Warning: Permanently added '3.92.173.29' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8447497-fedora-41-x86_64 --chroot fedora-41-x86_64
Version: 1.2
PID: 9268
Logging PID: 9269
Task:
{'allow_user_ssh': False,
'appstream': False,
'background': True,
'build_id': 8447497,
'buildroot_pkgs': [],
'chroot': 'fedora-41-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': '883c850f7a7078c3ba2ef27e79686663235bb72a',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/ProDy',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'ProDy',
'package_version': '2.4.1-9',
'project_dirname': 'automatic-obsoletes',
'project_name': 'automatic-obsoletes',
'project_owner': 'torsava',
'repo_priority': None,
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-41-x86_64/',
'id': 'copr_base',
'name': 'Copr repository',
'priority': None}],
'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/sagitter',
'source_json': {},
'source_type': None,
'ssh_public_keys': None,
'storage': None,
'submitter': 'https://src.fedoraproject.org/user/sagitter',
'tags': [],
'task_id': '8447497-fedora-41-x86_64',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/ProDy /var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy'...
Running: git checkout 883c850f7a7078c3ba2ef27e79686663235bb72a --
cmd: ['git', 'checkout', '883c850f7a7078c3ba2ef27e79686663235bb72a', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy
rc: 0
stdout:
stderr: Note: switching to '883c850f7a7078c3ba2ef27e79686663235bb72a'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 883c850 automatic import of ProDy
Running: dist-git-client sources
cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading ProDy-2.4.1.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 25.9M 100 25.9M 0 0 26.7M 0 --:--:-- --:--:-- --:--:-- 26.7M
INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1735152518.492234 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1735152518.492234 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy/ProDy.spec) Config(fedora-41-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.0
INFO: Mock Version: 6.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1735152518.492234/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:41
INFO: Pulling image: registry.fedoraproject.org/fedora:41
INFO: Tagging container image as mock-bootstrap-67891990-081d-4b97-a102-fd801e8ce2a9
INFO: Checking that 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 image matches host's architecture
INFO: Copy content of container 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 to /var/lib/mock/fedora-41-x86_64-bootstrap-1735152518.492234/root
INFO: mounting 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 with podman image mount
INFO: image 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 as /var/lib/containers/storage/overlay/a8c3459a7bd0224de6a1d3e3830255fc91a1ca4c00562a0dd71d93ff724d5bd5/merged
INFO: umounting image 1a20282ac0ad1eb0ef9ed049580007c7c6a30139828d8d53add2a6cc32ed4d07 (/var/lib/containers/storage/overlay/a8c3459a7bd0224de6a1d3e3830255fc91a1ca4c00562a0dd71d93ff724d5bd5/merged) with podman image umount
INFO: Removing image mock-bootstrap-67891990-081d-4b97-a102-fd801e8ce2a9
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1735152518.492234/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.20.0-1.fc41.x86_64
rpm-sequoia-1.7.0-3.fc41.x86_64
dnf5-5.2.8.1-2.fc41.x86_64
dnf5-plugins-5.2.8.1-2.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
updates 100% | 24.6 MiB/s | 7.6 MiB | 00m00s
fedora 100% | 55.5 MiB/s | 35.2 MiB | 00m01s
Copr repository 100% | 63.5 MiB/s | 3.9 MiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing group/module packages:
bash x86_64 5.2.32-1.fc41 fedora 8.2 MiB
bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB
coreutils x86_64 9.5-11.fc41 updates 5.7 MiB
cpio x86_64 2.15-2.fc41 fedora 1.1 MiB
diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB
fedora-release-common noarch 41-29 updates 19.7 KiB
findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB
gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB
glibc-minimal-langpack x86_64 2.40-17.fc41 updates 0.0 B
grep x86_64 3.11-9.fc41 fedora 1.0 MiB
gzip x86_64 1.13-2.fc41 fedora 389.0 KiB
info x86_64 7.1-3.fc41 fedora 361.8 KiB
patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB
redhat-rpm-config noarch 293-1.fc41 fedora 183.5 KiB
rpm-build x86_64 4.20.0-3.fc41 copr_base 185.8 KiB
sed x86_64 4.9-3.fc41 fedora 861.5 KiB
shadow-utils x86_64 2:4.15.1-12.fc41 fedora 4.1 MiB
tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB
unzip x86_64 6.0-64.fc41 fedora 386.8 KiB
util-linux x86_64 2.40.2-8.fc41 copr_base 3.6 MiB
which x86_64 2.21-42.fc41 fedora 80.2 KiB
xz x86_64 1:5.6.2-2.fc41 fedora 1.2 MiB
Installing dependencies:
add-determinism x86_64 0.3.6-3.fc41 updates 2.4 MiB
alternatives x86_64 1.31-1.fc41 updates 64.8 KiB
ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB
audit-libs x86_64 4.0.2-1.fc41 copr_base 331.3 KiB
authselect x86_64 1.5.0-8.fc41 fedora 157.6 KiB
authselect-libs x86_64 1.5.0-8.fc41 fedora 822.2 KiB
basesystem noarch 11-21.fc41 fedora 0.0 B
binutils x86_64 2.43.1-5.fc41 updates 27.4 MiB
build-reproducibility-srpm-macros noarch 0.3.6-3.fc41 updates 735.0 B
bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB
ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc41 fedora 2.4 MiB
coreutils-common x86_64 9.5-11.fc41 updates 11.2 MiB
cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB
crypto-policies noarch 20241029-1.git8baf557.fc41 updates 136.9 KiB
curl x86_64 8.9.1-2.fc41 fedora 796.2 KiB
cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB
debugedit x86_64 5.1-2.fc41 updates 200.6 KiB
dwz x86_64 0.15-8.fc41 fedora 298.9 KiB
ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB
efi-srpm-macros noarch 5-13.fc41 updates 40.2 KiB
elfutils x86_64 0.192-7.fc41 updates 2.6 MiB
elfutils-debuginfod-client x86_64 0.192-7.fc41 updates 81.4 KiB
elfutils-default-yama-scope noarch 0.192-7.fc41 updates 1.8 KiB
elfutils-libelf x86_64 0.192-7.fc41 updates 1.2 MiB
elfutils-libs x86_64 0.192-7.fc41 updates 654.9 KiB
fedora-gpg-keys noarch 41-1 fedora 126.4 KiB
fedora-release noarch 41-29 updates 0.0 B
fedora-release-identity-basic noarch 41-29 updates 682.0 B
fedora-repos noarch 41-1 fedora 4.9 KiB
file x86_64 5.45-8.fc41 copr_base 103.5 KiB
file-libs x86_64 5.45-8.fc41 copr_base 9.9 MiB
filesystem x86_64 3.18-23.fc41 fedora 106.0 B
fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB
forge-srpm-macros noarch 0.4.0-1.fc41 updates 38.9 KiB
fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B
gdb-minimal x86_64 15.2-3.fc41 updates 13.0 MiB
gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB
gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB
ghc-srpm-macros noarch 1.9.1-2.fc41 fedora 747.0 B
glibc x86_64 2.40-17.fc41 updates 6.6 MiB
glibc-common x86_64 2.40-17.fc41 updates 1.0 MiB
glibc-gconv-extra x86_64 2.40-17.fc41 updates 7.8 MiB
gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB
gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB
go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB
jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB
json-c x86_64 0.17-4.fc41 fedora 82.4 KiB
kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB
keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB
krb5-libs x86_64 1.21.3-3.fc41 updates 2.3 MiB
libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB
libarchive x86_64 3.7.4-4.fc41 updates 926.6 KiB
libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB
libblkid x86_64 2.40.2-8.fc41 copr_base 262.5 KiB
libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB
libcap x86_64 2.70-4.fc41 fedora 220.2 KiB
libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB
libcom_err x86_64 1.47.1-6.fc41 fedora 67.2 KiB
libcurl x86_64 8.9.1-2.fc41 fedora 818.1 KiB
libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB
libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB
libfdisk x86_64 2.40.2-8.fc41 copr_base 362.9 KiB
libffi x86_64 3.4.6-3.fc41 fedora 86.4 KiB
libgcc x86_64 14.2.1-3.fc41 fedora 274.6 KiB
libgomp x86_64 14.2.1-3.fc41 fedora 523.5 KiB
libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB
libmount x86_64 2.40.2-8.fc41 copr_base 351.8 KiB
libnghttp2 x86_64 1.62.1-2.fc41 fedora 166.1 KiB
libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB
libpkgconf x86_64 2.3.0-1.fc41 fedora 78.2 KiB
libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB
libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB
libselinux x86_64 3.7-7.fc41 copr_base 181.0 KiB
libsemanage x86_64 3.7-4.fc41 copr_base 297.5 KiB
libsepol x86_64 3.7-2.fc41 fedora 817.8 KiB
libsmartcols x86_64 2.40.2-8.fc41 copr_base 180.4 KiB
libssh x86_64 0.10.6-8.fc41 fedora 513.3 KiB
libssh-config noarch 0.10.6-8.fc41 fedora 277.0 B
libstdc++ x86_64 14.2.1-3.fc41 fedora 2.8 MiB
libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB
libtirpc x86_64 1.3.6-1.fc41 updates 202.7 KiB
libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB
libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB
libuuid x86_64 2.40.2-8.fc41 copr_base 41.4 KiB
libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB
libxcrypt x86_64 4.4.36-12.fc41 updates 269.3 KiB
libxml2 x86_64 2.12.9-1.fc41 copr_base 1.7 MiB
libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB
lua-libs x86_64 5.4.6-6.fc41 fedora 285.0 KiB
lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB
lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB
mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB
ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB
ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB
ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB
openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B
openldap x86_64 2.6.8-6.fc41 updates 635.4 KiB
openssl-libs x86_64 1:3.2.2-9.fc41 fedora 7.8 MiB
p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB
p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB
package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB
pam x86_64 1.6.1-7.fc41 updates 1.8 MiB
pam-libs x86_64 1.6.1-7.fc41 updates 139.0 KiB
pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB
pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB
perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B
pkgconf x86_64 2.3.0-1.fc41 fedora 88.6 KiB
pkgconf-m4 noarch 2.3.0-1.fc41 fedora 14.4 KiB
pkgconf-pkg-config x86_64 2.3.0-1.fc41 fedora 989.0 B
popt x86_64 1.19-7.fc41 fedora 136.9 KiB
publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB
pyproject-srpm-macros noarch 1.16.3-1.fc41 updates 1.9 KiB
python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB
qt5-srpm-macros noarch 5.15.15-1.fc41 fedora 500.0 B
qt6-srpm-macros noarch 6.8.1-4.fc41 updates 456.0 B
readline x86_64 8.2-10.fc41 fedora 493.2 KiB
rpm x86_64 4.20.0-3.fc41 copr_base 3.1 MiB
rpm-build-libs x86_64 4.20.0-3.fc41 copr_base 204.1 KiB
rpm-libs x86_64 4.20.0-3.fc41 copr_base 710.4 KiB
rpm-sequoia x86_64 1.7.0-3.fc41 updates 2.3 MiB
rust-srpm-macros noarch 26.3-3.fc41 copr_base 4.8 KiB
setup noarch 2.15.0-5.fc41 fedora 720.7 KiB
sqlite-libs x86_64 3.46.1-1.fc41 fedora 1.4 MiB
systemd-libs x86_64 256.10-1.fc41 updates 2.0 MiB
util-linux-core x86_64 2.40.2-8.fc41 copr_base 1.5 MiB
xxhash-libs x86_64 0.8.2-4.fc41 fedora 88.4 KiB
xz-libs x86_64 1:5.6.2-2.fc41 fedora 214.4 KiB
zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB
zip x86_64 3.0-41.fc41 fedora 703.2 KiB
zlib-ng-compat x86_64 2.1.7-3.fc41 fedora 134.0 KiB
zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB
Installing groups:
Buildsystem building group
Transaction Summary:
Installing: 153 packages
Total size of inbound packages is 52 MiB. Need to download 52 MiB.
After this operation, 180 MiB extra will be used (install 180 MiB, remove 0 B).
