h:44, from /usr/include/qt5/QtCore/qlist.h:47, from /usr/include/qt5/QtCore/qhash.h:46, from /usr/include/qt5/QtCore/qdebug.h:45, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:17: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:52: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:37: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:52: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:52: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:37: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:60: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:60: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:45: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:16: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'bool Avogadro::QtPlugins::BondCentricTool::buildFragmentRecurse(const Avogadro::QtGui::RWBond&, const Avogadro::QtGui::RWAtom&, const Avogadro::QtGui::RWAtom&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:1190:47: warning: typedef 'BondIter' locally defined but not used [-Wunused-local-typedefs] 1190 | typedef std::vector::const_iterator BondIter; | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:14: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::(anonymous namespace)::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:128:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.467520].m_storage' is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'Avogadro::QtPlugins::(anonymous namespace)::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:128:26: note: '' declared here 128 | Array verts(4); | ^ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::(anonymous namespace)::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float) [clone .constprop.0]' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:232:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.836346].m_storage' is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'Avogadro::QtPlugins::(anonymous namespace)::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float) [clone .constprop.0]': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:232:26: note: '' declared here 232 | Array verts(5); | ^ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::(anonymous namespace)::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float) [clone .constprop.0]' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:281:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.852095].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'Avogadro::QtPlugins::(anonymous namespace)::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float) [clone .constprop.0]': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:281:33: note: '' declared here 281 | Array verts(numVerts); | ^ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::(anonymous namespace)::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float) [clone .constprop.0]' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:189:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.853053].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'Avogadro::QtPlugins::(anonymous namespace)::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float) [clone .constprop.0]': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:189:33: note: '' declared here 189 | Array verts(numVerts); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BondCentric.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P CMakeFiles/BondCentric.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_link_script CMakeFiles/BondCentric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BondCentric.a CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BondCentric.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target BondCentric make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Generating qrc_manipulator.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function 'Avogadro::QtPlugins::QTAIMODEIntegrator::r8_f(double, double*, double*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:267:23: warning: 'MEM[(double &)&gradient + 16]' may be used uninitialized [-Wmaybe-uninitialized] 267 | yp[2] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: 'MEM[(double &)&gradient + 16]' was declared here 196 | Matrix gradient; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function 'Avogadro::QtPlugins::QTAIMODEIntegrator::integrate(QVector3D)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:151:40: warning: 'abserr' may be used uninitialized [-Wmaybe-uninitialized] 151 | flag = QTAIMODEIntegrator::r8_rkf45(NEQN, y, yp, &t, t_out, &relerr, abserr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | flag); | ~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:53:9: note: 'abserr' was declared here 53 | qreal abserr; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:56:10: warning: 'n_step' may be used uninitialized [-Wmaybe-uninitialized] 56 | qint64 n_step; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:145:69: warning: 't_stop' may be used uninitialized [-Wmaybe-uninitialized] 145 | ((qreal)(n_step - i_step + 1) * t_start + (qreal)(i_step - 1) * t_stop) / | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:61:9: note: 't_stop' was declared here 61 | qreal t_stop; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp: In member function 'void Avogadro::QtPlugins::Manipulator::updatePressedButtons(QMouseEvent*, bool)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:237:33: warning: 'Qt::MidButton' is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 237 | } else if (e->buttons() & Qt::MidButton || | ^~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:6: /usr/include/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -MF CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o.d -o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Manipulator.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -P CMakeFiles/Manipulator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Manipulator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Manipulator.a CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o CMakeFiles/Manipulator.dir/manipulator.cpp.o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Manipulator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Manipulator make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Generating qrc_measuretool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/lib64/qt5/bin/rcc --name measuretool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:11: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'QVector >::QVector(int, Eigen::Matrix const&)' at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from 'QVector >::QVector(int, Eigen::Matrix const&)' at /usr/include/qt5/QtCore/qvector.h:519:1, inlined from 'Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:157:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.469547].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp: In member function 'Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:157:54: note: '' declared here 157 | QVector positions(m_atoms.size(), Vector3()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MeasureTool.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -P CMakeFiles/MeasureTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_link_script CMakeFiles/MeasureTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MeasureTool.a CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o CMakeFiles/MeasureTool.dir/measuretool.cpp.o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MeasureTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Built target MeasureTool make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Generating qrc_navigator.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/lib64/qt5/bin/rcc --name navigator --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp: In member function 'Avogadro::QtPlugins::QTAIMLSODAIntegrator::f(int, double, double*, double*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:242:25: warning: 'MEM[(double &)&gradient + 16]' may be used uninitialized [-Wmaybe-uninitialized] 242 | ydot[3] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: note: 'MEM[(double &)&gradient + 16]' was declared here 171 | Matrix gradient; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o -MF CMakeFiles/Navigator.dir/navigator.cpp.o.d -o CMakeFiles/Navigator.dir/navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp: In member function 'virtual QUndoCommand* Avogadro::QtPlugins::Navigator::mousePressEvent(QMouseEvent*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:89:33: warning: 'Qt::MidButton' is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 89 | } else if (e->buttons() & Qt::MidButton || | ^~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:6: /usr/include/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -MF CMakeFiles/Navigator.dir/qrc_navigator.cpp.o.d -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -MF CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o.d -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Navigator.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -P CMakeFiles/Navigator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Navigator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Navigator.a CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o CMakeFiles/Navigator.dir/navigator.cpp.o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Navigator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target Navigator make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Generating ui_selectiontoolwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Generating qrc_selectiontool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function 'QList QTAIMEvaluateProperty(QList)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1249:42: warning: 'QSet QList::toSet() const [with T = long long int]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1249 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qdebug.h:52, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:53: /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function 'QList QTAIMEvaluatePropertyRTP(QList)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1509:42: warning: 'QSet QList::toSet() const [with T = long long int]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1509 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function 'QList QTAIMEvaluatePropertyTP(QList)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1853:42: warning: 'QSet QList::toSet() const [with T = long long int]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1853 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMExtension.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMExtension.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMExtension.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMExtension.a CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMExtension.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target QTAIMExtension make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qfuture.h:43, from /usr/include/qt5/QtCore/QFuture:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/surfaces/gaussiansetconcurrent.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h: In constructor 'Avogadro::QtPlugins::SelectionTool::SelectionTool(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:67:48: warning: 'Avogadro::QtPlugins::SelectionTool::m_doubleClick' will be initialized after [-Wreorder] 67 | bool m_drawSelectionBox, m_initSelectionBox, m_doubleClick; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:67:28: warning: 'bool Avogadro::QtPlugins::SelectionTool::m_initSelectionBox' [-Wreorder] 67 | bool m_drawSelectionBox, m_initSelectionBox, m_doubleClick; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:44:1: warning: when initialized here [-Wreorder] 44 | SelectionTool::SelectionTool(QObject* parent_) | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function 'void Avogadro::QtPlugins::SelectionTool::applyLayer(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:257:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 257 | if (layer >= m_layerManager.layerCount()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:13: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:201:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.477196].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function 'Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:201:26: note: '' declared here 201 | Array verts(4); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -MF CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -MF CMakeFiles/Surfaces.dir/surfacedialog.cpp.o.d -o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qalgorithms.h:43, from /usr/include/qt5/QtCore/qlist.h:43, from /usr/include/qt5/QtCore/qstringlist.h:41, from /usr/include/qt5/QtCore/QStringList:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -MF CMakeFiles/Selection.dir/SelectionPlugin.cpp.o.d -o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Selection.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Selection.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Built target Selection make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Generating ui_apbsoutputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Generating ui_apbsdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -MF CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o -MF CMakeFiles/apbs.dir/apbs.cpp.o.d -o CMakeFiles/apbs.dir/apbs.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbs.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:34: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h: In member function 'void Avogadro::QtPlugins::Surfaces::surfacesActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In lambda function: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'ElectrostaticPotential' not handled in switch [-Wswitch] 226 | switch (m_dialog->surfaceType()) { | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'ElectronDensity' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'MolecularOrbital' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'SpinDensity' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'FromFile' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'Unknown' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:255:17: warning: unused variable 'mdist' [-Wunused-variable] 255 | const float mdist = probeRadius; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function 'void Avogadro::QtPlugins::Surfaces::colorMeshByPotential()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:597:10: warning: unused variable 'maxPotential' [-Wunused-variable] 597 | double maxPotential = *std::max_element(potentials.begin(), potentials.end()); | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function 'void Avogadro::QtPlugins::Surfaces::movieFrame()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:710:41: warning: 'static QPixmap QPixmap::grabWindow(WId, int, int, int, int)' is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 710 | QPixmap pixmap = QPixmap::grabWindow(glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qbrush.h:52, from /usr/include/qt5/QtGui/qpalette.h:46, from /usr/include/qt5/QtWidgets/qwidget.h:48, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:10: /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:21: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::Surfaces::colorMeshByPotential()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:590:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.502902].