Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18d' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6415456-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64
Version: 0.69
PID: 5943
Logging PID: 5944
Task:
{'appstream': False,
'background': True,
'build_id': 6415456,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': '7bf4857b0d8fa5b6eceecaf09805fa73389cecbd',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/snakemake',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'snakemake',
'package_version': '7.32.4-1',
'project_dirname': 'automatic-obsoletes',
'project_name': 'automatic-obsoletes',
'project_owner': 'torsava',
'repo_priority': None,
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-rawhide-x86_64/',
'id': 'copr_base',
'name': 'Copr repository',
'priority': None}],
'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/music',
'source_json': {},
'source_type': None,
'submitter': 'https://src.fedoraproject.org/user/music',
'tags': [],
'task_id': '6415456-fedora-rawhide-x86_64',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/snakemake /var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake'...
Running: git checkout 7bf4857b0d8fa5b6eceecaf09805fa73389cecbd --
cmd: ['git', 'checkout', '7bf4857b0d8fa5b6eceecaf09805fa73389cecbd', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake
rc: 0
stdout:
stderr: Note: switching to '7bf4857b0d8fa5b6eceecaf09805fa73389cecbd'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 7bf4857 automatic import of snakemake
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading snakemake-7.32.4.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o snakemake-7.32.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/snakemake/snakemake-7.32.4.tar.gz/md5/2d7cd0faf40a8ca3c6e47f214536d1c9/snakemake-7.32.4.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Dload Upload Total Spent Left Speed
100 8677k 100 8677k 0 0 47.3M 0 --:--:-- --:--:-- --:--:-- 47.6M
INFO: Reading stdout from command: md5sum snakemake-7.32.4.tar.gz
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695064857.894917 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake/snakemake.spec) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.1.1
INFO: Mock Version: 5.1.1
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695064857.894917/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695064857.894917/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/9c51538352da1b77ef981d7b9d8c022ddd2b3cf27c94d14e10f3d86439cd490d/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/9c51538352da1b77ef981d7b9d8c022ddd2b3cf27c94d14e10f3d86439cd490d/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 41 MB/s | 15 MB 00:00
fedora 18 MB/s | 73 MB 00:03
Last metadata expiration check: 0:00:03 ago on Mon Sep 18 19:21:12 2023.
Package python3-dnf-4.16.2-4.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
python3-dnf-plugins-core noarch 4.4.2-1.fc39 copr_base 279 k
Upgrading:
dnf noarch 4.17.0-1.fc40 copr_base 465 k
dnf-data noarch 4.17.0-1.fc40 copr_base 39 k
libdnf x86_64 0.71.0-1.fc40 copr_base 656 k
python3-dnf noarch 4.17.0-1.fc40 copr_base 546 k
python3-hawkey x86_64 0.71.0-1.fc40 copr_base 107 k
python3-libdnf x86_64 0.71.0-1.fc40 copr_base 854 k
yum noarch 4.17.0-1.fc40 copr_base 37 k
Installing dependencies:
dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k
python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k
python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k
python3-distro noarch 1.8.0-6.fc39 fedora 49 k
python3-six noarch 1.16.0-12.fc39 copr_base 41 k
python3-systemd x86_64 235-6.fc39 copr_base 101 k
Transaction Summary
================================================================================
Install 7 Packages
Upgrade 7 Packages
Total download size: 3.8 M
Downloading Packages:
(1/14): python3-systemd-235-6.fc39.x86_64.rpm 2.1 MB/s | 101 kB 00:00
(2/14): python3-six-1.16.0-12.fc39.noarch.rpm 834 kB/s | 41 kB 00:00
(3/14): python3-dnf-plugins-core-4.4.2-1.fc39.n 4.1 MB/s | 279 kB 00:00
(4/14): python3-dbus-1.3.2-4.fc39.x86_64.rpm 525 kB/s | 157 kB 00:00
(5/14): dbus-libs-1.14.10-1.fc40.x86_64.rpm 468 kB/s | 155 kB 00:00
(6/14): dnf-4.17.0-1.fc40.noarch.rpm 12 MB/s | 465 kB 00:00
(7/14): dnf-data-4.17.0-1.fc40.noarch.rpm 3.2 MB/s | 39 kB 00:00
(8/14): python3-distro-1.8.0-6.fc39.noarch.rpm 614 kB/s | 49 kB 00:00
(9/14): python3-dateutil-2.8.2-10.fc39.noarch.r 849 kB/s | 355 kB 00:00
(10/14): libdnf-0.71.0-1.fc40.x86_64.rpm 16 MB/s | 656 kB 00:00
(11/14): python3-dnf-4.17.0-1.fc40.noarch.rpm 15 MB/s | 546 kB 00:00
(12/14): python3-hawkey-0.71.0-1.fc40.x86_64.rp 8.5 MB/s | 107 kB 00:00
(13/14): python3-libdnf-0.71.0-1.fc40.x86_64.rp 41 MB/s | 854 kB 00:00
(14/14): yum-4.17.0-1.fc40.noarch.rpm 3.0 MB/s | 37 kB 00:00
--------------------------------------------------------------------------------
Total 7.1 MB/s | 3.8 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Upgrading : libdnf-0.71.0-1.fc40.x86_64 1/21
Upgrading : python3-libdnf-0.71.0-1.fc40.x86_64 2/21
Upgrading : python3-hawkey-0.71.0-1.fc40.x86_64 3/21
Upgrading : dnf-data-4.17.0-1.fc40.noarch 4/21
Upgrading : python3-dnf-4.17.0-1.fc40.noarch 5/21
Installing : python3-distro-1.8.0-6.fc39.noarch 6/21
Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 7/21
Installing : python3-dbus-1.3.2-4.fc39.x86_64 8/21
Upgrading : dnf-4.17.0-1.fc40.noarch 9/21
Running scriptlet: dnf-4.17.0-1.fc40.noarch 9/21
Installing : python3-systemd-235-6.fc39.x86_64 10/21
Installing : python3-six-1.16.0-12.fc39.noarch 11/21
Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 12/21
Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 13/21
Upgrading : yum-4.17.0-1.fc40.noarch 14/21
Cleanup : yum-4.16.2-4.fc40.noarch 15/21
Running scriptlet: dnf-4.16.2-4.fc40.noarch 16/21
Cleanup : dnf-4.16.2-4.fc40.noarch 16/21
Running scriptlet: dnf-4.16.2-4.fc40.noarch 16/21
Cleanup : python3-dnf-4.16.2-4.fc40.noarch 17/21
Cleanup : python3-hawkey-0.70.2-1.fc39.x86_64 18/21
Cleanup : dnf-data-4.16.2-4.fc40.noarch 19/21
Cleanup : python3-libdnf-0.70.2-1.fc39.x86_64 20/21
Cleanup : libdnf-0.70.2-1.fc39.x86_64 21/21
Running scriptlet: libdnf-0.70.2-1.fc39.x86_64 21/21
Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 1/21
Verifying : python3-six-1.16.0-12.fc39.noarch 2/21
Verifying : python3-systemd-235-6.fc39.x86_64 3/21
Verifying : dbus-libs-1:1.14.10-1.fc40.x86_64 4/21
Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 5/21
Verifying : python3-dbus-1.3.2-4.fc39.x86_64 6/21
Verifying : python3-distro-1.8.0-6.fc39.noarch 7/21
Verifying : dnf-4.17.0-1.fc40.noarch 8/21
Verifying : dnf-4.16.2-4.fc40.noarch 9/21
Verifying : dnf-data-4.17.0-1.fc40.noarch 10/21
Verifying : dnf-data-4.16.2-4.fc40.noarch 11/21
Verifying : libdnf-0.71.0-1.fc40.x86_64 12/21
Verifying : libdnf-0.70.2-1.fc39.x86_64 13/21
Verifying : python3-dnf-4.17.0-1.fc40.noarch 14/21
Verifying : python3-dnf-4.16.2-4.fc40.noarch 15/21
Verifying : python3-hawkey-0.71.0-1.fc40.x86_64 16/21
Verifying : python3-hawkey-0.70.2-1.fc39.x86_64 17/21
Verifying : python3-libdnf-0.71.0-1.fc40.x86_64 18/21
Verifying : python3-libdnf-0.70.2-1.fc39.x86_64 19/21
Verifying : yum-4.17.0-1.fc40.noarch 20/21
Verifying : yum-4.16.2-4.fc40.noarch 21/21
Upgraded:
dnf-4.17.0-1.fc40.noarch dnf-data-4.17.0-1.fc40.noarch
libdnf-0.71.0-1.fc40.x86_64 python3-dnf-4.17.0-1.fc40.noarch
python3-hawkey-0.71.0-1.fc40.x86_64 python3-libdnf-0.71.0-1.fc40.x86_64
yum-4.17.0-1.fc40.noarch
Installed:
dbus-libs-1:1.14.10-1.fc40.x86_64
python3-dateutil-1:2.8.2-10.fc39.noarch
python3-dbus-1.3.2-4.fc39.x86_64
python3-distro-1.8.0-6.fc39.noarch
python3-dnf-plugins-core-4.4.2-1.fc39.noarch
python3-six-1.16.0-12.fc39.noarch
python3-systemd-235-6.fc39.x86_64
Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1695064857.894917/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 38 MB/s | 15 MB 00:00
fedora 21 MB/s | 73 MB 00:03
Last metadata expiration check: 0:00:03 ago on Mon Sep 18 19:21:44 2023.
