Warning: Permanently added '3.238.157.173' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7982829-fedora-41-x86_64 --chroot fedora-41-x86_64
Version: 0.73
PID: 13770
Logging PID: 13771
Task:
{'allow_user_ssh': False,
'appstream': False,
'background': True,
'build_id': 7982829,
'buildroot_pkgs': [],
'chroot': 'fedora-41-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': '5c22c45b124b02234114050533c2a60b2a5fd4df',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/smoldyn',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'smoldyn',
'package_version': '2.72-6',
'project_dirname': 'automatic-obsoletes',
'project_name': 'automatic-obsoletes',
'project_owner': 'torsava',
'repo_priority': None,
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-41-x86_64/',
'id': 'copr_base',
'name': 'Copr repository',
'priority': None}],
'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/msuchy',
'source_json': {},
'source_type': None,
'ssh_public_keys': None,
'submitter': 'https://src.fedoraproject.org/user/msuchy',
'tags': [],
'task_id': '7982829-fedora-41-x86_64',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn'...
Running: git checkout 5c22c45b124b02234114050533c2a60b2a5fd4df --
cmd: ['git', 'checkout', '5c22c45b124b02234114050533c2a60b2a5fd4df', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn
rc: 0
stdout:
stderr: Note: switching to '5c22c45b124b02234114050533c2a60b2a5fd4df'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 5c22c45 automatic import of smoldyn
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading Smoldyn-2.72.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o Smoldyn-2.72.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/smoldyn/Smoldyn-2.72.tar.gz/md5/55177f82859a034ac5418e6894089192/Smoldyn-2.72.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 96.4M 100 96.4M 0 0 504M 0 --:--:-- --:--:-- --:--:-- 504M
INFO: Reading stdout from command: md5sum Smoldyn-2.72.tar.gz
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725502812.205025 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725502812.205025 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn/smoldyn.spec) Config(fedora-41-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725502812.205025/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41
INFO: Pulling image: registry.fedoraproject.org/fedora:41
INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-x86_64-bootstrap-1725502812.205025/root
INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount
INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/f90a96f734823c955512bea1f3375745a611876676ecdcedd9d21240640f1467/merged
INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/f90a96f734823c955512bea1f3375745a611876676ecdcedd9d21240640f1467/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1725502812.205025/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.19.92-6.fc41.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
dnf5-5.2.5.0-2.fc41.x86_64
dnf5-plugins-5.2.5.0-2.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
updates 100% | 101.5 KiB/s | 28.3 KiB | 00m00s
fedora 100% | 95.7 KiB/s | 25.6 KiB | 00m00s
Copr repository 100% | 96.1 KiB/s | 1.5 KiB | 00m00s
Copr repository 100% | 76.6 MiB/s | 4.1 MiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing group/module packages:
bash x86_64 5.2.32-1.fc41 fedora 8.2 MiB
bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB
coreutils x86_64 9.5-9.fc41 fedora 5.6 MiB
cpio x86_64 2.15-2.fc41 fedora 1.1 MiB
diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB
fedora-release-common noarch 41-0.21 fedora 19.4 KiB
findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB
gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB
glibc-minimal-langpack x86_64 2.40-3.fc41 fedora 0.0 B
grep x86_64 3.11-9.fc41 fedora 1.0 MiB
gzip x86_64 1.13-2.fc41 fedora 389.0 KiB
info x86_64 7.1-3.fc41 fedora 361.8 KiB
patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB
redhat-rpm-config noarch 293-1.fc41 fedora 183.5 KiB
rpm-build x86_64 4.19.93-1.fc41 copr_base 194.2 KiB
sed x86_64 4.9-3.fc41 fedora 861.5 KiB
shadow-utils x86_64 2:4.15.1-9.fc41 fedora 4.1 MiB
tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB
unzip x86_64 6.0-64.fc41 fedora 386.8 KiB
util-linux x86_64 2.40.2-8.fc41 copr_base 3.6 MiB
which x86_64 2.21-42.fc41 fedora 80.2 KiB
xz x86_64 1:5.6.2-2.fc41 fedora 1.2 MiB
Installing dependencies:
add-determinism x86_64 0.3.6-1.fc41 fedora 2.2 MiB
alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB
ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB
audit-libs x86_64 4.0.2-1.fc41 copr_base 331.3 KiB
authselect x86_64 1.5.0-7.fc41 fedora 153.5 KiB
authselect-libs x86_64 1.5.0-7.fc41 fedora 818.3 KiB
basesystem noarch 11-21.fc41 fedora 0.0 B
binutils x86_64 2.43-3.fc41 fedora 27.5 MiB
build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 fedora 735.0 B
bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB
ca-certificates noarch 2024.2.68_v8.0.302-3.fc41 fedora 2.3 MiB
coreutils-common x86_64 9.5-9.fc41 fedora 11.2 MiB
cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB
crypto-policies noarch 20240826-1.gite824389.fc41 fedora 136.9 KiB
curl x86_64 8.9.1-2.fc41 fedora 796.2 KiB
cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB
debugedit x86_64 5.0-17.fc41 fedora 199.3 KiB
dwz x86_64 0.15-7.fc41 fedora 290.9 KiB
ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB
efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB
elfutils x86_64 0.191-8.fc41 fedora 2.6 MiB
elfutils-debuginfod-client x86_64 0.191-8.fc41 fedora 64.9 KiB
elfutils-default-yama-scope noarch 0.191-8.fc41 fedora 1.8 KiB
elfutils-libelf x86_64 0.191-8.fc41 fedora 1.2 MiB
elfutils-libs x86_64 0.191-8.fc41 fedora 646.2 KiB
fedora-gpg-keys noarch 41-0.4 fedora 126.4 KiB
fedora-release noarch 41-0.21 fedora 0.0 B
fedora-release-identity-basic noarch 41-0.21 fedora 684.0 B
fedora-repos noarch 41-0.4 fedora 4.9 KiB
file x86_64 5.45-7.fc41 fedora 103.5 KiB
file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB
filesystem x86_64 3.18-23.fc41 fedora 106.0 B
fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB
forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB
fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B
gdb-minimal x86_64 15.1-1.fc41 fedora 13.0 MiB
gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB
gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB
ghc-srpm-macros noarch 1.9.1-2.fc41 fedora 747.0 B
glibc x86_64 2.40-3.fc41 fedora 6.7 MiB
glibc-common x86_64 2.40-3.fc41 fedora 1.0 MiB
glibc-gconv-extra x86_64 2.40-3.fc41 fedora 8.0 MiB
gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB
gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB
go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB
jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB
kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB
keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB
krb5-libs x86_64 1.21.3-2.fc41 fedora 2.3 MiB
libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB
libarchive x86_64 3.7.4-3.fc41 fedora 922.6 KiB
libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB
libblkid x86_64 2.40.2-8.fc41 copr_base 262.5 KiB
libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB
libcap x86_64 2.70-4.fc41 fedora 220.2 KiB
libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB
libcom_err x86_64 1.47.1-3.fc41 fedora 67.2 KiB
libcurl x86_64 8.9.1-2.fc41 fedora 818.1 KiB
libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB
libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB
libfdisk x86_64 2.40.2-8.fc41 copr_base 362.9 KiB
libffi x86_64 3.4.6-3.fc41 fedora 86.4 KiB
libgcc x86_64 14.2.1-1.fc41 fedora 274.6 KiB
libgomp x86_64 14.2.1-1.fc41 fedora 523.4 KiB
libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB
libmount x86_64 2.40.2-8.fc41 copr_base 351.8 KiB
libnghttp2 x86_64 1.62.1-2.fc41 fedora 166.1 KiB
libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB
libpkgconf x86_64 2.3.0-1.fc41 fedora 78.2 KiB
libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB
libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB
libselinux x86_64 3.7-5.fc41 fedora 181.0 KiB
libsemanage x86_64 3.7-2.fc41 fedora 293.5 KiB
libsepol x86_64 3.7-2.fc41 fedora 817.8 KiB
libsmartcols x86_64 2.40.2-8.fc41 copr_base 180.4 KiB
libssh x86_64 0.10.6-8.fc41 fedora 513.3 KiB
libssh-config noarch 0.10.6-8.fc41 fedora 277.0 B
libstdc++ x86_64 14.2.1-1.fc41 fedora 2.8 MiB
libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB
libtirpc x86_64 1.3.5-0.fc41 fedora 202.7 KiB
libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB
libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB
libuuid x86_64 2.40.2-8.fc41 copr_base 41.4 KiB
libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB
libxcrypt x86_64 4.4.36-7.fc41 fedora 266.8 KiB
libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB
libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB
lua-libs x86_64 5.4.6-6.fc41 fedora 285.0 KiB
lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB
lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB
mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB
ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB
ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB
ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB
openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B
openldap x86_64 2.6.8-5.fc41 fedora 644.2 KiB
openssl-libs x86_64 1:3.2.2-5.fc41 fedora 7.8 MiB
p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB
p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB
package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB
pam x86_64 1.6.1-5.fc41 fedora 1.8 MiB
pam-libs x86_64 1.6.1-5.fc41 fedora 139.0 KiB
pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB
pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB
perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B
pkgconf x86_64 2.3.0-1.fc41 fedora 88.6 KiB
pkgconf-m4 noarch 2.3.0-1.fc41 fedora 14.4 KiB
pkgconf-pkg-config x86_64 2.3.0-1.fc41 fedora 989.0 B
popt x86_64 1.19-7.fc41 fedora 136.9 KiB
publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB
pyproject-srpm-macros noarch 1.14.0-1.fc41 fedora 1.9 KiB
python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB
qt5-srpm-macros noarch 5.15.14-3.fc41 fedora 500.0 B
qt6-srpm-macros noarch 6.7.2-3.fc41 fedora 456.0 B
readline x86_64 8.2-10.fc41 fedora 493.2 KiB
rpm x86_64 4.19.93-1.fc41 copr_base 3.1 MiB
rpm-build-libs x86_64 4.19.93-1.fc41 copr_base 206.7 KiB
rpm-libs x86_64 4.19.93-1.fc41 copr_base 721.9 KiB
rpm-sequoia x86_64 1.7.0-2.fc41 fedora 2.4 MiB
rust-srpm-macros noarch 26.3-3.fc41 copr_base 4.8 KiB
setup noarch 2.15.0-5.fc41 fedora 720.7 KiB
sqlite-libs x86_64 3.46.1-1.fc41 fedora 1.4 MiB
systemd-libs x86_64 256.5-1.fc41 fedora 2.0 MiB
util-linux-core x86_64 2.40.2-8.fc41 copr_base 1.5 MiB
xxhash-libs x86_64 0.8.2-3.fc41 fedora 88.5 KiB
xz-libs x86_64 1:5.6.2-2.fc41 fedora 214.4 KiB
zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB
zip x86_64 3.0-41.fc41 fedora 703.2 KiB
zlib-ng-compat x86_64 2.1.7-2.fc41 fedora 134.0 KiB
zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB
Installing groups:
Buildsystem building group
Transaction Summary:
Installing: 152 packages
Total size of inbound packages is 53 MiB. Need to download 0 B.
After this operation 180 MiB will be used (install 180 MiB, remove 0 B).