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function 'Avogadro::QtPlugins::Surfaces::colorMeshByPotential()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:590:51: note: '' declared here 590 | Core::Array positions(positionsf.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -MF CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o.d -o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Surfaces.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -P CMakeFiles/Surfaces.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/Surfaces.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Surfaces.a CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o CMakeFiles/Surfaces.dir/surfaces.cpp.o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Surfaces.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target Surfaces make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Generating ui_cp2kinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/cp2kinput/cp2kinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o -MF CMakeFiles/apbs.dir/opendxreader.cpp.o.d -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/opendxreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o -MF CMakeFiles/apbs.dir/apbsPlugin.cpp.o.d -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/apbs.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -P CMakeFiles/apbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/apbs.a CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o CMakeFiles/apbs.dir/apbs.cpp.o CMakeFiles/apbs.dir/apbsdialog.cpp.o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o CMakeFiles/apbs.dir/opendxreader.cpp.o CMakeFiles/apbs.dir/apbsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/apbs.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target apbs make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qbuttongroup.h:43, from /usr/include/qt5/QtWidgets/QButtonGroup:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtGui/qsyntaxhighlighter.h:43, from /usr/include/qt5/QtGui/QSyntaxHighlighter:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/gamessinput/gamesshighlighter.h:20, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h: In member function 'void Avogadro::QtPlugins::Cp2kInput::menuActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cp2kInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -P CMakeFiles/Cp2kInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cp2kInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cp2kInput.a CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cp2kInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Built target Cp2kInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qbuttongroup.h:43, from /usr/include/qt5/QtWidgets/QButtonGroup:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -MF CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o.d -o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -MF CMakeFiles/QuantumInput.dir/quantuminput.cpp.o.d -o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp In file included from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp: In member function 'void Avogadro::QtPlugins::QuantumInput::updateActions()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:211:74: warning: 'QList QMap::uniqueKeys() const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 211 | foreach (const QString& programName, m_inputGeneratorScripts.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h:11: /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:212:57: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 212 | QStringList scripts = m_inputGeneratorScripts.values(programName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinput.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h: In member function 'void Avogadro::QtPlugins::GamessInput::menuActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QuantumInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -P CMakeFiles/QuantumInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QuantumInput.a CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QuantumInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target QuantumInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/GamessInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/GamessInput.a CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o CMakeFiles/GamessInput.dir/gamessinput.cpp.o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/GamessInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target GamessInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Automatic MOC for target AvogadroQtPlugins cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginfactory.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/avogadrostaticqtplugins.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/pluginmanager.h" /usr/lib64/qt5/bin/moc -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginmanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target AvogadroQtPlugins_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Building CXX object avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/g++ -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Building CXX object avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/g++ -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -MF CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o.d -o CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Linking CXX shared library ../../lib/libAvogadroQtPlugins.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtPlugins.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o ../../lib/libAvogadroQtPlugins.so.1.97.0 CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/avogadro2/staticplugins/ThreeDMol.a ../../lib/avogadro2/staticplugins/ApplyColors.a ../../lib/avogadro2/staticplugins/BondCentric.a ../../lib/avogadro2/staticplugins/Bonding.a ../../lib/avogadro2/staticplugins/Cartoons.a ../../lib/avogadro2/staticplugins/CoordinateEditor.a ../../lib/avogadro2/staticplugins/CopyPaste.a ../../lib/avogadro2/staticplugins/Crystal.a ../../lib/avogadro2/staticplugins/CrystalScene.a ../../lib/avogadro2/staticplugins/CustomElements.a ../../lib/avogadro2/staticplugins/Editor.a ../../lib/avogadro2/staticplugins/FetchPDB.a ../../lib/avogadro2/staticplugins/Focus.a ../../lib/avogadro2/staticplugins/Hydrogens.a ../../lib/avogadro2/staticplugins/ImportPQR.a ../../lib/avogadro2/staticplugins/NucleicInput.a ../../lib/avogadro2/staticplugins/InsertFragment.a ../../lib/avogadro2/staticplugins/Label.a ../../lib/avogadro2/staticplugins/LabelEditor.a ../../lib/avogadro2/staticplugins/LammpsInput.a ../../lib/avogadro2/staticplugins/LineFormatInput.a ../../lib/avogadro2/staticplugins/Manipulator.a ../../lib/avogadro2/staticplugins/MeasureTool.a ../../lib/avogadro2/staticplugins/MolecularProperties.a ../../lib/avogadro2/staticplugins/MongoChem.a ../../lib/avogadro2/staticplugins/Navigator.a ../../lib/avogadro2/staticplugins/NetworkDatabases.a ../../lib/avogadro2/staticplugins/OpenBabel.a ../../lib/avogadro2/staticplugins/OpenMMInput.a ../../lib/avogadro2/staticplugins/PlayerTool.a ../../lib/avogadro2/staticplugins/PropertyTables.a ../../lib/avogadro2/staticplugins/POVRay.a ../../lib/avogadro2/staticplugins/ResetView.a ../../lib/avogadro2/staticplugins/Select.a ../../lib/avogadro2/staticplugins/Selection.a ../../lib/avogadro2/staticplugins/SpaceGroup.a ../../lib/avogadro2/staticplugins/Surfaces.a ../../lib/avogadro2/staticplugins/SVG.a ../../lib/avogadro2/staticplugins/Spectra.a ../../lib/avogadro2/staticplugins/VRML.a ../../lib/avogadro2/staticplugins/apbs.a ../../lib/avogadro2/staticplugins/Cp2kInput.a ../../lib/avogadro2/staticplugins/GamessInput.a ../../lib/avogadro2/staticplugins/commands.a ../../lib/avogadro2/staticplugins/QuantumInput.a ../../lib/avogadro2/staticplugins/ScriptFileFormats.a ../../lib/avogadro2/staticplugins/ScriptCharges.a ../../lib/avogadro2/staticplugins/PluginDownloader.a ../../lib/avogadro2/staticplugins/BallStick.a ../../lib/avogadro2/staticplugins/CloseContacts.a ../../lib/avogadro2/staticplugins/Force.a ../../lib/avogadro2/staticplugins/Licorice.a ../../lib/avogadro2/staticplugins/Meshes.a ../../lib/avogadro2/staticplugins/NonCovalent.a ../../lib/avogadro2/staticplugins/VanDerWaals.a ../../lib/avogadro2/staticplugins/VanDerWaalsAO.a ../../lib/avogadro2/staticplugins/Wireframe.a ../../lib/avogadro2/staticplugins/OverlayAxes.a ../../lib/avogadro2/staticplugins/QTAIMExtension.a ../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a ../../lib/libAvogadroQtOpenGL.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../thirdparty/libgwavi/libgwavi.a /usr/lib64/libQt5Svg.so.5.15.10 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 ../../lib/libAvogadroMoleQueue.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Network.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroCalc.so.1.97.0 /usr/lib64/libQt5Network.so.5.15.10 /usr/lib64/libarchive.so /usr/lib64/libQt5Concurrent.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroQtGui.so.1.97.0 ../../lib/libAvogadroIO.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroCore.so.1.97.0 ../../lib/libAvogadroRendering.so.1.97.0 /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtPlugins.so.1.97.0 ../../lib/libAvogadroQtPlugins.so.1 ../../lib/libAvogadroQtPlugins.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:61:6: warning: type 'Avogadro::QtPlugins::BasisOption' violates the C++ One Definition Rule [-Wodr] 61 | enum BasisOption | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:59:6: note: an enum with different value name is defined in another translation unit 59 | enum BasisOption | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:63:3: note: name 'BasisSZVGTH' differs from name 'BasisSTO3G' defined in another translation unit 63 | BasisSZVGTH = 0, | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:61:3: note: mismatching definition 61 | BasisSTO3G = 0, | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:40:6: warning: type 'Avogadro::QtPlugins::CalculateOption' violates the C++ One Definition Rule [-Wodr] 40 | enum CalculateOption | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:37:6: note: an enum with different value name is defined in another translation unit 37 | enum CalculateOption | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:42:3: note: name 'CalculateEnergy' differs from name 'CalculateSinglePoint' defined in another translation unit 42 | CalculateEnergy = 0, | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:39:3: note: mismatching definition 39 | CalculateSinglePoint = 0, | ^ make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Built target AvogadroQtPlugins make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' + pushd build/docs ~/build/BUILD/avogadrolibs-1.97.0/build/docs ~/build/BUILD/avogadrolibs-1.97.0 + doxygen warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 102 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1549 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1862 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1952 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2057 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2266 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2308 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2315 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2561 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source 'images' is not a readable file or directory... skipping. Doxygen version used: 1.9.6 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback/64x64 Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback/32x32 Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/colormap Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/scripts Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/install Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/contrib Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/api Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/api/class Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_templates Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_images Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_images/400px Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:177: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:188: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:38: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:42: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:83: warning: unbalanced grouping commands tom.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper-inline.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper-inline.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:88: warning: unbalanced grouping commands vogadro/core/molecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/utilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/utilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:128: warning: unbalanced grouping commands vogadro/molequeue/molequeuewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculedeserializer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculedeserializer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculeserializer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculeserializer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/utils.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/utils.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrogl.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrogl.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrorendering.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrorendering.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h... Preprocessing /builddir/buil/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands d/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h... /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:21: warning: Compound Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h:19: warning: Compound Avogadro::Core::AtomUtilities is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:21: warning: Compound Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:86: warning: Compound Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:34: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:20: warning: Compound Avogadro::Core::hBondRecord is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:670: warning: Compound Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:677: warning: Compound Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:26: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h:18: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h:18: warning: Compound Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:65: warning: Compound Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:28: warning: Compound Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:39: warning: Compound Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:116: warning: Compound Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:105: warning: Compound Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:83: warning: Compound Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:61: warning: Compound Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:50: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:94: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:72: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h:42: warning: Compound Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:217: warning: no matching class member found for template < Molecule_T > BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const Possible candidates: 'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h 'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:16: warning: Member Matrix3 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:17: warning: Member Matrix4 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:18: warning: Member MatrixX (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:20: warning: Member Matrix2f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:21: warning: Member Matrix3f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:22: warning: Member Matrix4f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:23: warning: Member MatrixXf (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:16: warning: Member Vector3 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:17: warning: Member Vector4 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:19: warning: Member Vector2f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:20: warning: Member Vector3f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:21: warning: Member Vector4f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:22: warning: Member Vector2i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:23: warning: Member Vector3i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:24: warning: Member Vector4i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:25: warning: Member Vector2ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:26: warning: Member Vector3ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:27: warning: Member Vector4ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:15: warning: Member bondAngle(const Vector3 &b0, const Vector3 &b1) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:26: warning: Member dihedralAngle(const Vector3 &b0, const Vector3 &b1, const Vector3 &b2) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:39: warning: Member calcAngle(const Vector3 &v1, const Vector3 &v2, const Vector3 &v3) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:45: warning: Member calcDihedral(const Vector3 &v1, const Vector3 &v2, const Vector3 &v3, const Vector3 &v4) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h:39: warning: Member MaxIndex (variable) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:35: warning: Member name() (function) of class Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:46: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:123: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:112: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:90: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:68: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:57: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:101: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:79: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:107: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: argument 'format' of command @param is not found in the argument list of ChargeManager::registerModel(ChargeModel *model) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: The following parameter of Avogadro::Calc::ChargeManager::registerModel(ChargeModel *model) is not documented: parameter 'model' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:19: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:19: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h:64: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:192: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:69: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:112: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:153: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:31: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:35: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:37: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:41: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:43: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:742: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented. Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/docs/mainpage.dox... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/docs/mainpage.dox... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound vtkAvogadroActor... Generating concept documentation... Generating namespace index... Generating docs for namespace Avogadro Generating docs for compound Avogadro::Frustrum... Generating docs for compound Avogadro::TypeTraits... Generating docs for compound Avogadro::TypeTraits< char >... Generating docs for compound Avogadro::TypeTraits< double >... Generating docs for compound Avogadro::TypeTraits< float >... Generating docs for compound Avogadro::TypeTraits< int >... Generating docs for compound Avogadro::TypeTraits< short >... Generating docs for compound Avogadro::TypeTraits< unsigned char >... Generating docs for compound Avogadro::TypeTraits< unsigned int >... Generating docs for compound Avogadro::TypeTraits< unsigned short >... Generating docs for compound Avogadro::Calc::ChargeManager... Generating docs for compound Avogadro::Calc::ChargeModel... Generating docs for compound Avogadro::Calc::DefaultModel... Generating docs for namespace Avogadro::Core Generating docs for compound Avogadro::Core::AngleIterator... Generating docs for compound Avogadro::Core::Array... Generating docs for compound Avogadro::Core::ArraySet... Generating docs for nested compound Avogadro::Core::ArraySet::Holder... Generating docs for nested compound Avogadro::Core::ArraySet::PlaceHolder... Generating docs for compound Avogadro::Core::Atom... Generating docs for compound Avogadro::Core::AtomTemplate... Generating docs for compound Avogadro::Core::AtomTyper... Generating docs for compound Avogadro::Core::AtomUtilities... Generating docs for compound Avogadro::Core::AvoSpglib... Generating doc/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:749: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:82: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:38: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:48: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:63: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:73: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:95: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:107: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:119: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:222: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:223: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:225: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:226: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:234: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:236: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:237: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:237: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:238: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:239: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:240: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:189: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:31: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:35: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:37: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:41: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:43: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:220: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:221: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:222: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:223: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:224: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:225: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:226: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:227: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:228: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:229: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:230: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:231: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:232: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:233: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:239: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:247: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:255: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:263: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:271: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:279: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:287: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:295: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:303: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:304: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h:33: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:29: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:30: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:31: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:32: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:33: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:32: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:47: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:48: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:49: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:193: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:194: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:254: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:255: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:256: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:289: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:387: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:388: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:390: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:392: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:400: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:401: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:403: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:405: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:412: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:467: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:488: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:489: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:490: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:491: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:492: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:493: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:494: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:495: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:518: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:519: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:520: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:521: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:527: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:558: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:559: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:560: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:562: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:563: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:675: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:676: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:680: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:682: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:686: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:688: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:690: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:692: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:693: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:678: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:696: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:698: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:701: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:702: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:703: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:705: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:706: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:707: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:708: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:709: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:711: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:712: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:713: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:714: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:717: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:719: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:720: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:722: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:723: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:724: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:68: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:74: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:60: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:61: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:62: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:63: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:64: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:65: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:66: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:58: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:59: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:60: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:61: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:62: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:37: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:52: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:53: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:54: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:56: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:58: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:62: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:64: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:66: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:68: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:70: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:72: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:74: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:79: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:117: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:135: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:136: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:137: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:138: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:139: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:140: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:141: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:142: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:38: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:41: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h:31: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:25: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:26: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:30: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:87: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h:29: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h:125: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:62: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:73: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:84: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:95: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:106: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:117: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:128: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:139: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:150: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:156: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:167: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:184: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. s