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing group/module packages:
bash x86_64 5.2.15-5.fc39 fedora 1.8 M
bzip2 x86_64 1.0.8-16.fc39 fedora 52 k
coreutils x86_64 9.4-1.fc40 fedora 1.1 M
cpio x86_64 2.14-4.fc39 fedora 279 k
diffutils x86_64 3.10-3.fc39 fedora 398 k
fedora-release-common noarch 40-0.7 fedora 18 k
findutils x86_64 1:4.9.0-6.fc40 fedora 492 k
gawk x86_64 5.2.2-2.fc39 fedora 1.1 M
glibc-minimal-langpack x86_64 2.38.9000-8.fc40 fedora 73 k
grep x86_64 3.11-5.fc40 fedora 298 k
gzip x86_64 1.12-6.fc39 fedora 166 k
info x86_64 7.0.3-3.fc39 fedora 182 k
patch x86_64 2.7.6-22.fc39 fedora 125 k
redhat-rpm-config noarch 266-1.fc40 fedora 80 k
rpm-build x86_64 4.18.99-1.fc40 fedora 78 k
sed x86_64 4.8-14.fc39 fedora 306 k
shadow-utils x86_64 2:4.14.0-1.fc40 fedora 1.3 M
tar x86_64 2:1.35-2.fc40 fedora 864 k
unzip x86_64 6.0-62.fc39 fedora 184 k
util-linux x86_64 2.39.2-1.fc40 fedora 1.2 M
which x86_64 2.21-40.fc39 fedora 42 k
xz x86_64 5.4.4-1.fc39 fedora 556 k
Installing dependencies:
alternatives x86_64 1.25-1.fc39 fedora 39 k
ansible-srpm-macros noarch 1-11.fc39 fedora 21 k
audit-libs x86_64 3.1.2-4.fc40 copr_base 118 k
authselect x86_64 1.4.2-3.fc39 fedora 144 k
authselect-libs x86_64 1.4.2-3.fc39 fedora 249 k
basesystem noarch 11-18.fc39 fedora 7.2 k
binutils x86_64 2.41-5.fc40 fedora 6.3 M
binutils-gold x86_64 2.41-5.fc40 fedora 796 k
bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k
ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k
coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M
cracklib x86_64 2.9.11-2.fc39 fedora 94 k
crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k
curl x86_64 8.3.0-1.fc40 fedora 354 k
cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k
debugedit x86_64 5.0-10.fc39 fedora 77 k
dwz x86_64 0.15-3.fc39 fedora 134 k
ed x86_64 1.19-4.fc39 fedora 79 k
efi-srpm-macros noarch 5-9.fc39 fedora 22 k
elfutils x86_64 0.189-6.fc40 fedora 535 k
elfutils-debuginfod-client x86_64 0.189-6.fc40 fedora 38 k
elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k
elfutils-libelf x86_64 0.189-6.fc40 fedora 195 k
elfutils-libs x86_64 0.189-6.fc40 fedora 258 k
fedora-gpg-keys noarch 40-0.1 fedora 130 k
fedora-release noarch 40-0.7 fedora 8.0 k
fedora-release-identity-basic
noarch 40-0.7 fedora 8.8 k
fedora-repos noarch 40-0.1 fedora 9.4 k
fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k
file x86_64 5.45-1.fc40 copr_base 50 k
file-libs x86_64 5.45-1.fc40 copr_base 764 k
filesystem x86_64 3.18-6.fc39 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k
forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k
fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k
gdb-minimal x86_64 13.2-8.fc40 fedora 4.2 M
gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k
ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k
glibc x86_64 2.38.9000-8.fc40 fedora 2.2 M
glibc-common x86_64 2.38.9000-8.fc40 fedora 355 k
glibc-gconv-extra x86_64 2.38.9000-8.fc40 fedora 1.6 M
gmp x86_64 1:6.2.1-5.fc39 fedora 313 k
gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k
go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k
jansson x86_64 2.13.1-7.fc39 fedora 44 k
kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k
keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k
krb5-libs x86_64 1.21.2-1.fc40 fedora 765 k
libacl x86_64 2.3.1-9.fc40 fedora 23 k
libarchive x86_64 3.7.2-1.fc40 fedora 408 k
libattr x86_64 2.5.1-9.fc40 fedora 18 k
libblkid x86_64 2.39.2-1.fc40 fedora 116 k
libbrotli x86_64 1.1.0-1.fc40 copr_base 336 k
libcap x86_64 2.48-7.fc39 fedora 68 k
libcap-ng x86_64 0.8.3-8.fc40 copr_base 33 k
libcom_err x86_64 1.47.0-2.fc39 fedora 26 k
libcurl x86_64 8.3.0-1.fc40 fedora 344 k
libdb x86_64 5.3.28-58.fc40 fedora 759 k
libeconf x86_64 0.5.2-1.fc40 fedora 30 k
libevent x86_64 2.1.12-9.fc39 fedora 258 k
libfdisk x86_64 2.39.2-1.fc40 fedora 162 k
libffi x86_64 3.4.4-4.fc39 fedora 40 k
libgcc x86_64 13.2.1-1.fc39 fedora 109 k
libgomp x86_64 13.2.1-1.fc39 fedora 319 k
libidn2 x86_64 2.3.4-3.fc39 fedora 117 k
libmount x86_64 2.39.2-1.fc40 fedora 154 k
libnghttp2 x86_64 1.56.0-1.fc40 fedora 75 k
libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k
libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k
libpsl x86_64 0.21.2-4.fc39 fedora 63 k
libpwquality x86_64 1.4.5-7.fc39 copr_base 109 k
libselinux x86_64 3.5-5.fc39 copr_base 87 k
libsemanage x86_64 3.5-4.fc39 copr_base 120 k
libsepol x86_64 3.5-2.fc39 fedora 324 k
libsigsegv x86_64 2.14-5.fc39 fedora 27 k
libsmartcols x86_64 2.39.2-1.fc40 fedora 67 k
libssh x86_64 0.10.5-2.fc39 fedora 211 k
libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k
libstdc++ x86_64 13.2.1-1.fc39 fedora 860 k
libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k
libtirpc x86_64 1.3.3-1.rc2.fc39 fedora 94 k
libunistring x86_64 1.1-5.fc40 fedora 543 k
libutempter x86_64 1.2.1-10.fc39 fedora 26 k
libuuid x86_64 2.39.2-1.fc40 fedora 28 k
libverto x86_64 0.3.2-6.fc39 fedora 20 k
libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k
libxml2 x86_64 2.11.5-1.fc40 fedora 698 k
libzstd x86_64 1.5.5-4.fc39 fedora 309 k
lua-libs x86_64 5.4.6-3.fc39 fedora 133 k
lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k
lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k
mpfr x86_64 4.2.0-3.fc39 fedora 344 k
ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k
ncurses-libs x86_64 6.4-7.20230520.fc40 fedora 337 k
ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k
openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k
openldap x86_64 2.6.6-1.fc39 fedora 255 k
openssl-libs x86_64 1:3.1.1-4.fc40 fedora 2.2 M
p11-kit x86_64 0.25.0-2.fc39 fedora 486 k
p11-kit-trust x86_64 0.25.0-2.fc39 fedora 142 k
package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k
pam x86_64 1.5.3-2.fc39 fedora 548 k
pam-libs x86_64 1.5.3-2.fc39 fedora 58 k
pcre2 x86_64 10.42-1.fc39.2 fedora 233 k
pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k
perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k
pkgconf x86_64 1.9.5-2.fc39 fedora 42 k
pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k
pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k
popt x86_64 1.19-3.fc39 fedora 66 k
publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k
pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k
python-srpm-macros noarch 3.12-4.fc40 fedora 25 k
qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k
qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k
readline x86_64 8.2-4.fc39 fedora 213 k
rpm x86_64 4.18.99-1.fc40 fedora 538 k
rpm-build-libs x86_64 4.18.99-1.fc40 fedora 96 k
rpm-libs x86_64 4.18.99-1.fc40 fedora 312 k
rpm-sequoia x86_64 1.5.0-1.fc40 fedora 883 k
rust-srpm-macros noarch 24-5.fc40 fedora 12 k
setup noarch 2.14.4-1.fc39 fedora 154 k
sqlite-libs x86_64 3.43.1-1.fc40 fedora 688 k
systemd-libs x86_64 254.1-2.fc40 fedora 688 k
tzdata noarch 2023c-3.fc40 fedora 718 k
util-linux-core x86_64 2.39.2-1.fc40 fedora 493 k
xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k
xz-libs x86_64 5.4.4-1.fc39 fedora 108 k
zip x86_64 3.0-38.fc39 fedora 266 k
zlib x86_64 1.2.13-4.fc39 fedora 94 k
zstd x86_64 1.5.5-4.fc39 fedora 482 k
Installing Groups:
Buildsystem building group
Transaction Summary
================================================================================
Install 153 Packages
Total download size: 53 M
Installed size: 183 M
Downloading Packages:
(1/153): audit-libs-3.1.2-4.fc40.x86_64.rpm 2.1 MB/s | 118 kB 00:00
(2/153): file-5.45-1.fc40.x86_64.rpm 871 kB/s | 50 kB 00:00
(3/153): libbrotli-1.1.0-1.fc40.x86_64.rpm 13 MB/s | 336 kB 00:00
(4/153): libcap-ng-0.8.3-8.fc40.x86_64.rpm 1.3 MB/s | 33 kB 00:00
(5/153): file-libs-5.45-1.fc40.x86_64.rpm 8.4 MB/s | 764 kB 00:00
(6/153): libpwquality-1.4.5-7.fc39.x86_64.rpm 10 MB/s | 109 kB 00:00
(7/153): libselinux-3.5-5.fc39.x86_64.rpm 7.5 MB/s | 87 kB 00:00
(8/153): libsemanage-3.5-4.fc39.x86_64.rpm 10 MB/s | 120 kB 00:00
(9/153): ansible-srpm-macros-1-11.fc39.noarch.r 205 kB/s | 21 kB 00:00
(10/153): alternatives-1.25-1.fc39.x86_64.rpm 338 kB/s | 39 kB 00:00
(11/153): basesystem-11-18.fc39.noarch.rpm 162 kB/s | 7.2 kB 00:00
(12/153): authselect-1.4.2-3.fc39.x86_64.rpm 696 kB/s | 144 kB 00:00
(13/153): authselect-libs-1.4.2-3.fc39.x86_64.r 1.4 MB/s | 249 kB 00:00
(14/153): binutils-gold-2.41-5.fc40.x86_64.rpm 2.0 MB/s | 796 kB 00:00
(15/153): bzip2-1.0.8-16.fc39.x86_64.rpm 1.4 MB/s | 52 kB 00:00
(16/153): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 511 kB/s | 41 kB 00:00
(17/153): bash-5.2.15-5.fc39.x86_64.rpm 2.0 MB/s | 1.8 MB 00:00
(18/153): ca-certificates-2023.2.60_v7.0.306-3. 1.1 MB/s | 837 kB 00:00
(19/153): coreutils-9.4-1.fc40.x86_64.rpm 2.2 MB/s | 1.1 MB 00:00
(20/153): cpio-2.14-4.fc39.x86_64.rpm 3.6 MB/s | 279 kB 00:00
(21/153): cracklib-2.9.11-2.fc39.x86_64.rpm 681 kB/s | 94 kB 00:00
(22/153): crypto-policies-20230731-1.git5ed06e0 3.2 MB/s | 99 kB 00:00
(23/153): curl-8.3.0-1.fc40.x86_64.rpm 7.7 MB/s | 354 kB 00:00
(24/153): cyrus-sasl-lib-2.1.28-11.fc39.x86_64. 14 MB/s | 793 kB 00:00
(25/153): debugedit-5.0-10.fc39.x86_64.rpm 3.2 MB/s | 77 kB 00:00
(26/153): diffutils-3.10-3.fc39.x86_64.rpm 13 MB/s | 398 kB 00:00
(27/153): coreutils-common-9.4-1.fc40.x86_64.rp 5.0 MB/s | 2.1 MB 00:00
(28/153): dwz-0.15-3.fc39.x86_64.rpm 5.5 MB/s | 134 kB 00:00
(29/153): ed-1.19-4.fc39.x86_64.rpm 3.0 MB/s | 79 kB 00:00
(30/153): elfutils-0.189-6.fc40.x86_64.rpm 6.9 MB/s | 535 kB 00:00
(31/153): elfutils-debuginfod-client-0.189-6.fc 2.2 MB/s | 38 kB 00:00
(32/153): efi-srpm-macros-5-9.fc39.noarch.rpm 204 kB/s | 22 kB 00:00
(33/153): elfutils-default-yama-scope-0.189-6.f 819 kB/s | 13 kB 00:00
(34/153): elfutils-libelf-0.189-6.fc40.x86_64.r 6.3 MB/s | 195 kB 00:00
(35/153): elfutils-libs-0.189-6.fc40.x86_64.rpm 6.3 MB/s | 258 kB 00:00