[ 1/152] tar-2:1.35-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 2/152] bzip2-0:1.0.8-19.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 3/152] redhat-rpm-config-0:293-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 4/152] unzip-0:6.0-64.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 5/152] cpio-0:2.15-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 6/152] which-0:2.21-42.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 7/152] bash-0:5.2.32-1.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 8/152] coreutils-0:9.5-9.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 9/152] grep-0:3.11-9.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 10/152] patch-0:2.7.6-25.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 11/152] sed-0:4.9-3.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 12/152] shadow-utils-2:4.15.1-9.fc41. 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 13/152] diffutils-0:3.10-8.fc41.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 14/152] fedora-release-common-0:41-0. 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 15/152] findutils-1:4.10.0-4.fc41.x86 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 16/152] glibc-minimal-langpack-0:2.40 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 17/152] gzip-0:1.13-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 18/152] info-0:7.1-3.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 19/152] xz-1:5.6.2-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 20/152] rpm-build-0:4.19.93-1.fc41.x8 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 21/152] util-linux-0:2.40.2-8.fc41.x8 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 22/152] gawk-0:5.3.0-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 23/152] glibc-0:2.40-3.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 24/152] libacl-0:2.3.2-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 25/152] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
[ 26/152] ansible-srpm-macros-0:1-16.fc 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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--------------------------------------------------------------------------------
[152/152] Total 100% | 0.0 B/s | 0.0 B | 00m00s
Running transaction
Importing PGP key 0xE99D6AD1:
Userid : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
[ 1/154] Verify package files 100% | 938.0 B/s | 152.0 B | 00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
[ 2/154] Prepare transaction 100% | 4.6 KiB/s | 152.0 B | 00m00s
[ 3/154] Installing libgcc-0:14.2.1-1. 100% | 269.8 MiB/s | 276.3 KiB | 00m00s
>>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc41.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc41.x86_64
[ 4/154] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s
[ 5/154] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s
[ 6/154] Installing fedora-release-ide 100% | 0.0 B/s | 940.0 B | 00m00s
[ 7/154] Installing fedora-gpg-keys-0: 100% | 56.1 MiB/s | 172.2 KiB | 00m00s
[ 8/154] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s
[ 9/154] Installing fedora-release-com 100% | 23.1 MiB/s | 23.7 KiB | 00m00s
[ 10/154] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s
[ 11/154] Installing setup-0:2.15.0-5.f 100% | 64.5 MiB/s | 726.1 KiB | 00m00s
>>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
>>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch
[ 12/154] Installing filesystem-0:3.18- 100% | 3.8 MiB/s | 212.5 KiB | 00m00s
[ 13/154] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s
[ 14/154] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s
[ 15/154] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s
[ 16/154] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s
[ 17/154] Installing ncurses-base-0:6.5 100% | 114.5 MiB/s | 351.7 KiB | 00m00s
[ 18/154] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s
[ 19/154] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB | 00m00s
>>> Running pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 20/154] Installing glibc-0:2.40-3.fc4 100% | 267.1 MiB/s | 6.7 MiB | 00m00s
>>> Running post-install scriptlet: glibc-0:2.40-3.fc41.x86_64
>>> Stop post-install scriptlet: glibc-0:2.40-3.fc41.x86_64
[ 21/154] Installing bash-0:5.2.32-1.fc 100% | 453.8 MiB/s | 8.2 MiB | 00m00s
>>> Running post-install scriptlet: bash-0:5.2.32-1.fc41.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.32-1.fc41.x86_64
[ 22/154] Installing glibc-common-0:2.4 100% | 209.4 MiB/s | 1.0 MiB | 00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[ 23/154] Installing glibc-gconv-extra- 100% | 289.3 MiB/s | 8.1 MiB | 00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.x86_64
[ 24/154] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB | 00m00s
[ 25/154] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.8 KiB | 00m00s
[ 26/154] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s
[ 27/154] Installing popt-0:1.19-7.fc41 100% | 70.1 MiB/s | 143.5 KiB | 00m00s
[ 28/154] Installing readline-0:8.2-10. 100% | 483.7 MiB/s | 495.3 KiB | 00m00s
[ 29/154] Installing libuuid-0:2.40.2-8 100% | 0.0 B/s | 42.5 KiB | 00m00s
[ 30/154] Installing libblkid-0:2.40.2- 100% | 257.5 MiB/s | 263.6 KiB | 00m00s
[ 31/154] Installing libattr-0:2.5.2-4. 100% | 0.0 B/s | 29.5 KiB | 00m00s
[ 32/154] Installing libacl-0:2.3.2-2.f 100% | 0.0 B/s | 40.7 KiB | 00m00s
[ 33/154] Installing libxcrypt-0:4.4.36 100% | 263.2 MiB/s | 269.5 KiB | 00m00s
[ 34/154] Installing libstdc++-0:14.2.1 100% | 395.8 MiB/s | 2.8 MiB | 00m00s
[ 35/154] Installing libzstd-0:1.5.6-2. 100% | 389.3 MiB/s | 797.2 KiB | 00m00s
[ 36/154] Installing elfutils-libelf-0: 100% | 584.6 MiB/s | 1.2 MiB | 00m00s
[ 37/154] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB | 00m00s
[ 38/154] Installing libeconf-0:0.6.2-3 100% | 0.0 B/s | 59.7 KiB | 00m00s
[ 39/154] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s
[ 40/154] Installing mpfr-0:4.2.1-5.fc4 100% | 407.1 MiB/s | 833.7 KiB | 00m00s
[ 41/154] Installing gawk-0:5.3.0-4.fc4 100% | 346.4 MiB/s | 1.7 MiB | 00m00s
[ 42/154] Installing dwz-0:0.15-7.fc41. 100% | 285.5 MiB/s | 292.3 KiB | 00m00s
[ 43/154] Installing unzip-0:6.0-64.fc4 100% | 381.1 MiB/s | 390.3 KiB | 00m00s
[ 44/154] Installing file-libs-0:5.45-7 100% | 764.2 MiB/s | 9.9 MiB | 00m00s
[ 45/154] Installing file-0:5.45-7.fc41 100% | 20.5 MiB/s | 105.0 KiB | 00m00s
>>> Running pre-install scriptlet: crypto-policies-0:20240826-1.gite824389.fc41.
>>> Stop pre-install scriptlet: crypto-policies-0:20240826-1.gite824389.fc41.noa
[ 46/154] Installing crypto-policies-0: 100% | 39.8 MiB/s | 163.2 KiB | 00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240826-1.gite824389.fc41
>>> Stop post-install scriptlet: crypto-policies-0:20240826-1.gite824389.fc41.no
[ 47/154] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB | 00m00s
[ 48/154] Installing grep-0:3.11-9.fc41 100% | 250.8 MiB/s | 1.0 MiB | 00m00s
[ 49/154] Installing xz-1:5.6.2-2.fc41. 100% | 241.0 MiB/s | 1.2 MiB | 00m00s
[ 50/154] Installing libsmartcols-0:2.4 100% | 177.2 MiB/s | 181.5 KiB | 00m00s
[ 51/154] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s
[ 52/154] Installing lua-libs-0:5.4.6-6 100% | 279.5 MiB/s | 286.2 KiB | 00m00s
[ 53/154] Installing libsepol-0:3.7-2.f 100% | 399.8 MiB/s | 818.8 KiB | 00m00s
[ 54/154] Installing libselinux-0:3.7-5 100% | 178.0 MiB/s | 182.3 KiB | 00m00s
[ 55/154] Installing sed-0:4.9-3.fc41.x 100% | 283.1 MiB/s | 869.7 KiB | 00m00s
[ 56/154] Installing findutils-1:4.10.0 100% | 371.6 MiB/s | 1.9 MiB | 00m00s
[ 57/154] Installing libmount-0:2.40.2- 100% | 344.7 MiB/s | 352.9 KiB | 00m00s
[ 58/154] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 71.0 KiB | 00m00s
[ 59/154] Installing audit-libs-0:4.0.2 100% | 325.6 MiB/s | 333.4 KiB | 00m00s
[ 60/154] Installing pam-libs-0:1.6.1-5 100% | 138.1 MiB/s | 141.4 KiB | 00m00s
[ 61/154] Installing libcap-0:2.70-4.fc 100% | 220.0 MiB/s | 225.2 KiB | 00m00s
[ 62/154] Installing systemd-libs-0:256 100% | 405.9 MiB/s | 2.0 MiB | 00m00s
[ 63/154] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.3 KiB | 00m00s
[ 64/154] Installing alternatives-0:1.3 100% | 0.0 B/s | 67.9 KiB | 00m00s
[ 65/154] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s
[ 66/154] Installing libunistring-0:1.1 100% | 432.7 MiB/s | 1.7 MiB | 00m00s
[ 67/154] Installing libidn2-0:2.3.7-2. 100% | 163.6 MiB/s | 335.1 KiB | 00m00s
[ 68/154] Installing libpsl-0:0.21.5-4. 100% | 79.7 MiB/s | 81.7 KiB | 00m00s
[ 69/154] Installing util-linux-core-0: 100% | 304.1 MiB/s | 1.5 MiB | 00m00s
[ 70/154] Installing libsemanage-0:3.7- 100% | 144.2 MiB/s | 295.2 KiB | 00m00s
[ 71/154] Installing shadow-utils-2:4.1 100% | 279.6 MiB/s | 4.2 MiB | 00m00s
[ 72/154] Installing tar-2:1.35-4.fc41. 100% | 422.6 MiB/s | 3.0 MiB | 00m00s
[ 73/154] Installing zstd-0:1.5.6-2.fc4 100% | 422.9 MiB/s | 1.7 MiB | 00m00s
[ 74/154] Installing zip-0:3.0-41.fc41. 100% | 345.2 MiB/s | 707.1 KiB | 00m00s
[ 75/154] Installing gdbm-1:1.23-7.fc41 100% | 227.4 MiB/s | 465.8 KiB | 00m00s
[ 76/154] Installing cyrus-sasl-lib-0:2 100% | 461.2 MiB/s | 2.3 MiB | 00m00s
[ 77/154] Installing libfdisk-0:2.40.2- 100% | 355.3 MiB/s | 363.9 KiB | 00m00s
[ 78/154] Installing libxml2-0:2.12.8-2 100% | 342.4 MiB/s | 1.7 MiB | 00m00s
[ 79/154] Installing bzip2-0:1.0.8-19.f 100% | 97.8 MiB/s | 100.2 KiB | 00m00s
[ 80/154] Installing add-determinism-0: 100% | 449.2 MiB/s | 2.2 MiB | 00m00s
[ 81/154] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s
[ 82/154] Installing sqlite-libs-0:3.46 100% | 357.3 MiB/s | 1.4 MiB | 00m00s
[ 83/154] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB | 00m00s
[ 84/154] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB | 00m00s
[ 85/154] Installing elfutils-default-y 100% | 510.7 KiB/s | 2.0 KiB | 00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar
[ 86/154] Installing elfutils-libs-0:0. 100% | 316.4 MiB/s | 648.0 KiB | 00m00s
[ 87/154] Installing cpio-0:2.15-2.fc41 100% | 274.9 MiB/s | 1.1 MiB | 00m00s
[ 88/154] Installing diffutils-0:3.10-8 100% | 318.1 MiB/s | 1.6 MiB | 00m00s
[ 89/154] Installing libgomp-0:14.2.1-1 100% | 512.5 MiB/s | 524.8 KiB | 00m00s
[ 90/154] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.8 KiB | 00m00s
[ 91/154] Installing libverto-0:0.3.2-9 100% | 0.0 B/s | 31.3 KiB | 00m00s
[ 92/154] Installing jansson-0:2.13.1-1 100% | 0.0 B/s | 89.7 KiB | 00m00s
[ 93/154] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 79.3 KiB | 00m00s
[ 94/154] Installing pkgconf-0:2.3.0-1. 100% | 89.0 MiB/s | 91.1 KiB | 00m00s
[ 95/154] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s
[ 96/154] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s
[ 97/154] Installing p11-kit-0:0.25.5-3 100% | 315.3 MiB/s | 2.2 MiB | 00m00s
[ 98/154] Installing p11-kit-trust-0:0. 100% | 64.0 MiB/s | 393.1 KiB | 00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64
[ 99/154] Installing xxhash-libs-0:0.8. 100% | 87.8 MiB/s | 89.9 KiB | 00m00s
[100/154] Installing libnghttp2-0:1.62. 100% | 163.2 MiB/s | 167.1 KiB | 00m00s
[101/154] Installing libtool-ltdl-0:2.4 100% | 0.0 B/s | 67.3 KiB | 00m00s
[102/154] Installing libbrotli-0:1.1.0- 100% | 273.4 MiB/s | 839.9 KiB | 00m00s
[103/154] Installing coreutils-common-0 100% | 447.6 MiB/s | 11.2 MiB | 00m00s
[104/154] Installing openssl-libs-1:3.2 100% | 460.3 MiB/s | 7.8 MiB | 00m00s
[105/154] Installing coreutils-0:9.5-9. 100% | 333.0 MiB/s | 5.7 MiB | 00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n
>>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar
[106/154] Installing ca-certificates-0: 100% | 4.4 MiB/s | 2.4 MiB | 00m01s
>>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.