[ 1/153] bzip2-0:1.0.8-19.fc41.x86_64 100% | 4.3 MiB/s | 52.5 KiB | 00m00s
[ 2/153] cpio-0:2.15-2.fc41.x86_64 100% | 17.8 MiB/s | 291.8 KiB | 00m00s
[ 3/153] diffutils-0:3.10-8.fc41.x86_6 100% | 56.6 MiB/s | 405.4 KiB | 00m00s
[ 4/153] bash-0:5.2.32-1.fc41.x86_64 100% | 82.1 MiB/s | 1.8 MiB | 00m00s
[ 5/153] findutils-1:4.10.0-4.fc41.x86 100% | 76.5 MiB/s | 548.5 KiB | 00m00s
[ 6/153] grep-0:3.11-9.fc41.x86_64 100% | 97.6 MiB/s | 299.7 KiB | 00m00s
[ 7/153] gzip-0:1.13-2.fc41.x86_64 100% | 55.4 MiB/s | 170.2 KiB | 00m00s
[ 8/153] info-0:7.1-3.fc41.x86_64 100% | 59.4 MiB/s | 182.5 KiB | 00m00s
[ 9/153] patch-0:2.7.6-25.fc41.x86_64 100% | 25.6 MiB/s | 131.0 KiB | 00m00s
[ 10/153] redhat-rpm-config-0:293-1.fc4 100% | 20.0 MiB/s | 82.0 KiB | 00m00s
[ 11/153] sed-0:4.9-3.fc41.x86_64 100% | 103.4 MiB/s | 317.7 KiB | 00m00s
[ 12/153] unzip-0:6.0-64.fc41.x86_64 100% | 60.2 MiB/s | 184.9 KiB | 00m00s
[ 13/153] tar-2:1.35-4.fc41.x86_64 100% | 168.1 MiB/s | 860.7 KiB | 00m00s
[ 14/153] shadow-utils-2:4.15.1-12.fc41 100% | 146.6 MiB/s | 1.3 MiB | 00m00s
[ 15/153] which-0:2.21-42.fc41.x86_64 100% | 10.1 MiB/s | 41.6 KiB | 00m00s
[ 16/153] xz-1:5.6.2-2.fc41.x86_64 100% | 153.5 MiB/s | 471.5 KiB | 00m00s
[ 17/153] fedora-release-common-0:41-29 100% | 11.5 MiB/s | 23.6 KiB | 00m00s
[ 18/153] coreutils-0:9.5-11.fc41.x86_6 100% | 183.3 MiB/s | 1.1 MiB | 00m00s
[ 19/153] gawk-0:5.3.0-4.fc41.x86_64 100% | 153.0 MiB/s | 1.1 MiB | 00m00s
[ 20/153] rpm-build-0:4.20.0-3.fc41.x86 100% | 6.0 MiB/s | 67.7 KiB | 00m00s
[ 21/153] util-linux-0:2.40.2-8.fc41.x8 100% | 79.9 MiB/s | 1.1 MiB | 00m00s
[ 22/153] filesystem-0:3.18-23.fc41.x86 100% | 181.1 MiB/s | 1.1 MiB | 00m00s
[ 23/153] ncurses-libs-0:6.5-2.20240629 100% | 108.7 MiB/s | 334.0 KiB | 00m00s
[ 24/153] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 20.1 MiB/s | 41.1 KiB | 00m00s
[ 25/153] ed-0:1.20.2-2.fc41.x86_64 100% | 39.9 MiB/s | 81.8 KiB | 00m00s
[ 26/153] glibc-minimal-langpack-0:2.40 100% | 3.8 MiB/s | 104.1 KiB | 00m00s
[ 27/153] libattr-0:2.5.2-4.fc41.x86_64 100% | 8.9 MiB/s | 18.2 KiB | 00m00s
[ 28/153] pcre2-0:10.44-1.fc41.1.x86_64 100% | 39.6 MiB/s | 243.1 KiB | 00m00s
[ 29/153] ansible-srpm-macros-0:1-16.fc 100% | 10.1 MiB/s | 20.8 KiB | 00m00s
[ 30/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 7.8 MiB/s | 8.0 KiB | 00m00s
[ 31/153] fonts-srpm-macros-1:2.0.5-17. 100% | 13.2 MiB/s | 27.0 KiB | 00m00s
[ 32/153] dwz-0:0.15-8.fc41.x86_64 100% | 27.1 MiB/s | 138.9 KiB | 00m00s
[ 33/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 4.4 MiB/s | 9.1 KiB | 00m00s
[ 34/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 4.4 MiB/s | 9.0 KiB | 00m00s
[ 35/153] lua-srpm-macros-0:1-14.fc41.n 100% | 4.3 MiB/s | 8.9 KiB | 00m00s
[ 36/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 9.1 MiB/s | 28.0 KiB | 00m00s
[ 37/153] kernel-srpm-macros-0:1.0-24.f 100% | 3.2 MiB/s | 9.9 KiB | 00m00s
[ 38/153] ocaml-srpm-macros-0:10-3.fc41 100% | 4.5 MiB/s | 9.2 KiB | 00m00s
[ 39/153] openblas-srpm-macros-0:2-18.f 100% | 3.8 MiB/s | 7.7 KiB | 00m00s
[ 40/153] package-notes-srpm-macros-0:0 100% | 3.2 MiB/s | 9.8 KiB | 00m00s
[ 41/153] perl-srpm-macros-0:1-56.fc41. 100% | 2.8 MiB/s | 8.5 KiB | 00m00s
[ 42/153] python-srpm-macros-0:3.13-3.f 100% | 11.6 MiB/s | 23.7 KiB | 00m00s
[ 43/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 4.3 MiB/s | 8.9 KiB | 00m00s
[ 44/153] zig-srpm-macros-0:1-3.fc41.no 100% | 7.9 MiB/s | 8.1 KiB | 00m00s
[ 45/153] libacl-0:2.3.2-2.fc41.x86_64 100% | 23.9 MiB/s | 24.5 KiB | 00m00s
[ 46/153] zip-0:3.0-41.fc41.x86_64 100% | 86.2 MiB/s | 264.8 KiB | 00m00s
[ 47/153] libeconf-0:0.6.2-3.fc41.x86_6 100% | 10.5 MiB/s | 32.2 KiB | 00m00s
[ 48/153] xz-libs-1:5.6.2-2.fc41.x86_64 100% | 54.6 MiB/s | 111.8 KiB | 00m00s
[ 49/153] setup-0:2.15.0-5.fc41.noarch 100% | 25.1 MiB/s | 154.4 KiB | 00m00s
[ 50/153] gmp-1:6.3.0-2.fc41.x86_64 100% | 51.8 MiB/s | 318.0 KiB | 00m00s
[ 51/153] coreutils-common-0:9.5-11.fc4 100% | 212.2 MiB/s | 2.1 MiB | 00m00s
[ 52/153] libcap-0:2.70-4.fc41.x86_64 100% | 14.1 MiB/s | 86.7 KiB | 00m00s
[ 53/153] fedora-repos-0:41-1.noarch 100% | 4.5 MiB/s | 9.2 KiB | 00m00s
[ 54/153] mpfr-0:4.2.1-5.fc41.x86_64 100% | 67.6 MiB/s | 346.3 KiB | 00m00s
[ 55/153] openssl-libs-1:3.2.2-9.fc41.x 100% | 231.1 MiB/s | 2.3 MiB | 00m00s
[ 56/153] readline-0:8.2-10.fc41.x86_64 100% | 34.7 MiB/s | 213.2 KiB | 00m00s
[ 57/153] glibc-common-0:2.40-17.fc41.x 100% | 61.4 MiB/s | 377.3 KiB | 00m00s
[ 58/153] popt-0:1.19-7.fc41.x86_64 100% | 21.5 MiB/s | 65.9 KiB | 00m00s
[ 59/153] zstd-0:1.5.6-2.fc41.x86_64 100% | 117.6 MiB/s | 481.5 KiB | 00m00s
[ 60/153] zlib-ng-compat-0:2.1.7-3.fc41 100% | 38.0 MiB/s | 77.7 KiB | 00m00s
[ 61/153] libblkid-0:2.40.2-8.fc41.x86_ 100% | 15.3 MiB/s | 125.5 KiB | 00m00s
[ 62/153] libfdisk-0:2.40.2-8.fc41.x86_ 100% | 19.5 MiB/s | 159.9 KiB | 00m00s
[ 63/153] rpm-0:4.20.0-3.fc41.x86_64 100% | 41.7 MiB/s | 512.3 KiB | 00m00s
[ 64/153] libmount-0:2.40.2-8.fc41.x86_ 100% | 30.5 MiB/s | 156.2 KiB | 00m00s
[ 65/153] libsmartcols-0:2.40.2-8.fc41. 100% | 13.7 MiB/s | 84.4 KiB | 00m00s
[ 66/153] libuuid-0:2.40.2-8.fc41.x86_6 100% | 4.1 MiB/s | 29.5 KiB | 00m00s
[ 67/153] ncurses-base-0:6.5-2.20240629 100% | 43.1 MiB/s | 88.3 KiB | 00m00s
[ 68/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 73.2 MiB/s | 149.9 KiB | 00m00s
[ 69/153] util-linux-core-0:2.40.2-8.fc 100% | 84.9 MiB/s | 521.5 KiB | 00m00s
[ 70/153] libgcc-0:14.2.1-3.fc41.x86_64 100% | 43.4 MiB/s | 133.3 KiB | 00m00s
[ 71/153] fedora-gpg-keys-0:41-1.noarch 100% | 65.3 MiB/s | 133.7 KiB | 00m00s
[ 72/153] ca-certificates-0:2024.2.69_v 100% | 212.7 MiB/s | 871.2 KiB | 00m00s
[ 73/153] libstdc++-0:14.2.1-3.fc41.x86 100% | 173.4 MiB/s | 887.8 KiB | 00m00s
[ 74/153] lz4-libs-0:1.10.0-1.fc41.x86_ 100% | 23.0 MiB/s | 70.7 KiB | 00m00s
[ 75/153] curl-0:8.9.1-2.fc41.x86_64 100% | 102.6 MiB/s | 315.1 KiB | 00m00s
[ 76/153] basesystem-0:11-21.fc41.noarc 100% | 2.4 MiB/s | 7.4 KiB | 00m00s
[ 77/153] glibc-gconv-extra-0:2.40-17.f 100% | 165.5 MiB/s | 1.5 MiB | 00m00s
[ 78/153] rpm-libs-0:4.20.0-3.fc41.x86_ 100% | 57.5 MiB/s | 294.2 KiB | 00m00s
[ 79/153] glibc-0:2.40-17.fc41.x86_64 100% | 165.4 MiB/s | 2.2 MiB | 00m00s
[ 80/153] libzstd-0:1.5.6-2.fc41.x86_64 100% | 101.0 MiB/s | 310.3 KiB | 00m00s
[ 81/153] lua-libs-0:5.4.6-6.fc41.x86_6 100% | 43.0 MiB/s | 132.0 KiB | 00m00s
[ 82/153] rpm-build-libs-0:4.20.0-3.fc4 100% | 31.3 MiB/s | 96.3 KiB | 00m00s
[ 83/153] libgomp-0:14.2.1-3.fc41.x86_6 100% | 86.4 MiB/s | 354.1 KiB | 00m00s
[ 84/153] sqlite-libs-0:3.46.1-1.fc41.x 100% | 116.0 MiB/s | 712.7 KiB | 00m00s
[ 85/153] libxcrypt-0:4.4.36-12.fc41.x8 100% | 37.7 MiB/s | 115.7 KiB | 00m00s
[ 86/153] systemd-libs-0:256.10-1.fc41. 100% | 135.0 MiB/s | 691.2 KiB | 00m00s
[ 87/153] libselinux-0:3.7-7.fc41.x86_6 100% | 21.8 MiB/s | 89.2 KiB | 00m00s
[ 88/153] libsepol-0:3.7-2.fc41.x86_64 100% | 111.4 MiB/s | 342.2 KiB | 00m00s
[ 89/153] authselect-libs-0:1.5.0-8.fc4 100% | 71.0 MiB/s | 218.0 KiB | 00m00s
[ 90/153] pam-0:1.6.1-7.fc41.x86_64 100% | 135.5 MiB/s | 555.0 KiB | 00m00s
[ 91/153] pam-libs-0:1.6.1-7.fc41.x86_6 100% | 18.7 MiB/s | 57.4 KiB | 00m00s
[ 92/153] authselect-0:1.5.0-8.fc41.x86 100% | 71.2 MiB/s | 145.8 KiB | 00m00s
[ 93/153] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 28.9 MiB/s | 29.6 KiB | 00m00s
[ 94/153] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 27.5 MiB/s | 56.3 KiB | 00m00s
[ 95/153] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 31.8 MiB/s | 32.6 KiB | 00m00s
[ 96/153] audit-libs-0:4.0.2-1.fc41.x86 100% | 30.9 MiB/s | 126.7 KiB | 00m00s
[ 97/153] rpm-sequoia-0:1.7.0-3.fc41.x8 100% | 201.6 MiB/s | 825.7 KiB | 00m00s
[ 98/153] elfutils-libelf-0:0.192-7.fc4 100% | 66.6 MiB/s | 204.6 KiB | 00m00s
[ 99/153] elfutils-libs-0:0.192-7.fc41. 100% | 81.7 MiB/s | 250.8 KiB | 00m00s
[100/153] elfutils-debuginfod-client-0: 100% | 21.4 MiB/s | 43.9 KiB | 00m00s
[101/153] elfutils-0:0.192-7.fc41.x86_6 100% | 122.4 MiB/s | 501.3 KiB | 00m00s
[102/153] json-c-0:0.17-4.fc41.x86_64 100% | 21.5 MiB/s | 44.0 KiB | 00m00s
[103/153] file-0:5.45-8.fc41.x86_64 100% | 16.0 MiB/s | 49.2 KiB | 00m00s
[104/153] jansson-0:2.13.1-10.fc41.x86_ 100% | 21.7 MiB/s | 44.4 KiB | 00m00s
[105/153] debugedit-0:5.1-2.fc41.x86_64 100% | 25.5 MiB/s | 78.3 KiB | 00m00s
[106/153] file-libs-0:5.45-8.fc41.x86_6 100% | 62.1 MiB/s | 762.6 KiB | 00m00s
[107/153] libarchive-0:3.7.4-4.fc41.x86 100% | 99.9 MiB/s | 409.1 KiB | 00m00s
[108/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 3.3 MiB/s | 10.0 KiB | 00m00s
[109/153] pkgconf-0:2.3.0-1.fc41.x86_64 100% | 22.1 MiB/s | 45.2 KiB | 00m00s
[110/153] pkgconf-m4-0:2.3.0-1.fc41.noa 100% | 7.0 MiB/s | 14.3 KiB | 00m00s
[111/153] binutils-0:2.43.1-5.fc41.x86_ 100% | 273.1 MiB/s | 6.3 MiB | 00m00s
[112/153] libpkgconf-0:2.3.0-1.fc41.x86 100% | 5.4 MiB/s | 38.5 KiB | 00m00s
[113/153] libsemanage-0:3.7-4.fc41.x86_ 100% | 19.2 MiB/s | 117.9 KiB | 00m00s
[114/153] build-reproducibility-srpm-ma 100% | 5.3 MiB/s | 10.8 KiB | 00m00s
[115/153] efi-srpm-macros-0:5-13.fc41.n 100% | 11.0 MiB/s | 22.5 KiB | 00m00s
[116/153] add-determinism-0:0.3.6-3.fc4 100% | 171.1 MiB/s | 875.9 KiB | 00m00s
[117/153] pyproject-srpm-macros-0:1.16. 100% | 6.8 MiB/s | 13.9 KiB | 00m00s
[118/153] forge-srpm-macros-0:0.4.0-1.f 100% | 6.4 MiB/s | 19.7 KiB | 00m00s
[119/153] qt6-srpm-macros-0:6.8.1-4.fc4 100% | 9.1 MiB/s | 9.3 KiB | 00m00s
[120/153] crypto-policies-0:20241029-1. 100% | 47.6 MiB/s | 97.5 KiB | 00m00s
[121/153] rust-srpm-macros-0:26.3-3.fc4 100% | 4.1 MiB/s | 12.7 KiB | 00m00s
[122/153] libtirpc-0:1.3.6-1.fc41.x86_6 100% | 46.1 MiB/s | 94.4 KiB | 00m00s
[123/153] libcom_err-0:1.47.1-6.fc41.x8 100% | 13.0 MiB/s | 26.6 KiB | 00m00s
[124/153] libffi-0:3.4.6-3.fc41.x86_64 100% | 19.5 MiB/s | 39.9 KiB | 00m00s
[125/153] p11-kit-0:0.25.5-3.fc41.x86_6 100% | 119.9 MiB/s | 490.9 KiB | 00m00s
[126/153] libtasn1-0:4.19.0-9.fc41.x86_ 100% | 24.2 MiB/s | 74.2 KiB | 00m00s
[127/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 32.3 MiB/s | 132.1 KiB | 00m00s
[128/153] gdbm-1:1.23-7.fc41.x86_64 100% | 74.1 MiB/s | 151.8 KiB | 00m00s
[129/153] libpwquality-0:1.4.5-11.fc41. 100% | 58.1 MiB/s | 119.0 KiB | 00m00s
[130/153] cracklib-0:2.9.11-6.fc41.x86_ 100% | 45.0 MiB/s | 92.1 KiB | 00m00s
[131/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 15.5 MiB/s | 31.6 KiB | 00m00s
[132/153] krb5-libs-0:1.21.3-3.fc41.x86 100% | 185.0 MiB/s | 757.9 KiB | 00m00s
[133/153] libverto-0:0.3.2-9.fc41.x86_6 100% | 4.0 MiB/s | 20.7 KiB | 00m00s
[134/153] elfutils-default-yama-scope-0 100% | 6.1 MiB/s | 12.5 KiB | 00m00s
[135/153] alternatives-0:1.31-1.fc41.x8 100% | 19.2 MiB/s | 39.4 KiB | 00m00s
[136/153] libxml2-0:2.12.9-1.fc41.x86_6 100% | 91.7 MiB/s | 657.3 KiB | 00m00s
[137/153] xxhash-libs-0:0.8.2-4.fc41.x8 100% | 18.0 MiB/s | 36.8 KiB | 00m00s
[138/153] fedora-release-0:41-29.noarch 100% | 3.1 MiB/s | 12.8 KiB | 00m00s
[139/153] libcurl-0:8.9.1-2.fc41.x86_64 100% | 117.8 MiB/s | 361.9 KiB | 00m00s
[140/153] libidn2-0:2.3.7-2.fc41.x86_64 100% | 57.8 MiB/s | 118.4 KiB | 00m00s
[141/153] libnghttp2-0:1.62.1-2.fc41.x8 100% | 37.4 MiB/s | 76.6 KiB | 00m00s
[142/153] libssh-0:0.10.6-8.fc41.x86_64 100% | 103.4 MiB/s | 211.8 KiB | 00m00s
[143/153] libunistring-0:1.1-8.fc41.x86 100% | 133.0 MiB/s | 544.8 KiB | 00m00s
[144/153] publicsuffix-list-dafsa-0:202 100% | 28.5 MiB/s | 58.3 KiB | 00m00s
[145/153] libssh-config-0:0.10.6-8.fc41 100% | 9.0 MiB/s | 9.2 KiB | 00m00s
[146/153] libpsl-0:0.21.5-4.fc41.x86_64 100% | 2.2 MiB/s | 64.1 KiB | 00m00s
[147/153] fedora-release-identity-basic 100% | 904.5 KiB/s | 13.6 KiB | 00m00s
[148/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 155.2 MiB/s | 794.9 KiB | 00m00s