(36/153): fedora-gpg-keys-40-0.1.noarch.rpm 4.9 MB/s | 130 kB 00:00
(37/153): fedora-release-40-0.7.noarch.rpm 504 kB/s | 8.0 kB 00:00
(38/153): fedora-release-identity-basic-40-0.7. 552 kB/s | 8.8 kB 00:00
(39/153): fedora-release-common-40-0.7.noarch.r 498 kB/s | 18 kB 00:00
(40/153): fedora-repos-40-0.1.noarch.rpm 587 kB/s | 9.4 kB 00:00
(41/153): fedora-repos-rawhide-40-0.1.noarch.rp 554 kB/s | 9.0 kB 00:00
(42/153): findutils-4.9.0-6.fc40.x86_64.rpm 20 MB/s | 492 kB 00:00
(43/153): fonts-srpm-macros-2.0.5-12.fc39.noarc 1.5 MB/s | 26 kB 00:00
(44/153): forge-srpm-macros-0.1.0-1.fc40.noarch 1.1 MB/s | 18 kB 00:00
(45/153): binutils-2.41-5.fc40.x86_64.rpm 3.0 MB/s | 6.3 MB 00:02
(46/153): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 189 kB/s | 7.4 kB 00:00
(47/153): filesystem-3.18-6.fc39.x86_64.rpm 8.0 MB/s | 1.1 MB 00:00
(48/153): gdbm-libs-1.23-4.fc39.x86_64.rpm 3.1 MB/s | 56 kB 00:00
(49/153): gawk-5.2.2-2.fc39.x86_64.rpm 21 MB/s | 1.1 MB 00:00
(50/153): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 445 kB/s | 7.8 kB 00:00
(51/153): glibc-2.38.9000-8.fc40.x86_64.rpm 26 MB/s | 2.2 MB 00:00
(52/153): glibc-common-2.38.9000-8.fc40.x86_64. 4.3 MB/s | 355 kB 00:00
(53/153): gdb-minimal-13.2-8.fc40.x86_64.rpm 25 MB/s | 4.2 MB 00:00
(54/153): glibc-minimal-langpack-2.38.9000-8.fc 2.6 MB/s | 73 kB 00:00
(55/153): glibc-gconv-extra-2.38.9000-8.fc40.x8 42 MB/s | 1.6 MB 00:00
(56/153): gnat-srpm-macros-6-3.fc39.noarch.rpm 519 kB/s | 8.8 kB 00:00
(57/153): go-srpm-macros-3.2.0-7.fc40.noarch.rp 1.6 MB/s | 27 kB 00:00
(58/153): grep-3.11-5.fc40.x86_64.rpm 14 MB/s | 298 kB 00:00
(59/153): gzip-1.12-6.fc39.x86_64.rpm 7.6 MB/s | 166 kB 00:00
(60/153): gmp-6.2.1-5.fc39.x86_64.rpm 7.1 MB/s | 313 kB 00:00
(61/153): info-7.0.3-3.fc39.x86_64.rpm 9.4 MB/s | 182 kB 00:00
(62/153): jansson-2.13.1-7.fc39.x86_64.rpm 2.6 MB/s | 44 kB 00:00
(63/153): kernel-srpm-macros-1.0-20.fc39.noarch 632 kB/s | 10 kB 00:00
(64/153): libacl-2.3.1-9.fc40.x86_64.rpm 1.3 MB/s | 23 kB 00:00
(65/153): keyutils-libs-1.6.1-7.fc39.x86_64.rpm 612 kB/s | 31 kB 00:00
(66/153): krb5-libs-1.21.2-1.fc40.x86_64.rpm 10 MB/s | 765 kB 00:00
(67/153): libattr-2.5.1-9.fc40.x86_64.rpm 692 kB/s | 18 kB 00:00
(68/153): libblkid-2.39.2-1.fc40.x86_64.rpm 6.4 MB/s | 116 kB 00:00
(69/153): libcap-2.48-7.fc39.x86_64.rpm 3.9 MB/s | 68 kB 00:00
(70/153): libarchive-3.7.2-1.fc40.x86_64.rpm 5.3 MB/s | 408 kB 00:00
(71/153): libcom_err-1.47.0-2.fc39.x86_64.rpm 843 kB/s | 26 kB 00:00
(72/153): libdb-5.3.28-58.fc40.x86_64.rpm 20 MB/s | 759 kB 00:00
(73/153): libeconf-0.5.2-1.fc40.x86_64.rpm 1.8 MB/s | 30 kB 00:00
(74/153): libevent-2.1.12-9.fc39.x86_64.rpm 11 MB/s | 258 kB 00:00
(75/153): libfdisk-2.39.2-1.fc40.x86_64.rpm 7.8 MB/s | 162 kB 00:00
(76/153): libcurl-8.3.0-1.fc40.x86_64.rpm 4.6 MB/s | 344 kB 00:00
(77/153): libffi-3.4.4-4.fc39.x86_64.rpm 2.0 MB/s | 40 kB 00:00
(78/153): libgcc-13.2.1-1.fc39.x86_64.rpm 5.8 MB/s | 109 kB 00:00
(79/153): libidn2-2.3.4-3.fc39.x86_64.rpm 3.6 MB/s | 117 kB 00:00
(80/153): libgomp-13.2.1-1.fc39.x86_64.rpm 7.7 MB/s | 319 kB 00:00
(81/153): libmount-2.39.2-1.fc40.x86_64.rpm 5.2 MB/s | 154 kB 00:00
(82/153): libnghttp2-1.56.0-1.fc40.x86_64.rpm 2.9 MB/s | 75 kB 00:00
(83/153): libpsl-0.21.2-4.fc39.x86_64.rpm 3.4 MB/s | 63 kB 00:00
(84/153): libnsl2-2.0.0-6.fc39.x86_64.rpm 433 kB/s | 30 kB 00:00
(85/153): libpkgconf-1.9.5-2.fc39.x86_64.rpm 537 kB/s | 38 kB 00:00
(86/153): libsepol-3.5-2.fc39.x86_64.rpm 3.7 MB/s | 324 kB 00:00
(87/153): libsmartcols-2.39.2-1.fc40.x86_64.rpm 1.1 MB/s | 67 kB 00:00
(88/153): libssh-config-0.10.5-2.fc39.noarch.rp 567 kB/s | 9.2 kB 00:00
(89/153): libsigsegv-2.14-5.fc39.x86_64.rpm 244 kB/s | 27 kB 00:00
(90/153): libstdc++-13.2.1-1.fc39.x86_64.rpm 14 MB/s | 860 kB 00:00
(91/153): libtirpc-1.3.3-1.rc2.fc39.x86_64.rpm 1.8 MB/s | 94 kB 00:00
(92/153): libunistring-1.1-5.fc40.x86_64.rpm 13 MB/s | 543 kB 00:00
(93/153): libssh-0.10.5-2.fc39.x86_64.rpm 1.1 MB/s | 211 kB 00:00
(94/153): libutempter-1.2.1-10.fc39.x86_64.rpm 1.4 MB/s | 26 kB 00:00
(95/153): libverto-0.3.2-6.fc39.x86_64.rpm 1.1 MB/s | 20 kB 00:00
(96/153): libuuid-2.39.2-1.fc40.x86_64.rpm 762 kB/s | 28 kB 00:00
(97/153): libxcrypt-4.4.36-2.fc39.x86_64.rpm 6.4 MB/s | 119 kB 00:00
(98/153): libzstd-1.5.5-4.fc39.x86_64.rpm 15 MB/s | 309 kB 00:00
(99/153): lua-libs-5.4.6-3.fc39.x86_64.rpm 6.9 MB/s | 133 kB 00:00
(100/153): lua-srpm-macros-1-9.fc39.noarch.rpm 319 kB/s | 8.6 kB 00:00
(101/153): lz4-libs-1.9.4-4.fc39.x86_64.rpm 860 kB/s | 67 kB 00:00
(102/153): mpfr-4.2.0-3.fc39.x86_64.rpm 9.1 MB/s | 344 kB 00:00
(103/153): ncurses-base-6.4-7.20230520.fc40.noa 3.4 MB/s | 88 kB 00:00
(104/153): ncurses-libs-6.4-7.20230520.fc40.x86 9.1 MB/s | 337 kB 00:00
(105/153): ocaml-srpm-macros-8-2.fc39.noarch.rp 826 kB/s | 14 kB 00:00
(106/153): openblas-srpm-macros-2-14.fc39.noarc 380 kB/s | 7.5 kB 00:00
(107/153): openldap-2.6.6-1.fc39.x86_64.rpm 7.1 MB/s | 255 kB 00:00
(108/153): libxml2-2.11.5-1.fc40.x86_64.rpm 1.9 MB/s | 698 kB 00:00
(109/153): libtasn1-4.19.0-3.fc39.x86_64.rpm 138 kB/s | 74 kB 00:00
(110/153): openssl-libs-3.1.1-4.fc40.x86_64.rpm 30 MB/s | 2.2 MB 00:00
(111/153): package-notes-srpm-macros-0.5-9.fc39 691 kB/s | 11 kB 00:00
(112/153): pam-1.5.3-2.fc39.x86_64.rpm 16 MB/s | 548 kB 00:00
(113/153): pam-libs-1.5.3-2.fc39.x86_64.rpm 3.3 MB/s | 58 kB 00:00
(114/153): patch-2.7.6-22.fc39.x86_64.rpm 6.9 MB/s | 125 kB 00:00
(115/153): pcre2-10.42-1.fc39.2.x86_64.rpm 9.8 MB/s | 233 kB 00:00
(116/153): p11-kit-0.25.0-2.fc39.x86_64.rpm 2.8 MB/s | 486 kB 00:00
(117/153): perl-srpm-macros-1-51.fc39.noarch.rp 413 kB/s | 8.0 kB 00:00
(118/153): pcre2-syntax-10.42-1.fc39.2.noarch.r 2.6 MB/s | 143 kB 00:00
(119/153): pkgconf-1.9.5-2.fc39.x86_64.rpm 1.1 MB/s | 42 kB 00:00
(120/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 175 kB/s | 14 kB 00:00
(121/153): pkgconf-pkg-config-1.9.5-2.fc39.x86_ 140 kB/s | 9.6 kB 00:00
(122/153): publicsuffix-list-dafsa-20230812-1.f 1.3 MB/s | 57 kB 00:00
(123/153): popt-1.19-3.fc39.x86_64.rpm 857 kB/s | 66 kB 00:00
(124/153): pyproject-srpm-macros-1.9.0-2.fc39.n 398 kB/s | 14 kB 00:00
(125/153): python-srpm-macros-3.12-4.fc40.noarc 748 kB/s | 25 kB 00:00
(126/153): p11-kit-trust-0.25.0-2.fc39.x86_64.r 362 kB/s | 142 kB 00:00
(127/153): qt5-srpm-macros-5.15.10-2.fc39.noarc 292 kB/s | 8.3 kB 00:00
(128/153): qt6-srpm-macros-6.5.2-2.fc39.noarch. 558 kB/s | 9.2 kB 00:00
(129/153): redhat-rpm-config-266-1.fc40.noarch. 2.3 MB/s | 80 kB 00:00
(130/153): rpm-build-4.18.99-1.fc40.x86_64.rpm 2.3 MB/s | 78 kB 00:00
(131/153): rpm-build-libs-4.18.99-1.fc40.x86_64 2.6 MB/s | 96 kB 00:00
(132/153): rpm-4.18.99-1.fc40.x86_64.rpm 3.4 MB/s | 538 kB 00:00
(133/153): rpm-libs-4.18.99-1.fc40.x86_64.rpm 3.7 MB/s | 312 kB 00:00
(134/153): rust-srpm-macros-24-5.fc40.noarch.rp 670 kB/s | 12 kB 00:00
(135/153): rpm-sequoia-1.5.0-1.fc40.x86_64.rpm 11 MB/s | 883 kB 00:00
(136/153): readline-8.2-4.fc39.x86_64.rpm 808 kB/s | 213 kB 00:00
(137/153): setup-2.14.4-1.fc39.noarch.rpm 5.9 MB/s | 154 kB 00:00
(138/153): sed-4.8-14.fc39.x86_64.rpm 3.9 MB/s | 306 kB 00:00
(139/153): sqlite-libs-3.43.1-1.fc40.x86_64.rpm 6.7 MB/s | 688 kB 00:00
(140/153): systemd-libs-254.1-2.fc40.x86_64.rpm 4.5 MB/s | 688 kB 00:00
(141/153): tar-1.35-2.fc40.x86_64.rpm 5.3 MB/s | 864 kB 00:00
(142/153): tzdata-2023c-3.fc40.noarch.rpm 4.9 MB/s | 718 kB 00:00
(143/153): unzip-6.0-62.fc39.x86_64.rpm 2.1 MB/s | 184 kB 00:00
(144/153): util-linux-core-2.39.2-1.fc40.x86_64 5.5 MB/s | 493 kB 00:00
(145/153): util-linux-2.39.2-1.fc40.x86_64.rpm 8.0 MB/s | 1.2 MB 00:00
(146/153): which-2.21-40.fc39.x86_64.rpm 1.9 MB/s | 42 kB 00:00
(147/153): xxhash-libs-0.8.2-1.fc39.x86_64.rpm 1.9 MB/s | 37 kB 00:00
(148/153): xz-libs-5.4.4-1.fc39.x86_64.rpm 4.1 MB/s | 108 kB 00:00
(149/153): zip-3.0-38.fc39.x86_64.rpm 6.4 MB/s | 266 kB 00:00
(150/153): xz-5.4.4-1.fc39.x86_64.rpm 6.1 MB/s | 556 kB 00:00
(151/153): zlib-1.2.13-4.fc39.x86_64.rpm 3.7 MB/s | 94 kB 00:00
(152/153): shadow-utils-4.14.0-1.fc40.x86_64.rp 2.2 MB/s | 1.3 MB 00:00
(153/153): zstd-1.5.5-4.fc39.x86_64.rpm 7.1 MB/s | 482 kB 00:00
--------------------------------------------------------------------------------
Total 11 MB/s | 53 MB 00:04
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xA15B79CC:
Userid : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x18B8E74C:
Userid : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1
Preparing : 1/1
Installing : libgcc-13.2.1-1.fc39.x86_64 1/153
Running scriptlet: libgcc-13.2.1-1.fc39.x86_64 1/153
Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153
Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153
Installing : tzdata-2023c-3.fc40.noarch 3/153
Installing : fedora-release-identity-basic-40-0.7.noarch 4/153
Installing : fedora-repos-rawhide-40-0.1.noarch 5/153
Installing : fedora-gpg-keys-40-0.1.noarch 6/153
Installing : fedora-repos-40-0.1.noarch 7/153
Installing : fedora-release-common-40-0.7.noarch 8/153
Installing : fedora-release-40-0.7.noarch 9/153
Installing : setup-2.14.4-1.fc39.noarch 10/153
warning: /etc/hosts created as /etc/hosts.rpmnew
Running scriptlet: setup-2.14.4-1.fc39.noarch 10/153
Installing : filesystem-3.18-6.fc39.x86_64 11/153
Installing : basesystem-11-18.fc39.noarch 12/153
Installing : rust-srpm-macros-24-5.fc40.noarch 13/153
Installing : qt6-srpm-macros-6.5.2-2.fc39.noarch 14/153
Installing : qt5-srpm-macros-5.15.10-2.fc39.noarch 15/153
Installing : pyproject-srpm-macros-1.9.0-2.fc39.noarch 16/153
Installing : publicsuffix-list-dafsa-20230812-1.fc40.noarch 17/153
Installing : pkgconf-m4-1.9.5-2.fc39.noarch 18/153
Installing : perl-srpm-macros-1-51.fc39.noarch 19/153
Installing : pcre2-syntax-10.42-1.fc39.2.noarch 20/153
Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 21/153
Installing : openblas-srpm-macros-2-14.fc39.noarch 22/153