>>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa
[107/154] Installing krb5-libs-0:1.21.3 100% | 328.5 MiB/s | 2.3 MiB | 00m00s
[108/154] Installing libarchive-0:3.7.4 100% | 301.0 MiB/s | 924.6 KiB | 00m00s
[109/154] Installing libtirpc-0:1.3.5-0 100% | 199.7 MiB/s | 204.5 KiB | 00m00s
[110/154] Installing gzip-0:1.13-2.fc41 100% | 192.7 MiB/s | 394.6 KiB | 00m00s
[111/154] Installing authselect-libs-0: 100% | 203.4 MiB/s | 833.2 KiB | 00m00s
[112/154] Installing cracklib-0:2.9.11- 100% | 81.5 MiB/s | 250.3 KiB | 00m00s
[113/154] Installing libpwquality-0:1.4 100% | 140.0 MiB/s | 430.1 KiB | 00m00s
[114/154] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s
[115/154] Installing pam-0:1.6.1-5.fc41 100% | 187.7 MiB/s | 1.9 MiB | 00m00s
[116/154] Installing libssh-0:0.10.6-8. 100% | 251.7 MiB/s | 515.4 KiB | 00m00s
[117/154] Installing rpm-sequoia-0:1.7. 100% | 394.5 MiB/s | 2.4 MiB | 00m00s
[118/154] Installing rpm-libs-0:4.19.93 100% | 353.2 MiB/s | 723.4 KiB | 00m00s
[119/154] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s
[120/154] Installing libevent-0:2.1.12- 100% | 439.2 MiB/s | 899.5 KiB | 00m00s
[121/154] Installing openldap-0:2.6.8-5 100% | 316.4 MiB/s | 648.0 KiB | 00m00s
[122/154] Installing libcurl-0:8.9.1-2. 100% | 400.0 MiB/s | 819.2 KiB | 00m00s
[123/154] Installing elfutils-debuginfo 100% | 65.3 MiB/s | 66.9 KiB | 00m00s
[124/154] Installing elfutils-0:0.191-8 100% | 426.7 MiB/s | 2.6 MiB | 00m00s
[125/154] Installing binutils-0:2.43-3. 100% | 430.6 MiB/s | 27.6 MiB | 00m00s
>>> Running post-install scriptlet: binutils-0:2.43-3.fc41.x86_64
>>> Stop post-install scriptlet: binutils-0:2.43-3.fc41.x86_64
[126/154] Installing gdb-minimal-0:15.1 100% | 433.0 MiB/s | 13.0 MiB | 00m00s
[127/154] Installing debugedit-0:5.0-17 100% | 197.3 MiB/s | 202.0 KiB | 00m00s
[128/154] Installing curl-0:8.9.1-2.fc4 100% | 97.5 MiB/s | 798.6 KiB | 00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc41.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc41.x86_64
[129/154] Installing rpm-0:4.19.93-1.fc 100% | 192.1 MiB/s | 2.5 MiB | 00m00s
[130/154] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s
[131/154] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s
[132/154] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s
[133/154] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s
[134/154] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s
[135/154] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s
[136/154] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s
[137/154] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s
[138/154] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s
[139/154] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s
[140/154] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s
[141/154] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s
[142/154] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s
[143/154] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s
[144/154] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s
[145/154] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.4 KiB | 00m00s
[146/154] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s
[147/154] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s
[148/154] Installing redhat-rpm-config- 100% | 185.6 MiB/s | 190.1 KiB | 00m00s
[149/154] Installing rpm-build-0:4.19.9 100% | 99.0 MiB/s | 202.7 KiB | 00m00s
[150/154] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s
[151/154] Installing util-linux-0:2.40. 100% | 204.7 MiB/s | 3.7 MiB | 00m00s
>>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc41.x86_64
>>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc41.x86_64
[152/154] Installing authselect-0:1.5.0 100% | 154.2 MiB/s | 157.9 KiB | 00m00s
[153/154] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[154/154] Installing info-0:7.1-3.fc41. 100% | 496.2 KiB/s | 362.2 KiB | 00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc41.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc41.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
Complete!
Warning: skipped PGP checks for 13 packages from repository: copr_base
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-1.fc41.x86_64
alternatives-1.30-1.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.x86_64
authselect-1.5.0-7.fc41.x86_64
authselect-libs-1.5.0-7.fc41.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.32-1.fc41.x86_64
binutils-2.43-3.fc41.x86_64
build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch
coreutils-9.5-9.fc41.x86_64
coreutils-common-9.5-9.fc41.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20240826-1.gite824389.fc41.noarch
curl-8.9.1-2.fc41.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.0-17.fc41.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-7.fc41.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.191-8.fc41.x86_64
elfutils-debuginfod-client-0.191-8.fc41.x86_64
elfutils-default-yama-scope-0.191-8.fc41.noarch
elfutils-libelf-0.191-8.fc41.x86_64
elfutils-libs-0.191-8.fc41.x86_64
fedora-gpg-keys-41-0.4.noarch
fedora-release-41-0.21.noarch
fedora-release-common-41-0.21.noarch
fedora-release-identity-basic-41-0.21.noarch
fedora-repos-41-0.4.noarch
file-5.45-7.fc41.x86_64
file-libs-5.45-7.fc41.x86_64
filesystem-3.18-23.fc41.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.2-1.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.1-1.fc41.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.40-3.fc41.x86_64
glibc-common-2.40-3.fc41.x86_64
glibc-gconv-extra-2.40-3.fc41.x86_64
glibc-minimal-langpack-2.40-3.fc41.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1-3.fc41.x86_64
jansson-2.13.1-10.fc41.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-2.fc41.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.4-3.fc41.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc41.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.70-4.fc41.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-3.fc41.x86_64
libcurl-8.9.1-2.fc41.x86_64
libeconf-0.6.2-3.fc41.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-8.fc41.x86_64
libffi-3.4.6-3.fc41.x86_64
libgcc-14.2.1-1.fc41.x86_64
libgomp-14.2.1-1.fc41.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-8.fc41.x86_64
libnghttp2-1.62.1-2.fc41.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc41.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.7-5.fc41.x86_64
libsemanage-3.7-2.fc41.x86_64
libsepol-3.7-2.fc41.x86_64
libsmartcols-2.40.2-8.fc41.x86_64
libssh-0.10.6-8.fc41.x86_64
libssh-config-0.10.6-8.fc41.noarch
libstdc++-14.2.1-1.fc41.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.5-0.fc41.x86_64
libtool-ltdl-2.4.7-12.fc41.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.2-8.fc41.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-7.fc41.x86_64
libxml2-2.12.8-2.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.6-6.fc41.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.x86_64
openssl-libs-3.2.2-5.fc41.x86_64
p11-kit-0.25.5-3.fc41.x86_64
p11-kit-trust-0.25.5-3.fc41.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-5.fc41.x86_64
pam-libs-1.6.1-5.fc41.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc41.x86_64
pkgconf-m4-2.3.0-1.fc41.noarch
pkgconf-pkg-config-2.3.0-1.fc41.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.14.0-1.fc41.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.14-3.fc41.noarch
qt6-srpm-macros-6.7.2-3.fc41.noarch
readline-8.2-10.fc41.x86_64
redhat-rpm-config-293-1.fc41.noarch
rpm-4.19.93-1.fc41.x86_64
rpm-build-4.19.93-1.fc41.x86_64
rpm-build-libs-4.19.93-1.fc41.x86_64
rpm-libs-4.19.93-1.fc41.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
rust-srpm-macros-26.3-3.fc41.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.15.1-9.fc41.x86_64
sqlite-libs-3.46.1-1.fc41.x86_64
systemd-libs-256.5-1.fc41.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-64.fc41.x86_64
util-linux-2.40.2-8.fc41.x86_64
util-linux-core-2.40.2-8.fc41.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-3.fc41.x86_64
xz-5.6.2-2.fc41.x86_64
xz-libs-5.6.2-2.fc41.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.1.7-2.fc41.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1725408000
Wrote: /builddir/build/SRPMS/smoldyn-2.72-6.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-41-x86_64-1725502812.205025/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1725502812.205025/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-tp1731at/smoldyn/smoldyn.spec) Config(child) 0 minutes 13 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.72-6.fc41.src.rpm) Config(fedora-41-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725502812.205025/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725502812.205025/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1725502812.205025/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.19.92-6.fc41.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