[149/153] libevent-0:2.1.12-14.fc41.x86 100% | 83.8 MiB/s | 257.5 KiB | 00m00s
[150/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 17.4 MiB/s | 35.6 KiB | 00m00s
[151/153] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 110.8 MiB/s | 340.5 KiB | 00m00s
[152/153] openldap-0:2.6.8-6.fc41.x86_6 100% | 3.3 MiB/s | 243.0 KiB | 00m00s
[153/153] gdb-minimal-0:15.2-3.fc41.x86 100% | 28.9 MiB/s | 4.3 MiB | 00m00s
--------------------------------------------------------------------------------
[153/153] Total 100% | 72.3 MiB/s | 52.4 MiB | 00m01s
Running transaction
Importing OpenPGP key 0xE99D6AD1:
UserID : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
[ 1/155] Verify package files 100% | 889.0 B/s | 153.0 B | 00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Finished pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> [RPM] /var/lib/mock/fedora-41-x86_64-1735152518.492234/root/var/cache/dnf/co
[ 2/155] Prepare transaction 100% | 4.3 KiB/s | 153.0 B | 00m00s
[ 3/155] Installing libgcc-0:14.2.1-3. 100% | 269.8 MiB/s | 276.3 KiB | 00m00s
[ 4/155] Installing fedora-release-ide 100% | 0.0 B/s | 940.0 B | 00m00s
[ 5/155] Installing fedora-gpg-keys-0: 100% | 56.1 MiB/s | 172.2 KiB | 00m00s
[ 6/155] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s
[ 7/155] Installing fedora-release-com 100% | 23.4 MiB/s | 24.0 KiB | 00m00s
[ 8/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s
[ 9/155] Installing setup-0:2.15.0-5.f 100% | 59.1 MiB/s | 726.1 KiB | 00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 10/155] Installing filesystem-0:3.18- 100% | 3.6 MiB/s | 212.5 KiB | 00m00s
[ 11/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s
[ 12/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s
[ 13/155] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s
[ 14/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s
[ 15/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s
[ 16/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s
[ 17/155] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s
[ 18/155] Installing ncurses-base-0:6.5 100% | 85.9 MiB/s | 351.7 KiB | 00m00s
[ 19/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s
[ 20/155] Installing ncurses-libs-0:6.5 100% | 239.7 MiB/s | 981.8 KiB | 00m00s
[ 21/155] Installing glibc-0:2.40-17.fc 100% | 314.9 MiB/s | 6.6 MiB | 00m00s
[ 22/155] Installing bash-0:5.2.32-1.fc 100% | 453.8 MiB/s | 8.2 MiB | 00m00s
[ 23/155] Installing glibc-common-0:2.4 100% | 207.1 MiB/s | 1.0 MiB | 00m00s
[ 24/155] Installing glibc-gconv-extra- 100% | 280.8 MiB/s | 7.9 MiB | 00m00s
[ 25/155] Installing zlib-ng-compat-0:2 100% | 131.6 MiB/s | 134.8 KiB | 00m00s
[ 26/155] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.8 KiB | 00m00s
[ 27/155] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s
[ 28/155] Installing readline-0:8.2-10. 100% | 241.8 MiB/s | 495.3 KiB | 00m00s
[ 29/155] Installing popt-0:1.19-7.fc41 100% | 70.1 MiB/s | 143.5 KiB | 00m00s
[ 30/155] Installing libuuid-0:2.40.2-8 100% | 0.0 B/s | 42.5 KiB | 00m00s
[ 31/155] Installing libblkid-0:2.40.2- 100% | 257.5 MiB/s | 263.6 KiB | 00m00s
[ 32/155] Installing libattr-0:2.5.2-4. 100% | 0.0 B/s | 29.5 KiB | 00m00s
[ 33/155] Installing libacl-0:2.3.2-2.f 100% | 0.0 B/s | 40.7 KiB | 00m00s
[ 34/155] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB | 00m00s
[ 35/155] Installing libstdc++-0:14.2.1 100% | 395.2 MiB/s | 2.8 MiB | 00m00s
[ 36/155] Installing libzstd-0:1.5.6-2. 100% | 389.3 MiB/s | 797.2 KiB | 00m00s
[ 37/155] Installing elfutils-libelf-0: 100% | 389.0 MiB/s | 1.2 MiB | 00m00s
[ 38/155] Installing libxcrypt-0:4.4.36 100% | 265.6 MiB/s | 272.0 KiB | 00m00s
[ 39/155] Installing libeconf-0:0.6.2-3 100% | 0.0 B/s | 59.7 KiB | 00m00s
[ 40/155] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s
[ 41/155] Installing dwz-0:0.15-8.fc41. 100% | 293.3 MiB/s | 300.3 KiB | 00m00s
[ 42/155] Installing mpfr-0:4.2.1-5.fc4 100% | 271.4 MiB/s | 833.7 KiB | 00m00s
[ 43/155] Installing gawk-0:5.3.0-4.fc4 100% | 346.4 MiB/s | 1.7 MiB | 00m00s
[ 44/155] Installing unzip-0:6.0-64.fc4 100% | 190.6 MiB/s | 390.3 KiB | 00m00s
[ 45/155] Installing file-libs-0:5.45-8 100% | 764.2 MiB/s | 9.9 MiB | 00m00s
[ 46/155] Installing file-0:5.45-8.fc41 100% | 14.6 MiB/s | 105.0 KiB | 00m00s
>>> Running pre-install scriptlet: crypto-policies-0:20241029-1.git8baf557.fc41.
>>> Finished pre-install scriptlet: crypto-policies-0:20241029-1.git8baf557.fc41
>>> Scriptlet output:
>>> /var/tmp/rpm-tmp.YbYIuc: line 2: rm: command not found
>>>
[ 47/155] Installing crypto-policies-0: 100% | 31.9 MiB/s | 163.3 KiB | 00m00s
[ 48/155] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB | 00m00s
[ 49/155] Installing grep-0:3.11-9.fc41 100% | 200.7 MiB/s | 1.0 MiB | 00m00s
[ 50/155] Installing xz-1:5.6.2-2.fc41. 100% | 241.0 MiB/s | 1.2 MiB | 00m00s
[ 51/155] Installing libsmartcols-0:2.4 100% | 177.2 MiB/s | 181.5 KiB | 00m00s
[ 52/155] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s
[ 53/155] Installing lua-libs-0:5.4.6-6 100% | 279.5 MiB/s | 286.2 KiB | 00m00s
[ 54/155] Installing libsepol-0:3.7-2.f 100% | 399.8 MiB/s | 818.8 KiB | 00m00s
[ 55/155] Installing libselinux-0:3.7-7 100% | 178.0 MiB/s | 182.3 KiB | 00m00s
[ 56/155] Installing sed-0:4.9-3.fc41.x 100% | 212.3 MiB/s | 869.7 KiB | 00m00s
[ 57/155] Installing findutils-1:4.10.0 100% | 371.6 MiB/s | 1.9 MiB | 00m00s
[ 58/155] Installing libmount-0:2.40.2- 100% | 344.7 MiB/s | 352.9 KiB | 00m00s
[ 59/155] Installing libcap-ng-0:0.8.5- 100% | 69.4 MiB/s | 71.0 KiB | 00m00s
[ 60/155] Installing audit-libs-0:4.0.2 100% | 325.6 MiB/s | 333.4 KiB | 00m00s
[ 61/155] Installing pam-libs-0:1.6.1-7 100% | 137.9 MiB/s | 141.3 KiB | 00m00s
[ 62/155] Installing libcap-0:2.70-4.fc 100% | 110.0 MiB/s | 225.2 KiB | 00m00s
[ 63/155] Installing systemd-libs-0:256 100% | 398.0 MiB/s | 2.0 MiB | 00m00s
[ 64/155] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.3 KiB | 00m00s
[ 65/155] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s
[ 66/155] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s
[ 67/155] Installing p11-kit-0:0.25.5-3 100% | 275.9 MiB/s | 2.2 MiB | 00m00s
[ 68/155] Installing alternatives-0:1.3 100% | 0.0 B/s | 66.4 KiB | 00m00s
[ 69/155] Installing libunistring-0:1.1 100% | 346.1 MiB/s | 1.7 MiB | 00m00s
[ 70/155] Installing libidn2-0:2.3.7-2. 100% | 163.6 MiB/s | 335.1 KiB | 00m00s
[ 71/155] Installing libpsl-0:0.21.5-4. 100% | 0.0 B/s | 81.7 KiB | 00m00s
[ 72/155] Installing p11-kit-trust-0:0. 100% | 54.8 MiB/s | 393.1 KiB | 00m00s
[ 73/155] Installing util-linux-core-0: 100% | 253.4 MiB/s | 1.5 MiB | 00m00s
[ 74/155] Installing libsemanage-0:3.7- 100% | 146.1 MiB/s | 299.3 KiB | 00m00s
[ 75/155] Installing shadow-utils-2:4.1 100% | 245.0 MiB/s | 4.2 MiB | 00m00s
[ 76/155] Installing tar-2:1.35-4.fc41. 100% | 369.8 MiB/s | 3.0 MiB | 00m00s
[ 77/155] Installing zstd-0:1.5.6-2.fc4 100% | 422.9 MiB/s | 1.7 MiB | 00m00s
[ 78/155] Installing zip-0:3.0-41.fc41. 100% | 345.2 MiB/s | 707.1 KiB | 00m00s
[ 79/155] Installing gdbm-1:1.23-7.fc41 100% | 227.4 MiB/s | 465.8 KiB | 00m00s
[ 80/155] Installing cyrus-sasl-lib-0:2 100% | 384.3 MiB/s | 2.3 MiB | 00m00s
[ 81/155] Installing libfdisk-0:2.40.2- 100% | 355.3 MiB/s | 363.9 KiB | 00m00s
[ 82/155] Installing libxml2-0:2.12.9-1 100% | 337.2 MiB/s | 1.7 MiB | 00m00s
[ 83/155] Installing bzip2-0:1.0.8-19.f 100% | 97.8 MiB/s | 100.2 KiB | 00m00s
[ 84/155] Installing sqlite-libs-0:3.46 100% | 357.3 MiB/s | 1.4 MiB | 00m00s
[ 85/155] Installing add-determinism-0: 100% | 392.6 MiB/s | 2.4 MiB | 00m00s
[ 86/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s
[ 87/155] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB | 00m00s
[ 88/155] Installing patch-0:2.7.6-25.f 100% | 261.9 MiB/s | 268.2 KiB | 00m00s
[ 89/155] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s
[ 90/155] Installing elfutils-libs-0:0. 100% | 320.7 MiB/s | 656.7 KiB | 00m00s
[ 91/155] Installing cpio-0:2.15-2.fc41 100% | 274.9 MiB/s | 1.1 MiB | 00m00s
[ 92/155] Installing diffutils-0:3.10-8 100% | 318.1 MiB/s | 1.6 MiB | 00m00s
[ 93/155] Installing libgomp-0:14.2.1-3 100% | 512.5 MiB/s | 524.8 KiB | 00m00s
[ 94/155] Installing json-c-0:0.17-4.fc 100% | 81.7 MiB/s | 83.6 KiB | 00m00s
[ 95/155] Installing jansson-0:2.13.1-1 100% | 87.6 MiB/s | 89.7 KiB | 00m00s
[ 96/155] Installing libpkgconf-0:2.3.0 100% | 77.5 MiB/s | 79.3 KiB | 00m00s
[ 97/155] Installing pkgconf-0:2.3.0-1. 100% | 89.0 MiB/s | 91.1 KiB | 00m00s
[ 98/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s
[ 99/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s
[100/155] Installing libverto-0:0.3.2-9 100% | 0.0 B/s | 31.3 KiB | 00m00s
[101/155] Installing xxhash-libs-0:0.8. 100% | 87.7 MiB/s | 89.8 KiB | 00m00s
[102/155] Installing libnghttp2-0:1.62. 100% | 163.2 MiB/s | 167.1 KiB | 00m00s
[103/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s
[104/155] Installing libbrotli-0:1.1.0- 100% | 273.4 MiB/s | 839.9 KiB | 00m00s
[105/155] Installing coreutils-common-0 100% | 414.5 MiB/s | 11.2 MiB | 00m00s
[106/155] Installing openssl-libs-1:3.2 100% | 434.9 MiB/s | 7.8 MiB | 00m00s
[107/155] Installing coreutils-0:9.5-11 100% | 285.3 MiB/s | 5.7 MiB | 00m00s
[108/155] Installing ca-certificates-0: 100% | 4.1 MiB/s | 2.4 MiB | 00m01s
[109/155] Installing krb5-libs-0:1.21.3 100% | 289.9 MiB/s | 2.3 MiB | 00m00s
[110/155] Installing libarchive-0:3.7.4 100% | 302.3 MiB/s | 928.6 KiB | 00m00s
[111/155] Installing libtirpc-0:1.3.6-1 100% | 199.7 MiB/s | 204.5 KiB | 00m00s
[112/155] Installing gzip-0:1.13-2.fc41 100% | 192.7 MiB/s | 394.6 KiB | 00m00s
[113/155] Installing authselect-libs-0: 100% | 204.4 MiB/s | 837.2 KiB | 00m00s
[114/155] Installing cracklib-0:2.9.11- 100% | 81.5 MiB/s | 250.3 KiB | 00m00s
[115/155] Installing libpwquality-0:1.4 100% | 140.0 MiB/s | 430.1 KiB | 00m00s
[116/155] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s
[117/155] Installing pam-0:1.6.1-7.fc41 100% | 170.7 MiB/s | 1.9 MiB | 00m00s
[118/155] Installing libssh-0:0.10.6-8. 100% | 251.7 MiB/s | 515.4 KiB | 00m00s
[119/155] Installing rpm-sequoia-0:1.7. 100% | 387.3 MiB/s | 2.3 MiB | 00m00s
[120/155] Installing rpm-libs-0:4.20.0- 100% | 347.6 MiB/s | 711.9 KiB | 00m00s
[121/155] Installing rpm-build-libs-0:4 100% | 200.1 MiB/s | 204.9 KiB | 00m00s
[122/155] Installing libevent-0:2.1.12- 100% | 292.8 MiB/s | 899.5 KiB | 00m00s
[123/155] Installing openldap-0:2.6.8-6 100% | 208.1 MiB/s | 639.2 KiB | 00m00s
[124/155] Installing libcurl-0:8.9.1-2. 100% | 400.0 MiB/s | 819.2 KiB | 00m00s
[125/155] Installing elfutils-debuginfo 100% | 81.8 MiB/s | 83.8 KiB | 00m00s
[126/155] Installing elfutils-0:0.192-7 100% | 375.6 MiB/s | 2.6 MiB | 00m00s
[127/155] Installing binutils-0:2.43.1- 100% | 402.8 MiB/s | 27.4 MiB | 00m00s
[128/155] Installing gdb-minimal-0:15.2 100% | 419.1 MiB/s | 13.0 MiB | 00m00s
[129/155] Installing debugedit-0:5.1-2. 100% | 198.5 MiB/s | 203.3 KiB | 00m00s
[130/155] Installing curl-0:8.9.1-2.fc4 100% | 86.7 MiB/s | 798.6 KiB | 00m00s
[131/155] Installing rpm-0:4.20.0-3.fc4 100% | 192.2 MiB/s | 2.5 MiB | 00m00s
[132/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s
[133/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s
[134/155] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s
[135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s
[136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s
[137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s
[138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s
[139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s
[140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s