Installing : ocaml-srpm-macros-8-2.fc39.noarch 23/153
Installing : ncurses-base-6.4-7.20230520.fc40.noarch 24/153
Installing : glibc-gconv-extra-2.38.9000-8.fc40.x86_64 25/153
Running scriptlet: glibc-gconv-extra-2.38.9000-8.fc40.x86_64 25/153
Installing : glibc-minimal-langpack-2.38.9000-8.fc40.x86_64 26/153
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Installing : cracklib-2.9.11-2.fc39.x86_64 120/153
Installing : libpwquality-1.4.5-7.fc39.x86_64 121/153
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Running scriptlet: rpm-4.18.99-1.fc40.x86_64 140/153
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Installing : ansible-srpm-macros-1-11.fc39.noarch 144/153
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Installing : go-srpm-macros-3.2.0-7.fc40.noarch 147/153
Installing : python-srpm-macros-3.12-4.fc40.noarch 148/153
Installing : redhat-rpm-config-266-1.fc40.noarch 149/153
Installing : rpm-build-4.18.99-1.fc40.x86_64 150/153
Installing : util-linux-2.39.2-1.fc40.x86_64 151/153
Installing : which-2.21-40.fc39.x86_64 152/153
Installing : info-7.0.3-3.fc39.x86_64 153/153
Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153
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Running scriptlet: rpm-4.18.99-1.fc40.x86_64 153/153
Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153
Verifying : audit-libs-3.1.2-4.fc40.x86_64 1/153
Verifying : file-5.45-1.fc40.x86_64 2/153
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Verifying : binutils-gold-2.41-5.fc40.x86_64 16/153
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Installed:
alternatives-1.25-1.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.x86_64
authselect-1.4.2-3.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.x86_64
binutils-2.41-5.fc40.x86_64
binutils-gold-2.41-5.fc40.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.x86_64
coreutils-common-9.4-1.fc40.x86_64
cpio-2.14-4.fc39.x86_64
cracklib-2.9.11-2.fc39.x86_64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.x86_64
cyrus-sasl-lib-2.1.28-11.fc39.x86_64
debugedit-5.0-10.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.19-4.fc39.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.x86_64
elfutils-debuginfod-client-0.189-6.fc40.x86_64
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.x86_64
elfutils-libs-0.189-6.fc40.x86_64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.x86_64
file-libs-5.45-1.fc40.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-1:4.9.0-6.fc40.x86_64
fonts-srpm-macros-1:2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.x86_64
gdb-minimal-13.2-8.fc40.x86_64
gdbm-libs-1:1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.x86_64
glibc-common-2.38.9000-8.fc40.x86_64
glibc-gconv-extra-2.38.9000-8.fc40.x86_64
glibc-minimal-langpack-2.38.9000-8.fc40.x86_64
gmp-1:6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.0.3-3.fc39.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.x86_64
krb5-libs-1.21.2-1.fc40.x86_64
libacl-2.3.1-9.fc40.x86_64
libarchive-3.7.2-1.fc40.x86_64
libattr-2.5.1-9.fc40.x86_64
libblkid-2.39.2-1.fc40.x86_64
libbrotli-1.1.0-1.fc40.x86_64
libcap-2.48-7.fc39.x86_64
libcap-ng-0.8.3-8.fc40.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.3.0-1.fc40.x86_64
libdb-5.3.28-58.fc40.x86_64
libeconf-0.5.2-1.fc40.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.2-1.fc40.x86_64
libffi-3.4.4-4.fc39.x86_64
libgcc-13.2.1-1.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.2-1.fc40.x86_64
libnghttp2-1.56.0-1.fc40.x86_64
libnsl2-2.0.0-6.fc39.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
libpwquality-1.4.5-7.fc39.x86_64
libselinux-3.5-5.fc39.x86_64
libsemanage-3.5-4.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
libsmartcols-2.39.2-1.fc40.x86_64
libssh-0.10.5-2.fc39.x86_64
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-1.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.3-1.rc2.fc39.x86_64
libunistring-1.1-5.fc40.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.2-1.fc40.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-2.fc39.x86_64
libxml2-2.11.5-1.fc40.x86_64
libzstd-1.5.5-4.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-1:3.1.1-4.fc40.x86_64
p11-kit-0.25.0-2.fc39.x86_64
p11-kit-trust-0.25.0-2.fc39.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.x86_64
pam-libs-1.5.3-2.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-1.fc39.2.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.x86_64
redhat-rpm-config-266-1.fc40.noarch
rpm-4.18.99-1.fc40.x86_64
rpm-build-4.18.99-1.fc40.x86_64
rpm-build-libs-4.18.99-1.fc40.x86_64
rpm-libs-4.18.99-1.fc40.x86_64
rpm-sequoia-1.5.0-1.fc40.x86_64
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.4-1.fc39.noarch
shadow-utils-2:4.14.0-1.fc40.x86_64
sqlite-libs-3.43.1-1.fc40.x86_64
systemd-libs-254.1-2.fc40.x86_64
tar-2:1.35-2.fc40.x86_64
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.x86_64
util-linux-2.39.2-1.fc40.x86_64
util-linux-core-2.39.2-1.fc40.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
zip-3.0-38.fc39.x86_64
zlib-1.2.13-4.fc39.x86_64
zstd-1.5.5-4.fc39.x86_64
Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.x86_64
authselect-1.4.2-3.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.x86_64
binutils-2.41-5.fc40.x86_64
binutils-gold-2.41-5.fc40.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.x86_64
coreutils-common-9.4-1.fc40.x86_64
cpio-2.14-4.fc39.x86_64
cracklib-2.9.11-2.fc39.x86_64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.x86_64
cyrus-sasl-lib-2.1.28-11.fc39.x86_64
debugedit-5.0-10.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.19-4.fc39.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.x86_64
elfutils-debuginfod-client-0.189-6.fc40.x86_64
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.x86_64
elfutils-libs-0.189-6.fc40.x86_64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.x86_64
file-libs-5.45-1.fc40.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-4.9.0-6.fc40.x86_64
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.x86_64
gdb-minimal-13.2-8.fc40.x86_64
gdbm-libs-1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.x86_64
glibc-common-2.38.9000-8.fc40.x86_64
glibc-gconv-extra-2.38.9000-8.fc40.x86_64
glibc-minimal-langpack-2.38.9000-8.fc40.x86_64
gmp-6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.0.3-3.fc39.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.x86_64
krb5-libs-1.21.2-1.fc40.x86_64
libacl-2.3.1-9.fc40.x86_64
libarchive-3.7.2-1.fc40.x86_64
libattr-2.5.1-9.fc40.x86_64
libblkid-2.39.2-1.fc40.x86_64
libbrotli-1.1.0-1.fc40.x86_64
libcap-2.48-7.fc39.x86_64
libcap-ng-0.8.3-8.fc40.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.3.0-1.fc40.x86_64
libdb-5.3.28-58.fc40.x86_64
libeconf-0.5.2-1.fc40.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.2-1.fc40.x86_64
libffi-3.4.4-4.fc39.x86_64
libgcc-13.2.1-1.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.2-1.fc40.x86_64
libnghttp2-1.56.0-1.fc40.x86_64
libnsl2-2.0.0-6.fc39.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
libpwquality-1.4.5-7.fc39.x86_64
libselinux-3.5-5.fc39.x86_64
libsemanage-3.5-4.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
libsmartcols-2.39.2-1.fc40.x86_64
libssh-0.10.5-2.fc39.x86_64
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-1.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.3-1.rc2.fc39.x86_64
libunistring-1.1-5.fc40.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.2-1.fc40.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-2.fc39.x86_64
libxml2-2.11.5-1.fc40.x86_64
libzstd-1.5.5-4.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-3.1.1-4.fc40.x86_64
p11-kit-0.25.0-2.fc39.x86_64
p11-kit-trust-0.25.0-2.fc39.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.x86_64
pam-libs-1.5.3-2.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-1.fc39.2.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.x86_64
redhat-rpm-config-266-1.fc40.noarch
rpm-4.18.99-1.fc40.x86_64
rpm-build-4.18.99-1.fc40.x86_64
rpm-build-libs-4.18.99-1.fc40.x86_64
rpm-libs-4.18.99-1.fc40.x86_64
rpm-sequoia-1.5.0-1.fc40.x86_64
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.4-1.fc39.noarch
shadow-utils-4.14.0-1.fc40.x86_64
sqlite-libs-3.43.1-1.fc40.x86_64
systemd-libs-254.1-2.fc40.x86_64
tar-1.35-2.fc40.x86_64
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.x86_64
util-linux-2.39.2-1.fc40.x86_64
util-linux-core-2.39.2-1.fc40.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
zip-3.0-38.fc39.x86_64
zlib-1.2.13-4.fc39.x86_64
zstd-1.5.5-4.fc39.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1694995200
Wrote: /builddir/build/SRPMS/snakemake-7.32.4-1.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1695064857.894917/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1695064857.894917/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1695064857.894917/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-o_5xuhg6/snakemake/snakemake.spec) Config(child) 1 minutes 23 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-1.fc40.src.rpm) Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695064857.894917/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695064857.894917/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1695064857.894917/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.18.99-1.fc40.x86_64
rpm-sequoia-1.5.0-1.fc40.x86_64
python3-dnf-4.17.0-1.fc40.noarch
python3-dnf-plugins-core-4.4.2-1.fc39.noarch
yum-4.17.0-1.fc40.noarch
Start: build phase for snakemake-7.32.4-1.fc40.src.rpm
Start: build setup for snakemake-7.32.4-1.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1694995200
Wrote: /builddir/build/SRPMS/snakemake-7.32.4-1.fc40.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 20 kB/s | 2.2 kB 00:00
fedora 492 kB/s | 16 kB 00:00
Dependencies resolved.