dnf5-5.2.5.0-2.fc41.x86_64
dnf5-plugins-5.2.5.0-2.fc41.x86_64
Finish: chroot init
Start: build phase for smoldyn-2.72-6.fc41.src.rpm
Start: build setup for smoldyn-2.72-6.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1725408000
Wrote: /builddir/build/SRPMS/smoldyn-2.72-6.fc41.src.rpm
Updating and loading repositories:
updates 100% | 101.8 KiB/s | 28.3 KiB | 00m00s
fedora 100% | 97.2 KiB/s | 25.6 KiB | 00m00s
Copr repository 100% | 128.1 KiB/s | 1.5 KiB | 00m00s
Copr repository 100% | 111.8 MiB/s | 4.1 MiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing:
boost-devel x86_64 1.83.0-8.fc41 copr_base 143.0 MiB
cmake x86_64 3.28.3-7.fc41 fedora 31.6 MiB
freeglut-devel x86_64 3.6.0-2.fc41 fedora 2.3 MiB
gcc x86_64 14.2.1-1.fc41 fedora 104.1 MiB
gcc-c++ x86_64 14.2.1-1.fc41 fedora 38.2 MiB
libXi-devel x86_64 1.8.1-6.fc41 fedora 132.6 KiB
libXmu-devel x86_64 1.2.1-2.fc41 fedora 66.2 KiB
libglvnd-devel x86_64 1:1.7.0-5.fc41 fedora 2.1 MiB
libtiff-devel x86_64 4.6.0-6.fc41 fedora 709.2 KiB
make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB
perl-macros noarch 4:5.40.0-511.fc41 fedora 5.5 KiB
pybind11-devel x86_64 2.13.1-3.fc41 fedora 846.0 KiB
python3-devel x86_64 3.13.0~rc1-2.fc41 fedora 1.8 MiB
python3-flaky noarch 3.8.1-3.fc41 fedora 129.4 KiB
python3-matplotlib x86_64 3.9.1-2.fc41 fedora 21.1 MiB
python3-setuptools noarch 69.2.0-8.fc41 fedora 7.2 MiB
python3-wheel noarch 1:0.43.0-4.fc41 fedora 516.1 KiB
xorg-x11-server-Xvfb x86_64 1.20.14-37.fc41 fedora 1.9 MiB
zlib-ng-compat-devel x86_64 2.1.7-2.fc41 fedora 106.8 KiB
Installing dependencies:
abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB
annobin-docs noarch 12.69-1.fc41 fedora 97.7 KiB
annobin-plugin-gcc x86_64 12.69-1.fc41 fedora 985.0 KiB
boost x86_64 1.83.0-8.fc41 copr_base 1.3 KiB
boost-atomic x86_64 1.83.0-8.fc41 copr_base 25.0 KiB
boost-chrono x86_64 1.83.0-8.fc41 copr_base 41.6 KiB
boost-container x86_64 1.83.0-8.fc41 copr_base 69.5 KiB
boost-context x86_64 1.83.0-8.fc41 copr_base 16.5 KiB
boost-contract x86_64 1.83.0-8.fc41 copr_base 103.2 KiB
boost-coroutine x86_64 1.83.0-8.fc41 copr_base 25.1 KiB
boost-date-time x86_64 1.83.0-8.fc41 copr_base 16.3 KiB
boost-fiber x86_64 1.83.0-8.fc41 copr_base 82.8 KiB
boost-filesystem x86_64 1.83.0-8.fc41 copr_base 147.6 KiB
boost-graph x86_64 1.83.0-8.fc41 copr_base 346.3 KiB
boost-iostreams x86_64 1.83.0-8.fc41 copr_base 94.7 KiB
boost-json x86_64 1.83.0-8.fc41 copr_base 329.1 KiB
boost-locale x86_64 1.83.0-8.fc41 copr_base 606.3 KiB
boost-log x86_64 1.83.0-8.fc41 copr_base 1.5 MiB
boost-math x86_64 1.83.0-8.fc41 copr_base 662.9 KiB
boost-nowide x86_64 1.83.0-8.fc41 copr_base 24.9 KiB
boost-numpy3 x86_64 1.83.0-8.fc41 copr_base 57.6 KiB
boost-program-options x86_64 1.83.0-8.fc41 copr_base 272.7 KiB
boost-python3 x86_64 1.83.0-8.fc41 copr_base 254.4 KiB
boost-random x86_64 1.83.0-8.fc41 copr_base 33.7 KiB
boost-regex x86_64 1.83.0-8.fc41 copr_base 275.0 KiB
boost-serialization x86_64 1.83.0-8.fc41 copr_base 441.6 KiB
boost-stacktrace x86_64 1.83.0-8.fc41 copr_base 68.1 KiB
boost-system x86_64 1.83.0-8.fc41 copr_base 16.3 KiB
boost-test x86_64 1.83.0-8.fc41 copr_base 643.0 KiB
boost-thread x86_64 1.83.0-8.fc41 copr_base 136.8 KiB
boost-timer x86_64 1.83.0-8.fc41 copr_base 25.1 KiB
boost-type_erasure x86_64 1.83.0-8.fc41 copr_base 58.2 KiB
boost-wave x86_64 1.83.0-8.fc41 copr_base 639.8 KiB
cairo x86_64 1.18.0-4.fc41 fedora 1.7 MiB
cmake-data noarch 3.28.3-7.fc41 fedora 8.0 MiB
cmake-filesystem x86_64 3.28.3-7.fc41 fedora 0.0 B
cmake-rpm-macros noarch 3.28.3-7.fc41 fedora 7.5 KiB
cpp x86_64 14.2.1-1.fc41 fedora 35.0 MiB
default-fonts-core-sans noarch 4.1-2.fc41 fedora 11.9 KiB
dejavu-sans-fonts noarch 2.37-24.fc41 fedora 5.5 MiB
emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B
expat x86_64 2.6.2-2.fc41 fedora 284.8 KiB
flexiblas x86_64 3.4.4-3.fc41 fedora 48.5 KiB
flexiblas-netlib x86_64 3.4.4-3.fc41 fedora 10.7 MiB
flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 fedora 43.3 KiB
fontconfig x86_64 2.15.0-8.fc41 fedora 791.9 KiB
fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B
freeglut x86_64 3.6.0-2.fc41 fedora 471.9 KiB
freetype x86_64 2.13.2-6.fc41 fedora 850.6 KiB
fribidi x86_64 1.0.15-2.fc41 fedora 368.4 KiB
gcc-plugin-annobin x86_64 14.2.1-1.fc41 fedora 61.1 KiB
glib2 x86_64 2.82.0-1.fc41 fedora 14.7 MiB
glibc-devel x86_64 2.40-3.fc41 fedora 35.0 KiB
glibc-headers-x86 noarch 2.40-3.fc41 fedora 2.2 MiB
gnutls x86_64 3.8.6-7.fc41 fedora 3.2 MiB
google-noto-fonts-common noarch 20240701-2.fc41 fedora 17.5 KiB
google-noto-sans-vf-fonts noarch 20240701-2.fc41 fedora 1.2 MiB
graphite2 x86_64 1.3.14-16.fc41 fedora 192.0 KiB
groff-base x86_64 1.23.0-7.fc41 fedora 3.8 MiB
harfbuzz x86_64 9.0.0-3.fc41 fedora 2.6 MiB
hwdata noarch 0.385-1.fc41 fedora 9.2 MiB
jbigkit-libs x86_64 2.1-30.fc41 fedora 117.6 KiB
jsoncpp x86_64 1.9.5-8.fc41 fedora 253.4 KiB
kernel-headers x86_64 6.11.0-0.rc5.43.fc41 fedora 6.4 MiB
lcms2 x86_64 2.16-4.fc41 fedora 424.9 KiB
libICE x86_64 1.1.1-4.fc41 fedora 181.2 KiB
libICE-devel x86_64 1.1.1-4.fc41 fedora 261.8 KiB
libSM x86_64 1.2.4-4.fc41 fedora 97.3 KiB
libSM-devel x86_64 1.2.4-4.fc41 fedora 18.8 KiB
libX11 x86_64 1.8.10-2.fc41 fedora 1.3 MiB
libX11-common noarch 1.8.10-2.fc41 fedora 1.1 MiB
libX11-devel x86_64 1.8.10-2.fc41 fedora 1.0 MiB
libX11-xcb x86_64 1.8.10-2.fc41 fedora 15.0 KiB
libXau x86_64 1.0.11-7.fc41 fedora 66.9 KiB
libXau-devel x86_64 1.0.11-7.fc41 fedora 6.4 KiB
libXdmcp x86_64 1.1.5-2.fc41 fedora 82.3 KiB
libXext x86_64 1.3.6-2.fc41 fedora 90.1 KiB
libXext-devel x86_64 1.3.6-2.fc41 fedora 98.9 KiB
libXfixes x86_64 6.0.1-4.fc41 fedora 30.3 KiB
libXfixes-devel x86_64 6.0.1-4.fc41 fedora 9.2 KiB
libXfont2 x86_64 2.0.7-1.fc41 fedora 338.7 KiB
libXft x86_64 2.3.8-7.fc41 fedora 164.5 KiB
libXi x86_64 1.8.1-6.fc41 fedora 80.7 KiB
libXmu x86_64 1.2.1-2.fc41 fedora 191.5 KiB
libXrender x86_64 0.9.11-7.fc41 fedora 50.1 KiB
libXt x86_64 1.3.0-4.fc41 fedora 429.9 KiB
libXt-devel x86_64 1.3.0-4.fc41 fedora 1.6 MiB
libXxf86vm x86_64 1.1.5-7.fc41 fedora 25.4 KiB
libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB
libdrm x86_64 2.4.123-1.fc41 fedora 400.1 KiB
libdrm-devel x86_64 2.4.123-1.fc41 fedora 708.5 KiB
libedit x86_64 3.1-53.20240808cvs.fc41 fedora 244.1 KiB
libfontenc x86_64 1.1.8-2.fc41 fedora 67.0 KiB
libgfortran x86_64 14.2.1-1.fc41 fedora 3.0 MiB
libglvnd x86_64 1:1.7.0-5.fc41 fedora 530.2 KiB
libglvnd-core-devel x86_64 1:1.7.0-5.fc41 fedora 40.3 KiB
libglvnd-egl x86_64 1:1.7.0-5.fc41 fedora 68.8 KiB
libglvnd-gles x86_64 1:1.7.0-5.fc41 fedora 106.2 KiB
libglvnd-glx x86_64 1:1.7.0-5.fc41 fedora 605.5 KiB
libglvnd-opengl x86_64 1:1.7.0-5.fc41 fedora 148.8 KiB
libicu x86_64 74.2-2.fc41 fedora 34.9 MiB
libicu-devel x86_64 74.2-2.fc41 fedora 5.6 MiB
libimagequant x86_64 4.0.3-5.fc41 fedora 666.7 KiB
libjpeg-turbo x86_64 3.0.2-3.fc41 fedora 776.9 KiB
libjpeg-turbo-devel x86_64 3.0.2-3.fc41 fedora 352.9 KiB
liblerc x86_64 4.0.0-7.fc41 fedora 607.5 KiB
libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB
libpciaccess x86_64 0.16-13.fc41 fedora 44.6 KiB
libpciaccess-devel x86_64 0.16-13.fc41 fedora 15.3 KiB
libpng x86_64 2:1.6.40-4.fc41 fedora 245.8 KiB
libqhull_r x86_64 1:8.0.2-5.fc41 fedora 483.4 KiB
libquadmath x86_64 14.2.1-1.fc41 fedora 325.9 KiB
libquadmath-devel x86_64 14.2.1-1.fc41 fedora 21.8 KiB
libraqm x86_64 0.8.0-8.fc41 fedora 28.6 KiB
libstdc++-devel x86_64 14.2.1-1.fc41 fedora 15.4 MiB
libtiff x86_64 4.6.0-6.fc41 fedora 606.0 KiB
libunwind x86_64 1.8.0-4.fc41 fedora 178.9 KiB
libuuid-devel x86_64 2.40.2-8.fc41 copr_base 40.9 KiB
libuv x86_64 1:1.48.0-2.fc41 fedora 546.8 KiB
libwayland-client x86_64 1.23.0-2.fc41 fedora 62.1 KiB
libwayland-server x86_64 1.23.0-2.fc41 fedora 78.6 KiB
libwebp x86_64 1.4.0-4.fc41 fedora 822.6 KiB
libwebp-devel x86_64 1.4.0-4.fc41 fedora 120.3 KiB
libxcb x86_64 1.17.0-2.fc41 fedora 1.1 MiB
libxcb-devel x86_64 1.17.0-2.fc41 fedora 2.7 MiB
libxcrypt-devel x86_64 4.4.36-7.fc41 fedora 30.3 KiB
libxkbfile x86_64 1.1.3-2.fc41 fedora 202.0 KiB
libxshmfence x86_64 1.3.2-4.fc41 fedora 15.4 KiB
libxslt x86_64 1.1.42-2.fc41 fedora 483.1 KiB
libzstd-devel x86_64 1.5.6-2.fc41 fedora 202.4 KiB
llvm-libs x86_64 18.1.8-2.fc41 fedora 113.5 MiB
lm_sensors-libs x86_64 3.6.0-20.fc41 fedora 85.9 KiB
mesa-dri-drivers x86_64 24.2.0-2.fc41 fedora 141.9 MiB
mesa-filesystem x86_64 24.2.0-2.fc41 fedora 3.6 KiB
mesa-libEGL x86_64 24.2.0-2.fc41 fedora 340.2 KiB