[141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s
[142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s
[143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s
[144/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s
[145/155] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s
[146/155] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s
[147/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s
[148/155] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s
[149/155] Installing redhat-rpm-config- 100% | 92.8 MiB/s | 190.1 KiB | 00m00s
[150/155] Installing rpm-build-0:4.20.0 100% | 94.9 MiB/s | 194.5 KiB | 00m00s
[151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s
[152/155] Installing util-linux-0:2.40. 100% | 175.4 MiB/s | 3.7 MiB | 00m00s
[153/155] Installing authselect-0:1.5.0 100% | 79.1 MiB/s | 161.9 KiB | 00m00s
[154/155] Installing which-0:2.21-42.fc 100% | 80.5 MiB/s | 82.4 KiB | 00m00s
[155/155] Installing info-0:7.1-3.fc41. 100% | 467.3 KiB/s | 362.2 KiB | 00m01s
Warning: skipped OpenPGP checks for 18 packages from repository: copr_base
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-3.fc41.x86_64
alternatives-1.31-1.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.x86_64
authselect-1.5.0-8.fc41.x86_64
authselect-libs-1.5.0-8.fc41.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.32-1.fc41.x86_64
binutils-2.43.1-5.fc41.x86_64
build-reproducibility-srpm-macros-0.3.6-3.fc41.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.69_v8.0.401-1.0.fc41.noarch
coreutils-9.5-11.fc41.x86_64
coreutils-common-9.5-11.fc41.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20241029-1.git8baf557.fc41.noarch
curl-8.9.1-2.fc41.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.1-2.fc41.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-8.fc41.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-13.fc41.noarch
elfutils-0.192-7.fc41.x86_64
elfutils-debuginfod-client-0.192-7.fc41.x86_64
elfutils-default-yama-scope-0.192-7.fc41.noarch
elfutils-libelf-0.192-7.fc41.x86_64
elfutils-libs-0.192-7.fc41.x86_64
fedora-gpg-keys-41-1.noarch
fedora-release-41-29.noarch
fedora-release-common-41-29.noarch
fedora-release-identity-basic-41-29.noarch
fedora-repos-41-1.noarch
file-5.45-8.fc41.x86_64
file-libs-5.45-8.fc41.x86_64
filesystem-3.18-23.fc41.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.2-3.fc41.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.40-17.fc41.x86_64
glibc-common-2.40-17.fc41.x86_64
glibc-gconv-extra-2.40-17.fc41.x86_64
glibc-minimal-langpack-2.40-17.fc41.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1-3.fc41.x86_64
jansson-2.13.1-10.fc41.x86_64
json-c-0.17-4.fc41.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-3.fc41.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.4-4.fc41.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc41.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.70-4.fc41.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-6.fc41.x86_64
libcurl-8.9.1-2.fc41.x86_64
libeconf-0.6.2-3.fc41.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-8.fc41.x86_64
libffi-3.4.6-3.fc41.x86_64
libgcc-14.2.1-3.fc41.x86_64
libgomp-14.2.1-3.fc41.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-8.fc41.x86_64
libnghttp2-1.62.1-2.fc41.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc41.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.7-7.fc41.x86_64
libsemanage-3.7-4.fc41.x86_64
libsepol-3.7-2.fc41.x86_64
libsmartcols-2.40.2-8.fc41.x86_64
libssh-0.10.6-8.fc41.x86_64
libssh-config-0.10.6-8.fc41.noarch
libstdc++-14.2.1-3.fc41.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.6-1.fc41.x86_64
libtool-ltdl-2.4.7-12.fc41.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.2-8.fc41.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-12.fc41.x86_64
libxml2-2.12.9-1.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.6-6.fc41.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-6.fc41.x86_64
openssl-libs-3.2.2-9.fc41.x86_64
p11-kit-0.25.5-3.fc41.x86_64
p11-kit-trust-0.25.5-3.fc41.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-7.fc41.x86_64
pam-libs-1.6.1-7.fc41.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc41.x86_64
pkgconf-m4-2.3.0-1.fc41.noarch
pkgconf-pkg-config-2.3.0-1.fc41.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.3-1.fc41.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc41.noarch
qt6-srpm-macros-6.8.1-4.fc41.noarch
readline-8.2-10.fc41.x86_64
redhat-rpm-config-293-1.fc41.noarch
rpm-4.20.0-3.fc41.x86_64
rpm-build-4.20.0-3.fc41.x86_64
rpm-build-libs-4.20.0-3.fc41.x86_64
rpm-libs-4.20.0-3.fc41.x86_64
rpm-sequoia-1.7.0-3.fc41.x86_64
rust-srpm-macros-26.3-3.fc41.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.15.1-12.fc41.x86_64
sqlite-libs-3.46.1-1.fc41.x86_64
systemd-libs-256.10-1.fc41.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-64.fc41.x86_64
util-linux-2.40.2-8.fc41.x86_64
util-linux-core-2.40.2-8.fc41.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-4.fc41.x86_64
xz-5.6.2-2.fc41.x86_64
xz-libs-5.6.2-2.fc41.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.1.7-3.fc41.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1735084800
Wrote: /builddir/build/SRPMS/ProDy-2.4.1-9.fc41.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1735152518.492234/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-19hhrzw5/ProDy/ProDy.spec) Config(child) 0 minutes 16 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-9.fc41.src.rpm) Config(fedora-41-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1735152518.492234/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1735152518.492234/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1735152518.492234/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.20.0-1.fc41.x86_64
rpm-sequoia-1.7.0-3.fc41.x86_64
dnf5-5.2.8.1-2.fc41.x86_64
dnf5-plugins-5.2.8.1-2.fc41.x86_64
Finish: chroot init
Start: build phase for ProDy-2.4.1-9.fc41.src.rpm
Start: build setup for ProDy-2.4.1-9.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1735084800
Wrote: /builddir/build/SRPMS/ProDy-2.4.1-9.fc41.src.rpm
Updating and loading repositories:
fedora 100% | 105.5 KiB/s | 30.8 KiB | 00m00s
updates 100% | 267.8 KiB/s | 30.5 KiB | 00m00s
Copr repository 100% | 128.1 KiB/s | 1.5 KiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing:
gcc x86_64 14.2.1-3.fc41 fedora 104.3 MiB
gcc-c++ x86_64 14.2.1-3.fc41 fedora 38.2 MiB
python3-biopython x86_64 1.84-4.fc41 copr_base 30.0 MiB
python3-devel x86_64 3.13.1-2.fc41 updates 1.8 MiB
python3-matplotlib x86_64 3.9.4-1.fc41 updates 21.1 MiB
python3-nose noarch 1.3.7-61.fc41 copr_base 1.2 MiB
python3-numpy x86_64 1:2.2.1-1.fc41 copr_base 41.1 MiB
python3-scipy x86_64 1.14.1-2.fc41 copr_base 66.9 MiB
python3-setuptools noarch 74.1.3-4.fc41 copr_base 8.4 MiB
python3-urllib3 noarch 2.3.0-1.fc41 copr_base 1.0 MiB
Installing dependencies:
abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB
annobin-docs noarch 12.69-1.fc41 fedora 97.7 KiB
annobin-plugin-gcc x86_64 12.69-1.fc41 fedora 985.0 KiB
cairo x86_64 1.18.2-2.fc41 updates 1.7 MiB
cpp x86_64 14.2.1-3.fc41 fedora 35.0 MiB
default-fonts-core-sans noarch 4.1-2.fc41 fedora 11.9 KiB
dejavu-sans-fonts noarch 2.37-24.fc41 fedora 5.5 MiB
expat x86_64 2.6.4-1.fc41 updates 292.9 KiB
flex x86_64 2.6.4-18.fc41 fedora 805.4 KiB
flexiblas x86_64 3.4.4-3.fc41 fedora 48.5 KiB
flexiblas-netlib x86_64 3.4.4-3.fc41 fedora 10.7 MiB
flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 fedora 43.3 KiB
fontconfig x86_64 2.15.0-8.fc41 fedora 791.9 KiB
fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B
freetype x86_64 2.13.3-1.fc41 fedora 850.5 KiB
fribidi x86_64 1.0.15-2.fc41 fedora 368.4 KiB
gcc-plugin-annobin x86_64 14.2.1-3.fc41 fedora 61.1 KiB
glib2 x86_64 2.82.2-1.fc41 updates 14.7 MiB
glibc-devel x86_64 2.40-17.fc41 updates 2.3 MiB
gnutls x86_64 3.8.6-7.fc41 fedora 3.2 MiB
google-noto-fonts-common noarch 20240701-2.fc41 fedora 17.5 KiB
google-noto-sans-vf-fonts noarch 20240701-2.fc41 fedora 1.2 MiB
graphite2 x86_64 1.3.14-16.fc41 fedora 192.0 KiB
harfbuzz x86_64 9.0.0-3.fc41 fedora 2.6 MiB
jbigkit-libs x86_64 2.1-30.fc41 fedora 117.6 KiB
kernel-headers x86_64 6.12.4-200.fc41 updates 6.4 MiB
lcms2 x86_64 2.16-4.fc41 fedora 424.9 KiB
libX11 x86_64 1.8.10-2.fc41 fedora 1.3 MiB
libX11-common noarch 1.8.10-2.fc41 fedora 1.1 MiB
libXau x86_64 1.0.11-7.fc41 fedora 66.9 KiB
libXext x86_64 1.3.6-2.fc41 fedora 90.1 KiB
libXft x86_64 2.3.8-7.fc41 fedora 164.5 KiB
libXrender x86_64 0.9.11-7.fc41 fedora 50.1 KiB
libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB
libgfortran x86_64 14.2.1-3.fc41 fedora 3.0 MiB
libimagequant x86_64 4.0.3-5.fc41 fedora 666.7 KiB
libjpeg-turbo x86_64 3.0.2-3.fc41 fedora 776.9 KiB
liblerc x86_64 4.0.0-7.fc41 fedora 607.5 KiB
libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB
libpng x86_64 2:1.6.40-4.fc41 fedora 245.8 KiB
libqhull_r x86_64 1:8.0.2-5.fc41 fedora 483.4 KiB
libquadmath x86_64 14.2.1-3.fc41 fedora 325.9 KiB
libraqm x86_64 0.8.0-8.fc41 fedora 28.6 KiB
libstdc++-devel x86_64 14.2.1-3.fc41 fedora 15.4 MiB
libtiff x86_64 4.6.0-6.fc41 fedora 606.0 KiB
libwebp x86_64 1.5.0-1.fc41 updates 814.4 KiB
libxcb x86_64 1.17.0-3.fc41 fedora 1.2 MiB
libxcrypt-devel x86_64 4.4.36-12.fc41 updates 30.5 KiB
m4 x86_64 1.4.19-10.fc41 fedora 592.9 KiB
make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB
mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB
nettle x86_64 3.10-3.fc41 fedora 793.0 KiB
openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB
openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB
openjpeg x86_64 2.5.3-1.fc41 updates 451.4 KiB
pixman x86_64 0.44.2-1.fc41 updates 664.5 KiB
pyproject-rpm-macros noarch 1.16.3-1.fc41 updates 113.7 KiB
python-pip-wheel noarch 24.3.1-1.fc41 copr_base 1.2 MiB
python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB
python3 x86_64 3.13.1-2.fc41 updates 30.6 KiB
python3-cairo x86_64 1.25.1-5.fc41 fedora 492.5 KiB
python3-charset-normalizer noarch 3.4.0-1.fc41 copr_base 322.1 KiB
python3-contourpy x86_64 1.3.1-1.fc41 updates 822.6 KiB
python3-cycler noarch 0.11.0-14.fc41 copr_base 37.6 KiB
python3-dateutil noarch 1:2.8.2-16.fc41 fedora 879.2 KiB
python3-fonttools x86_64 4.55.2-1.fc41 copr_base 18.2 MiB
python3-idna noarch 3.10-1.fc41 copr_base 629.0 KiB
python3-kiwisolver x86_64 1.4.8-1.fc41 copr_base 153.3 KiB
python3-libs x86_64 3.13.1-2.fc41 updates 40.2 MiB
python3-matplotlib-data noarch 3.9.4-1.fc41 updates 741.5 KiB
python3-matplotlib-data-fonts noarch 3.9.4-1.fc41 updates 7.9 MiB
python3-matplotlib-tk x86_64 3.9.4-1.fc41 updates 257.3 KiB
python3-numpy-f2py x86_64 1:2.2.1-1.fc41 copr_base 2.0 MiB
python3-olefile noarch 0.47-5.fc41 fedora 340.4 KiB
python3-packaging noarch 24.2-2.fc41 copr_base 558.2 KiB
python3-pillow x86_64 11.0.0-1.fc41 copr_base 4.0 MiB
python3-pillow-tk x86_64 11.0.0-1.fc41 copr_base 73.4 KiB
python3-platformdirs noarch 4.2.2-3.fc41 copr_base 168.4 KiB
python3-pooch noarch 1.8.2-3.fc41 fedora 625.5 KiB
python3-pyparsing noarch 3.1.2-7.fc41 fedora 1.0 MiB
python3-requests noarch 2.32.3-3.fc41 copr_base 485.9 KiB
python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB
python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB
python3-six noarch 1.16.0-25.fc41 copr_base 118.6 KiB
python3-tkinter x86_64 3.13.1-2.fc41 updates 2.0 MiB
tcl x86_64 1:8.6.14-2.fc41 fedora 4.2 MiB
tk x86_64 1:8.6.14-2.fc41 fedora 3.6 MiB
tzdata noarch 2024a-9.fc41 fedora 1.7 MiB
xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB
Transaction Summary:
Installing: 99 packages
Total size of inbound packages is 159 MiB. Need to download 159 MiB.