====================================================================================================
Package Arch Version Repo Size
====================================================================================================
Installing:
help2man noarch 1.49.3-3.fc39 fedora 228 k
latexmk noarch 4.80-2.fc39 fedora 414 k
librsvg2-tools x86_64 2.56.92-1.fc40 fedora 1.7 M
make x86_64 1:4.4.1-2.fc39 fedora 589 k
python3-boto3 noarch 1.28.49-1.fc40 copr_base 188 k
python3-configargparse noarch 1.7-1.fc40 copr_base 53 k
python3-devel x86_64 3.12.0~rc2-1.fc40 fedora 311 k
python3-pandas x86_64 1.5.3-7.fc39~bootstrap fedora 7.3 M
python3-pytest noarch 7.4.2-1.fc40 copr_base 1.8 M
python3-requests-mock noarch 1.10.0-5.fc39 fedora 61 k
python3-sphinx-latex noarch 1:7.1.2-1.fc40 copr_base 11 k
texlive-xetex x86_64 11:svn66203-77.fc39 fedora 1.3 M
texlive-xindy x86_64 11:svn65958-77.fc39 fedora 1.7 M
vim-filesystem noarch 2:9.0.1882-1.fc40 fedora 18 k
Installing dependencies:
abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k
adobe-mappings-cmap noarch 20230622-1.fc39 fedora 2.1 M
adobe-mappings-cmap-deprecated noarch 20230622-1.fc39 fedora 113 k
adobe-mappings-pdf noarch 20190401-5.fc39 fedora 698 k
at-spi2-core x86_64 2.50.0-1.fc40 fedora 371 k
atk x86_64 2.50.0-1.fc40 fedora 81 k
avahi-libs x86_64 0.8-24.fc39 fedora 67 k
biber noarch 2.19-3.fc39 fedora 292 k
cairo x86_64 1.17.8-5.fc39 fedora 705 k
cairo-gobject x86_64 1.17.8-5.fc39 fedora 18 k
clisp x86_64 2.49.93-34.20230718git6692497.fc40 fedora 6.1 M
cups-libs x86_64 1:2.4.6-6.fc40 fedora 268 k
dbus x86_64 1:1.14.10-1.fc40 fedora 8.1 k
dbus-broker x86_64 33-2.fc39 fedora 173 k
dbus-common noarch 1:1.14.10-1.fc40 fedora 15 k
dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k
default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k
desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k
emacs-filesystem noarch 1:29.1-1.fc39 fedora 8.4 k
expat x86_64 2.5.0-3.fc39 fedora 110 k
fcgi x86_64 2.4.0-47.fc39 fedora 46 k
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python3-pysocks noarch 1.7.1-20.fc39 fedora 39 k
python3-pytz noarch 2023.3.post1-1.fc40 copr_base 59 k
python3-requests noarch 2.28.2-6.fc40 fedora 151 k
python3-rpm-generators noarch 14-7.fc39 fedora 30 k
python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k
python3-s3transfer noarch 0.6.2-1.fc40 fedora 147 k
python3-six noarch 1.16.0-12.fc39 copr_base 41 k
python3-snowballstemmer noarch 2.2.0-7.fc39 fedora 257 k
python3-sphinx noarch 1:7.1.2-1.fc40 copr_base 2.4 M
python3-sphinx-theme-alabaster noarch 0.7.12-20.fc40 copr_base 25 k
python3-sphinxcontrib-applehelp noarch 1.0.6-1.fc40 copr_base 35 k
python3-sphinxcontrib-devhelp noarch 1.0.2-14.fc39 fedora 41 k
python3-sphinxcontrib-htmlhelp noarch 2.0.3-1.fc40 copr_base 44 k
python3-sphinxcontrib-jsmath noarch 1.0.1-22.fc39 fedora 17 k
python3-sphinxcontrib-qthelp noarch 1.0.3-15.fc39 fedora 47 k
python3-sphinxcontrib-serializinghtml noarch 1.1.5-10.fc39 fedora 47 k
python3-urllib3 noarch 1.26.16-3.fc40 copr_base 253 k
python3-urllib3+socks noarch 1.26.16-3.fc40 copr_base 10 k
rav1e-libs x86_64 0.6.6-2.fc39 fedora 1.0 M
rsvg-pixbuf-loader x86_64 2.56.92-1.fc40 fedora 15 k
shared-mime-info x86_64 2.2-4.fc39 fedora 380 k
sombok x86_64 2.4.0-20.fc39 fedora 48 k
svt-av1-libs x86_64 1.4.1-3.fc39 fedora 2.0 M
teckit x86_64 2.5.12-1.fc40 fedora 451 k
tesseract x86_64 5.3.2-3.fc39 fedora 1.3 M
tesseract-langpack-eng noarch 4.1.0-6.fc39 fedora 1.7 M
tesseract-tessdata-doc noarch 4.1.0-6.fc39 fedora 13 k
texlive-ae noarch 11:svn15878.1.4-69.fc39 fedora 116 k
texlive-algorithms noarch 11:svn42428-69.fc39 fedora 23 k
texlive-alphalph noarch 11:svn53087-69.fc39 fedora 361 k
texlive-amscls noarch 11:svn55378-69.fc39 fedora 1.1 M
texlive-amsfonts noarch 11:svn61937-69.fc39 fedora 3.7 M
texlive-amsmath noarch 11:svn63514-69.fc39 fedora 46 k
texlive-anyfontsize noarch 11:svn17050.0-69.fc39 fedora 16 k
texlive-atbegshi noarch 11:svn53051-69.fc39 fedora 409 k
texlive-attachfile noarch 11:svn42099-69.fc39 fedora 22 k
texlive-atveryend noarch 11:svn53108-69.fc39 fedora 385 k
texlive-auto-pst-pdf noarch 11:svn56596-69.fc39 fedora 17 k
texlive-auxhook noarch 11:svn53173-69.fc39 fedora 295 k
texlive-avantgar noarch 11:svn61983-69.fc39 fedora 322 k
texlive-babel noarch 11:svn65823-69.fc39 fedora 480 k
texlive-babel-english noarch 11:svn44495-69.fc39 fedora 21 k
texlive-babelbib noarch 11:svn57349-69.fc39 fedora 54 k
texlive-base x86_64 11:20230311-77.fc39 fedora 2.6 M
texlive-bera noarch 11:svn20031.0-69.fc39 fedora 356 k
texlive-beton noarch 11:svn15878.0-69.fc39 fedora 16 k
texlive-biblatex noarch 11:svn66403-69.fc39 fedora 305 k
texlive-bibtex x86_64 11:svn66186-77.fc39 fedora 451 k
texlive-bidi noarch 11:svn65572-69.fc39 fedora 203 k
texlive-bigintcalc noarch 11:svn53172-69.fc39 fedora 466 k
texlive-bitset noarch 11:svn53837-69.fc39 fedora 620 k
texlive-bookman noarch 11:svn61719-69.fc39 fedora 368 k
texlive-bookmark noarch 11:svn56885-69.fc39 fedora 480 k
texlive-booktabs noarch 11:svn53402-69.fc39 fedora 18 k
texlive-breakurl noarch 11:svn29901.1.40-69.fc39 fedora 17 k
texlive-capt-of noarch 11:svn29803.0-69.fc39 fedora 15 k
texlive-caption noarch 11:svn66580-69.fc39 fedora 87 k
texlive-carlisle noarch 11:svn59577-69.fc39 fedora 23 k
texlive-catchfile noarch 11:svn53084-69.fc39 fedora 307 k
texlive-changepage noarch 11:svn15878.1.0c-69.fc39 fedora 20 k
texlive-charter noarch 11:svn15878.0-69.fc39 fedora 206 k
texlive-cm noarch 11:svn57963-69.fc39 fedora 322 k
texlive-cm-super noarch 11:svn15878.0-69.fc39 fedora 62 M
texlive-cmap noarch 11:svn57640-69.fc39 fedora 21 k
texlive-cmextra noarch 11:svn57866-69.fc39 fedora 49 k
texlive-collection-basic noarch 11:svn59159-69.fc39 fedora 11 k
texlive-collection-fontsrecommended noarch 11:svn54074-69.fc39 fedora 11 k
texlive-collection-latex noarch 11:svn63515-69.fc39 fedora 12 k
texlive-colorprofiles noarch 11:svn49086-69.fc39 fedora 146 k
texlive-colortbl noarch 11:svn64015-69.fc39 fedora 18 k
texlive-courier noarch 11:svn61719-69.fc39 fedora 525 k
texlive-csquotes noarch 11:svn64389-69.fc39 fedora 36 k
texlive-ctablestack noarch 11:svn38514-69.fc39 fedora 18 k
texlive-currfile noarch 11:svn64673-69.fc39 fedora 21 k
texlive-dehyph noarch 11:svn48599-69.fc39 fedora 66 k
texlive-dvipdfmx x86_64 11:svn66203-77.fc39 fedora 3.0 M
texlive-dvipng x86_64 11:svn66203-77.fc39 fedora 315 k
texlive-dvips x86_64 11:svn66203-77.fc39 fedora 738 k
texlive-dvisvgm x86_64 11:svn66532-77.fc39 fedora 1.4 M
texlive-ec noarch 11:svn25033.1.0-69.fc39 fedora 682 k
texlive-enctex noarch 11:svn34957.0-69.fc39 fedora 54 k
texlive-enumitem noarch 11:svn51423-69.fc39 fedora 28 k
texlive-epstopdf noarch 11:svn66461-77.fc39 fedora 30 k
texlive-epstopdf-pkg noarch 11:svn53546-69.fc39 fedora 364 k
texlive-eso-pic noarch 11:svn56658-69.fc39 fedora 19 k
texlive-etex noarch 11:svn66203-69.fc39 fedora 28 k
texlive-etex-pkg noarch 11:svn41784-69.fc39 fedora 17 k
texlive-etexcmds noarch 11:svn53171-69.fc39 fedora 310 k
texlive-etoolbox noarch 11:svn56554-69.fc39 fedora 26 k
texlive-euenc noarch 11:svn19795.0.1h-69.fc39 fedora 22 k
texlive-euler noarch 11:svn42428-69.fc39 fedora 17 k
texlive-euro noarch 11:svn22191.1.1-69.fc39 fedora 17 k
texlive-euro-ce noarch 11:svn25714-69.fc39 fedora 32 k
texlive-eurosym noarch 11:svn17265.1.4_subrfix-69.fc39 fedora 157 k
texlive-everyshi noarch 11:svn57001-69.fc39 fedora 147 k
texlive-fancyhdr noarch 11:svn64977-69.fc39 fedora 20 k
texlive-fancyvrb noarch 11:svn65585-69.fc39 fedora 26 k
texlive-filecontents noarch 11:svn52142-69.fc39 fedora 16 k
texlive-filehook noarch 11:svn64822-69.fc39 fedora 23 k
texlive-firstaid noarch 11:svn64892-69.fc39 fedora 275 k
texlive-fix2col noarch 11:svn38770-69.fc39 fedora 16 k
texlive-float noarch 11:svn15878.1.3d-69.fc39 fedora 17 k
texlive-fncychap noarch 11:svn20710.v1.34-69.fc39 fedora 22 k
texlive-fontspec noarch 11:svn63386-69.fc39 fedora 45 k
texlive-footmisc noarch 11:svn62524-69.fc39 fedora 25 k
texlive-fp noarch 11:svn49719-69.fc39 fedora 36 k
texlive-fpl noarch 11:svn54512-69.fc39 fedora 302 k
texlive-framed noarch 11:svn26789.0.96-69.fc39 fedora 19 k
texlive-geometry noarch 11:svn61719-69.fc39 fedora 23 k
texlive-gettitlestring noarch 11:svn53170-69.fc39 fedora 327 k
texlive-glyphlist noarch 11:svn54074-77.fc39 fedora 38 k
texlive-gnu-freefont noarch 11:svn29349.0-69.fc39 fedora 7.4 M
texlive-graphics noarch 11:svn66204-69.fc39 fedora 40 k
texlive-graphics-cfg noarch 11:svn41448-69.fc39 fedora 13 k
texlive-graphics-def noarch 11:svn64487-69.fc39 fedora 28 k
texlive-grfext noarch 11:svn53024-69.fc39 fedora 317 k
texlive-grffile noarch 11:svn52756-69.fc39 fedora 360 k
texlive-gsftopk x86_64 11:svn52851-77.fc39 fedora 35 k
texlive-helvetic noarch 11:svn61719-69.fc39 fedora 655 k
texlive-hobsub noarch 11:svn52810-69.fc39 fedora 77 k
texlive-hologo noarch 11:svn61719-69.fc39 fedora 586 k
texlive-hopatch noarch 11:svn65491-69.fc39 fedora 328 k
texlive-hycolor noarch 11:svn53584-69.fc39 fedora 384 k
texlive-hypdoc noarch 11:svn65678-69.fc39 fedora 335 k
texlive-hyperref noarch 11:svn65758-69.fc39 fedora 119 k
texlive-hyph-utf8 noarch 11:svn61719-69.fc39 fedora 29 k
texlive-hyphen-base noarch 11:svn66413-69.fc39 fedora 34 k
texlive-hyphenex noarch 11:svn57387-69.fc39 fedora 19 k
texlive-ifmtarg noarch 11:svn47544-69.fc39 fedora 15 k
texlive-ifplatform noarch 11:svn45533-69.fc39 fedora 16 k
texlive-iftex noarch 11:svn61910-69.fc39 fedora 21 k
texlive-index noarch 11:svn24099.4.1beta-69.fc39 fedora 23 k
texlive-infwarerr noarch 11:svn53023-69.fc39 fedora 295 k
texlive-intcalc noarch 11:svn53168-69.fc39 fedora 432 k
texlive-kastrup noarch 11:svn15878.0-69.fc39 fedora 13 k
texlive-knuth-lib noarch 11:svn57963-69.fc39 fedora 52 k
texlive-knuth-local noarch 11:svn57963-69.fc39 fedora 45 k
texlive-koma-script noarch 11:svn64685-69.fc39 fedora 6.4 M
texlive-kpathsea x86_64 11:svn66209-77.fc39 fedora 1.1 M
texlive-kvdefinekeys noarch 11:svn53193-69.fc39 fedora 306 k
texlive-kvoptions noarch 11:svn63622-69.fc39 fedora 494 k
texlive-kvsetkeys noarch 11:svn64632-69.fc39 fedora 398 k
texlive-l3backend noarch 11:svn65573-69.fc39 fedora 897 k
texlive-l3kernel noarch 11:svn66094-69.fc39 fedora 202 k
texlive-l3packages noarch 11:svn65722-69.fc39 fedora 41 k
texlive-latex noarch 11:svn65161-77.fc39 fedora 30 M
texlive-latex-fonts noarch 11:svn28888.0-69.fc39 fedora 50 k
texlive-latex-lab noarch 11:svn64892-69.fc39 fedora 1.8 M
texlive-latexconfig noarch 11:svn53525-69.fc39 fedora 15 k
texlive-letltxmacro noarch 11:svn53022-69.fc39 fedora 300 k
texlive-lib x86_64 11:20230311-77.fc39 fedora 492 k