mesa-libGL x86_64 24.2.0-2.fc41 fedora 457.7 KiB
mesa-libGL-devel x86_64 24.2.0-2.fc41 fedora 80.9 KiB
mesa-libGLU x86_64 9.0.3-5.fc41 fedora 357.8 KiB
mesa-libGLU-devel x86_64 9.0.3-5.fc41 fedora 17.0 KiB
mesa-libgbm x86_64 24.2.0-2.fc41 fedora 69.3 KiB
mesa-libglapi x86_64 24.2.0-2.fc41 fedora 172.5 KiB
mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB
ncurses x86_64 6.5-2.20240629.fc41 fedora 627.3 KiB
nettle x86_64 3.10-3.fc41 fedora 793.0 KiB
openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB
openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB
openjpeg x86_64 2.5.2-3.fc41 fedora 445.7 KiB
perl-AutoLoader noarch 5.74-511.fc41 fedora 20.5 KiB
perl-B x86_64 1.89-511.fc41 fedora 498.0 KiB
perl-Carp noarch 1.54-511.fc41 fedora 46.6 KiB
perl-Class-Struct noarch 0.68-511.fc41 fedora 25.4 KiB
perl-Data-Dumper x86_64 2.189-512.fc41 fedora 111.7 KiB
perl-Digest noarch 1.20-511.fc41 fedora 35.3 KiB
perl-Digest-MD5 x86_64 2.59-5.fc41 fedora 59.8 KiB
perl-DynaLoader x86_64 1.56-511.fc41 fedora 32.1 KiB
perl-Encode x86_64 4:3.21-511.fc41 fedora 4.7 MiB
perl-Errno x86_64 1.38-511.fc41 fedora 8.4 KiB
perl-Exporter noarch 5.78-511.fc41 fedora 54.3 KiB
perl-Fcntl x86_64 1.18-511.fc41 fedora 49.0 KiB
perl-File-Basename noarch 2.86-511.fc41 fedora 14.0 KiB
perl-File-Path noarch 2.18-511.fc41 fedora 63.5 KiB
perl-File-Temp noarch 1:0.231.100-511.fc41 fedora 162.3 KiB
perl-File-stat noarch 1.14-511.fc41 fedora 12.5 KiB
perl-FileHandle noarch 2.05-511.fc41 fedora 9.3 KiB
perl-Getopt-Long noarch 1:2.58-2.fc41 fedora 144.5 KiB
perl-Getopt-Std noarch 1.14-511.fc41 fedora 11.2 KiB
perl-HTTP-Tiny noarch 0.088-512.fc41 fedora 152.2 KiB
perl-IO x86_64 1.55-511.fc41 fedora 151.1 KiB
perl-IO-Socket-IP noarch 0.42-512.fc41 fedora 98.7 KiB
perl-IO-Socket-SSL noarch 2.088-2.fc41 fedora 701.1 KiB
perl-IPC-Open3 noarch 1.22-511.fc41 fedora 22.5 KiB
perl-MIME-Base64 x86_64 3.16-511.fc41 fedora 46.1 KiB
perl-Mozilla-CA noarch 20240730-1.fc41 fedora 9.8 KiB
perl-Net-SSLeay x86_64 1.94-7.fc41 fedora 1.3 MiB
perl-POSIX x86_64 2.20-511.fc41 fedora 235.1 KiB
perl-PathTools x86_64 3.91-511.fc41 fedora 180.0 KiB
perl-Pod-Escapes noarch 1:1.07-511.fc41 fedora 24.9 KiB
perl-Pod-Perldoc noarch 3.28.01-512.fc41 fedora 163.7 KiB
perl-Pod-Simple noarch 1:3.45-511.fc41 fedora 560.9 KiB
perl-Pod-Usage noarch 4:2.03-511.fc41 fedora 84.8 KiB
perl-Scalar-List-Utils x86_64 5:1.65-1.fc41 fedora 146.5 KiB
perl-SelectSaver noarch 1.02-511.fc41 fedora 2.2 KiB
perl-Socket x86_64 4:2.038-511.fc41 fedora 124.0 KiB
perl-Storable x86_64 1:3.32-511.fc41 fedora 232.4 KiB
perl-Symbol noarch 1.09-511.fc41 fedora 6.8 KiB
perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB
perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB
perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB
perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB
perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB
perl-URI noarch 5.28-2.fc41 fedora 240.7 KiB
perl-base noarch 2.27-511.fc41 fedora 12.5 KiB
perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB
perl-if noarch 0.61.000-511.fc41 fedora 5.8 KiB
perl-interpreter x86_64 4:5.40.0-511.fc41 fedora 122.3 KiB
perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB
perl-libs x86_64 4:5.40.0-511.fc41 fedora 9.9 MiB
perl-locale noarch 1.12-511.fc41 fedora 6.5 KiB
perl-mro x86_64 1.29-511.fc41 fedora 45.6 KiB
perl-overload noarch 1.37-511.fc41 fedora 71.5 KiB
perl-overloading noarch 0.02-511.fc41 fedora 4.8 KiB
perl-parent noarch 1:0.242-1.fc41 fedora 10.0 KiB
perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB
perl-vars noarch 1.05-511.fc41 fedora 3.9 KiB
pixman x86_64 0.43.4-2.fc41 fedora 718.1 KiB
pyproject-rpm-macros noarch 1.14.0-1.fc41 fedora 105.7 KiB
python-pip-wheel noarch 24.2-1.fc41 copr_base 1.2 MiB
python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB
python3 x86_64 3.13.0~rc1-2.fc41 fedora 31.8 KiB
python3-appdirs noarch 1.4.4-23.fc41 fedora 68.7 KiB
python3-brotli x86_64 1.1.0-5.fc41 fedora 836.0 KiB
python3-cairo x86_64 1.25.1-5.fc41 fedora 492.5 KiB
python3-charset-normalizer noarch 3.3.2-6.fc41 copr_base 314.8 KiB
python3-contourpy x86_64 1.2.1-4.fc41 fedora 790.5 KiB
python3-cycler noarch 0.11.0-14.fc41 copr_base 37.6 KiB
python3-dateutil noarch 1:2.8.2-16.fc41 fedora 879.2 KiB
python3-fonttools x86_64 4.53.1-2.fc41 copr_base 18.2 MiB
python3-fs noarch 2.4.16-9.fc41 fedora 1.3 MiB
python3-idna noarch 3.8-1.fc41 copr_base 596.4 KiB
python3-kiwisolver x86_64 1.4.7-1.fc41 copr_base 153.9 KiB
python3-libs x86_64 3.13.0~rc1-2.fc41 fedora 40.3 MiB
python3-lxml x86_64 5.2.1-6.fc41 fedora 4.9 MiB
python3-matplotlib-data noarch 3.9.1-2.fc41 fedora 741.5 KiB
python3-matplotlib-data-fonts noarch 3.9.1-2.fc41 fedora 7.9 MiB
python3-matplotlib-tk x86_64 3.9.1-2.fc41 fedora 262.7 KiB
python3-numpy x86_64 1:1.26.4-8.fc41 fedora 43.8 MiB
python3-numpy-f2py x86_64 1:1.26.4-8.fc41 fedora 2.8 MiB
python3-olefile noarch 0.47-5.fc41 fedora 340.4 KiB
python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB
python3-pillow x86_64 10.4.0-2.fc41 fedora 3.7 MiB
python3-pillow-tk x86_64 10.4.0-2.fc41 fedora 68.4 KiB
python3-platformdirs noarch 4.2.2-2.fc41 fedora 168.6 KiB
python3-pooch noarch 1.8.2-3.fc41 fedora 625.5 KiB
python3-pyparsing noarch 3.1.2-7.fc41 fedora 1.0 MiB
python3-requests noarch 2.32.3-3.fc41 fedora 485.9 KiB
python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB
python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB
python3-scipy x86_64 1.11.3-15.fc41 fedora 62.5 MiB
python3-six noarch 1.16.0-24.fc41 copr_base 118.3 KiB
python3-tkinter x86_64 3.13.0~rc1-2.fc41 fedora 2.0 MiB
python3-urllib3 noarch 1.26.19-2.fc41 fedora 1.0 MiB
rhash x86_64 1.4.4-2.fc41 fedora 349.9 KiB
tcl x86_64 1:8.6.14-2.fc41 fedora 4.2 MiB
tk x86_64 1:8.6.14-2.fc41 fedora 3.6 MiB
tzdata noarch 2024a-9.fc41 fedora 1.7 MiB
vim-filesystem noarch 2:9.1.660-2.fc41 fedora 40.0 B
xkbcomp x86_64 1.4.7-2.fc41 fedora 217.4 KiB
xkeyboard-config noarch 2.42-2.fc41 fedora 6.5 MiB
xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB
xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB
xorg-x11-server-common x86_64 1.20.14-37.fc41 fedora 127.3 KiB
xorg-x11-xauth x86_64 1:1.1.3-2.fc41 fedora 56.2 KiB
Transaction Summary:
Installing: 271 packages
Total size of inbound packages is 263 MiB. Need to download 196 MiB.
After this operation 1 GiB will be used (install 1 GiB, remove 0 B).
[ 1/271] gcc-0:14.2.1-1.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 3/271] python3-devel-0:3.13.0~rc1-2. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 10/271] python3-packaging-0:24.1-2.fc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 16/271] annobin-plugin-gcc-0:12.69-1. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 18/271] annobin-docs-0:12.69-1.fc41.n 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 19/271] pyproject-rpm-macros-0:1.14.0 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 21/271] python3-rpm-macros-0:3.13-3.f 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 22/271] python-pip-wheel-0:24.2-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 24/271] glibc-devel-0:2.40-3.fc41.x86 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 25/271] glibc-headers-x86-0:2.40-3.fc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 26/271] libxcrypt-devel-0:4.4.36-7.fc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 27/271] kernel-headers-0:6.11.0-0.rc5 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 28/271] perl-macros-4:5.40.0-511.fc41 100% | 945.7 KiB/s | 12.3 KiB | 00m00s
[ 29/271] xorg-x11-server-Xvfb-0:1.20.1 100% | 47.9 MiB/s | 883.5 KiB | 00m00s
[ 30/271] freeglut-devel-0:3.6.0-2.fc41 100% | 65.9 MiB/s | 944.5 KiB | 00m00s
[ 31/271] gcc-c++-0:14.2.1-1.fc41.x86_6 100% | 289.3 MiB/s | 14.2 MiB | 00m00s
[ 32/271] cmake-0:3.28.3-7.fc41.x86_64 100% | 121.9 MiB/s | 9.8 MiB | 00m00s
[ 33/271] libXi-devel-0:1.8.1-6.fc41.x8 100% | 9.4 MiB/s | 115.9 KiB | 00m00s
[ 34/271] libglvnd-devel-1:1.7.0-5.fc41 100% | 39.6 MiB/s | 162.0 KiB | 00m00s
[ 35/271] libXmu-devel-0:1.2.1-2.fc41.x 100% | 5.3 MiB/s | 27.2 KiB | 00m00s
[ 36/271] libtiff-devel-0:4.6.0-6.fc41. 100% | 84.1 MiB/s | 258.2 KiB | 00m00s
[ 37/271] pybind11-devel-0:2.13.1-3.fc4 100% | 35.7 MiB/s | 183.0 KiB | 00m00s
[ 38/271] python3-flaky-0:3.8.1-3.fc41. 100% | 3.0 MiB/s | 45.7 KiB | 00m00s
[ 39/271] python3-wheel-1:0.43.0-4.fc41 100% | 54.0 MiB/s | 165.8 KiB | 00m00s
[ 40/271] zlib-ng-compat-devel-0:2.1.7- 100% | 37.2 MiB/s | 38.1 KiB | 00m00s
[ 41/271] python3-matplotlib-0:3.9.1-2. 100% | 185.9 MiB/s | 4.6 MiB | 00m00s
[ 42/271] perl-interpreter-4:5.40.0-511 100% | 11.8 MiB/s | 72.3 KiB | 00m00s