After this operation, 566 MiB extra will be used (install 566 MiB, remove 0 B).
[ 1/99] gcc-c++-0:14.2.1-3.fc41.x86_64 100% | 244.4 MiB/s | 14.2 MiB | 00m00s
[ 2/99] python3-devel-0:3.13.1-2.fc41.x 100% | 65.6 MiB/s | 403.1 KiB | 00m00s
[ 3/99] python3-biopython-0:1.84-4.fc41 100% | 137.6 MiB/s | 11.6 MiB | 00m00s
[ 4/99] python3-matplotlib-0:3.9.4-1.fc 100% | 170.7 MiB/s | 4.6 MiB | 00m00s
[ 5/99] python3-nose-0:1.3.7-61.fc41.no 100% | 40.0 MiB/s | 327.9 KiB | 00m00s
[ 6/99] gcc-0:14.2.1-3.fc41.x86_64 100% | 258.4 MiB/s | 36.9 MiB | 00m00s
[ 7/99] python3-numpy-1:2.2.1-1.fc41.x8 100% | 124.0 MiB/s | 7.7 MiB | 00m00s
[ 8/99] python3-setuptools-0:74.1.3-4.f 100% | 78.8 MiB/s | 1.8 MiB | 00m00s
[ 9/99] python3-urllib3-0:2.3.0-1.fc41. 100% | 17.2 MiB/s | 264.7 KiB | 00m00s
[10/99] libmpc-0:1.3.1-6.fc41.x86_64 100% | 23.2 MiB/s | 71.1 KiB | 00m00s
[11/99] make-1:4.4.1-8.fc41.x86_64 100% | 95.4 MiB/s | 586.1 KiB | 00m00s
[12/99] python3-scipy-0:1.14.1-2.fc41.x 100% | 157.4 MiB/s | 16.5 MiB | 00m00s
[13/99] flex-0:2.6.4-18.fc41.x86_64 100% | 15.3 MiB/s | 298.2 KiB | 00m00s
[14/99] cpp-0:14.2.1-3.fc41.x86_64 100% | 243.8 MiB/s | 11.9 MiB | 00m00s
[15/99] dejavu-sans-fonts-0:2.37-24.fc4 100% | 63.1 MiB/s | 1.3 MiB | 00m00s
[16/99] python3-libs-0:3.13.1-2.fc41.x8 100% | 228.9 MiB/s | 8.9 MiB | 00m00s
[17/99] freetype-0:2.13.3-1.fc41.x86_64 100% | 19.0 MiB/s | 409.2 KiB | 00m00s
[18/99] libqhull_r-1:8.0.2-5.fc41.x86_6 100% | 10.9 MiB/s | 201.8 KiB | 00m00s
[19/99] python3-dateutil-1:2.8.2-16.fc4 100% | 87.8 MiB/s | 359.7 KiB | 00m00s
[20/99] python3-pyparsing-0:3.1.2-7.fc4 100% | 67.7 MiB/s | 277.4 KiB | 00m00s
[21/99] python3-matplotlib-data-0:3.9.4 100% | 102.6 MiB/s | 525.1 KiB | 00m00s
[22/99] python3-matplotlib-tk-0:3.9.4-1 100% | 34.8 MiB/s | 106.8 KiB | 00m00s
[23/99] python3-numpy-f2py-1:2.2.1-1.fc 100% | 109.5 MiB/s | 448.6 KiB | 00m00s
[24/99] libgfortran-0:14.2.1-3.fc41.x86 100% | 131.0 MiB/s | 939.1 KiB | 00m00s
[25/99] python3-pooch-0:1.8.2-3.fc41.no 100% | 19.3 MiB/s | 138.6 KiB | 00m00s
[26/99] flexiblas-netlib-0:3.4.4-3.fc41 100% | 189.3 MiB/s | 3.2 MiB | 00m00s
[27/99] m4-0:1.4.19-10.fc41.x86_64 100% | 37.3 MiB/s | 305.4 KiB | 00m00s
[28/99] libb2-0:0.98.1-12.fc41.x86_64 100% | 6.3 MiB/s | 25.7 KiB | 00m00s
[29/99] mpdecimal-0:2.5.1-16.fc41.x86_6 100% | 43.4 MiB/s | 89.0 KiB | 00m00s
[30/99] fonts-filesystem-1:2.0.5-17.fc4 100% | 4.1 MiB/s | 8.5 KiB | 00m00s
[31/99] tzdata-0:2024a-9.fc41.noarch 100% | 139.6 MiB/s | 714.7 KiB | 00m00s
[32/99] libpng-2:1.6.40-4.fc41.x86_64 100% | 29.4 MiB/s | 120.3 KiB | 00m00s
[33/99] flexiblas-0:3.4.4-3.fc41.x86_64 100% | 12.3 MiB/s | 25.3 KiB | 00m00s
[34/99] harfbuzz-0:9.0.0-3.fc41.x86_64 100% | 83.8 MiB/s | 1.0 MiB | 00m00s
[35/99] flexiblas-openblas-openmp-0:3.4 100% | 2.8 MiB/s | 17.2 KiB | 00m00s
[36/99] python3-matplotlib-data-fonts-0 100% | 146.3 MiB/s | 2.3 MiB | 00m00s
[37/99] libquadmath-0:14.2.1-3.fc41.x86 100% | 28.2 MiB/s | 202.5 KiB | 00m00s
[38/99] graphite2-0:1.3.14-16.fc41.x86_ 100% | 18.6 MiB/s | 95.1 KiB | 00m00s
[39/99] python3-0:3.13.1-2.fc41.x86_64 100% | 13.1 MiB/s | 26.8 KiB | 00m00s
[40/99] python3-idna-0:3.10-1.fc41.noar 100% | 36.5 MiB/s | 112.1 KiB | 00m00s
[41/99] python3-pillow-tk-0:11.0.0-1.fc 100% | 15.3 MiB/s | 31.3 KiB | 00m00s
[42/99] python3-tkinter-0:3.13.1-2.fc41 100% | 52.7 MiB/s | 377.7 KiB | 00m00s
[43/99] tcl-1:8.6.14-2.fc41.x86_64 100% | 84.8 MiB/s | 1.1 MiB | 00m00s
[44/99] fontconfig-0:2.15.0-8.fc41.x86_ 100% | 52.7 MiB/s | 269.9 KiB | 00m00s
[45/99] openblas-openmp-0:0.3.26-5.fc41 100% | 168.8 MiB/s | 5.1 MiB | 00m00s
[46/99] tk-1:8.6.14-2.fc41.x86_64 100% | 80.9 MiB/s | 1.6 MiB | 00m00s
[47/99] libXft-0:2.3.8-7.fc41.x86_64 100% | 35.3 MiB/s | 72.3 KiB | 00m00s
[48/99] libX11-0:1.8.10-2.fc41.x86_64 100% | 70.5 MiB/s | 649.9 KiB | 00m00s
[49/99] default-fonts-core-sans-0:4.1-2 100% | 15.2 MiB/s | 31.1 KiB | 00m00s
[50/99] xml-common-0:0.6.3-65.fc41.noar 100% | 15.3 MiB/s | 31.2 KiB | 00m00s
[51/99] libXrender-0:0.9.11-7.fc41.x86_ 100% | 13.4 MiB/s | 27.5 KiB | 00m00s
[52/99] libX11-common-0:1.8.10-2.fc41.n 100% | 42.9 MiB/s | 175.8 KiB | 00m00s
[53/99] libxcb-0:1.17.0-3.fc41.x86_64 100% | 47.0 MiB/s | 240.7 KiB | 00m00s
[54/99] abattis-cantarell-vf-fonts-0:0. 100% | 29.4 MiB/s | 120.2 KiB | 00m00s
[55/99] google-noto-sans-vf-fonts-0:202 100% | 116.0 MiB/s | 594.1 KiB | 00m00s
[56/99] libXau-0:1.0.11-7.fc41.x86_64 100% | 7.8 MiB/s | 31.9 KiB | 00m00s
[57/99] google-noto-fonts-common-0:2024 100% | 8.8 MiB/s | 18.0 KiB | 00m00s
[58/99] python3-cairo-0:1.25.1-5.fc41.x 100% | 40.5 MiB/s | 124.6 KiB | 00m00s
[59/99] python3-cycler-0:0.11.0-14.fc41 100% | 10.7 MiB/s | 21.8 KiB | 00m00s
[60/99] python3-kiwisolver-0:1.4.8-1.fc 100% | 20.9 MiB/s | 64.2 KiB | 00m00s
[61/99] python3-contourpy-0:1.3.1-1.fc4 100% | 24.8 MiB/s | 278.8 KiB | 00m00s
[62/99] python3-packaging-0:24.2-2.fc41 100% | 28.1 MiB/s | 144.0 KiB | 00m00s
[63/99] python3-fonttools-0:4.55.2-1.fc 100% | 237.9 MiB/s | 2.9 MiB | 00m00s
[64/99] lcms2-0:2.16-4.fc41.x86_64 100% | 44.0 MiB/s | 180.3 KiB | 00m00s
[65/99] python3-pillow-0:11.0.0-1.fc41. 100% | 155.2 MiB/s | 953.6 KiB | 00m00s
[66/99] libjpeg-turbo-0:3.0.2-3.fc41.x8 100% | 74.0 MiB/s | 227.3 KiB | 00m00s
[67/99] libimagequant-0:4.0.3-5.fc41.x8 100% | 58.8 MiB/s | 301.2 KiB | 00m00s
[68/99] libtiff-0:4.6.0-6.fc41.x86_64 100% | 69.0 MiB/s | 212.0 KiB | 00m00s
[69/99] python3-olefile-0:0.47-5.fc41.n 100% | 24.3 MiB/s | 74.6 KiB | 00m00s
[70/99] fribidi-0:1.0.15-2.fc41.x86_64 100% | 45.0 MiB/s | 92.2 KiB | 00m00s
[71/99] jbigkit-libs-0:2.1-30.fc41.x86_ 100% | 26.0 MiB/s | 53.3 KiB | 00m00s
[72/99] liblerc-0:4.0.0-7.fc41.x86_64 100% | 51.4 MiB/s | 210.3 KiB | 00m00s
[73/99] libraqm-0:0.8.0-8.fc41.x86_64 100% | 1.5 MiB/s | 19.9 KiB | 00m00s
[74/99] expat-0:2.6.4-1.fc41.x86_64 100% | 28.0 MiB/s | 114.5 KiB | 00m00s
[75/99] python3-platformdirs-0:4.2.2-3. 100% | 13.5 MiB/s | 41.5 KiB | 00m00s
[76/99] python3-requests-0:2.32.3-3.fc4 100% | 36.5 MiB/s | 149.6 KiB | 00m00s
[77/99] python-pip-wheel-0:24.3.1-1.fc4 100% | 150.6 MiB/s | 1.2 MiB | 00m00s
[78/99] python3-six-0:1.16.0-25.fc41.no 100% | 10.2 MiB/s | 41.9 KiB | 00m00s
[79/99] cairo-0:1.18.2-2.fc41.x86_64 100% | 168.7 MiB/s | 690.9 KiB | 00m00s
[80/99] openblas-0:0.3.26-5.fc41.x86_64 100% | 12.6 MiB/s | 38.7 KiB | 00m00s
[81/99] libXext-0:1.3.6-2.fc41.x86_64 100% | 9.5 MiB/s | 39.1 KiB | 00m00s
[82/99] libwebp-0:1.5.0-1.fc41.x86_64 100% | 68.3 MiB/s | 279.6 KiB | 00m00s
[83/99] gnutls-0:3.8.6-7.fc41.x86_64 100% | 138.7 MiB/s | 1.1 MiB | 00m00s
[84/99] nettle-0:3.10-3.fc41.x86_64 100% | 59.8 MiB/s | 428.5 KiB | 00m00s
[85/99] glib2-0:2.82.2-1.fc41.x86_64 100% | 138.1 MiB/s | 3.0 MiB | 00m00s
[86/99] glibc-devel-0:2.40-17.fc41.x86_ 100% | 47.1 MiB/s | 626.6 KiB | 00m00s
[87/99] python3-charset-normalizer-0:3. 100% | 49.7 MiB/s | 101.8 KiB | 00m00s
[88/99] libstdc++-devel-0:14.2.1-3.fc41 100% | 131.1 MiB/s | 2.8 MiB | 00m00s
[89/99] openjpeg-0:2.5.3-1.fc41.x86_64 100% | 30.1 MiB/s | 184.7 KiB | 00m00s
[90/99] kernel-headers-0:6.12.4-200.fc4 100% | 204.2 MiB/s | 1.6 MiB | 00m00s
[91/99] libxcrypt-devel-0:4.4.36-12.fc4 100% | 9.1 MiB/s | 27.8 KiB | 00m00s
[92/99] pixman-0:0.44.2-1.fc41.x86_64 100% | 87.6 MiB/s | 269.1 KiB | 00m00s
[93/99] gcc-plugin-annobin-0:14.2.1-3.f 100% | 26.9 MiB/s | 55.1 KiB | 00m00s
[94/99] annobin-docs-0:12.69-1.fc41.noa 100% | 44.8 MiB/s | 91.8 KiB | 00m00s
[95/99] annobin-plugin-gcc-0:12.69-1.fc 100% | 158.0 MiB/s | 971.0 KiB | 00m00s
[96/99] python-rpm-macros-0:3.13-3.fc41 100% | 5.8 MiB/s | 17.7 KiB | 00m00s
[97/99] python3-rpm-generators-0:14-11. 100% | 14.3 MiB/s | 29.3 KiB | 00m00s
[98/99] python3-rpm-macros-0:3.13-3.fc4 100% | 4.1 MiB/s | 12.4 KiB | 00m00s
[99/99] pyproject-rpm-macros-0:1.16.3-1 100% | 876.1 KiB/s | 44.7 KiB | 00m00s
--------------------------------------------------------------------------------
[99/99] Total 100% | 233.9 MiB/s | 159.0 MiB | 00m01s
Running transaction
[ 1/101] Verify package files 100% | 202.0 B/s | 99.0 B | 00m00s