texlive-listings noarch 11:svn66222-69.fc39 fedora 167 k
texlive-lm noarch 11:svn65956-69.fc39 fedora 12 M
texlive-lm-math noarch 11:svn36915.1.959-69.fc39 fedora 447 k
texlive-logreq noarch 11:svn53003-69.fc39 fedora 20 k
texlive-ltxcmds noarch 11:svn56421-69.fc39 fedora 400 k
texlive-ltxmisc noarch 11:svn21927.0-69.fc39 fedora 28 k
texlive-lua-alt-getopt noarch 11:svn56414-69.fc39 fedora 13 k
texlive-lua-uni-algos noarch 11:svn62204-69.fc39 fedora 97 k
texlive-luabidi noarch 11:svn54512-69.fc39 fedora 20 k
texlive-luahbtex x86_64 11:svn66186-77.fc39 fedora 2.0 M
texlive-lualatex-math noarch 11:svn61464-69.fc39 fedora 20 k
texlive-lualibs noarch 11:svn64615-69.fc39 fedora 160 k
texlive-luaotfload noarch 11:svn64616-77.fc39 fedora 1.2 M
texlive-luatex x86_64 11:svn66967-77.fc39 fedora 3.9 M
texlive-luatex85 noarch 11:svn41456-69.fc39 fedora 19 k
texlive-luatexbase noarch 11:svn52663-69.fc39 fedora 16 k
texlive-makecmds noarch 11:svn15878.0-69.fc39 fedora 15 k
texlive-makeindex x86_64 11:svn62517-77.fc39 fedora 436 k
texlive-manfnt-font noarch 11:svn45777-69.fc39 fedora 37 k
texlive-marginnote noarch 11:svn48383-69.fc39 fedora 17 k
texlive-marvosym noarch 11:svn29349.2.2a-69.fc39 fedora 146 k
texlive-mathpazo noarch 11:svn52663-69.fc39 fedora 90 k
texlive-memoir noarch 11:svn65040-69.fc39 fedora 94 k
texlive-metafont x86_64 11:svn66186-77.fc39 fedora 268 k
texlive-mflogo noarch 11:svn42428-69.fc39 fedora 16 k
texlive-mflogo-font noarch 11:svn54512-69.fc39 fedora 32 k
texlive-mfnfss noarch 11:svn46036-69.fc39 fedora 17 k
texlive-mfware x86_64 11:svn66186-77.fc39 fedora 101 k
texlive-minitoc noarch 11:svn61719-69.fc39 fedora 122 k
texlive-modes noarch 11:svn61719-69.fc39 fedora 306 k
texlive-mparhack noarch 11:svn59066-69.fc39 fedora 18 k
texlive-mptopdf noarch 11:svn65952-77.fc39 fedora 52 k
texlive-ms noarch 11:svn57473-69.fc39 fedora 17 k
texlive-multido noarch 11:svn18302.1.42-69.fc39 fedora 18 k
texlive-natbib noarch 11:svn20668.8.31b-69.fc39 fedora 31 k
texlive-ncntrsbk noarch 11:svn61719-69.fc39 fedora 363 k
texlive-needspace noarch 11:svn29601.1.3d-69.fc39 fedora 15 k
texlive-notoccite noarch 11:svn18129.0-69.fc39 fedora 13 k
texlive-oberdiek noarch 11:svn65521-77.fc39 fedora 7.7 M
texlive-pagesel noarch 11:svn56105-69.fc39 fedora 340 k
texlive-palatino noarch 11:svn61719-69.fc39 fedora 423 k
texlive-paralist noarch 11:svn43021-69.fc39 fedora 18 k
texlive-parallel noarch 11:svn15878.0-69.fc39 fedora 18 k
texlive-parskip noarch 11:svn58358-69.fc39 fedora 17 k
texlive-pdfcol noarch 11:svn64469-69.fc39 fedora 327 k
texlive-pdfcolmk noarch 11:svn52912-69.fc39 fedora 18 k
texlive-pdfescape noarch 11:svn53082-69.fc39 fedora 353 k
texlive-pdftex x86_64 11:svn66243-77.fc39 fedora 2.5 M
texlive-pdftexcmds noarch 11:svn55777-69.fc39 fedora 391 k
texlive-pgf noarch 11:svn65553-69.fc39 fedora 897 k
texlive-picture noarch 11:svn54867-69.fc39 fedora 312 k
texlive-placeins noarch 11:svn19848.2.2-69.fc39 fedora 13 k
texlive-plain noarch 11:svn57963-69.fc39 fedora 48 k
texlive-polyglossia noarch 11:svn65792-69.fc39 fedora 220 k
texlive-pslatex noarch 11:svn57434-69.fc39 fedora 22 k
texlive-psnfss noarch 11:svn54694-69.fc39 fedora 60 k
texlive-pspicture noarch 11:svn15878.0-69.fc39 fedora 16 k
texlive-pst-3d noarch 11:svn17257.1.10-69.fc39 fedora 18 k
texlive-pst-coil noarch 11:svn62977-69.fc39 fedora 18 k
texlive-pst-eps noarch 11:svn15878.1.0-69.fc39 fedora 17 k
texlive-pst-fill noarch 11:svn60671-69.fc39 fedora 18 k
texlive-pst-grad noarch 11:svn15878.1.06-69.fc39 fedora 18 k
texlive-pst-math noarch 11:svn64732-69.fc39 fedora 20 k
texlive-pst-node noarch 11:svn61838-69.fc39 fedora 40 k
texlive-pst-ovl noarch 11:svn54963-69.fc39 fedora 16 k
texlive-pst-plot noarch 11:svn65346-69.fc39 fedora 37 k
texlive-pst-text noarch 11:svn49542-69.fc39 fedora 19 k
texlive-pst-tools noarch 11:svn60621-69.fc39 fedora 21 k
texlive-pst-tree noarch 11:svn60421-69.fc39 fedora 21 k
texlive-pstricks noarch 11:svn65346-69.fc39 fedora 117 k
texlive-pstricks-add noarch 11:svn65067-69.fc39 fedora 37 k
texlive-pxfonts noarch 11:svn15878.0-69.fc39 fedora 523 k
texlive-ragged2e noarch 11:svn66152-69.fc39 fedora 682 k
texlive-refcount noarch 11:svn53164-69.fc39 fedora 335 k
texlive-rerunfilecheck noarch 11:svn63869-69.fc39 fedora 341 k
texlive-rsfs noarch 11:svn15878.0-69.fc39 fedora 73 k
texlive-sauerj noarch 11:svn15878.0-69.fc39 fedora 20 k
texlive-setspace noarch 11:svn65206-69.fc39 fedora 18 k
texlive-showexpl noarch 11:svn57414-69.fc39 fedora 18 k
texlive-stringenc noarch 11:svn52982-69.fc39 fedora 702 k
texlive-subfig noarch 11:svn15878.1.3-69.fc39 fedora 21 k
texlive-symbol noarch 11:svn61719-69.fc39 fedora 54 k
texlive-tabulary noarch 11:svn34368.0.10-69.fc39 fedora 18 k
texlive-tex x86_64 11:svn66186-77.fc39 fedora 212 k
texlive-tex-gyre noarch 11:svn65956-69.fc39 fedora 8.0 M
texlive-tex-gyre-math noarch 11:svn41264-69.fc39 fedora 1.4 M
texlive-tex-ini-files noarch 11:svn40533-69.fc39 fedora 15 k
texlive-texlive-common-doc noarch 11:svn54176-69.fc39 fedora 158 k
texlive-texlive-en noarch 11:svn66572-77.fc39 fedora 2.0 M
texlive-texlive-msg-translations noarch 11:svn66593-69.fc39 fedora 165 k
texlive-texlive-scripts noarch 11:svn66584-77.fc39 fedora 122 k
texlive-texlive.infra noarch 11:svn66512-77.fc39 fedora 295 k
texlive-times noarch 11:svn61719-69.fc39 fedora 368 k
texlive-tipa noarch 11:svn29349.1.3-69.fc39 fedora 2.8 M
texlive-titlesec noarch 11:svn59845-69.fc39 fedora 34 k
texlive-tools noarch 11:svn64892-69.fc39 fedora 75 k
texlive-txfonts noarch 11:svn15878.0-69.fc39 fedora 816 k
texlive-ucharcat noarch 11:svn38907-69.fc39 fedora 15 k
texlive-ucs noarch 11:svn64114-69.fc39 fedora 423 k
texlive-underscore noarch 11:svn18261.0-69.fc39 fedora 19 k
texlive-unicode-data noarch 11:svn64423-69.fc39 fedora 371 k
texlive-unicode-math noarch 11:svn61719-69.fc39 fedora 63 k
texlive-uniquecounter noarch 11:svn53162-69.fc39 fedora 300 k
texlive-upquote noarch 11:svn26059.v1.3-69.fc39 fedora 17 k
texlive-url noarch 11:svn32528.3.4-69.fc39 fedora 20 k
texlive-utopia noarch 11:svn15878.0-69.fc39 fedora 239 k
texlive-varwidth noarch 11:svn24104.0.92-69.fc39 fedora 18 k
texlive-wasy noarch 11:svn53533-69.fc39 fedora 44 k
texlive-wasy-type1 noarch 11:svn53534-69.fc39 fedora 272 k
texlive-wasysym noarch 11:svn54080-69.fc39 fedora 18 k
texlive-wrapfig noarch 11:svn61719-69.fc39 fedora 23 k
texlive-xcolor noarch 11:svn63563-69.fc39 fedora 32 k
texlive-xdvi x86_64 11:svn62387-77.fc39 fedora 351 k
texlive-xetexconfig noarch 11:svn45845-69.fc39 fedora 11 k
texlive-xifthen noarch 11:svn38929-69.fc39 fedora 16 k
texlive-xkeyval noarch 11:svn63616-69.fc39 fedora 27 k
texlive-xpatch noarch 11:svn54563-69.fc39 fedora 19 k
texlive-xstring noarch 11:svn65551-69.fc39 fedora 25 k
texlive-xunicode noarch 11:svn30466.0.981-69.fc39 fedora 44 k
texlive-zapfchan noarch 11:svn61719-69.fc39 fedora 109 k
texlive-zapfding noarch 11:svn61719-69.fc39 fedora 64 k
texlive-zref noarch 11:svn62977-69.fc39 fedora 688 k
urw-base35-bookman-fonts noarch 20200910-18.fc39 fedora 847 k
urw-base35-c059-fonts noarch 20200910-18.fc39 fedora 874 k
urw-base35-d050000l-fonts noarch 20200910-18.fc39 fedora 76 k
urw-base35-fonts noarch 20200910-18.fc39 fedora 10 k
urw-base35-fonts-common noarch 20200910-18.fc39 fedora 21 k
urw-base35-gothic-fonts noarch 20200910-18.fc39 fedora 643 k
urw-base35-nimbus-mono-ps-fonts noarch 20200910-18.fc39 fedora 795 k
urw-base35-nimbus-roman-fonts noarch 20200910-18.fc39 fedora 856 k
urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 fedora 1.3 M
urw-base35-p052-fonts noarch 20200910-18.fc39 fedora 974 k
urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 fedora 42 k
urw-base35-z003-fonts noarch 20200910-18.fc39 fedora 276 k
xdg-utils noarch 1.1.3-15.fc40 fedora 77 k
xml-common noarch 0.6.3-61.fc39 fedora 31 k
xpdf-libs x86_64 1:4.04-10.fc39 fedora 647 k
xprop x86_64 1.2.5-4.fc39 fedora 35 k
zziplib x86_64 0.13.72-5.fc39 fedora 86 k
Transaction Summary
====================================================================================================
Install 675 Packages
Total download size: 377 M
Installed size: 1.1 G
Downloading Packages:
(1/675): gumbo-parser-0.10.1-29.fc39.x86_64.rpm 2.6 MB/s | 136 kB 00:00
(2/675): python3-boto3-1.28.49-1.fc40.noarch.rp 8.9 MB/s | 188 kB 00:00
(3/675): libsvm-3.32-2.fc39.x86_64.rpm 4.4 MB/s | 332 kB 00:00
(4/675): python3-configargparse-1.7-1.fc40.noar 3.9 MB/s | 53 kB 00:00
(5/675): python-pip-wheel-23.2.1-1.fc39.noarch. 16 MB/s | 1.5 MB 00:00
(6/675): python3-docutils-0.20.1-1.fc40.noarch. 38 MB/s | 995 kB 00:00
(7/675): python3-pluggy-1.2.0-1.fc39.noarch.rpm 540 kB/s | 49 kB 00:00
(8/675): python3-numpy-1.24.4-2.fc39.x86_64.rpm 55 MB/s | 7.5 MB 00:00
(9/675): python3-botocore-1.31.49-1.fc40.noarch 28 MB/s | 6.2 MB 00:00
(10/675): python3-pygments-2.16.1-1.fc40.noarch 18 MB/s | 2.3 MB 00:00
(11/675): python3-pytz-2023.3.post1-1.fc40.noar 1.3 MB/s | 59 kB 00:00
(12/675): python3-pytest-7.4.2-1.fc40.noarch.rp 16 MB/s | 1.8 MB 00:00
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(14/675): python3-sphinx-latex-7.1.2-1.fc40.noa 348 kB/s | 11 kB 00:00
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Verifying : libXmu-1.1.4-4.fc40.x86_64 93/675
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Verifying : libXrandr-1.5.2-12.fc40.x86_64 95/675
Verifying : libXrender-0.9.11-4.fc40.x86_64 96/675
Verifying : libXt-1.2.1-6.fc40.x86_64 97/675
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Verifying : libXxf86vm-1.1.5-4.fc40.x86_64 99/675
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Verifying : libgfortran-13.2.1-1.fc39.x86_64 106/675
Verifying : libglade2-2.6.4-30.fc39.x86_64 107/675
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Verifying : libimagequant-4.0.1-5.fc39.x86_64 113/675
Verifying : libjpeg-turbo-2.1.4-3.fc39.x86_64 114/675
Verifying : libjxl-1:0.8.2-3.fc40.x86_64 115/675
Verifying : liblerc-4.0.0-4.fc39.x86_64 116/675
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Verifying : perl-Data-Uniqid-0.12-31.fc39.noarch 168/675
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Verifying : perl-File-ShareDir-1.118-9.fc39.noarch 209/675
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Verifying : urw-base35-d050000l-fonts-20200910-18.fc39.noarc 660/675
Verifying : urw-base35-fonts-20200910-18.fc39.noarch 661/675
Verifying : urw-base35-fonts-common-20200910-18.fc39.noarch 662/675
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Verifying : urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 666/675
Verifying : urw-base35-p052-fonts-20200910-18.fc39.noarch 667/675
Verifying : urw-base35-standard-symbols-ps-fonts-20200910-18 668/675