[ 43/271] libXau-0:1.0.11-7.fc41.x86_64 100% | 31.1 MiB/s | 31.9 KiB | 00m00s
[ 44/271] libXdmcp-0:1.1.5-2.fc41.x86_6 100% | 18.2 MiB/s | 37.2 KiB | 00m00s
[ 45/271] libXfont2-0:2.0.7-1.fc41.x86_ 100% | 48.5 MiB/s | 149.0 KiB | 00m00s
[ 46/271] libglvnd-glx-1:1.7.0-5.fc41.x 100% | 42.1 MiB/s | 129.2 KiB | 00m00s
[ 47/271] pixman-0:0.43.4-2.fc41.x86_64 100% | 287.2 MiB/s | 294.1 KiB | 00m00s
[ 48/271] libunwind-0:1.8.0-4.fc41.x86_ 100% | 23.6 MiB/s | 72.6 KiB | 00m00s
[ 49/271] xorg-x11-server-common-0:1.20 100% | 11.7 MiB/s | 36.0 KiB | 00m00s
[ 50/271] xorg-x11-xauth-1:1.1.3-2.fc41 100% | 16.6 MiB/s | 34.0 KiB | 00m00s
[ 51/271] libicu-devel-0:74.2-2.fc41.x8 100% | 302.1 MiB/s | 928.2 KiB | 00m00s
[ 52/271] libquadmath-devel-0:14.2.1-1. 100% | 14.1 MiB/s | 43.2 KiB | 00m00s
[ 53/271] jsoncpp-0:1.9.5-8.fc41.x86_64 100% | 32.3 MiB/s | 99.3 KiB | 00m00s
[ 54/271] libuv-1:1.48.0-2.fc41.x86_64 100% | 41.7 MiB/s | 256.1 KiB | 00m00s
[ 55/271] cmake-data-0:3.28.3-7.fc41.no 100% | 151.1 MiB/s | 2.3 MiB | 00m00s
[ 56/271] rhash-0:1.4.4-2.fc41.x86_64 100% | 31.9 MiB/s | 196.0 KiB | 00m00s
[ 57/271] libXi-0:1.8.1-6.fc41.x86_64 100% | 19.5 MiB/s | 39.9 KiB | 00m00s
[ 58/271] xorg-x11-proto-devel-0:2024.1 100% | 58.6 MiB/s | 300.3 KiB | 00m00s
[ 59/271] freeglut-0:3.6.0-2.fc41.x86_6 100% | 15.9 MiB/s | 146.8 KiB | 00m00s
[ 60/271] libXmu-0:1.2.1-2.fc41.x86_64 100% | 15.2 MiB/s | 78.0 KiB | 00m00s
[ 61/271] libX11-devel-0:1.8.10-2.fc41. 100% | 127.3 MiB/s | 1.0 MiB | 00m00s
[ 62/271] libglvnd-1:1.7.0-5.fc41.x86_6 100% | 18.6 MiB/s | 114.4 KiB | 00m00s
[ 63/271] libglvnd-core-devel-1:1.7.0-5 100% | 8.6 MiB/s | 17.5 KiB | 00m00s
[ 64/271] libglvnd-egl-1:1.7.0-5.fc41.x 100% | 17.4 MiB/s | 35.5 KiB | 00m00s
[ 65/271] libglvnd-gles-1:1.7.0-5.fc41. 100% | 14.3 MiB/s | 29.3 KiB | 00m00s
[ 66/271] libtiff-0:4.6.0-6.fc41.x86_64 100% | 103.5 MiB/s | 212.0 KiB | 00m00s
[ 67/271] libglvnd-opengl-1:1.7.0-5.fc4 100% | 18.3 MiB/s | 37.4 KiB | 00m00s
[ 68/271] boost-devel-0:1.83.0-8.fc41.x 100% | 58.7 MiB/s | 11.7 MiB | 00m00s
[ 69/271] freetype-0:2.13.2-6.fc41.x86_ 100% | 36.5 MiB/s | 410.7 KiB | 00m00s
[ 70/271] dejavu-sans-fonts-0:2.37-24.f 100% | 102.0 MiB/s | 1.3 MiB | 00m00s
[ 71/271] libqhull_r-1:8.0.2-5.fc41.x86 100% | 49.3 MiB/s | 201.8 KiB | 00m00s
[ 72/271] python3-contourpy-0:1.2.1-4.f 100% | 65.9 MiB/s | 270.1 KiB | 00m00s
[ 73/271] python3-matplotlib-tk-0:3.9.1 100% | 36.3 MiB/s | 111.6 KiB | 00m00s
[ 74/271] python3-dateutil-1:2.8.2-16.f 100% | 50.2 MiB/s | 359.7 KiB | 00m00s
[ 75/271] python3-matplotlib-data-0:3.9 100% | 85.4 MiB/s | 524.7 KiB | 00m00s
[ 76/271] python3-pyparsing-0:3.1.2-7.f 100% | 45.1 MiB/s | 277.4 KiB | 00m00s
[ 77/271] libfontenc-0:1.1.8-2.fc41.x86 100% | 10.6 MiB/s | 32.6 KiB | 00m00s
[ 78/271] libX11-0:1.8.10-2.fc41.x86_64 100% | 105.8 MiB/s | 649.9 KiB | 00m00s
[ 79/271] libXext-0:1.3.6-2.fc41.x86_64 100% | 6.4 MiB/s | 39.1 KiB | 00m00s
[ 80/271] perl-libs-4:5.40.0-511.fc41.x 100% | 77.7 MiB/s | 2.3 MiB | 00m00s
[ 81/271] mesa-libGL-0:24.2.0-2.fc41.x8 100% | 21.5 MiB/s | 176.3 KiB | 00m00s
[ 82/271] python3-numpy-1:1.26.4-8.fc41 100% | 115.5 MiB/s | 7.6 MiB | 00m00s
[ 83/271] xkeyboard-config-0:2.42-2.fc4 100% | 27.9 MiB/s | 972.3 KiB | 00m00s
[ 84/271] emacs-filesystem-1:30.0-3.fc4 100% | 2.3 MiB/s | 7.1 KiB | 00m00s
[ 85/271] libicu-0:74.2-2.fc41.x86_64 100% | 236.1 MiB/s | 10.4 MiB | 00m00s
[ 86/271] vim-filesystem-2:9.1.660-2.fc 100% | 1.5 MiB/s | 17.0 KiB | 00m00s
[ 87/271] libXt-0:1.3.0-4.fc41.x86_64 100% | 19.3 MiB/s | 177.4 KiB | 00m00s
[ 88/271] libX11-xcb-0:1.8.10-2.fc41.x8 100% | 11.6 MiB/s | 11.9 KiB | 00m00s
[ 89/271] jbigkit-libs-0:2.1-30.fc41.x8 100% | 52.1 MiB/s | 53.3 KiB | 00m00s
[ 90/271] libjpeg-turbo-0:3.0.2-3.fc41. 100% | 222.0 MiB/s | 227.3 KiB | 00m00s
[ 91/271] liblerc-0:4.0.0-7.fc41.x86_64 100% | 102.7 MiB/s | 210.3 KiB | 00m00s
[ 92/271] mesa-libEGL-0:24.2.0-2.fc41.x 100% | 35.2 MiB/s | 144.3 KiB | 00m00s
[ 93/271] libwebp-0:1.4.0-4.fc41.x86_64 100% | 95.0 MiB/s | 292.0 KiB | 00m00s
[ 94/271] fonts-filesystem-1:2.0.5-17.f 100% | 4.1 MiB/s | 8.5 KiB | 00m00s
[ 95/271] harfbuzz-0:9.0.0-3.fc41.x86_6 100% | 251.5 MiB/s | 1.0 MiB | 00m00s
[ 96/271] libpng-2:1.6.40-4.fc41.x86_64 100% | 39.2 MiB/s | 120.3 KiB | 00m00s
[ 97/271] python3-pillow-tk-0:10.4.0-2. 100% | 4.9 MiB/s | 30.3 KiB | 00m00s
[ 98/271] flexiblas-netlib-0:3.4.4-3.fc 100% | 321.8 MiB/s | 3.2 MiB | 00m00s
[ 99/271] perl-Carp-0:1.54-511.fc41.noa 100% | 3.5 MiB/s | 28.9 KiB | 00m00s
[100/271] python3-matplotlib-data-fonts 100% | 106.4 MiB/s | 2.3 MiB | 00m00s
[101/271] perl-DynaLoader-0:1.56-511.fc 100% | 3.6 MiB/s | 26.0 KiB | 00m00s
[102/271] perl-Exporter-0:5.78-511.fc41 100% | 7.5 MiB/s | 30.9 KiB | 00m00s
[103/271] libX11-common-0:1.8.10-2.fc41 100% | 171.7 MiB/s | 175.8 KiB | 00m00s
[104/271] libxcb-0:1.17.0-2.fc41.x86_64 100% | 116.7 MiB/s | 239.0 KiB | 00m00s
[105/271] perl-PathTools-0:3.91-511.fc4 100% | 21.3 MiB/s | 87.4 KiB | 00m00s
[106/271] libXfixes-0:6.0.1-4.fc41.x86_ 100% | 9.4 MiB/s | 19.2 KiB | 00m00s
[107/271] libXxf86vm-0:1.1.5-7.fc41.x86 100% | 5.8 MiB/s | 17.9 KiB | 00m00s
[108/271] libxshmfence-0:1.3.2-4.fc41.x 100% | 5.9 MiB/s | 12.2 KiB | 00m00s
[109/271] libdrm-0:2.4.123-1.fc41.x86_6 100% | 30.9 MiB/s | 158.3 KiB | 00m00s
[110/271] mesa-libglapi-0:24.2.0-2.fc41 100% | 12.4 MiB/s | 51.0 KiB | 00m00s
[111/271] libICE-0:1.1.1-4.fc41.x86_64 100% | 24.3 MiB/s | 74.7 KiB | 00m00s
[112/271] libSM-0:1.2.4-4.fc41.x86_64 100% | 21.1 MiB/s | 43.2 KiB | 00m00s
[113/271] libwayland-client-0:1.23.0-2. 100% | 6.5 MiB/s | 33.3 KiB | 00m00s
[114/271] libwayland-server-0:1.23.0-2. 100% | 8.0 MiB/s | 41.1 KiB | 00m00s
[115/271] glib2-0:2.82.0-1.fc41.x86_64 100% | 277.1 MiB/s | 3.0 MiB | 00m00s
[116/271] mesa-libgbm-0:24.2.0-2.fc41.x 100% | 3.6 MiB/s | 47.9 KiB | 00m00s
[117/271] graphite2-0:1.3.14-16.fc41.x8 100% | 46.5 MiB/s | 95.1 KiB | 00m00s
[118/271] flexiblas-0:3.4.4-3.fc41.x86_ 100% | 8.2 MiB/s | 25.3 KiB | 00m00s
[119/271] flexiblas-openblas-openmp-0:3 100% | 4.2 MiB/s | 17.2 KiB | 00m00s
[120/271] libgfortran-0:14.2.1-1.fc41.x 100% | 183.2 MiB/s | 938.2 KiB | 00m00s
[121/271] libquadmath-0:14.2.1-1.fc41.x 100% | 65.6 MiB/s | 201.5 KiB | 00m00s
[122/271] perl-vars-0:1.05-511.fc41.noa 100% | 2.1 MiB/s | 13.0 KiB | 00m00s
[123/271] perl-Errno-0:1.38-511.fc41.x8 100% | 4.9 MiB/s | 14.9 KiB | 00m00s
[124/271] perl-Scalar-List-Utils-5:1.65 100% | 23.5 MiB/s | 72.1 KiB | 00m00s
[125/271] perl-constant-0:1.33-512.fc41 100% | 7.5 MiB/s | 23.0 KiB | 00m00s
[126/271] libpciaccess-0:0.16-13.fc41.x 100% | 6.5 MiB/s | 26.5 KiB | 00m00s
[127/271] lm_sensors-libs-0:3.6.0-20.fc 100% | 13.2 MiB/s | 40.7 KiB | 00m00s
[128/271] python3-pillow-0:10.4.0-2.fc4 100% | 20.5 MiB/s | 987.3 KiB | 00m00s
[129/271] mesa-filesystem-0:24.2.0-2.fc 100% | 6.8 MiB/s | 20.8 KiB | 00m00s
[130/271] gnutls-0:3.8.6-7.fc41.x86_64 100% | 277.5 MiB/s | 1.1 MiB | 00m00s
[131/271] lcms2-0:2.16-4.fc41.x86_64 100% | 29.3 MiB/s | 180.3 KiB | 00m00s
[132/271] libraqm-0:0.8.0-8.fc41.x86_64 100% | 3.2 MiB/s | 19.9 KiB | 00m00s
[133/271] libimagequant-0:4.0.3-5.fc41. 100% | 24.5 MiB/s | 301.2 KiB | 00m00s
[134/271] openjpeg-0:2.5.2-3.fc41.x86_6 100% | 26.1 MiB/s | 186.8 KiB | 00m00s
[135/271] python3-olefile-0:0.47-5.fc41 100% | 14.6 MiB/s | 74.6 KiB | 00m00s
[136/271] openblas-openmp-0:0.3.26-5.fc 100% | 241.1 MiB/s | 5.1 MiB | 00m00s
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[ 51/273] Installing boost-graph-0:1.83 100% | 339.2 MiB/s | 347.3 KiB | 00m00s
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[ 53/273] Installing libXau-devel-0:1.0 100% | 1.6 MiB/s | 8.2 KiB | 00m00s
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[ 55/273] Installing dejavu-sans-fonts- 100% | 459.1 MiB/s | 5.5 MiB | 00m00s
[ 56/273] Installing abattis-cantarell- 100% | 94.9 MiB/s | 194.4 KiB | 00m00s
[ 57/273] Installing libicu-devel-0:74. 100% | 352.6 MiB/s | 5.6 MiB | 00m00s
[ 58/273] Installing boost-locale-0:1.8 100% | 296.5 MiB/s | 607.2 KiB | 00m00s
[ 59/273] Installing boost-type_erasure 100% | 0.0 B/s | 59.2 KiB | 00m00s
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[ 61/273] Installing zlib-ng-compat-dev 100% | 0.0 B/s | 108.3 KiB | 00m00s
[ 62/273] Installing libedit-0:3.1-53.2 100% | 240.0 MiB/s | 245.8 KiB | 00m00s
[ 63/273] Installing llvm-libs-0:18.1.8 100% | 491.2 MiB/s | 113.5 MiB | 00m00s
[ 64/273] Installing glibc-headers-x86- 100% | 228.6 MiB/s | 2.3 MiB | 00m00s
[ 65/273] Installing libxcrypt-devel-0: 100% | 31.8 MiB/s | 32.6 KiB | 00m00s
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[ 67/273] Installing gcc-0:14.2.1-1.fc4 100% | 475.7 MiB/s | 104.2 MiB | 00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