for compound Avogadro::Core::BasisSet... Generating docs for compound Avogadro::Core::Bond... Generating docs for compound Avogadro::Core::BondTemplate... Generating docs for compound Avogadro::Core::Color3f... Generating docs for compound Avogadro::Core::CoordinateBlockGenerator... Generating docs for compound Avogadro::Core::CoordinateSet... Generating docs for compound Avogadro::Core::CrystalTools... Generating docs for compound Avogadro::Core::Cube... Generating docs for compound Avogadro::Core::DihedralIterator... Generating docs for compound Avogadro::Core::Elements... Generating docs for compound Avogadro::Core::GaussianSet... Generating docs for compound Avogadro::Core::GaussianSetTools... Generating docs for compound Avogadro::Core::Graph... Generating docs for compound Avogadro::Core::hBondRecord... Generating docs for compound Avogadro::Core::Layer... Generating docs for compound Avogadro::Core::LayerData... Generating docs for compound Avogadro::Core::LayerManager... Generating docs for compound Avogadro::Core::Mesh... Generating docs for compound Avogadro::Core::Molecule... Generating docs for compound Avogadro::Core::MoleculeDeserializer... Generating docs for compound Avogadro::Core::MoleculeInfo... Generating docs for compound Avogadro::Core::MoleculeSerializer... Generating docs for compound Avogadro::Core::Mutex... Generating docs for compound Avogadro::Core::NameAtomTyper... Generating docs for compound Avogadro::Core::NeighborPerceiver... Generating docs for compound Avogadro::Core::Residue... Generating docs for compound Avogadro::Core::ResidueData... Generating docs for compound Avogadro::Core::RingPerceiver... Generating docs for compound Avogadro::Core::SecondaryStructureAssigner... Generating docs for compound Avogadro::Core::SharedMutex... Generating docs for compound Avogadro::Core::SlaterSet... Generating docs for compound Avogadro::Core::SlaterSetTools... Generating docs for compound Avogadro::Core::SpaceGroups... Generating docs for compound Avogadro::Core::SymbolAtomTyper... Generating docs for compound Avogadro::Core::UnitCell... Generating docs for compound Avogadro::Core::Variant... Generating docs for compound Avogadro::Core::VariantMap... Generating docs for compound Avogadro::Core::internal::ArrayRefContainer... Generating docs for compound Avogadro::Io::CaseInsensitiveComparator... Generating docs for nested compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare... Generating docs for compound Avogadro::Io::CjsonFormat... Generating docs for compound Avogadro::Io::CmlFormat... Generating docs for compound Avogadro::Io::DcdFormat... Generating docs for compound Avogadro::Io::FileFormat... Generating docs for compound Avogadro::Io::FileFormatManager... Generating docs for compound Avogadro::Io::GromacsFormat... Generating docs for compound Avogadro::Io::Hdf5DataFormat... Generating docs for compound Avogadro::Io::LammpsDataFormat... Generating docs for compound Avogadro::Io::LammpsTrajectoryFormat... Generating docs for compound Avogadro::Io::MdlFormat... Generating docs for compound Avogadro::Io::MMTFFormat... Generating docs for compound Avogadro::Io::OutcarFormat... Generating docs for compound Avogadro::Io::PdbFormat... Generating docs for compound Avogadro::Io::PoscarFormat... Generating docs for compound Avogadro::Io::TrrFormat... Generating docs for compound Avogadro::Io::TurbomoleFormat... Generating docs for compound Avogadro::Io::XyzFormat... Generating docs for compound Avogadro::MoleQueue::BatchJob... Generating docs for compound Avogadro::MoleQueue::Client... Generating docs for compound Avogadro::MoleQueue::InputGenerator... Generating docs for compound Avogadro::MoleQueue::InputGeneratorDialog... Generating docs for compound Avogadro::MoleQueue::InputGeneratorWidget... Generating docs for compound Avogadro::MoleQueue::JobObject... Generating docs for compound Avogadro::MoleQueue::JsonRpcClient... Generating docs for compound Avogadro::MoleQueue::MoleQueueDialog... Generating docs for compound Avogadro::MoleQueue::MoleQueueManager... Generating docs for comp/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:457: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:452: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:40: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:41: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:42: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=0) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:33: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:34: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:36: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:37: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:48: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:45: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:611: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:456: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:451: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:30: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:67: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:39: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:41: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:42: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:43: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:45: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:47: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:49: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:51: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:54: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:55: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:56: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:57: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:58: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:60: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:62: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:63: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:64: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:96: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:133: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:155: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:228: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:230: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:231: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:233: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:235: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:236: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:193: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:194: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:254: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:255: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:256: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:289: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:387: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:388: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:390: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:392: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:400: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:401: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:403: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:405: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:412: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:467: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:488: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:489: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:490: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:491: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:492: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:493: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:494: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:495: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:518: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:519: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:520: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:521: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:527: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:558: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:559: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:560: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:562: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:563: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:675: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:676: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:680: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:682: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:686: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:688: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:690: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:692: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:693: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:678: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:696: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:698: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:701: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:702: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:703: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:705: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:706: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:707: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:708: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:709: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:711: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:712: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:713: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:714: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:717: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:719: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:720: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:722: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:723: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:724: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:52: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:54: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:55: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:49: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=0) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:36: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:43: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:45: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:46: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:124: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:125: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:126: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:127: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:128: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:674: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:681: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:206: warning: Member label(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:207: warning: Member setLabel(Index atomId, const std::string &label, const QString &undoText=QStringLiteral("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:240: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:241: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:297: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:298: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:655: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:656: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:663: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:665: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:627: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:29: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:34: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:35: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:39: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:90: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:80: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:87: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:93: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:111: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:140: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:141: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented. ound Avogadro::MoleQueue::MoleQueueQueueListModel... Generating docs for compound Avogadro::MoleQueue::MoleQueueWidget... Generating docs for compound Avogadro::QtGui::BackgroundFileFormat... Generating docs for compound Avogadro::QtGui::ColorButton... Generating docs for compound Avogadro::QtGui::ContainerWidget... Generating docs for compound Avogadro::QtGui::CustomElementDialog... Generating docs for compound Avogadro::QtGui::ElementDetail... Generating docs for compound Avogadro::QtGui::ElementItem... Generating docs for compound Avogadro::QtGui::ElementTranslator... Generating