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Verifying : xdg-utils-1.1.3-15.fc40.noarch 671/675
Verifying : xml-common-0.6.3-61.fc39.noarch 672/675
Verifying : xpdf-libs-1:4.04-10.fc39.x86_64 673/675
Verifying : xprop-1.2.5-4.fc39.x86_64 674/675
Verifying : zziplib-0.13.72-5.fc39.x86_64 675/675
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python3-jmespath-1.0.1-4.fc39.noarch
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python3-markupsafe-2.1.3-2.fc39.x86_64
python3-numpy-1:1.24.4-2.fc39.x86_64
python3-packaging-23.1-5.fc40.noarch
python3-pandas-1.5.3-7.fc39~bootstrap.x86_64
python3-pluggy-1.2.0-1.fc39.noarch
python3-pygments-2.16.1-1.fc40.noarch
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python3-pytest-7.4.2-1.fc40.noarch
python3-pytz-2023.3.post1-1.fc40.noarch
python3-requests-2.28.2-6.fc40.noarch
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python3-rpm-generators-14-7.fc39.noarch
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python3-snowballstemmer-2.2.0-7.fc39.noarch
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python3-sphinx-latex-1:7.1.2-1.fc40.noarch
python3-sphinx-theme-alabaster-0.7.12-20.fc40.noarch
python3-sphinxcontrib-applehelp-1.0.6-1.fc40.noarch
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python3-sphinxcontrib-htmlhelp-2.0.3-1.fc40.noarch
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python3-sphinxcontrib-qthelp-1.0.3-15.fc39.noarch
python3-sphinxcontrib-serializinghtml-1.1.5-10.fc39.noarch
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python3-urllib3+socks-1.26.16-3.fc40.noarch
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rsvg-pixbuf-loader-2.56.92-1.fc40.x86_64
shared-mime-info-2.2-4.fc39.x86_64
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texlive-pst-fill-11:svn60671-69.fc39.noarch
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texlive-pst-node-11:svn61838-69.fc39.noarch
texlive-pst-ovl-11:svn54963-69.fc39.noarch
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texlive-pst-tools-11:svn60621-69.fc39.noarch
texlive-pst-tree-11:svn60421-69.fc39.noarch
texlive-pstricks-11:svn65346-69.fc39.noarch
texlive-pstricks-add-11:svn65067-69.fc39.noarch
texlive-pxfonts-11:svn15878.0-69.fc39.noarch
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texlive-symbol-11:svn61719-69.fc39.noarch
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texlive-tex-gyre-11:svn65956-69.fc39.noarch
texlive-tex-gyre-math-11:svn41264-69.fc39.noarch
texlive-tex-ini-files-11:svn40533-69.fc39.noarch
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texlive-xindy-11:svn65958-77.fc39.x86_64
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texlive-xpatch-11:svn54563-69.fc39.noarch
texlive-xstring-11:svn65551-69.fc39.noarch
texlive-xunicode-11:svn30466.0.981-69.fc39.noarch
texlive-zapfchan-11:svn61719-69.fc39.noarch
texlive-zapfding-11:svn61719-69.fc39.noarch
texlive-zref-11:svn62977-69.fc39.noarch
urw-base35-bookman-fonts-20200910-18.fc39.noarch
urw-base35-c059-fonts-20200910-18.fc39.noarch
urw-base35-d050000l-fonts-20200910-18.fc39.noarch
urw-base35-fonts-20200910-18.fc39.noarch
urw-base35-fonts-common-20200910-18.fc39.noarch
urw-base35-gothic-fonts-20200910-18.fc39.noarch
urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch
urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch
urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch
urw-base35-p052-fonts-20200910-18.fc39.noarch
urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch
urw-base35-z003-fonts-20200910-18.fc39.noarch
vim-filesystem-2:9.0.1882-1.fc40.noarch
xdg-utils-1.1.3-15.fc40.noarch
xml-common-0.6.3-61.fc39.noarch
xpdf-libs-1:4.04-10.fc39.x86_64
xprop-1.2.5-4.fc39.x86_64
zziplib-0.13.72-5.fc39.x86_64
Complete!
Finish: build setup for snakemake-7.32.4-1.fc40.src.rpm
Start: rpmbuild snakemake-7.32.4-1.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1694995200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.t6VzuV
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.4
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.4
+ rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./.github/workflows/scripts')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
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recursedown('./tests/test_pipes_multiple/expected-results')
recursedown('./tests/test_prebuilt_conda_script')
recursedown('./tests/test_prebuilt_conda_script/dummy_package')
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src')
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy')
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy.egg-info')
recursedown('./tests/test_prebuilt_conda_script/expected-results')
recursedown('./tests/test_profile')
recursedown('./tests/test_profile/expected-results')
recursedown('./tests/test_protected_symlink_output')
recursedown('./tests/test_protected_symlink_output/expected-results')
recursedown('./tests/test_r_wrapper')
recursedown('./tests/test_remote')
recursedown('./tests/test_remote/expected-results')
recursedown('./tests/test_remote_auto')
recursedown('./tests/test_remote_auto/expected-results')
recursedown('./tests/test_remote_azure')
recursedown('./tests/test_remote_gs')
recursedown('./tests/test_remote_gs/expected-results')
recursedown('./tests/test_remote_http')
recursedown('./tests/test_remote_http/expected-results')
recursedown('./tests/test_remote_irods')
recursedown('./tests/test_remote_irods/expected-results')
recursedown('./tests/test_remote_irods/setup-data')
recursedown('./tests/test_remote_irods/test-data')
recursedown('./tests/test_remote_log')
recursedown('./tests/test_remote_log/expected-results')
recursedown('./tests/test_remote_ncbi')
recursedown('./tests/test_remote_ncbi/expected-results')
recursedown('./tests/test_remote_ncbi_simple')
recursedown('./tests/test_remote_ncbi_simple/expected-results')
recursedown('./tests/test_remote_sftp')
recursedown('./tests/test_remote_sftp/expected-results')
recursedown('./tests/test_remote_zenodo')
recursedown('./tests/test_remote_zenodo/expected-results')
recursedown('./tests/test_report')
recursedown('./tests/test_report/.snakemake')
recursedown('./tests/test_report/.snakemake/metadata')
recursedown('./tests/test_report/data')
recursedown('./tests/test_report/envs')
recursedown('./tests/test_report/expected-results')
recursedown('./tests/test_report/report')
recursedown('./tests/test_report/testdir')
recursedown('./tests/test_report_dir')
recursedown('./tests/test_report_dir/expected-results')
recursedown('./tests/test_report_dir/test')
recursedown('./tests/test_report_dir/test/js')
recursedown('./tests/test_report_display_code')
recursedown('./tests/test_report_display_code/expected-results')
recursedown('./tests/test_report_zip')
recursedown('./tests/test_report_zip/.snakemake')
recursedown('./tests/test_report_zip/.snakemake/metadata')
recursedown('./tests/test_report_zip/data')
recursedown('./tests/test_report_zip/envs')
recursedown('./tests/test_report_zip/expected-results')
recursedown('./tests/test_report_zip/report')
recursedown('./tests/test_report_zip/testdir')
recursedown('./tests/test_restartable_job_cmd_exit_1')
recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results')
recursedown('./tests/test_restartable_job_qsub_exit_1')
recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results')
recursedown('./tests/test_retries')
recursedown('./tests/test_retries/expected-results')
recursedown('./tests/test_retries_not_overriden')
recursedown('./tests/test_retries_not_overriden/expected-results')
recursedown('./tests/test_rule_defined_in_for_loop')
recursedown('./tests/test_rule_defined_in_for_loop/expected-results')
recursedown('./tests/test_rule_inheritance_globals')
recursedown('./tests/test_rule_inheritance_globals/.snakemake')
recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata')
recursedown('./tests/test_rule_inheritance_globals/expected-results')
recursedown('./tests/test_ruledag')
recursedown('./tests/test_ruledeps')
recursedown('./tests/test_ruledeps/expected-results')
recursedown('./tests/test_run_namedlist')
recursedown('./tests/test_run_namedlist/expected-results')
recursedown('./tests/test_same_wildcard')
recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
./setup.py: no change
./versioneer.py: no change
./.github/workflows/scripts/sacct-proxy.py: updating
./docs/conf.py: updating
./docs/apidocs/conf.py: updating
./examples/hello-world/scripts/plot-hist.py: no change
./snakemake/__init__.py: no change
./snakemake/__main__.py: no change
./snakemake/_version.py: no change
./snakemake/benchmark.py: no change
./snakemake/checkpoints.py: no change
./snakemake/cwl.py: no change
./snakemake/dag.py: no change
./snakemake/decorators.py: no change
./snakemake/exceptions.py: no change
./snakemake/gui.py: no change
./snakemake/interfaces.py: no change
./snakemake/io.py: no change
./snakemake/jobs.py: no change
./snakemake/logging.py: no change
./snakemake/modules.py: no change
./snakemake/notebook.py: no change
./snakemake/output_index.py: no change
./snakemake/parser.py: no change
./snakemake/path_modifier.py: no change
./snakemake/persistence.py: no change
./snakemake/profiles.py: no change
./snakemake/resources.py: no change
./snakemake/ruleinfo.py: no change
./snakemake/rules.py: no change
./snakemake/scheduler.py: no change
./snakemake/script.py: no change
./snakemake/shell.py: no change
./snakemake/sourcecache.py: no change
./snakemake/stats.py: no change
./snakemake/target_jobs.py: no change
./snakemake/utils.py: no change
./snakemake/workflow.py: no change
./snakemake/wrapper.py: no change
./snakemake/caching/__init__.py: no change
./snakemake/caching/hash.py: no change
./snakemake/caching/local.py: no change
./snakemake/caching/remote.py: no change
./snakemake/common/__init__.py: no change
./snakemake/common/tbdstring.py: no change
./snakemake/deployment/__init__.py: no change
./snakemake/deployment/conda.py: no change
./snakemake/deployment/containerize.py: no change
./snakemake/deployment/env_modules.py: no change
./snakemake/deployment/singularity.py: no change
./snakemake/executors/__init__.py: no change
./snakemake/executors/azure_batch.py: no change
./snakemake/executors/common.py: no change
./snakemake/executors/flux.py: no change
./snakemake/executors/ga4gh_tes.py: no change
./snakemake/executors/google_lifesciences.py: no change
./snakemake/executors/google_lifesciences_helper.py: updating
./snakemake/executors/slurm/__init__.py: no change
./snakemake/executors/slurm/slurm_jobstep.py: no change
./snakemake/executors/slurm/slurm_submit.py: no change
./snakemake/linting/__init__.py: no change