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[ 69/273] Installing libstdc++-devel-0: 100% | 432.0 MiB/s | 15.6 MiB | 00m00s
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[ 71/273] Installing openblas-0:0.3.26- 100% | 0.0 B/s | 97.8 KiB | 00m00s
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[ 73/273] Installing flexiblas-0:3.4.4- 100% | 0.0 B/s | 49.7 KiB | 00m00s
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[ 76/273] Installing ncurses-0:6.5-2.20 100% | 77.4 MiB/s | 633.9 KiB | 00m00s
>>> Running pre-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64
>>> Stop pre-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64
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>>> Running post-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64
>>> Stop post-install scriptlet: groff-base-0:1.23.0-7.fc41.x86_64
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[101/273] Installing perl-POSIX-0:2.20- 100% | 230.8 MiB/s | 236.4 KiB | 00m00s
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[120/273] Installing perl-constant-0:1. 100% | 0.0 B/s | 27.4 KiB | 00m00s
[121/273] Installing perl-File-Basename 100% | 0.0 B/s | 14.6 KiB | 00m00s
[122/273] Installing perl-Getopt-Std-0: 100% | 0.0 B/s | 11.7 KiB | 00m00s
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[125/273] Installing perl-overload-0:1. 100% | 0.0 B/s | 71.9 KiB | 00m00s
[126/273] Installing perl-Storable-1:3. 100% | 228.5 MiB/s | 234.0 KiB | 00m00s
[127/273] Installing perl-Getopt-Long-1 100% | 143.8 MiB/s | 147.2 KiB | 00m00s
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[129/273] Installing perl-Exporter-0:5. 100% | 0.0 B/s | 55.6 KiB | 00m00s
[130/273] Installing perl-DynaLoader-0: 100% | 0.0 B/s | 32.5 KiB | 00m00s
[131/273] Installing perl-PathTools-0:3 100% | 180.2 MiB/s | 184.6 KiB | 00m00s
[132/273] Installing perl-Encode-4:3.21 100% | 393.2 MiB/s | 4.7 MiB | 00m00s
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[135/273] Installing python-pip-wheel-0 100% | 620.8 MiB/s | 1.2 MiB | 00m00s
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[139/273] Installing boost-serializatio 100% | 432.7 MiB/s | 443.1 KiB | 00m00s
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[142/273] Installing boost-nowide-0:1.8 100% | 0.0 B/s | 25.9 KiB | 00m00s
[143/273] Installing boost-math-0:1.83. 100% | 325.3 MiB/s | 666.2 KiB | 00m00s
[144/273] Installing boost-iostreams-0: 100% | 93.5 MiB/s | 95.7 KiB | 00m00s
[145/273] Installing boost-contract-0:1 100% | 101.7 MiB/s | 104.2 KiB | 00m00s
[146/273] Installing annobin-docs-0:12. 100% | 0.0 B/s | 98.8 KiB | 00m00s
[147/273] Installing libuuid-devel-0:2. 100% | 0.0 B/s | 43.8 KiB | 00m00s
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>>> Running pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch
>>> Stop pre-install scriptlet: xml-common-0:0.6.3-65.fc41.noarch
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[163/273] Installing libimagequant-0:4. 100% | 326.3 MiB/s | 668.3 KiB | 00m00s
[164/273] Installing lcms2-0:2.16-4.fc4 100% | 83.3 MiB/s | 426.5 KiB | 00m00s
[165/273] Installing mesa-filesystem-0: 100% | 0.0 B/s | 4.3 KiB | 00m00s
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[171/273] Installing harfbuzz-0:9.0.0-3 100% | 378.6 MiB/s | 2.7 MiB | 00m00s
[172/273] Installing freetype-0:2.13.2- 100% | 277.4 MiB/s | 852.3 KiB | 00m00s
[173/273] Installing fontconfig-0:2.15. 100% | 794.4 KiB/s | 811.1 KiB | 00m01s
>>> Running post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop post-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
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[181/273] Installing libXext-0:1.3.6-2. 100% | 44.6 MiB/s | 91.3 KiB | 00m00s
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[185/273] Installing libXt-0:1.3.0-4.fc 100% | 421.0 MiB/s | 431.1 KiB | 00m00s
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>>> Running pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64
>>> Stop pre-install scriptlet: tk-1:8.6.14-2.fc41.x86_64
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[220/273] Installing python3-setuptools 100% | 305.4 MiB/s | 7.3 MiB | 00m00s
[221/273] Installing python3-pyparsing- 100% | 329.6 MiB/s | 1.0 MiB | 00m00s
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[242/273] Installing emacs-filesystem-1 100% | 531.2 KiB/s | 544.0 B | 00m00s
[243/273] Installing xkeyboard-config-0 100% | 384.7 MiB/s | 6.5 MiB | 00m00s
[244/273] Installing xorg-x11-server-co 100% | 0.0 B/s | 128.2 KiB | 00m00s
[245/273] Installing libfontenc-0:1.1.8 100% | 0.0 B/s | 68.4 KiB | 00m00s
[246/273] Installing libXfont2-0:2.0.7- 100% | 332.4 MiB/s | 340.3 KiB | 00m00s
[247/273] Installing libqhull_r-1:8.0.2 100% | 472.9 MiB/s | 484.2 KiB | 00m00s
[248/273] Installing python3-matplotlib 100% | 86.4 MiB/s | 265.3 KiB | 00m00s
[249/273] Installing python3-matplotlib 100% | 395.1 MiB/s | 21.3 MiB | 00m00s
[250/273] Installing libglvnd-core-deve 100% | 0.0 B/s | 41.1 KiB | 00m00s
[251/273] Installing libglvnd-devel-1:1 100% | 530.1 MiB/s | 2.1 MiB | 00m00s
[252/273] Installing mesa-libGL-devel-0 100% | 0.0 B/s | 81.6 KiB | 00m00s
[253/273] Installing mesa-libGLU-devel- 100% | 0.0 B/s | 17.5 KiB | 00m00s
[254/273] Installing rhash-0:1.4.4-2.fc 100% | 173.4 MiB/s | 355.1 KiB | 00m00s
[255/273] Installing libuv-1:1.48.0-2.f 100% | 268.4 MiB/s | 549.6 KiB | 00m00s
[256/273] Installing jsoncpp-0:1.9.5-8. 100% | 35.6 MiB/s | 254.9 KiB | 00m00s
[257/273] Installing cmake-data-0:3.28. 100% | 148.8 MiB/s | 8.5 MiB | 00m00s
[258/273] Installing cmake-0:3.28.3-7.f 100% | 465.4 MiB/s | 31.6 MiB | 00m00s
[259/273] Installing libunwind-0:1.8.0- 100% | 177.3 MiB/s | 181.6 KiB | 00m00s
[260/273] Installing libXdmcp-0:1.1.5-2 100% | 81.9 MiB/s | 83.8 KiB | 00m00s
[261/273] Installing xorg-x11-server-Xv 100% | 386.4 MiB/s | 1.9 MiB | 00m00s
[262/273] Installing pybind11-devel-0:2 100% | 277.9 MiB/s | 853.9 KiB | 00m00s
[263/273] Installing freeglut-devel-0:3 100% | 289.7 MiB/s | 2.3 MiB | 00m00s
[264/273] Installing libtiff-devel-0:4. 100% | 33.5 MiB/s | 720.0 KiB | 00m00s
[265/273] Installing boost-devel-0:1.83 100% | 332.8 MiB/s | 145.8 MiB | 00m00s
[266/273] Installing python3-flaky-0:3. 100% | 132.2 MiB/s | 135.4 KiB | 00m00s
[267/273] Installing python3-wheel-1:0. 100% | 174.2 MiB/s | 535.1 KiB | 00m00s
[268/273] Installing libXmu-devel-0:1.2 100% | 68.6 MiB/s | 70.2 KiB | 00m00s
[269/273] Installing libXi-devel-0:1.8. 100% | 141.2 MiB/s | 144.6 KiB | 00m00s
[270/273] Installing annobin-plugin-gcc 100% | 80.3 MiB/s | 986.7 KiB | 00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
[271/273] Installing perl-macros-4:5.40 100% | 0.0 B/s | 5.8 KiB | 00m00s
[272/273] Installing gcc-c++-0:14.2.1-1 100% | 428.9 MiB/s | 38.2 MiB | 00m00s
warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead
[273/273] Installing gcc-plugin-annobin 100% | 318.2 KiB/s | 62.7 KiB | 00m00s
>>> Running trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:293-1.fc41.noarch
>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.82.0-1.fc41.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.82.0-1.fc41.x86_64
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-8.fc41.x86_64
Warning: skipped PGP checks for 39 packages from repository: copr_base
Complete!
Finish: build setup for smoldyn-2.72-6.fc41.src.rpm
Start: rpmbuild smoldyn-2.72-6.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1725408000
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.M5Es0H
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ test -d /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/rm -rf /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.CZNoDw
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ rm -rf Smoldyn-2.72
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.72.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd Smoldyn-2.72
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (smoldyn-fix_libpaths.patch):
+ echo 'Patch #0 (smoldyn-fix_libpaths.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0
patching file CMakeLists.txt
Patch #1 (smoldyn-freeglut.patch):
+ echo 'Patch #1 (smoldyn-freeglut.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 370 (offset 44 lines).
Patch #2 (smoldyn-create_soname.patch):
+ echo 'Patch #2 (smoldyn-create_soname.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 490 (offset 5 lines).
Hunk #2 succeeded at 522 (offset 52 lines).
+ echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):'
Patch #3 (smoldyn-avoid_automatic_wheel.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0
patching file source/python/CMakeLists.txt
Hunk #1 succeeded at 20 (offset -3 lines).