docs for compound Avogadro::QtGui::ExtensionPlugin... Generating docs for compound Avogadro::QtGui::ExtensionPluginFactory... Generating docs for compound Avogadro::QtGui::FileBrowseWidget... Generating docs for compound Avogadro::QtGui::FileFormatDialog... Generating docs for compound Avogadro::QtGui::GenericHighlighter... Generating docs for nested compound Avogadro::QtGui::GenericHighlighter::Rule... Generating docs for compound Avogadro::QtGui::HydrogenTools... Generating docs for compound Avogadro::QtGui::InterfaceScript... Generating docs for compound Avogadro::QtGui::InterfaceWidget... Generating docs for compound Avogadro::QtGui::JsonWidget... Generating docs for compound Avogadro::QtGui::LayerModel... Generating docs for compound Avogadro::QtGui::MeshGenerator... Generating docs for compound Avogadro::QtGui::Molecule... Generating docs for compound Avogadro::QtGui::MoleculeModel... Generating docs for compound Avogadro::QtGui::MoleculeSystem... Generating docs for compound Avogadro::QtGui::MultiViewWidget... Generating docs for compound Avogadro::QtGui::PeriodicTableScene... Generating docs for compound Avogadro::QtGui::PeriodicTableView... Generating docs for compound Avogadro::QtGui::PersistentAtom... Generating docs for compound Avogadro::QtGui::PersistentBond... Generating docs for compound Avogadro::QtGui::PluginLayerManager... Generating docs for compound Avogadro::QtGui::PythonScript... Generating docs for compound Avogadro::QtGui::RWAtom... Generating docs for compound Avogadro::QtGui::RWBond... Generating docs for compound Avogadro::QtGui::RWLayerManager... Generating docs for compound Avogadro::QtGui::RWMolecule... Generating docs for nested compound Avogadro::QtGui::RWMolecule::UndoCommand... Generating docs for compound Avogadro::QtGui::ScenePlugin... Generating docs for compound Avogadro::QtGui::ScenePluginFactory... Generating docs for compound Avogadro::QtGui::ScenePluginModel... Generating docs for compound Avogadro::QtGui::ScriptLoader... Generating docs for compound Avogadro::QtGui::ToolPlugin... Generating docs for compound Avogadro::QtGui::ToolPluginFactory... Generating docs for compound Avogadro::QtGui::ViewFactory... Generating docs for compound Avogadro::QtOpenGL::ActiveObjects... Generating docs for compound Avogadro::QtOpenGL::GLWidget... Generating docs for compound Avogadro::QtOpenGL::QtTextRenderStrategy... Generating docs for compound Avogadro::QuantumIO::GamessukOut... Generating docs for compound Avogadro::QuantumIO::GAMESSUSOutput... Generating docs for compound Avogadro::QuantumIO::GaussianCube... Generating docs for compound Avogadro::QuantumIO::GaussianFchk... Generating docs for compound Avogadro::QuantumIO::GUKBasisSet... Generating docs for compound Avogadro::QuantumIO::MoldenFile... Generating docs for compound Avogadro::QuantumIO::MopacAux... Generating docs for compound Avogadro::QuantumIO::NWChemJson... Generating docs for compound Avogadro::QuantumIO::NWChemLog... Generating docs for compound Avogadro::Rendering::AmbientOcclusionSphereGeometry... Generating docs for compound Avogadro::Rendering::ArrowGeometry... Generating docs for compound Avogadro::Rendering::BezierGeometry... Generating docs for compound Avogadro::Rendering::BSplineGeometry... Generating docs for compound Avogadro::Rendering::BufferObject... Generating docs for compound Avogadro::Rendering::Camera... Generating docs for compound Avogadro::Rendering::Cartoon... Generating docs for compound Avogadro::Rendering::ColorNormalV/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h:52: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h:23: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:80: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:84: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:88: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:60: warning: Member order (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:62: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:34: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:35: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented. ertex... Generating docs for compound Avogadro::Rendering::ColorTextureVertex... Generating docs for compound Avogadro::Rendering::CurveGeometry... Generating docs for compound Avogadro::Rendering::Cylinder... Generating docs for compound Avogadro::Rendering::CylinderColor... Generating docs for compound Avogadro::Rendering::CylinderGeometry... Generating docs for compound Avogadro::Rendering::DashedLineGeometry... Generating docs for nested compound Avogadro::Rendering::DashedLineGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Drawable... Generating docs for compound Avogadro::Rendering::EigenData... Generating docs for compound Avogadro::Rendering::GeometryNode... Generating docs for compound Avogadro::Rendering::GeometryVisitor... Generating docs for compound Avogadro::Rendering::GLRenderer... Generating docs for compound Avogadro::Rendering::GLRenderVisitor... Generating docs for compound Avogadro::Rendering::GroupNode... Generating docs for nested compound Avogadro::Rendering::GroupNode::NodeInfo... Generating docs for compound Avogadro::Rendering::Identifier... Generating docs for compound Avogadro::Rendering::Line... Generating docs for compound Avogadro::Rendering::LineStripGeometry... Generating docs for nested compound Avogadro::Rendering::LineStripGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::MeshGeometry... Generating docs for nested compound Avogadro::Rendering::MeshGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Node... Generating docs for compound Avogadro::Rendering::Point... Generating docs for compound Avogadro::Rendering::POVRayVisitor... Generating docs for compound Avogadro::Rendering::Primitive... Generating docs for nested compound Avogadro::Rendering::Primitive::Identifier... Generating docs for compound Avogadro::Rendering::Scene... Generating docs for compound Avogadro::Rendering::Shader... Generating docs for compound Avogadro::Rendering::ShaderInfo... Generating docs for compound Avogadro::Rendering::ShaderProgram... Generating docs for compound Avogadro::Rendering::Sphere... Generating docs for compound Avogadro::Rendering::SphereColor... Generating docs for compound Avogadro::Rendering::SphereGeometry... Generating docs for compound Avogadro::Rendering::TextLabel2D... Generating docs for compound Avogadro::Rendering::TextLabel3D... Generating docs for compound Avogadro::Rendering::TextLabelBase... Generating docs for compound Avogadro::Rendering::TextProperties... Generating docs for compound Avogadro::Rendering::TextRenderStrategy... Generating docs for compound Avogadro::Rendering::Texture2D... Generating docs for compound Avogadro::Rendering::TransformNode... Generating docs for compound Avogadro::Rendering::Visitor... Generating docs for compound Avogadro::Rendering::VolumeGeometry... Generating docs for compound Avogadro::Rendering::VRMLVisitor... Generating docs for compound Avogadro::VTK::vtkGLWidget... Generating docs for compound Avogadro::VTK::VtkPlot... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class Avogadro::QtOpenGL::ActiveObjects Generating XML output for class Avogadro::Rendering::AmbientOcclusionSphereGeometry Generating XML output for class Avogadro::Core::AngleIterator Generating XML output for class Avogadro::Core::Array Generating XML output for class Avogadro::Core::internal::ArrayRefContainer Generating XML output for class Avogadro::Core::ArraySet Generating XML output for class Avogadro::Rendering::ArrowGeometry Generating XML output for class Avogadro::Core::Atom Generating XML output for class Avogadro::Core::AtomTemplate Generating XML output for class Avogadro::Core::AtomTyper Generating XML output for class Avogadro::Core::AtomUtilities Generating XML output for class Avogadro::Core::AvoSpglib Generating XML output for class Avogadro::QtGui::BackgroundFileFormat Generating XML output for class Avogadro::Core::BasisSet Generating XML output for class Avogadro::MoleQueue::BatchJob Generating XML output for class Avogadro::Rendering::BezierGeometry Generating XML output for class Avogadro::Core::Bond Generating XML output for class Avogadro::Core::BondTemplate Generating XML output for class Avogadro::Rendering::BSplineGeometry Generating XML output for class Avogadro::Rendering::BufferObject Generating XML output for class Avogadro::Rendering::Camera Generating XML output for class Avogadro::Rendering::Cartoon Generating XML output for class Avogadro::Io::CaseInsensitiveComparator Generating XML output for class Avogadro::Calc::ChargeManager Generating XML output for class Avogadro::Calc::ChargeModel Generating XML output for class Avogadro::Io::CjsonFormat Generating XML output for class Avogadro::MoleQueue::Client Generating XML output for class Avogadro::Io::CmlFormat Generating XML output for class Avogadro::Core::Color3f Generating XML output for class Avogadro::QtGui::ColorButton Generating XML output for class Avogadro::Rendering::ColorNormalVertex Generating XML output for class Avogadro::Rendering::ColorTextureVertex Generating XML output for class Avogadro::QtGui::ContainerWidget Generating XML output for class Avogadro::Core::CoordinateBlockGenerator Generating XML output for class Avogadro::Core::CoordinateSet Generating XML output for class Avogadro::Core::CrystalTools Generating XML output for class Avogadro::Core::Cube Generating XML output for class Avogadro::Rendering::CurveGeometry Generating XML output for class Avogadro::QtGui::CustomElementDialog Generating XML output for class Avogadro::Rendering::Cylinder Generating XML output for class Avogadro::Rendering::CylinderColor Generating XML output for class Avogadro::Rendering::CylinderGeometry Generating XML output for class Avogadro::Rendering::DashedLineGeometry Generating XML output for class Avogadro::Io::DcdFormat Generating XML output for class Avogadro::Calc::DefaultModel Generating XML output for class Avogadro::Core::DihedralIterator Generating XML output for class Avogadro::Rendering::Drawable Generating XML output for class Avogadro::Rendering::EigenData Generating XML output for class Avogadro::QtGui::ElementDetail Generating XML output for class Avogadro::QtGui::ElementItem Generating XML output for class Avogadro::Core::Elements Generating XML output for class Avogadro::QtGui::ElementTranslator Generating XML output for class Avogadro::QtGui::ExtensionPlugin Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory Generating XML output for class Avogadro::QtGui::FileBrowseWidget Generating XML output for class Avogadro::Io::FileFormat Generating XML output for class Avogadro::QtGui::FileFormatDialog Generating XML output for class Avogadro::Io::FileFormatManager Generating XML output for class Avogadro::Frustrum Generating XML output for class Avogadro::QuantumIO::GamessukOut Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput Generating XML output for class Avogadro::QuantumIO::GaussianCube Generating XML output for class Avogadro::QuantumIO::GaussianFchk Generating XML output for class Avogadro::Core::GaussianSet Generating XML output for class Avogadro::Core::GaussianSetTools Generating XML output for class Avogadro::QtGui::GenericHighlighter Generating XML output for class Avogadro::Rendering::GeometryNode Generating XML output for class Avogadro::Rendering::GeometryVisitor Generating XML output for class Avogadro::Rendering::GLRenderer Generating XML output for class Avogadro::Rendering::GLRenderVisitor Generating XML output for class Avogadro::QtOpenGL::GLWidget Generating XML output for class Avogadro::Core::Graph Generating XML output for class Avogadro::Io::GromacsFormat Generating XML output for class Avogadro::Rendering::GroupNode Generating XML output for class Avogadro::QuantumIO::GUKBasisSet Generating XML output for class Avogadro::Core::hBondRecord Generating XML output for class Avogadro::Io::Hdf5DataFormat Generating XML output for class Avogadro::Core::ArraySet::Holder Generating XML output for class Avogadro::QtGui::HydrogenTools Generating XML output for class Avogadro::Rendering::Identifier Generating XML output for class Avogadro::Rendering::Primitive::Identifier Generating XML output for class Avogadro::MoleQueue::InputGenerator Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget Generating XML output for class Avogadro::QtGui::InterfaceScript Generating XML output for class Avogadro::QtGui::InterfaceWidget Generating XML output for class Avogadro::MoleQueue::JobObject Generating XML output for class Avogadro::MoleQueue::JsonRpcClient Generating XML output for class Avogadro::QtGui::JsonWidget Generating XML output for class Avogadro::Io::LammpsDataFormat Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat Generating XML output for class Avogadro::Core::Layer Generating XML output for class Avogadro::Core::LayerData Generating XML output for class Avogadro::Core::LayerManager Generating XML output for class Avogadro::QtGui::LayerModel Generating XML output for class Avogadro::Rendering::Line Generating XML output for class Avogadro::Rendering::LineStripGeometry Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare Generating XML output for class Avogadro::Io::MdlFormat Generating XML output for class Avogadro::Core::Mesh Generating XML output for class Avogadro::QtGui::MeshGenerator Generating XML output for class Avogadro::Rendering::MeshGeometry Generating XML output for class Avogadro::Io::MMTFFormat Generating XML output for class Avogadro::QuantumIO::MoldenFile Generating XML output for class Avogadro::Core::Molecule Generating XML output for class Avogadro::QtGui::Molecule Generating XML output for class Avogadro::Core::MoleculeDeserializer Generating XML output for class Avogadro::Core::MoleculeInfo Generating XML output for class Avogadro::QtGui::MoleculeModel Generating XML output for class Avogadro::Core::MoleculeSerializer Generating XML output for class Avogadro::QtGui::MoleculeSystem Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog Generating XML output for class Avogadro::MoleQueue::MoleQueueManager Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget Generating XML output for class Avogadro::QuantumIO::MopacAux Generating XML output for class Avogadro::QtGui::MultiViewWidget Generating XML output for class Avogadro::Core::Mutex Generating XML output for class Avogadro::Core::NameAtomTyper Generating XML output for class Avogadro::Core::NeighborPerceiver Generating XML output for class Avogadro::Rendering::Node Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo Generating XML output for class Avogadro::QuantumIO::NWChemJson Generating XML output for class Avogadro::QuantumIO::NWChemLog Generating XML output for class Avogadro::Io::OutcarFormat Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex Generating XML output for class Avogadro::Io::PdbFormat Generating XML output for class Avogadro::QtGui::PeriodicTableScene Generating XML output for class Avogadro::QtGui::PeriodicTableView Generating XML output for class Avogadro::QtGui::PersistentAtom Generating XML output for class Avogadro::QtGui::PersistentBond Generating XML output for class Avogadro::Core::ArraySet::PlaceHolder