[ 2/101] Prepare transaction 100% | 1.2 KiB/s | 99.0 B | 00m00s
[ 3/101] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s
[ 4/101] Installing python-rpm-macros- 100% | 0.0 B/s | 22.8 KiB | 00m00s
[ 5/101] Installing libgfortran-0:14.2 100% | 434.9 MiB/s | 3.0 MiB | 00m00s
[ 6/101] Installing libmpc-0:1.3.1-6.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s
[ 7/101] Installing python3-rpm-macros 100% | 0.0 B/s | 6.7 KiB | 00m00s
[ 8/101] Installing python3-matplotlib 100% | 395.6 MiB/s | 7.9 MiB | 00m00s
[ 9/101] Installing python3-matplotlib 100% | 247.0 MiB/s | 758.7 KiB | 00m00s
[ 10/101] Installing libwebp-0:1.5.0-1. 100% | 266.5 MiB/s | 818.6 KiB | 00m00s
[ 11/101] Installing libjpeg-turbo-0:3. 100% | 380.2 MiB/s | 778.7 KiB | 00m00s
[ 12/101] Installing tcl-1:8.6.14-2.fc4 100% | 325.1 MiB/s | 4.2 MiB | 00m00s
[ 13/101] Installing libpng-2:1.6.40-4. 100% | 60.3 MiB/s | 247.1 KiB | 00m00s
[ 14/101] Installing tzdata-0:2024a-9.f 100% | 64.7 MiB/s | 1.9 MiB | 00m00s
[ 15/101] Installing pyproject-rpm-macr 100% | 113.0 MiB/s | 115.7 KiB | 00m00s
[ 16/101] Installing cpp-0:14.2.1-3.fc4 100% | 407.0 MiB/s | 35.0 MiB | 00m00s
[ 17/101] Installing dejavu-sans-fonts- 100% | 459.1 MiB/s | 5.5 MiB | 00m00s
[ 18/101] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB | 00m00s
[ 19/101] Installing annobin-docs-0:12. 100% | 0.0 B/s | 98.8 KiB | 00m00s
[ 20/101] Installing pixman-0:0.44.2-1. 100% | 162.5 MiB/s | 665.6 KiB | 00m00s
[ 21/101] Installing kernel-headers-0:6 100% | 227.4 MiB/s | 6.6 MiB | 00m00s
[ 22/101] Installing libxcrypt-devel-0: 100% | 16.0 MiB/s | 32.9 KiB | 00m00s
[ 23/101] Installing glibc-devel-0:2.40 100% | 193.7 MiB/s | 2.3 MiB | 00m00s
[ 24/101] Installing openjpeg-0:2.5.3-1 100% | 147.6 MiB/s | 453.3 KiB | 00m00s
[ 25/101] Installing libstdc++-devel-0: 100% | 398.9 MiB/s | 15.6 MiB | 00m00s
[ 26/101] Installing nettle-0:3.10-3.fc 100% | 259.2 MiB/s | 796.1 KiB | 00m00s
[ 27/101] Installing gnutls-0:3.8.6-7.f 100% | 358.2 MiB/s | 3.2 MiB | 00m00s
[ 28/101] Installing glib2-0:2.82.2-1.f 100% | 419.8 MiB/s | 14.7 MiB | 00m00s
[ 29/101] Installing openblas-0:0.3.26- 100% | 0.0 B/s | 97.8 KiB | 00m00s
[ 30/101] Installing openblas-openmp-0: 100% | 645.4 MiB/s | 39.4 MiB | 00m00s
[ 31/101] Installing python-pip-wheel-0 100% | 622.1 MiB/s | 1.2 MiB | 00m00s
[ 32/101] Installing expat-0:2.6.4-1.fc 100% | 288.1 MiB/s | 295.0 KiB | 00m00s
[ 33/101] Installing liblerc-0:4.0.0-7. 100% | 297.4 MiB/s | 609.0 KiB | 00m00s
[ 34/101] Installing jbigkit-libs-0:2.1 100% | 116.8 MiB/s | 119.6 KiB | 00m00s
[ 35/101] Installing libtiff-0:4.6.0-6. 100% | 297.0 MiB/s | 608.2 KiB | 00m00s
[ 36/101] Installing fribidi-0:1.0.15-2 100% | 362.2 MiB/s | 370.9 KiB | 00m00s
[ 37/101] Installing libimagequant-0:4. 100% | 326.3 MiB/s | 668.3 KiB | 00m00s
[ 38/101] Installing lcms2-0:2.16-4.fc4 100% | 208.3 MiB/s | 426.5 KiB | 00m00s
[ 39/101] Installing google-noto-fonts- 100% | 0.0 B/s | 18.3 KiB | 00m00s
[ 40/101] Installing google-noto-sans-v 100% | 312.2 MiB/s | 1.2 MiB | 00m00s
[ 41/101] Installing default-fonts-core 100% | 17.8 MiB/s | 18.2 KiB | 00m00s
[ 42/101] Installing libXau-0:1.0.11-7. 100% | 66.8 MiB/s | 68.4 KiB | 00m00s
[ 43/101] Installing libxcb-0:1.17.0-3. 100% | 237.6 MiB/s | 1.2 MiB | 00m00s
[ 44/101] Installing libX11-common-0:1. 100% | 169.6 MiB/s | 1.2 MiB | 00m00s
[ 45/101] Installing libX11-0:1.8.10-2. 100% | 427.2 MiB/s | 1.3 MiB | 00m00s
[ 46/101] Installing libXrender-0:0.9.1 100% | 0.0 B/s | 51.4 KiB | 00m00s
[ 47/101] Installing libXext-0:1.3.6-2. 100% | 17.8 MiB/s | 91.3 KiB | 00m00s
[ 48/101] Installing xml-common-0:0.6.3 100% | 79.2 MiB/s | 81.1 KiB | 00m00s
[ 49/101] Installing graphite2-0:1.3.14 100% | 189.6 MiB/s | 194.1 KiB | 00m00s
[ 50/101] Installing harfbuzz-0:9.0.0-3 100% | 331.3 MiB/s | 2.7 MiB | 00m00s
[ 51/101] Installing freetype-0:2.13.3- 100% | 277.4 MiB/s | 852.2 KiB | 00m00s
[ 52/101] Installing fontconfig-0:2.15. 100% | 792.1 KiB/s | 811.1 KiB | 00m01s
[ 53/101] Installing libXft-0:2.3.8-7.f 100% | 27.0 MiB/s | 166.0 KiB | 00m00s
[ 54/101] Installing tk-1:8.6.14-2.fc41 100% | 261.4 MiB/s | 3.7 MiB | 00m00s
[ 55/101] Installing cairo-0:1.18.2-2.f 100% | 345.9 MiB/s | 1.7 MiB | 00m00s
[ 56/101] Installing libraqm-0:0.8.0-8. 100% | 0.0 B/s | 29.7 KiB | 00m00s
[ 57/101] Installing libquadmath-0:14.2 100% | 319.4 MiB/s | 327.1 KiB | 00m00s
[ 58/101] Installing flexiblas-0:3.4.4- 100% | 0.0 B/s | 49.7 KiB | 00m00s
[ 59/101] Installing flexiblas-openblas 100% | 0.0 B/s | 44.1 KiB | 00m00s
[ 60/101] Installing flexiblas-netlib-0 100% | 395.0 MiB/s | 10.7 MiB | 00m00s
[ 61/101] Installing mpdecimal-0:2.5.1- 100% | 201.2 MiB/s | 206.0 KiB | 00m00s
[ 62/101] Installing libb2-0:0.98.1-12. 100% | 10.6 MiB/s | 43.3 KiB | 00m00s
[ 63/101] Installing python3-libs-0:3.1 100% | 350.0 MiB/s | 40.6 MiB | 00m00s
[ 64/101] Installing python3-0:3.13.1-2 100% | 31.6 MiB/s | 32.4 KiB | 00m00s
[ 65/101] Installing python3-packaging- 100% | 278.6 MiB/s | 570.5 KiB | 00m00s
[ 66/101] Installing python3-idna-0:3.1 100% | 310.2 MiB/s | 635.3 KiB | 00m00s
[ 67/101] Installing python3-tkinter-0: 100% | 329.6 MiB/s | 2.0 MiB | 00m00s
[ 68/101] Installing python3-urllib3-0: 100% | 255.7 MiB/s | 1.0 MiB | 00m00s
[ 69/101] Installing python3-rpm-genera 100% | 81.0 MiB/s | 82.9 KiB | 00m00s
[ 70/101] Installing python3-devel-0:3. 100% | 181.5 MiB/s | 1.8 MiB | 00m00s
[ 71/101] Installing python3-numpy-1:2. 100% | 405.9 MiB/s | 41.4 MiB | 00m00s
[ 72/101] Installing python3-numpy-f2py 100% | 190.0 MiB/s | 2.1 MiB | 00m00s
[ 73/101] Installing python3-contourpy- 100% | 163.2 MiB/s | 835.4 KiB | 00m00s
[ 74/101] Installing python3-setuptools 100% | 253.0 MiB/s | 8.6 MiB | 00m00s
[ 75/101] Installing python3-pyparsing- 100% | 329.6 MiB/s | 1.0 MiB | 00m00s
[ 76/101] Installing python3-cairo-0:1. 100% | 242.5 MiB/s | 496.6 KiB | 00m00s
[ 77/101] Installing python3-cycler-0:0 100% | 19.5 MiB/s | 39.8 KiB | 00m00s
[ 78/101] Installing python3-fonttools- 100% | 382.7 MiB/s | 18.4 MiB | 00m00s
[ 79/101] Installing python3-kiwisolver 100% | 153.5 MiB/s | 157.2 KiB | 00m00s
[ 80/101] Installing python3-olefile-0: 100% | 167.8 MiB/s | 343.6 KiB | 00m00s
[ 81/101] Installing python3-pillow-0:1 100% | 308.3 MiB/s | 4.0 MiB | 00m00s
[ 82/101] Installing python3-pillow-tk- 100% | 0.0 B/s | 75.2 KiB | 00m00s
[ 83/101] Installing python3-platformdi 100% | 170.8 MiB/s | 174.9 KiB | 00m00s
[ 84/101] Installing python3-six-0:1.16 100% | 118.1 MiB/s | 120.9 KiB | 00m00s
[ 85/101] Installing python3-dateutil-1 100% | 290.7 MiB/s | 892.9 KiB | 00m00s
[ 86/101] Installing python3-charset-no 100% | 162.1 MiB/s | 332.0 KiB | 00m00s
[ 87/101] Installing python3-requests-0 100% | 243.2 MiB/s | 498.0 KiB | 00m00s
[ 88/101] Installing python3-pooch-0:1. 100% | 208.5 MiB/s | 640.5 KiB | 00m00s
[ 89/101] Installing m4-0:1.4.19-10.fc4 100% | 195.1 MiB/s | 599.2 KiB | 00m00s
[ 90/101] Installing flex-0:2.6.4-18.fc 100% | 264.1 MiB/s | 811.4 KiB | 00m00s
[ 91/101] Installing libqhull_r-1:8.0.2 100% | 472.9 MiB/s | 484.2 KiB | 00m00s
[ 92/101] Installing python3-matplotlib 100% | 84.6 MiB/s | 259.9 KiB | 00m00s
[ 93/101] Installing python3-matplotlib 100% | 361.2 MiB/s | 21.3 MiB | 00m00s
[ 94/101] Installing make-1:4.4.1-8.fc4 100% | 300.0 MiB/s | 1.8 MiB | 00m00s
[ 95/101] Installing gcc-0:14.2.1-3.fc4 100% | 444.2 MiB/s | 104.4 MiB | 00m00s
[ 96/101] Installing gcc-c++-0:14.2.1-3 100% | 406.1 MiB/s | 38.2 MiB | 00m00s
[ 97/101] Installing annobin-plugin-gcc 100% | 74.1 MiB/s | 986.7 KiB | 00m00s
[ 98/101] Installing gcc-plugin-annobin 100% | 4.4 MiB/s | 62.6 KiB | 00m00s
[ 99/101] Installing python3-biopython- 100% | 360.9 MiB/s | 30.3 MiB | 00m00s
[100/101] Installing python3-scipy-0:1. 100% | 395.7 MiB/s | 67.3 MiB | 00m00s
[101/101] Installing python3-nose-0:1.3 100% | 7.4 MiB/s | 1.3 MiB | 00m00s
Warning: skipped OpenPGP checks for 19 packages from repository: copr_base
Complete!