+ rm -rf source/MSVClibs
+ rm -rf source/pybind11
+ rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake
+ rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen
+ rm -rf source/NextSubVolume/boost_include
+ rm -f 'source/vtk/*'
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.c' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';'
+ sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt
+ cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt
+ cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt
+ find -name '*.pyc' -delete
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Lane39
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.72 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF
-- The CXX compiler identification is GNU 14.2.1
-- The C compiler identification is GNU 14.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Smoldyn version is set to: '2.72'
-- Compiling for Smoldyn: ON
-- Compiling for Libsmoldyn: ON
-- Option to compile Smoldyn for VCell: OFF
-- Option to cross-compile for Windows using MinGW: OFF
-- Option to include NextSubvolume: ON
-- Option to include VTK: OFF
-- Option to compile with static libraries: OFF
-- Option to include OpenGL support: ON
-- Option to include LibTiff: ON
-- Option to include Zlib: ON
-- Option to incude Python module: ON
-- Option to run Libsmoldyn examples: OFF
-- Option to build documentation: OFF
-- Performing Test C_FLAG_EXISTS
-- Performing Test C_FLAG_EXISTS - Success
-- Performing Test CXX_FLAG_EXISTS
-- Performing Test CXX_FLAG_EXISTS - Success
-- [COMPILER] Adding -Wno-unused-parameter
-- Build type: Release
-- Compiling on a Linux computer
-- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
-- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl'
-- Found OpenGL: /usr/lib64/libOpenGL.so
-- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so'
-- Found GLUT: /usr/lib64/libglut.so
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.6.0")
-- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so'
-- Found Zlib: '/usr/include', '/usr/lib64/libz.so'
-- Boost headers found: '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include'
-- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter Development Development.Module Development.Embed
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.13.1")
-- [TEST] Found 15 test scripts
-- Configuring done (1.1s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
LIB_INSTALL_DIR
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
+ /usr/bin/cmake --build redhat-linux-build -j4 --verbose
Change Dir: '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
/usr/bin/cmake -S/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 -B/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build//CMakeFiles/progress.marks
/usr/bin/gmake -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend
/usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/math2.c
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Geometry.c
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/StructuredGrid.cpp
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/List.c
[ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/opengl2.c
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/parse.c
[ 8%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/queue.c
[ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o
[ 11%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Species.cpp
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.c
[ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Rn.c
[ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/RnSort.c
[ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/rxnparam.c
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SimCommand.c
[ 17%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/ReactionEquation.cpp
[ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Sphere.c
[ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c
[ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SurfaceParam.c
[ 22%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Zn.c
[ 23%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.cpp
[ 24%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT.c
[ 25%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Kairos.cpp
[ 27%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Io.cpp
[ 28%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Geometry.cpp
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c: In function ‘strmatheval’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c:1415:9: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation]
1415 | strncpy(expr,expression,STRCHAR);
| ^
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 28%] Built target Steve
[ 29%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/nsvc.cpp
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/usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color="
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gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
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[ 30%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o
[ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c
[ 34%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o
[ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
[ 35%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 37%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c
[ 38%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
[ 39%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
[ 40%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c
[ 41%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c
[ 43%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c
[ 44%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c
[ 45%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c
[ 46%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c
[ 48%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c
[ 49%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
[ 50%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
[ 51%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 53%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o
[ 54%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c
[ 55%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c
[ 56%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c
[ 58%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c
[ 59%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c
[ 60%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c
[ 61%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c
[ 62%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c
[ 64%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c
[ 65%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o
/usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
| ^~ ~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 66%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c
[ 67%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
[ 69%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c
[ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c
[ 71%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c
[ 72%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:27:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes]
20 | class CallbackFunc
| ^~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes]
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes]
[ 74%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
| ^~ ~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 75%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c
[ 76%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o
/usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
[ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o
[ 79%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c
[ 80%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
[ 81%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o
/usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
| ^~ ~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp:15:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes]
20 | class CallbackFunc
| ^~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes]
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes]
[ 82%] Linking CXX shared library libsmoldyn_shared.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.72 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr]
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
137 | class NextSubvolumeMethod
| ^
[ 83%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c
[ 85%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c
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/usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
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[ 88%] Linking CXX static library lib_pysmoldyn.a
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake
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/usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/CallbackFunc.cpp
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/Command.cpp
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/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^
/usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.72 libsmoldyn_shared.so.2 libsmoldyn_shared.so
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[ 96%] Linking CXX executable smoldyn
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.72 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 96%] Built target smoldyn
[ 97%] Linking CXX shared module /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1045:16: warning: type ‘struct simstruct’ violates the C++ One Definition Rule [-Wodr]
1045 | typedef struct simstruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a different type is defined in another translation unit
1045 | typedef struct simstruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1106:19: note: the first difference of corresponding definitions is field ‘callbacks’
1106 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback.
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a type with different number of fields is defined in another translation unit
1045 | typedef struct simstruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr]
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
137 | class NextSubvolumeMethod
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/strip /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 97%] Built target _smoldyn
/usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend
/usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 98%] Generating wheel in /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
[100%] Copying python source tree to binary directory
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py && /usr/bin/python3.13 setup.py bdist_wheel -d /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py/smoldyn
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[100%] Built target copy_python_tree
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-313
creating build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-313/smoldyn
creating build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-313/smoldyn
running build_ext
/usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
Follow the current Python packaging guidelines when building
Python RPM packages.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
********************************************************************************
!!
self.initialize_options()
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn
creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn
running install_egg_info
running egg_info
creating smoldyn.egg-info
writing smoldyn.egg-info/PKG-INFO
writing dependency_links to smoldyn.egg-info/dependency_links.txt
writing requirements to smoldyn.egg-info/requires.txt
writing top-level names to smoldyn.egg-info/top_level.txt
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
reading manifest file 'smoldyn.egg-info/SOURCES.txt'
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.72-py3.13.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/smoldyn-2.72.dist-info/WHEEL
creating '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/smoldyn-2.72-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'smoldyn/__init__.py'
adding 'smoldyn/__main__.py'
adding 'smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so'
adding 'smoldyn/smoldyn.py'
adding 'smoldyn/types.py'
adding 'smoldyn/utils.py'
adding 'smoldyn/biosimulators/__init__.py'
adding 'smoldyn/biosimulators/__main__.py'
adding 'smoldyn/biosimulators/_version.py'
adding 'smoldyn/biosimulators/combine.py'
adding 'smoldyn/biosimulators/data_model.py'
adding 'smoldyn/biosimulators/utils.py'
adding 'smoldyn-2.72.dist-info/METADATA'
adding 'smoldyn-2.72.dist-info/WHEEL'
adding 'smoldyn-2.72.dist-info/top_level.txt'
adding 'smoldyn-2.72.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[100%] Built target wheel
gmake[1]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Knst2E
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ '[' /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
++ dirname /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/smoldyn-2.72-build
+ mkdir /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
+ DESTDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
+ /usr/bin/cmake --install redhat-linux-build
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/bin/smoldyn
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so.2.72
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so.2
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_static.a
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/libsmoldyn.h
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/smoldyn.h
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/smoldynconfigure.h
+ pushd redhat-linux-build/py
~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
+ mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages
+ cp -a smoldyn smoldyn.egg-info /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/
+ popd
~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.72-6.fc41 --unique-debug-suffix -2.72-6.fc41.x86_64 --unique-debug-src-base smoldyn-2.72-6.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.72-6.fc41.x86_64
3558 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/utils.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/types.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/types.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/__main__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/data_model.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/smoldyn.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/combine.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/smoldyn.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/_version.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/__main__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/__init__.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/utils.cpython-313.opt-1.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_static.a: replacing with normalized version
Scanned 31 directories and 119 files,
processed 14 inodes,
14 modified (5 replaced + 9 rewritten),
0 unsupported format, 0 errors
Reading /builddir/build/BUILD/smoldyn-2.72-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.b54rhn
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
+ pushd redhat-linux-build
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64
+ LD_LIBRARY_PATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64
+ export PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages
+ PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages
+ xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:425 Here: 425
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:710 UpdateCTestConfiguration from :/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:437 Here: 437
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CTestCustom.cmake
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CTestCustom.ctest
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:710 UpdateCTestConfiguration from :/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:407 Test project /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:1770 Constructing a list of tests
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_actions
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_api
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_biosimulators
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_concurrent_simulation
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_connect_func
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_connect_var
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_data_in_array
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_data_outputfile
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_getters
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_issue_118
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_libsmoldyn
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_multiple_iterations
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_prd_placement
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_sanity
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2431 Add test: test_sim_from_file
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:2474 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:1821 Done constructing a list of tests
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:1418 Checking test dependency graph...
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:1447 Checking test dependency graph end
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:172 test 2
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:549 Start 2: test_api
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:710
2: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_api.py"
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:718 2: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:726 2: Environment variables:
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 2: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 2: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:830 2: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1009 1/3 Test #2: test_api .........................
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1012 Testing test_api ...
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:268 Passed 0.18 sec
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:172 test 3
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:549 Start 3: test_biosimulators
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:710
3: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_biosimulators.py"
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:718 3: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:726 3: Environment variables:
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 3: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 3: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:830 3: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: ----------------------------------------------------------------------
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3:
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24)
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1009 2/3 Test #3: test_biosimulators ...............
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1012 Testing test_biosimulators ...
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:268 Passed 0.21 sec
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestMultiProcessHandler.cxx:172 test 14
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:549 Start 14: test_sanity
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:710
14: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_sanity.py"
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:718 14: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:726 14: Environment variables:
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 14: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:731 14: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:830 14: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py/smoldyn/__init__.py
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: <smoldyn._smoldyn.simstruct object at 0x7efdc056dc70>
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:39 14: (<ErrorCode.ok: 0>, '')
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1009 3/3 Test #14: test_sanity ......................
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:1012 Testing test_sanity ...
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestRunTest.cxx:268 Passed 0.17 sec
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/cmCTest.cxx:310 Current_Time: Sep 05 02:21 UTC
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:446
The following tests passed:
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:451 test_api
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:451 test_biosimulators
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:451 test_sanity
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:612
100% tests passed, 0 tests failed out of 3
/builddir/build/BUILD/cmake-3.28.3-build/cmake-3.28.3/Source/CTest/cmCTestTestHandler.cxx:628
Total Test time (real) = 0.56 sec
+ popd
+ RPM_EC=0
~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
++ jobs -p
+ exit 0
Processing files: smoldyn-2.72-6.fc41.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.pvSupA
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd Smoldyn-2.72
+ DOCDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/README.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.72-6.fc41 smoldyn(x86-64) = 2.72-6.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-doc-2.72-6.fc41.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.wCPZ4v
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd Smoldyn-2.72
+ DOCDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/BioNetGen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/CMakeLists.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/Doxyfile.in /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/README.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/SmolCrowd /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/SmolEmulate /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/Smoldyn /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/_static /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/build_doxygen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/conf.py /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/doxygen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/examples /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/index.rst /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/libSteve /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/python /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/requirements.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/tikz /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/user /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/wrl2smol /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: smoldyn-doc = 2.72-6.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-libs-2.72-6.fc41.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.qxzv3Y
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd Smoldyn-2.72
+ LICENSEDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/License.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/LICENSE /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.72-6.fc41 smoldyn-libs(x86-64) = 2.72-6.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-libs-devel-2.72-6.fc41.x86_64
Provides: smoldyn-libs-devel = 2.72-6.fc41 smoldyn-libs-devel(x86-64) = 2.72-6.fc41 smoldyn-libs-static = 0:2.72-6.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libsmoldyn_shared.so.2()(64bit)
Processing files: python3-smoldyn-2.72-6.fc41.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Z3S4Uz
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd Smoldyn-2.72
+ LICENSEDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/License.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/LICENSE /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-smoldyn = 2.72-6.fc41 python3-smoldyn = 2.72-6.fc41 python3-smoldyn(x86-64) = 2.72-6.fc41 python3.13-smoldyn = 2.72-6.fc41 python3.13dist(smoldyn) = 2.72 python3dist(smoldyn) = 2.72
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) python(abi) = 3.13 rtld(GNU_HASH)
Obsoletes: python-smoldyn < 2.72-6.fc41
Processing files: smoldyn-debugsource-2.72-6.fc41.x86_64
Provides: smoldyn-debugsource = 2.72-6.fc41 smoldyn-debugsource(x86-64) = 2.72-6.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-debuginfo-2.72-6.fc41.x86_64
Provides: debuginfo(build-id) = 2cf25af1de832dbe4663d25bb44098fc22c4c120 smoldyn-debuginfo = 2.72-6.fc41 smoldyn-debuginfo(x86-64) = 2.72-6.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(x86-64) = 2.72-6.fc41
Processing files: smoldyn-libs-debuginfo-2.72-6.fc41.x86_64
Provides: debuginfo(build-id) = e07e01c6ccbf262b215a995c02029bbcf0e9974f libsmoldyn_shared.so.2.72-2.72-6.fc41.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.72-6.fc41 smoldyn-libs-debuginfo(x86-64) = 2.72-6.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(x86-64) = 2.72-6.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
Wrote: /builddir/build/RPMS/python3-smoldyn-2.72-6.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.72-6.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.72-6.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-2.72-6.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.72-6.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-2.72-6.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.72-6.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-doc-2.72-6.fc41.noarch.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.TF8iyR
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ test -d /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/smoldyn-2.72-build
+ rm -rf /builddir/build/BUILD/smoldyn-2.72-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild smoldyn-2.72-6.fc41.src.rpm
Finish: build phase for smoldyn-2.72-6.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1725502812.205025/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.72-6.fc41.src.rpm) Config(child) 1 minutes 24 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
"packages": [
{
"name": "smoldyn",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "src"
},
{
"name": "smoldyn-libs-debuginfo",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "x86_64"
},
{
"name": "smoldyn-doc",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "noarch"
},
{
"name": "smoldyn-libs",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "x86_64"
},
{
"name": "smoldyn-libs-devel",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "x86_64"
},
{
"name": "smoldyn",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "x86_64"
},
{
"name": "smoldyn-debuginfo",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "x86_64"
},
{
"name": "smoldyn-debugsource",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "x86_64"
},
{
"name": "python3-smoldyn",
"epoch": null,
"version": "2.72",
"release": "6.fc41",
"arch": "x86_64"
}
]
}
RPMResults finished