Generating XML output for class Avogadro::QtGui::PluginLayerManager Generating XML output for class Avogadro::Rendering::Point Generating XML output for class Avogadro::Io::PoscarFormat Generating XML output for class Avogadro::Rendering::POVRayVisitor Generating XML output for class Avogadro::Rendering::Primitive Generating XML output for class Avogadro::QtGui::PythonScript Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy Generating XML output for class Avogadro::MoleQueue::BatchJob::Request Generating XML output for class Avogadro::Core::Residue Generating XML output for class Avogadro::Core::ResidueData Generating XML output for class Avogadro::Core::RingPerceiver Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule Generating XML output for class Avogadro::QtGui::RWAtom Generating XML output for class Avogadro::QtGui::RWBond Generating XML output for class Avogadro::QtGui::RWLayerManager Generating XML output for class Avogadro::QtGui::RWMolecule Generating XML output for class Avogadro::Rendering::Scene Generating XML output for class Avogadro::QtGui::ScenePlugin Generating XML output for class Avogadro::QtGui::ScenePluginFactory Generating XML output for class Avogadro::QtGui::ScenePluginModel Generating XML output for class Avogadro::QtGui::ScriptLoader Generating XML output for class Avogadro::Core::SecondaryStructureAssigner Generating XML output for class Avogadro::Rendering::Shader Generating XML output for class Avogadro::Rendering::ShaderInfo Generating XML output for class Avogadro::Rendering::ShaderProgram Generating XML output for class Avogadro::Core::SharedMutex Generating XML output for class Avogadro::Core::SlaterSet Generating XML output for class Avogadro::Core::SlaterSetTools Generating XML output for class Avogadro::Core::SpaceGroups Generating XML output for class Avogadro::Rendering::Sphere Generating XML output for class Avogadro::Rendering::SphereColor Generating XML output for class Avogadro::Rendering::SphereGeometry Generating XML output for class Avogadro::Core::SymbolAtomTyper Generating XML output for class Avogadro::Rendering::TextLabel2D Generating XML output for class Avogadro::Rendering::TextLabel3D Generating XML output for class Avogadro::Rendering::TextLabelBase Generating XML output for class Avogadro::Rendering::TextProperties Generating XML output for class Avogadro::Rendering::TextRenderStrategy Generating XML output for class Avogadro::Rendering::Texture2D Generating XML output for class Avogadro::QtGui::ToolPlugin Generating XML output for class Avogadro::QtGui::ToolPluginFactory Generating XML output for class Avogadro::Rendering::TransformNode Generating XML output for class Avogadro::Io::TrrFormat Generating XML output for class Avogadro::Io::TurbomoleFormat Generating XML output for class Avogadro::TypeTraits Generating XML output for class Avogadro::TypeTraits< char > Generating XML output for class Avogadro::TypeTraits< double > Generating XML output for class Avogadro::TypeTraits< float > Generating XML output for class Avogadro::TypeTraits< int > Generating XML output for class Avogadro::TypeTraits< short > Generating XML output for class Avogadro::TypeTraits< unsigned char > Generating XML output for class Avogadro::TypeTraits< unsigned int > Generating XML output for class Avogadro::TypeTraits< unsigned short > Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand Generating XML output for class Avogadro::Core::UnitCell Generating XML output for class Avogadro::Core::Variant Generating XML output for class Avogadro::Core::VariantMap Generating XML output for class Avogadro::QtGui::ViewFactory Generating XML output for class Avogadro::Rendering::Visitor Generating XML output for class Avogadro::Rendering::VolumeGeometry Generating XML output for class Avogadro::Rendering::VRMLVisitor Generating XML output for class vtkAvogadroActor Generating XML output for class Avogadro::VTK::vtkGLWidget Generating XML output for class Avogadro::VTK::VtkPlot Generating XML output for class Avogadro::Io::XyzFormat Generating XML output for namespace Avogadro Generating XML output for namespace Avogadro::Calc Gene/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h:47: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:38: warning: Member Axis (enumeration) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:45: warning: Member LineStyle (enumeration) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:57: warning: Member setData(const std::vector< std::vector< double > > &data) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:58: warning: Member setWindowName(const char *windowName) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:59: warning: Member setXTitle(const char *xTitle) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:60: warning: Member setYTitle(const char *yTitle) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:64: warning: Member setLineLabels(const std::vector< std::string > &labels) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:68: warning: Member setLineColors(const std::vector< std::array< double, 4 > > &colors) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:72: warning: Member setLineStyles(const std::vector< LineStyle > &styles) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:77: warning: Member show() (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:80: warning: Member setCustomTickLabels(Axis axis, const std::vector< double > &customTickPositions, const std::vector< std::string > &customTickLabels) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:85: warning: Member setAxisLimits(Axis axis, double min, double max) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: argument 'format' of command @param is not found in the argument list of ChargeManager::registerModel(ChargeModel *model) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: The following parameter of Avogadro::Calc::ChargeManager::registerModel(ChargeModel *model) is not documented: parameter 'model' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:48: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:63: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:73: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:95: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:107: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:189: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented: parameter 'formatPrefix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented: parameter 'fvec' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:452: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:451: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:627: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h:142: warning: The following parameter of Avogadro::ProtoCall::MatrixSerialization::deserialize(Avogadro::MatrixX &matrix, const void *data, size_t size) is not documented: parameter 'size' rating XML output for namespace Avogadro::Core Generating XML output for namespace Avogadro::Core::internal Generating XML output for namespace Avogadro::Io Generating XML output for namespace Avogadro::MoleQueue Generating XML output for namespace Avogadro::MoleQueue::Ui Generating XML output for namespace Avogadro::ProtoCall Generating XML output for namespace Avogadro::ProtoCall::MatrixSerialization Generating XML output for namespace Avogadro::ProtoCall::Utils Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui::@110 Generating XML output for namespace Avogadro::QtGui::Ui Generating XML output for namespace Avogadro::QtGui::Utilities Generating XML output for namespace Avogadro::QtOpenGL Generating XML output for namespace Avogadro::QtPlugins Generating XML output for namespace Avogadro::QuantumIO Generating XML output for namespace Avogadro::Rendering Generating XML output for namespace Avogadro::VTK Generating XML output for namespace google Generating XML output for namespace google::protobuf Generating XML output for namespace google::protobuf::io Generating XML output for namespace ProtoCall Generating XML output for namespace ProtoCall::Serialization Generating XML output for namespace QtPlugins Generating XML output for namespace std Generating XML output for file chargemanager.h Generating XML output for file chargemodel.h Generating XML output for file defaultmodel.h Generating XML output for file angleiterator.h Generating XML output for file angletools.h Generating XML output for file array.h Generating XML output for file atom.h Generating XML output for file atomtyper-inline.h Generating XML output for file atomtyper.h Generating XML output for file atomutilities.h Generating XML output for file avogadrocore.h Generating XML output for file avospglib.h Generating XML output for file basisset.h Generating XML output for file bond.h Generating XML output for file color3f.h Generating XML output for file coordinateblockgenerator.h Generating XML output for file coordinateset.h Generating XML output for file crystaltools.h Generating XML output for file cube.h Generating XML output for file dihedraliterator.h Generating XML output for file elementdata.h Generating XML output for file elements.h Generating XML output for file gaussianset.h Generating XML output for file gaussiansettools.h Generating XML output for file graph.h Generating XML output for file layer.h Generating XML output for file layermanager.h Generating XML output for file matrix.h Generating XML output for file mdlvalence_p.h Generating XML output for file mesh.h Generating XML output for file mutex.h Generating XML output for file nameatomtyper.h Generating XML output for file neighborperceiver.h Generating XML output for file residue.h Generating XML output for file residuecolors.h Generating XML output for file residuedata.h Generating XML output for file ringperceiver.h Generating XML output for file secondarystructure.h Generating XML output for file sharedmutex.h Generating XML output for file slaterset.h Generating XML output for file slatersettools.h Generating XML output for file spacegroupdata.h Generating XML output for file spacegroups.h Generating XML output for file symbolatomtyper.h Generating XML output for file types.h Generating XML output for file unitcell.h Generating XML output for file variant-inline.h Generating XML output for file variant.h Generating XML output for file variantmap.h Generating XML output for file vector.h Generating XML output for file cjsonformat.h Generating XML output for file cmlformat.h Generating XML output for file dcdformat.h Generating XML output for file fileformat.h Generating XML output for file fileformatmanager.h Generating XML output for file gromacsformat.h Generating XML output for file hdf5dataformat.h Generating XML output for file lammpsformat.h Generating XML output for file mdlformat.h Generating XML output for file mmtfformat.h Generating XML output for file pdbformat.h Generating XML output for file trrformat.h Generating XML output for file turbomoleformat.h Generating XML output for file vaspformat.h Generating XML output for file xyzformat.h Generating XML output for file batchjob.h Generating XML output for file client.h Generating XML output for file jobobject.h Generating XML output for file jsonrpcclient.h Generating XML output for file inputgenerator.h Generating XML output for file inputgeneratordialog.h Generating XML output for file inputgeneratorwidget.h Generating XML output for file molequeuedialog.h Generating XML output for file molequeuemanager.h Generating XML output for file molequeuequeuelistmodel.h Generating XML output for file molequeuewidget.h Generating XML output for file matrixserialization.h Generating XML output for file moleculedeserializer.h Generating XML output for file moleculeserializer.h Generating XML output for file utils.h Generating XML output for file backgroundfileformat.h Generating XML output for file colorbutton.h Generating XML output for file containerwidget.h Generating XML output for file customelementdialog.h Generating XML output for file elementdetail_p.h Generating XML output for file elementitem_p.h Generating XML output for file elementtranslator.h Generating XML output for file extensionplugin.h Generating XML output for file filebrowsewidget.h Generating XML output for file fileformatdialog.h Generating XML output for file generichighlighter.h Generating XML output for file hydrogentools.h Generating XML output for file interfacescript.h Generating XML output for file interfacewidget.h Generating XML output for file jsonwidget.h Generating XML output for file layermodel.h Generating XML output for file meshgenerator.h Generating XML output for file core/molecule.h Generating XML output for file qtgui/molecule.h Generating XML output for file moleculemodel.h Generating XML output for file multiviewwidget.h Generating XML output for file periodictablescene_p.h Generating XML output for file periodictableview.h Generating XML output for file persistentatom.h Generating XML output for file persistentbond.h Generating XML output for file pluginlayermanager.h Generating XML output for file pythonscript.h Generating XML output for file rwlayermanager.h Generating XML output for file rwmolecule.h Generating XML output for file rwmolecule_undo.h Generating XML output for file sceneplugin.h Generating XML output for file scenepluginmodel.h Generating XML output for file scriptloader.h Generating XML output for file toolplugin.h Generating XML output for file core/utilities.h Generating XML output for file qtgui/utilities.h Generating XML output for file viewfactory.h Generating XML output for file activeobjects.h Generating XML output for file glwidget.h Generating XML output for file qttextrenderstrategy.h Generating XML output for file gamessukout.h Generating XML output for file gamessus.h Generating XML output for file gaussiancube.h Generating XML output for file gaussianfchk.h Generating XML output for file molden.h Generating XML output for file mopacaux.h Generating XML output for file nwchemjson.h Generating XML output for file nwchemlog.h Generating XML output for file ambientocclusionspheregeometry.h Generating XML output for file arrowgeometry.h Generating XML output for file avogadrogl.h Generating XML output for file avogadrorendering.h Generating XML output for file beziergeometry.h Generating XML output for file bsplinegeometry.h Generating XML output for file bufferobject.h Generating XML output for file camera.h Generating XML output for file cartoongeometry.h Generating XML output for file curvegeometry.h Generating XML output for file cylindergeometry.h Generating XML output for file dashedlinegeometry.h Generating XML output for file drawable.h Generating XML output for file geometrynode.h Generating XML output for file geometryvisitor.h Generating XML output for file glrenderer.h Generating XML output for file glrendervisitor.h Generating XML output for file groupnode.h Generating XML output for file linestripgeometry.h Generating XML output for file meshgeometry.h Generating XML output for file node.h Generating XML output for file povrayvisitor.h Generating XML output for file primitive.h Generating XML output for file scene.h Generating XML output for file shader.h Generating XML output for file shaderprogram.h Generating XML output for file spheregeometry.h Generating XML output for file textlabel2d.h Generating XML output for file textlabel3d.h Generating XML output for file textlabelbase.h Generating XML output for file textproperties.h Generating XML output for file textrenderstrategy.h Generating XML output for file texture2d.h Generating XML output for file transformnode.h Generating XML output for file visitor.h Generating XML output for file volumegeometry.h Generating XML output for file vrmlvisitor.h Generating XML output for file vtkAvogadroActor.h Generating XML output for file vtkglwidget.h Generating XML output for file vtkplot.h Generating XML output for file mainpage.dox Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/docs/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 6211/65536 hits=31731 misses=7797 symbol lookup cache used 6756/65536 hits=52779 misses=6756 finished... ~/build/BUILD/avogadrolibs-1.97.0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.pR8Xxb make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadrolibs-1.97.0 -B/builddir/build/BUILD/avogadrolibs-1.97.