Finish: build setup for ProDy-2.4.1-9.fc41.src.rpm
Start: rpmbuild ProDy-2.4.1-9.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1735084800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.kOYHNP
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ test -d /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.8sApoe
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ rm -rf ProDy-2.4.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd ProDy-2.4.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/Fix-rtbtools-to-permit-numpy-upgrade.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/eigh-evd-when-no-turbo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';'
+ find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nKPJDB
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd ProDy-2.4.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP'
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-313
creating build/lib.linux-x86_64-cpython-313/prody
copying prody/__init__.py -> build/lib.linux-x86_64-cpython-313/prody
creating build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/acceptor.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/angle.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/atom.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/atomgroup.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/atomic.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/atommap.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/bond.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/chain.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/crossterm.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/dihedral.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/donor.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/fields.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/flags.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/functions.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/hierview.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/improper.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/nbexclusion.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/pointer.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/residue.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/segment.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/select.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/selection.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
copying prody/atomic/subset.py -> build/lib.linux-x86_64-cpython-313/prody/atomic
creating build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/cath.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/dali.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/goa.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/pfam.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/quartataweb.py -> build/lib.linux-x86_64-cpython-313/prody/database
copying prody/database/uniprot.py -> build/lib.linux-x86_64-cpython-313/prody/database
creating build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/adaptive.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/analysis.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/anm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/bbenm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/bildfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/clustenm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/compare.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/editing.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/entropy.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/essa.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/exanm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/exgnm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/functions.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/gamma.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/gnm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/heatmapper.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/imanm.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/mechstiff.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/mode.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/modeset.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/nma.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/nmdfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/pca.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/perturb.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/plotting.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/rtb.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/sampling.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/signature.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
copying prody/dynamics/vmdfile.py -> build/lib.linux-x86_64-cpython-313/prody/dynamics
creating build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/conformation.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/ensemble.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/functions.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
copying prody/ensemble/pdbensemble.py -> build/lib.linux-x86_64-cpython-313/prody/ensemble
creating build/lib.linux-x86_64-cpython-313/prody/kdtree
copying prody/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/kdtree
copying prody/kdtree/kdtree.py -> build/lib.linux-x86_64-cpython-313/prody/kdtree
creating build/lib.linux-x86_64-cpython-313/prody/measure
copying prody/measure/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/measure
copying prody/measure/contacts.py -> build/lib.linux-x86_64-cpython-313/prody/measure
copying prody/measure/measure.py -> build/lib.linux-x86_64-cpython-313/prody/measure
copying prody/measure/transform.py -> build/lib.linux-x86_64-cpython-313/prody/measure
creating build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/blastpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/ciffile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/cifheader.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/compare.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/dssp.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/emdfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/fixer.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/functions.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/header.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/localpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/pdbclusters.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/pdbfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/starfile.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/stride.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/waterbridges.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
copying prody/proteins/wwpdb.py -> build/lib.linux-x86_64-cpython-313/prody/proteins
creating build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/analysis.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/msa.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/msafile.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/plotting.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
copying prody/sequence/sequence.py -> build/lib.linux-x86_64-cpython-313/prody/sequence
creating build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/dcdfile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/frame.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/psffile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/trajbase.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/trajectory.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
copying prody/trajectory/trajfile.py -> build/lib.linux-x86_64-cpython-313/prody/trajectory
creating build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/cluster.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/functions.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/hic.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/norm.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
copying prody/chromatin/straw.py -> build/lib.linux-x86_64-cpython-313/prody/chromatin
creating build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/bird.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/ccd.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/functions.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
copying prody/compounds/pdbligands.py -> build/lib.linux-x86_64-cpython-313/prody/compounds
creating build/lib.linux-x86_64-cpython-313/prody/domain_decomposition
copying prody/domain_decomposition/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/domain_decomposition
copying prody/domain_decomposition/spectrus.py -> build/lib.linux-x86_64-cpython-313/prody/domain_decomposition
creating build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/TreeConstruction.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/catchall.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/checkers.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/doctools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/drawtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/eigtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/laptools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/legacy.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/logger.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/misctools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/pathtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/seqtools.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
copying prody/utilities/settings.py -> build/lib.linux-x86_64-cpython-313/prody/utilities
creating build/lib.linux-x86_64-cpython-313/prody/apps
copying prody/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps
copying prody/apps/apptools.py -> build/lib.linux-x86_64-cpython-313/prody/apps
creating build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps
creating build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps
creating build/lib.linux-x86_64-cpython-313/prody/tests
copying prody/tests/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests
creating build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-x86_64-cpython-313/prody/tests/apps
creating build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_atomic.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_atommap.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_fragment.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_hierview.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_select.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
copying prody/tests/atomic/test_subset.py -> build/lib.linux-x86_64-cpython-313/prody/tests/atomic
creating build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
creating build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_editing.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_enms.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_pca.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_signature.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
copying prody/tests/dynamics/test_lda.py -> build/lib.linux-x86_64-cpython-313/prody/tests/dynamics
creating build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/test_functions.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-x86_64-cpython-313/prody/tests/ensemble
creating build/lib.linux-x86_64-cpython-313/prody/tests/kdtree
copying prody/tests/kdtree/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/kdtree
copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-x86_64-cpython-313/prody/tests/kdtree
creating build/lib.linux-x86_64-cpython-313/prody/tests/measure
copying prody/tests/measure/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure
copying prody/tests/measure/test_contacts.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure
copying prody/tests/measure/test_measure.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure
copying prody/tests/measure/test_transform.py -> build/lib.linux-x86_64-cpython-313/prody/tests/measure
creating build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_dssp.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_header.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_fixer.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
copying prody/tests/proteins/test_waterbridges.py -> build/lib.linux-x86_64-cpython-313/prody/tests/proteins
creating build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/test_analysis.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/test_msa.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/test_msafile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
copying prody/tests/sequence/test_sequence.py -> build/lib.linux-x86_64-cpython-313/prody/tests/sequence
creating build/lib.linux-x86_64-cpython-313/prody/tests/trajectory
copying prody/tests/trajectory/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory
copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory
copying prody/tests/trajectory/test_frame.py -> build/lib.linux-x86_64-cpython-313/prody/tests/trajectory
creating build/lib.linux-x86_64-cpython-313/prody/tests/utilities
copying prody/tests/utilities/__init__.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities
copying prody/tests/utilities/test_checkers.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities
copying prody/tests/utilities/test_misctools.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities
copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-x86_64-cpython-313/prody/tests/utilities
creating build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles
copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles
copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles
copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-x86_64-cpython-313/prody/tests/datafiles
running build_ext
building 'prody.dynamics.rtbtools' extension
creating build/temp.linux-x86_64-cpython-313
creating build/temp.linux-x86_64-cpython-313/prody
creating build/temp.linux-x86_64-cpython-313/prody/dynamics
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-x86_64-cpython-313/prody/dynamics/rtbtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/dynamics/rtbtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/dynamics/rtbtools.cpython-313-x86_64-linux-gnu.so
building 'prody.dynamics.smtools' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/dynamics/smtools.c -o build/temp.linux-x86_64-cpython-313/prody/dynamics/smtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/dynamics/smtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/dynamics/smtools.cpython-313-x86_64-linux-gnu.so
building 'prody.sequence.msatools' extension
creating build/temp.linux-x86_64-cpython-313/prody/sequence
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/msatools.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/msatools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/msatools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/msatools.cpython-313-x86_64-linux-gnu.so
building 'prody.sequence.msaio' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/msaio.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/msaio.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/msaio.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/msaio.cpython-313-x86_64-linux-gnu.so
building 'prody.sequence.seqtools' extension
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/sequence/seqtools.c -o build/temp.linux-x86_64-cpython-313/prody/sequence/seqtools.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/sequence/seqtools.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/sequence/seqtools.cpython-313-x86_64-linux-gnu.so
building 'prody.kdtree._CKDTree' extension
creating build/temp.linux-x86_64-cpython-313/prody/kdtree
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/kdtree/KDTree.c -o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTree.o
gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fcf-protection -fexceptions -fcf-protection -fexceptions -fcf-protection -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/kdtree/KDTreemodule.c -o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTreemodule.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTree.o build/temp.linux-x86_64-cpython-313/prody/kdtree/KDTreemodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/kdtree/_CKDTree.cpython-313-x86_64-linux-gnu.so
building 'prody.proteins.ccealign' extension
creating build/temp.linux-x86_64-cpython-313/prody/proteins
creating build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Iprody/utilities/tnt -I/usr/include/python3.13 -c prody/proteins/ccealign/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign/ccealignmodule.o
In file included from prody/utilities/tnt/tnt.h:41,
from prody/proteins/ccealign/ccealignmodule.h:43,
from prody/proteins/ccealign/ccealignmodule.cpp:38:
In member function ‘TNT::Array1D<double>::set_(double*, double*, double const&)’,
inlined from ‘TNT::Array1D<double>::Array1D(int, double const&)’ at prody/utilities/tnt/tnt_array1d.h:118:6,
inlined from ‘findBest(cePoint*, cePoint*, afp**, int, int, int)’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26:
prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
260 | *p = a;
| ~~~^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-313/prody/proteins/ccealign/ccealignmodule.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-313/prody/proteins/ccealign.cpython-313-x86_64-linux-gnu.so
In member function ‘set_’,
inlined from ‘__ct ’ at prody/utilities/tnt/tnt_array1d.h:118:6,
inlined from ‘findBest’ at prody/proteins/ccealign/ccealignmodule.cpp:630:26:
prody/utilities/tnt/tnt_array1d.h:260:20: warning: ‘__builtin_memset’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
260 | *p = a;
| ^
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.CmjjCY
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ '[' /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
++ dirname /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build
+ mkdir /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd ProDy-2.4.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT --prefix /usr
running install
/usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
Follow the current Python packaging guidelines when building
Python RPM packages.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
********************************************************************************
!!
self.initialize_options()
running install_lib
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody
copying build/lib.linux-x86_64-cpython-313/prody/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/acceptor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/angle.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/atom.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/atomgroup.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/bond.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/chain.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/crossterm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/dihedral.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/donor.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/fields.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/flags.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/improper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/nbexclusion.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/pointer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/residue.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/segment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/selection.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
copying build/lib.linux-x86_64-cpython-313/prody/atomic/subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/cath.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/dali.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/goa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/pfam.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/quartataweb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
copying build/lib.linux-x86_64-cpython-313/prody/database/uniprot.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/adaptive.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/bbenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/bildfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/entropy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/essa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/exanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/exgnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/gamma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/heatmapper.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/imanm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/mechstiff.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/mode.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/modeset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/nma.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/nmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/perturb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/rtb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/sampling.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/vmdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/rtbtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/dynamics/smtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/ensemble/pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/kdtree/kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/kdtree/_CKDTree.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
copying build/lib.linux-x86_64-cpython-313/prody/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
copying build/lib.linux-x86_64-cpython-313/prody/measure/contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
copying build/lib.linux-x86_64-cpython-313/prody/measure/measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
copying build/lib.linux-x86_64-cpython-313/prody/measure/transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/blastpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/cifheader.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/compare.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/emdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/pdbclusters.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/starfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/stride.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
copying build/lib.linux-x86_64-cpython-313/prody/proteins/ccealign.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/plotting.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/msatools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/msaio.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
copying build/lib.linux-x86_64-cpython-313/prody/sequence/seqtools.cpython-313-x86_64-linux-gnu.so -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/psffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajbase.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajectory.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/trajectory/trajfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/cluster.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/hic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/norm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
copying build/lib.linux-x86_64-cpython-313/prody/chromatin/straw.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/bird.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/ccd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
copying build/lib.linux-x86_64-cpython-313/prody/compounds/pdbligands.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition
copying build/lib.linux-x86_64-cpython-313/prody/domain_decomposition/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition
copying build/lib.linux-x86_64-cpython-313/prody/domain_decomposition/spectrus.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/TreeConstruction.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/catchall.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/doctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/drawtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/eigtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/laptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/legacy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/logger.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/seqtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
copying build/lib.linux-x86_64-cpython-313/prody/utilities/settings.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles/mod_res_map.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/utilities/datafiles/saxs_water.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/datafiles
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/apptools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/nmaoptions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_align.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_biomol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_blast.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_clustenm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_eda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_energy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/prody_apps/prody_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_coevol.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_conserv.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_fetch.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_filter.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_merge.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_occupancy.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_rankorder.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_refine.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
copying build/lib.linux-x86_64-cpython-313/prody/apps/evol_apps/evol_search.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests
copying build/lib.linux-x86_64-cpython-313/prody/tests/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_anm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_catdcd.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_examples.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_gnm.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
copying build/lib.linux-x86_64-cpython-313/prody/tests/apps/test_prody_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_atomic.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_atommap.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_fragment.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_hierview.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_select.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
copying build/lib.linux-x86_64-cpython-313/prody/tests/atomic/test_subset.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ejg.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ejg_oneatom.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1r19_dssp.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ubi.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb1ubi_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2gb1_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2k39_ca.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2k39_truncated.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb2nwl-opm.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3hsy.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3mht.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3o21.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb3p3w.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb4v8r_h36.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb4v8r_hex.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pdbRTER.pdb -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/commute1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/hit1ubi.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot_di.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot_sca.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_evalues.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_vectors.dat -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/anm1ubi_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/exanm2nwl_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/pca2k39_cov.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/rtb2gb1_hessian.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/rtb2gb1_project.coo -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/dcd2k39_truncated.dcd -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/xmlSTI.xml -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.fasta -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.slx -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/msa_Cys_knot.sth -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/mmcif_6yfy.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
copying build/lib.linux-x86_64-cpython-313/prody/tests/datafiles/mmcif_6zu5.cif -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_editing.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_enms.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_pca.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_signature.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