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.97.0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/bodr/CMakeFiles/bodrparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' + popd + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.97.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64 'INSTALL=/usr/bin/install -p' -C build [ 0%] Built target bodrparse /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/encodefile/CMakeFiles/encodefile.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target encodefile /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/resdata/CMakeFiles/resdataparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target resdataparse /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct/CMakeFiles/struct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'thirdparty/struct/CMakeFiles/struct.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target struct /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'thirdparty/libgwavi/CMakeFiles/gwavi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target gwavi /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core/CMakeFiles/AvogadroCore.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/core/CMakeFiles/AvogadroCore.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Built target AvogadroCore /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc/CMakeFiles/AvogadroCalc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/calc/CMakeFiles/AvogadroCalc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Built target AvogadroCalc /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/io/CMakeFiles/AvogadroIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Built target AvogadroIO /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Built target AvogadroQuantumIO /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory 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avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avobabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Built target avobabel /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/qube.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Built target qube /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering 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avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtGui /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make 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/builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target AvogadroQtOpenGL /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen 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/usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target AvogadroMoleQueue /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target QTAIMScenePlugin_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target QTAIMScenePlugin /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target ThreeDMol_autogen /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target ThreeDMol /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target ApplyColors_autogen /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target ApplyColors /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Built target BondCentric_autogen /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target BondCentric /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target Bonding_autogen /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Built target Bonding /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Cartoons_autogen /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Cartoons /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target CoordinateEditor_autogen /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Built target CoordinateEditor /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CopyPaste_autogen /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CopyPaste /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target Crystal_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Built target Crystal /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target CrystalScene_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target CrystalScene /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target CustomElements_autogen /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target CustomElements /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target Editor_autogen /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target Editor /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target FetchPDB_autogen /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target FetchPDB /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target Focus_autogen /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target Focus /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target Hydrogens_autogen /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Built target Hydrogens /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Built target ImportPQR_autogen /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Built target ImportPQR /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target NucleicInput_autogen /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target NucleicInput /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target InsertFragment_autogen /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Built target InsertFragment /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target Label_autogen /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target Label /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target LabelEditor_autogen /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target LabelEditor /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target LammpsInput_autogen /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target LammpsInput /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target LineFormatInput_autogen /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target LineFormatInput /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target Manipulator_autogen /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target Manipulator /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target MeasureTool_autogen /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target MeasureTool /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target MolecularProperties_autogen /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target MolecularProperties /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target MongoChem_autogen /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Built target MongoChem /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Built target Navigator_autogen /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target Navigator /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target NetworkDatabases_autogen /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target NetworkDatabases /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target OpenBabel_autogen /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Built target OpenBabel /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Automatic MOC for target OpenMMInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Built target OpenMMInput_autogen /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Built target OpenMMInput /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Built target PlayerTool_autogen /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PlayerTool /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Automatic MOC for target PropertyTables cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PropertyTables_autogen /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Built target PropertyTables /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Built target POVRay_autogen /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Built target POVRay /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Built target ResetView_autogen /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target ResetView /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target Select_autogen /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Built target Select /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Selection_autogen /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target Selection /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target SpaceGroup_autogen /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target SpaceGroup /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Automatic MOC for target Surfaces cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target Surfaces_autogen /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target Surfaces /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target SVG_autogen /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Built target SVG /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Built target Spectra_autogen /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target Spectra /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target VRML_autogen /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target VRML /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target apbs_autogen /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Built target apbs /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Automatic MOC for target Cp2kInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Built target Cp2kInput_autogen /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Cp2kInput /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target GamessInput_autogen /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target GamessInput /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Automatic MOC for target commands cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target commands_autogen /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target commands /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target QuantumInput_autogen /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target QuantumInput /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target ScriptFileFormats_autogen /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target ScriptFileFormats /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target ScriptCharges_autogen /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Built target ScriptCharges /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Automatic MOC for target PluginDownloader cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target PluginDownloader_autogen /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target PluginDownloader /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target BallStick_autogen /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target BallStick /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target CloseContacts_autogen /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target CloseContacts /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Built target Force_autogen /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Built target Force /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Licorice_autogen /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Licorice /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Meshes_autogen /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Built target Meshes /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target NonCovalent_autogen /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target NonCovalent /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target VanDerWaals_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Built target VanDerWaals /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Built target VanDerWaalsAO_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target VanDerWaalsAO /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target Wireframe_autogen /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Built target Wireframe /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Built target OverlayAxes_autogen /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target OverlayAxes /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target QTAIMExtension_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target QTAIMExtension /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Automatic MOC for target AvogadroQtPlugins cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target AvogadroQtPlugins_autogen /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Built target AvogadroQtPlugins make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/AvogadroLibs/avogadrolibs/README.md -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/AvogadroLibs/avogadrolibs/CONTRIBUTING.md -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/AvogadroLibs/avogadrolibs/LICENSE -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/cmake/avogadrolibs/AvogadroLibsConfig.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/cmake/avogadrolibs/AvogadroLibsConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/cmake/avogadrolibs/FindEigen3.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/cmake/avogadrolibs/FindGLEW.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/cmake/avogadrolibs/FindLibArchive.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/cmake/avogadrolibs/Findlibmsym.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/cmake/avogadrolibs/AvogadroLibsTargets.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/cmake/avogadrolibs/AvogadroLibsTargets-release.cmake -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/avogadro2/libgwavi.a -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/angletools.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/angleiterator.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/array.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/atom.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/atomtyper.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/atomtyper-inline.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/atomutilities.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/avogadrocore.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/basisset.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/bond.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/color3f.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/coordinateset.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/coordinateblockgenerator.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/crystaltools.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/cube.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/dihedraliterator.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/elements.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/gaussianset.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/gaussiansettools.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/graph.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/layer.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/layermanager.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/matrix.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/mesh.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/molecule.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/mutex.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/nameatomtyper.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/neighborperceiver.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/residue.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/ringperceiver.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/secondarystructure.h -- Installing: 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Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/variant-inline.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/variantmap.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/vector.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/version.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/sharedmutex.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/avospglib.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/core/avogadrocoreexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroCore.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroCore.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroCore.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroCore.so -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/calc/chargemodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/calc/chargemanager.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/calc/defaultmodel.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/calc/avogadrocalcexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroCalc.so.1.97.0 -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/dashedlinegeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/drawable.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/geometrynode.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/geometryvisitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/groupnode.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/glrenderer.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/glrendervisitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/linestripgeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/meshgeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/node.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/povrayvisitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/primitive.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/scene.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/shader.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/shaderprogram.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/spheregeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/textlabel2d.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/textlabel3d.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/textlabelbase.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/textproperties.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/textrenderstrategy.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/texture2d.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/transformnode.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/visitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/volumegeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/vrmlvisitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/rendering/avogadrorenderingexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroRendering.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroRendering.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroRendering.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroRendering.so -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/qtgui/backgroundfileformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/qtgui/colorbutton.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/qtgui/containerwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/qtgui/customelementdialog.h -- Installing: 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Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroQtOpenGL.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroQtOpenGL.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroQtOpenGL.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroQtOpenGL.so -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/molequeue/batchjob.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/molequeue/inputgenerator.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/include/avogadro2/avogadro/molequeue/inputgeneratordialog.h -- Installing: 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Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' + cp -a /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/ + /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/antechamber.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/xtb.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/formatScripts/zyx.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/dalton.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/gaussian.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/molpro.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/mopac.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/nwchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/orca.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/psi4.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/pyscf.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/qchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/terachem.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/antechamber.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/xtb.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/formatScripts/zyx.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/dalton.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/gaussian.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/molpro.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/mopac.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/nwchem.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/orca.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/psi4.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/pyscf.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/qchem.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/terachem.py: no change + ln -sf /usr/lib64/python3.11/site-packages/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/avogadro2/scripts + chrpath -d /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroCalc.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroCore.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroMoleQueue.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroQtGui.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroQtOpenGL.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroQtPlugins.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroQuantumIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/libAvogadroRendering.so + rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.97.0-8.fc38 --unique-debug-suffix -1.97.0-8.fc38.x86_64 --unique-debug-src-base avogadro2-libs-1.97.0-8.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadrolibs-1.97.0 find-debuginfo: starting Extracting debug info from 9 files /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal /usr/bin/gdb.minimal DWARF-compressing 9 files sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/avogadro2-libs-1.97.0-8.fc38.x86_64 12408 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/formatScripts/zyx.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/terachem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/qchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/pyscf.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/psi4.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/orca.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/nwchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/mopac.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/molpro.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/gaussian.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/dalton.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: avogadro2-libs-1.97.0-8.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.vyC69y + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi/README-libgwavi.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/README-avogenerators.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Te3ZmH + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/licenses/avogadro2-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/molecules/LICENSE-molecules /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/licenses/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.11/site-packages/avogadro2/scripts Provides: avogadro2-libs = 1.97.0-8.fc38 avogadro2-libs(x86-64) = 1.97.0-8.fc38 avogadro2-libs-static = 0:1.97.0-8.fc38 libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) python-avogadro2-libs = 1.97.0-8.fc38 python3.11-avogadro2-libs = 1.97.0-8.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) libGL.so.1()(64bit) libGLEW.so.2.2()(64bit) libQt5Concurrent.so.5()(64bit) libQt5Concurrent.so.5(Qt_5)(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libarchive.so.13()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libhdf5.so.200()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsymspg.so.1()(64bit) python(abi) = 3.11 rtld(GNU_HASH) Obsoletes: python-avogadro2-libs < 1.97.0-8.fc38 Processing files: avogadro2-libs-devel-1.97.0-8.fc38.x86_64 Provides: avogadro2-libs-devel = 1.97.0-8.fc38 avogadro2-libs-devel(x86-64) = 1.97.0-8.fc38 cmake(AvogadroLibs) = 1.97.0 cmake(avogadrolibs) = 1.97.0 libgwavi-static Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) Processing files: avogadro2-libs-doc-1.97.0-8.fc38.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.JrWRkP + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/build/docs/html /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/doc/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.legZC5 + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/licenses/avogadro2-libs-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/licenses/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64/usr/share/licenses/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: avogadro2-libs-doc = 1.97.0-8.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debugsource-1.97.0-8.fc38.x86_64 Provides: avogadro2-libs-debugsource = 1.97.0-8.fc38 avogadro2-libs-debugsource(x86-64) = 1.97.0-8.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debuginfo-1.97.0-8.fc38.x86_64 Provides: avogadro2-libs-debuginfo = 1.97.0-8.fc38 avogadro2-libs-debuginfo(x86-64) = 1.97.0-8.fc38 debuginfo(build-id) = 166ef04ff979a08c8de634eba1037cf9312093b8 debuginfo(build-id) = 38bdfba3a3ea801aff8352f5772e286009f774de debuginfo(build-id) = 39c28ccd4c23def9da21b9f40e9b74e9c0e2580a debuginfo(build-id) = 6ada32490ce3943615245bbb3ad8425ac3ca67d2 debuginfo(build-id) = 773546ffb7c19c17476d05ce2e1ab23315a7986b debuginfo(build-id) = 9538840ac340f7abc67d27bf94f60f2b656f242e debuginfo(build-id) = c86471a2c6bd61d03a8b64f73dbea29e32738824 debuginfo(build-id) = c8e185bff635e0bab8a838550c14c35338a2d0fd debuginfo(build-id) = dfa57b04892ba449e015f86adc703e20c0f8b629 libAvogadroCalc.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) libAvogadroCore.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) libAvogadroIO.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) libAvogadroMoleQueue.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) libAvogadroQtGui.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) libAvogadroQtOpenGL.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) libAvogadroQtPlugins.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) libAvogadroQuantumIO.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) libAvogadroRendering.so.1.97.0-1.97.0-8.fc38.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: avogadro2-libs-debugsource(x86-64) = 1.97.0-8.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64 Wrote: /builddir/build/RPMS/avogadro2-libs-1.97.0-8.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.97.0-8.fc38.noarch.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debugsource-1.97.0-8.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.97.0-8.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.97.0-8.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.zodPIF + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-8.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.NDUWTH + umask 022 + cd /builddir/build/BUILD + rm -rf avogadrolibs-1.97.0 avogadrolibs-1.97.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.11/site-packages/avogadro2/scripts Finish: rpmbuild avogadro2-libs-1.97.0-8.fc38.src.rpm Finish: build phase for avogadro2-libs-1.97.0-8.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1695149265.663230/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-x86_64-1695149265.663230/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1695149265.663230/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.97.0-8.fc38.src.rpm) Config(child) 14 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "avogadro2-libs-devel", "epoch": null, "version": "1.97.0", "release": "8.fc38", "arch": "x86_64" }, { "name": "avogadro2-libs-doc", "epoch": null, "version": "1.97.0", "release": "8.fc38", "arch": "noarch" }, { "name": "avogadro2-libs-debuginfo", "epoch": null, "version": "1.97.0", "release": "8.fc38", "arch": "x86_64" }, { "name": "avogadro2-libs", "epoch": null, "version": "1.97.0", "release": "8.fc38", "arch": "src" }, { "name": "avogadro2-libs-debugsource", "epoch": null, "version": "1.97.0", "release": "8.fc38", "arch": "x86_64" }, { "name": "avogadro2-libs", "epoch": null, "version": "1.97.0", "release": "8.fc38", "arch": "x86_64" } ] } RPMResults finished