copying build/lib.linux-x86_64-cpython-313/prody/tests/dynamics/test_lda.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_conformation.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_ensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_functions.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
copying build/lib.linux-x86_64-cpython-313/prody/tests/ensemble/test_pdbensemble.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/tests/kdtree/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree
copying build/lib.linux-x86_64-cpython-313/prody/tests/kdtree/test_kdtree.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_contacts.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_measure.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
copying build/lib.linux-x86_64-cpython-313/prody/tests/measure/test_transform.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_ciffile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_dssp.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_header.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_localpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_pdbfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_wwpdb.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_fixer.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
copying build/lib.linux-x86_64-cpython-313/prody/tests/proteins/test_waterbridges.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_analysis.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_msa.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_msafile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
copying build/lib.linux-x86_64-cpython-313/prody/tests/sequence/test_sequence.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/test_dcdfile.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory
copying build/lib.linux-x86_64-cpython-313/prody/tests/trajectory/test_frame.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory
creating /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/__init__.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_checkers.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_misctools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
copying build/lib.linux-x86_64-cpython-313/prody/tests/utilities/test_pathtools.py -> /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/acceptor.py to acceptor.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/angle.py to angle.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atom.py to atom.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomgroup.py to atomgroup.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atomic.py to atomic.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/atommap.py to atommap.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/bond.py to bond.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/chain.py to chain.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/crossterm.py to crossterm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/dihedral.py to dihedral.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/donor.py to donor.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/fields.py to fields.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/flags.py to flags.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/hierview.py to hierview.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/improper.py to improper.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/nbexclusion.py to nbexclusion.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/pointer.py to pointer.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/residue.py to residue.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/segment.py to segment.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/select.py to select.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/selection.py to selection.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/subset.py to subset.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/cath.py to cath.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/dali.py to dali.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/goa.py to goa.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/pfam.py to pfam.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/quartataweb.py to quartataweb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/uniprot.py to uniprot.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/adaptive.py to adaptive.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/analysis.py to analysis.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/anm.py to anm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bbenm.py to bbenm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/bildfile.py to bildfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/clustenm.py to clustenm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/compare.py to compare.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/editing.py to editing.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/entropy.py to entropy.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/essa.py to essa.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exanm.py to exanm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/exgnm.py to exgnm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gamma.py to gamma.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/gnm.py to gnm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/heatmapper.py to heatmapper.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/imanm.py to imanm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mechstiff.py to mechstiff.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/mode.py to mode.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/modeset.py to modeset.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nma.py to nma.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/nmdfile.py to nmdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py to pca.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/perturb.py to perturb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/plotting.py to plotting.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/rtb.py to rtb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/sampling.py to sampling.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/signature.py to signature.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/vmdfile.py to vmdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/conformation.py to conformation.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/ensemble.py to ensemble.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/pdbensemble.py to pdbensemble.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/kdtree.py to kdtree.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/contacts.py to contacts.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/measure.py to measure.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/measure/transform.py to transform.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/blastpdb.py to blastpdb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/ciffile.py to ciffile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/cifheader.py to cifheader.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/compare.py to compare.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py to dssp.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/emdfile.py to emdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/fixer.py to fixer.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/header.py to header.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py to localpdb.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbclusters.py to pdbclusters.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/pdbfile.py to pdbfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/starfile.py to starfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/stride.py to stride.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/waterbridges.py to waterbridges.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/proteins/wwpdb.py to wwpdb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py to analysis.cpython-313.pyc
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msa.py to msa.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/msafile.py to msafile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/plotting.py to plotting.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/sequence/sequence.py to sequence.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/dcdfile.py to dcdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/frame.py to frame.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/psffile.py to psffile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajbase.py to trajbase.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajectory.py to trajectory.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/trajectory/trajfile.py to trajfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/cluster.py to cluster.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/hic.py to hic.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/norm.py to norm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/chromatin/straw.py to straw.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/bird.py to bird.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/ccd.py to ccd.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/functions.py to functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/compounds/pdbligands.py to pdbligands.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/domain_decomposition/spectrus.py to spectrus.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/TreeConstruction.py to TreeConstruction.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/catchall.py to catchall.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/checkers.py to checkers.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/doctools.py to doctools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/drawtools.py to drawtools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/eigtools.py to eigtools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/laptools.py to laptools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/legacy.py to legacy.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/logger.py to logger.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/misctools.py to misctools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/pathtools.py to pathtools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/seqtools.py to seqtools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/utilities/settings.py to settings.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/apptools.py to apptools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/nmaoptions.py to nmaoptions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_align.py to prody_align.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_anm.py to prody_anm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_biomol.py to prody_biomol.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_blast.py to prody_blast.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_catdcd.py to prody_catdcd.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_clustenm.py to prody_clustenm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_contacts.py to prody_contacts.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_eda.py to prody_eda.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_energy.py to prody_energy.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_fetch.py to prody_fetch.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_gnm.py to prody_gnm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_pca.py to prody_pca.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/prody_apps/prody_select.py to prody_select.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_coevol.py to evol_coevol.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_conserv.py to evol_conserv.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_fetch.py to evol_fetch.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_filter.py to evol_filter.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_merge.py to evol_merge.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_occupancy.py to evol_occupancy.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_rankorder.py to evol_rankorder.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_refine.py to evol_refine.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/apps/evol_apps/evol_search.py to evol_search.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_anm.py to test_prody_anm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_catdcd.py to test_prody_catdcd.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_examples.py to test_prody_examples.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_gnm.py to test_prody_gnm.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/apps/test_prody_pca.py to test_prody_pca.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atomic.py to test_atomic.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_atommap.py to test_atommap.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_fragment.py to test_fragment.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_hierview.py to test_hierview.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_select.py to test_select.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/test_subset.py to test_subset.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/datafiles/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_editing.py to test_editing.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_enms.py to test_enms.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_pca.py to test_pca.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_signature.py to test_signature.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/test_lda.py to test_lda.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_conformation.py to test_conformation.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_ensemble.py to test_ensemble.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_functions.py to test_functions.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/test_pdbensemble.py to test_pdbensemble.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/test_kdtree.py to test_kdtree.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_contacts.py to test_contacts.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_measure.py to test_measure.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/test_transform.py to test_transform.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_ciffile.py to test_ciffile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_dssp.py to test_dssp.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_header.py to test_header.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_localpdb.py to test_localpdb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_pdbfile.py to test_pdbfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_wwpdb.py to test_wwpdb.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_fixer.py to test_fixer.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/test_waterbridges.py to test_waterbridges.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_analysis.py to test_analysis.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msa.py to test_msa.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_msafile.py to test_msafile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/test_sequence.py to test_sequence.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_dcdfile.py to test_dcdfile.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/test_frame.py to test_frame.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__init__.py to __init__.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_checkers.py to test_checkers.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_misctools.py to test_misctools.cpython-313.pyc
byte-compiling /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/test_pathtools.py to test_pathtools.cpython-313.pyc
writing byte-compilation script '/tmp/tmpog64zlad.py'
/usr/bin/python3 /tmp/tmpog64zlad.py
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
removing /tmp/tmpog64zlad.py
running install_egg_info
running egg_info
creating ProDy.egg-info
writing ProDy.egg-info/PKG-INFO
writing dependency_links to ProDy.egg-info/dependency_links.txt
writing entry points to ProDy.egg-info/entry_points.txt
writing requirements to ProDy.egg-info/requires.txt
writing top-level names to ProDy.egg-info/top_level.txt
writing manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest file 'ProDy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'prody/*/*/*.c'
warning: no files found matching 'prody/*/*.cpp'
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adding license file 'LICENSE.rst'
writing manifest file 'ProDy.egg-info/SOURCES.txt'
Copying ProDy.egg-info to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ProDy-2.4.1-py3.13.egg-info
running install_scripts
Installing evol script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
Installing prody script to /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ rm -rfv /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/__pycache__
+ mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ rm -f /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody
+ cd scripts
+ cp -pr ./prody ./python3.13-prody
+ cp -pr ./evol ./python3.13-evol
+ sed -i '1s=^#!/usr/bin/\(python\|env python\)[0-9.]*=#!/usr/bin/python3=' ./prody ./evol ./python3.13-prody ./python3.13-evol
+ for i in prody-3.13
+ touch -r ./python3.13-prody prody-3.13
+ install -p prody-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ ln -sf /usr/bin/python3.13-prody /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/prody-3.13
+ for i in evol-3.13
+ touch -r ./python3.13-evol evol-3.13
+ install -p evol-3.13 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ install -p ./python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin
+ ln -sf /usr/bin/python3.13-evol /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/bin/evol-3.13
+ cd ..
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.4.1-9.fc41 --unique-debug-suffix -2.4.1-9.fc41.x86_64 --unique-debug-src-base ProDy-2.4.1-9.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1
find-debuginfo: starting
Extracting debug info from 7 files
DWARF-compressing 7 files
sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/ProDy-2.4.1-9.fc41.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/flags.py:463: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:2: SyntaxWarning: invalid escape sequence '\|'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:719: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:738: SyntaxWarning: invalid escape sequence '\w'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:757: SyntaxWarning: invalid escape sequence '\d'
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:758: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/atomic/select.py:761: SyntaxWarning: invalid escape sequence '\ '
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib64/python3.13/site-packages/prody/dynamics/pca.py:59: SyntaxWarning: invalid escape sequence '\_'
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib64/python3.13/site-packages/prody/proteins/dssp.py:78: SyntaxWarning: invalid escape sequence '\*'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:438: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:440: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/proteins/localpdb.py:442: SyntaxWarning: invalid escape sequence '\.'
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
/usr/lib64/python3.13/site-packages/prody/sequence/analysis.py:169: SyntaxWarning: invalid escape sequence '\{'
Bytecompiling .py files below /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/acceptor.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/angle.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomic.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atom.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/bond.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atommap.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/crossterm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/chain.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/dihedral.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/donor.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/functions.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/atomgroup.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/flags.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/improper.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/nbexclusion.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/hierview.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/segment.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/residue.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/selection.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/pointer.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/subset.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/fields.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/dali.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/cath.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/goa.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/pfam.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/atomic/__pycache__/select.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/uniprot.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/database/__pycache__/quartataweb.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/adaptive.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/bbenm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/anm.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/analysis.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/bildfile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/compare.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/editing.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/entropy.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/exanm.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/exgnm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/gamma.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/heatmapper.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/functions.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/gnm.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/mechstiff.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/imanm.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/modeset.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/pca.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/rtb.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/dynamics/__pycache__/anm.cpython-313.opt-1.pyc: replacing with normalized version
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__pycache__/conformation.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/ensemble/__pycache__/pdbensemble.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/kdtree/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
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/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_lda.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/dynamics/__pycache__/test_enms.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_conformation.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_ensemble.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_functions.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_pdbensemble.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/ensemble/__pycache__/test_functions.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/kdtree/__pycache__/test_kdtree.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/atomic/__pycache__/test_hierview.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_measure.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_transform.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_header.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_dssp.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_ciffile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_localpdb.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_wwpdb.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_fixer.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_waterbridges.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/proteins/__pycache__/test_pdbfile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msa.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_sequence.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_msafile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_frame.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/trajectory/__pycache__/test_dcdfile.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_misctools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_checkers.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/utilities/__pycache__/test_pathtools.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/sequence/__pycache__/test_analysis.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/prody/tests/measure/__pycache__/test_contacts.cpython-313.pyc: rewriting with normalized contents
Scanned 89 directories and 723 files,
processed 236 inodes,
236 modified (52 replaced + 184 rewritten),
0 unsupported format, 0 errors
Reading /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: python3-ProDy-2.4.1-9.fc41.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.lQV8yb
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd ProDy-2.4.1
+ DOCDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/README.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/doc/python3-ProDy
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.V7SGvv
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ cd ProDy-2.4.1
+ LICENSEDIR=/builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy
+ cp -pr /builddir/build/BUILD/ProDy-2.4.1-build/ProDy-2.4.1/LICENSE.rst /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT/usr/share/licenses/python3-ProDy
+ RPM_EC=0
++ jobs -p
+ exit 0
warning: absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol
warning: absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody
Provides: ProDy = 0:2.4.1-9.fc41 python-ProDy = 2.4.1-9.fc41 python3-ProDy = 2.4.1-9.fc41 python3-ProDy(x86-64) = 2.4.1-9.fc41 python3.13-ProDy = 2.4.1-9.fc41 python3.13dist(prody) = 2.4.1 python3dist(prody) = 2.4.1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.13 python3.13dist(biopython) python3.13dist(numpy) >= 1.10 python3.13dist(pyparsing) <= 3.1.1 python3.13dist(scipy) python3.13dist(setuptools)
Obsoletes: python-ProDy < 2.4.1-9.fc41
Processing files: ProDy-debugsource-2.4.1-9.fc41.x86_64
Provides: ProDy-debugsource = 2.4.1-9.fc41 ProDy-debugsource(x86-64) = 2.4.1-9.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-ProDy-debuginfo-2.4.1-9.fc41.x86_64
Provides: debuginfo(build-id) = 49e5a1033439f3b818f7834e57c1ec801272bd93 debuginfo(build-id) = 52be8d0410bf743ab3534981c89d993397d825e1 debuginfo(build-id) = 6352e180baf3ced9c614863fa33266f1892affb6 debuginfo(build-id) = 6acc18ac5205731786283c7b172e4625f6649ab5 debuginfo(build-id) = 83e29f4a7eb3fc01f1e70a11eab2fc18ac2ed838 debuginfo(build-id) = 895ec77e3c2dbb06ae72c65c28b179ce84d11aba debuginfo(build-id) = db1832e00075345d95a866755ddbb4a770e3dfb1 python-ProDy-debuginfo = 2.4.1-9.fc41 python3-ProDy-debuginfo = 2.4.1-9.fc41 python3-ProDy-debuginfo(x86-64) = 2.4.1-9.fc41 python3.13-ProDy-debuginfo = 2.4.1-9.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: ProDy-debugsource(x86-64) = 2.4.1-9.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/ProDy-2.4.1-build/BUILDROOT
Wrote: /builddir/build/RPMS/ProDy-debugsource-2.4.1-9.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-ProDy-debuginfo-2.4.1-9.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-ProDy-2.4.1-9.fc41.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.sCFbZC
+ umask 022
+ cd /builddir/build/BUILD/ProDy-2.4.1-build
+ test -d /builddir/build/BUILD/ProDy-2.4.1-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build
+ rm -rf /builddir/build/BUILD/ProDy-2.4.1-build
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
absolute symlink: /usr/bin/evol-3.13 -> /usr/bin/python3.13-evol
absolute symlink: /usr/bin/prody-3.13 -> /usr/bin/python3.13-prody
Finish: rpmbuild ProDy-2.4.1-9.fc41.src.rpm
Finish: build phase for ProDy-2.4.1-9.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1735152518.492234/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-9.fc41.src.rpm) Config(child) 1 minutes 24 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
"packages": [
{
"name": "ProDy",
"epoch": null,
"version": "2.4.1",
"release": "9.fc41",
"arch": "src"
},
{
"name": "python3-ProDy",
"epoch": null,
"version": "2.4.1",
"release": "9.fc41",
"arch": "x86_64"
},
{
"name": "ProDy-debugsource",
"epoch": null,
"version": "2.4.1",
"release": "9.fc41",
"arch": "x86_64"
},
{
"name": "python3-ProDy-debuginfo",
"epoch": null,
"version": "2.4.1",
"release": "9.fc41",
"arch": "x86_64"
}
]
}
RPMResults finished