./snakemake/linting/links.py: no change
./snakemake/linting/rules.py: no change
./snakemake/linting/snakefiles.py: no change
./snakemake/remote/AzBlob.py: no change
./snakemake/remote/EGA.py: no change
./snakemake/remote/FTP.py: no change
./snakemake/remote/GS.py: no change
./snakemake/remote/HTTP.py: no change
./snakemake/remote/NCBI.py: no change
./snakemake/remote/S3.py: no change
./snakemake/remote/S3Mocked.py: no change
./snakemake/remote/SFTP.py: no change
./snakemake/remote/XRootD.py: no change
./snakemake/remote/__init__.py: no change
./snakemake/remote/dropbox.py: no change
./snakemake/remote/gfal.py: no change
./snakemake/remote/gridftp.py: no change
./snakemake/remote/iRODS.py: no change
./snakemake/remote/webdav.py: no change
./snakemake/remote/zenodo.py: no change
./snakemake/report/__init__.py: no change
./snakemake/report/rulegraph_spec.py: no change
./snakemake/report/data/__init__.py: no change
./snakemake/report/data/categories.py: no change
./snakemake/report/data/common.py: no change
./snakemake/report/data/packages.py: no change
./snakemake/report/data/results.py: no change
./snakemake/report/data/rulegraph.py: no change
./snakemake/report/data/rules.py: no change
./snakemake/report/data/runtimes.py: no change
./snakemake/report/data/timeline.py: no change
./snakemake/report/template/__init__.py: no change
./snakemake/report/template/components/__init__.py: no change
./snakemake/template_rendering/__init__.py: no change
./snakemake/template_rendering/jinja2.py: no change
./snakemake/template_rendering/yte.py: no change
./snakemake/unit_tests/__init__.py: no change
./snakemake/unit_tests/templates/__init__.py: no change
./tests/__init__.py: no change
./tests/common.py: no change
./tests/conftest.py: no change
./tests/test_azure_batch_executor.py: no change
./tests/test_expand.py: no change
./tests/test_google_lifesciences.py: no change
./tests/test_io.py: no change
./tests/test_kubernetes.py: no change
./tests/test_linting.py: no change
./tests/test_persistence.py: no change
./tests/test_schema.py: no change
./tests/test_script.py: no change
./tests/test_slurm.py: no change
./tests/test_tes.py: no change
./tests/test_tibanna.py: no change
./tests/testapi.py: no change
./tests/tests.py: no change
./tests/test14/qsub.py: updating
./tests/test_benchmark/script.py: updating
./tests/test_conda_python_3_7_script/test_script.py: no change
./tests/test_conda_python_script/test_script.py: no change
./tests/test_filegraph/scripts/vis.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change
./tests/test_get_log_both/wrapper.py: no change
./tests/test_get_log_complex/wrapper.py: no change
./tests/test_get_log_none/wrapper.py: no change
./tests/test_get_log_stderr/wrapper.py: no change
./tests/test_get_log_stdout/wrapper.py: no change
./tests/test_github_issue1158/qsub.py: updating
./tests/test_github_issue627/job.py: updating
./tests/test_github_issue_14/local_script.py: no change
./tests/test_github_issue_14/pythonTest.py: updating
./tests/test_handover/script.py: no change
./tests/test_issue1046/my_wrapper/wrapper.py: no change
./tests/test_issue916/local_script.py: no change
./tests/test_issue916/pythonTest.py: updating
./tests/test_job_properties/qsub.py: updating
./tests/test_local_import/bar.py: no change
./tests/test_local_import/foo/__init__.py: no change
./tests/test_paramspace/scripts/simulate.py: no change
./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change
./tests/test_prebuilt_conda_script/test.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change
./tests/test_report_display_code/test.py: no change
./tests/test_restartable_job_cmd_exit_1/qsub.py: updating
./tests/test_restartable_job_qsub_exit_1/qsub.py: updating
./tests/test_script/scripts/test.py: no change
./tests/test_script_py/scripts/test.py: no change
./tests/test_singularity/script.py: no change
./tests/test_singularity_module/script.py: no change
./tests/test_static_remote/S3MockedForStaticTest.py: no change
./tests/test_static_remote/__init__.py: no change
./tests/test_string_resources/qsub.py: updating
./tests/test_tibanna/cleanup.py: no change
./tests/test_tibanna/scripts/step2.py: no change
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
'misc/nano/README.md' -> 'README-nano.md'
'misc/vim/README.md' -> 'README-vim.md'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Or64Im
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.1.2)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement not satisfied: sphinx-argparse
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement not satisfied: sphinx_rtd_theme
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement not satisfied: myst-parser
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling appdirs from requirements file docs/requirements.txt
Requirement not satisfied: appdirs
Exiting dependency generation pass: all requirements files
+ cat /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.4-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 37 kB/s | 2.2 kB 00:00
fedora 406 kB/s | 16 kB 00:00
Package librsvg2-tools-2.56.92-1.fc40.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc39.noarch is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.1.2-1.fc40.noarch is already installed.
Package python3-boto3-1.28.49-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-packaging-23.1-5.fc40.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pytest-7.4.2-1.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed.
Package python3-sphinx-1:7.1.2-1.fc40.noarch is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1882-1.fc40.noarch is already installed.
Dependencies resolved.
=======================================================================================
Package Arch Version Repo Size
=======================================================================================
Installing:
python3-appdirs noarch 1.4.4-11.fc39 copr_base 23 k
python3-myst-parser noarch 2.0.0-2.fc39 fedora 201 k
python3-pip noarch 23.2.1-1.fc39 copr_base 2.9 M
python3-sphinx-argparse noarch 0.4.0-4.fc39 fedora 39 k
python3-sphinx_rtd_theme noarch 1.2.2-1.fc39 copr_base 74 k
Installing dependencies:
fontawesome4-fonts noarch 1:4.7.0-18.fc39 fedora 204 k
google-roboto-slab-fonts noarch 1.100263-0.21.20150923git.fc39 fedora 239 k
lato-fonts noarch 2.015-17.fc39 fedora 3.1 M
libyaml x86_64 0.2.5-12.fc39 fedora 59 k
python3-markdown-it-py noarch 3.0.0-2.fc39 fedora 199 k
python3-mdit-py-plugins noarch 0.4.0-2.fc39 fedora 120 k
python3-mdurl noarch 0.1.2-4.fc39 fedora 31 k
python3-pyyaml x86_64 6.0.1-11.fc39 copr_base 219 k
python3-sphinxcontrib-jquery noarch 4.1-3.fc39 fedora 113 k
Transaction Summary
=======================================================================================
Install 14 Packages
Total download size: 7.5 M
Installed size: 30 M
Downloading Packages:
(1/14): python3-appdirs-1.4.4-11.fc39.noarch.rp 555 kB/s | 23 kB 00:00
(2/14): python3-sphinx_rtd_theme-1.2.2-1.fc39.n 4.0 MB/s | 74 kB 00:00
(3/14): python3-pyyaml-6.0.1-11.fc39.x86_64.rpm 3.4 MB/s | 219 kB 00:00
(4/14): python3-pip-23.2.1-1.fc39.noarch.rpm 24 MB/s | 2.9 MB 00:00
(5/14): fontawesome4-fonts-4.7.0-18.fc39.noarch 935 kB/s | 204 kB 00:00
(6/14): google-roboto-slab-fonts-1.100263-0.21. 983 kB/s | 239 kB 00:00
(7/14): libyaml-0.2.5-12.fc39.x86_64.rpm 1.1 MB/s | 59 kB 00:00
(8/14): python3-markdown-it-py-3.0.0-2.fc39.noa 1.9 MB/s | 199 kB 00:00
(9/14): python3-mdit-py-plugins-0.4.0-2.fc39.no 1.3 MB/s | 120 kB 00:00
(10/14): lato-fonts-2.015-17.fc39.noarch.rpm 8.4 MB/s | 3.1 MB 00:00
(11/14): python3-mdurl-0.1.2-4.fc39.noarch.rpm 350 kB/s | 31 kB 00:00
(12/14): python3-myst-parser-2.0.0-2.fc39.noarc 1.8 MB/s | 201 kB 00:00
(13/14): python3-sphinx-argparse-0.4.0-4.fc39.n 429 kB/s | 39 kB 00:00
(14/14): python3-sphinxcontrib-jquery-4.1-3.fc3 1.0 MB/s | 113 kB 00:00
--------------------------------------------------------------------------------
Total 12 MB/s | 7.5 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-sphinxcontrib-jquery-4.1-3.fc39.noarch 1/14
Installing : python3-mdurl-0.1.2-4.fc39.noarch 2/14
Installing : python3-markdown-it-py-3.0.0-2.fc39.noarch 3/14
Installing : python3-mdit-py-plugins-0.4.0-2.fc39.noarch 4/14
Installing : libyaml-0.2.5-12.fc39.x86_64 5/14
Installing : python3-pyyaml-6.0.1-11.fc39.x86_64 6/14
Installing : lato-fonts-2.015-17.fc39.noarch 7/14
Installing : google-roboto-slab-fonts-1.100263-0.21.20150923git 8/14
Installing : fontawesome4-fonts-1:4.7.0-18.fc39.noarch 9/14
Installing : python3-sphinx_rtd_theme-1.2.2-1.fc39.noarch 10/14
Installing : python3-myst-parser-2.0.0-2.fc39.noarch 11/14
Installing : python3-sphinx-argparse-0.4.0-4.fc39.noarch 12/14
Installing : python3-pip-23.2.1-1.fc39.noarch 13/14
Installing : python3-appdirs-1.4.4-11.fc39.noarch 14/14
Running scriptlet: python3-appdirs-1.4.4-11.fc39.noarch 14/14
Verifying : python3-appdirs-1.4.4-11.fc39.noarch 1/14
Verifying : python3-pip-23.2.1-1.fc39.noarch 2/14
Verifying : python3-pyyaml-6.0.1-11.fc39.x86_64 3/14
Verifying : python3-sphinx_rtd_theme-1.2.2-1.fc39.noarch 4/14
Verifying : fontawesome4-fonts-1:4.7.0-18.fc39.noarch 5/14
Verifying : google-roboto-slab-fonts-1.100263-0.21.20150923git 6/14
Verifying : lato-fonts-2.015-17.fc39.noarch 7/14
Verifying : libyaml-0.2.5-12.fc39.x86_64 8/14
Verifying : python3-markdown-it-py-3.0.0-2.fc39.noarch 9/14
Verifying : python3-mdit-py-plugins-0.4.0-2.fc39.noarch 10/14
Verifying : python3-mdurl-0.1.2-4.fc39.noarch 11/14
Verifying : python3-myst-parser-2.0.0-2.fc39.noarch 12/14
Verifying : python3-sphinx-argparse-0.4.0-4.fc39.noarch 13/14
Verifying : python3-sphinxcontrib-jquery-4.1-3.fc39.noarch 14/14
Installed:
fontawesome4-fonts-1:4.7.0-18.fc39.noarch
google-roboto-slab-fonts-1.100263-0.21.20150923git.fc39.noarch
lato-fonts-2.015-17.fc39.noarch
libyaml-0.2.5-12.fc39.x86_64
python3-appdirs-1.4.4-11.fc39.noarch
python3-markdown-it-py-3.0.0-2.fc39.noarch
python3-mdit-py-plugins-0.4.0-2.fc39.noarch
python3-mdurl-0.1.2-4.fc39.noarch
python3-myst-parser-2.0.0-2.fc39.noarch
python3-pip-23.2.1-1.fc39.noarch
python3-pyyaml-6.0.1-11.fc39.x86_64
python3-sphinx-argparse-0.4.0-4.fc39.noarch
python3-sphinx_rtd_theme-1.2.2-1.fc39.noarch
python3-sphinxcontrib-jquery-4.1-3.fc39.noarch
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1694995200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.H5fzEn
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.4
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.4
+ rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
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recursedown('./misc/vim/ftplugin')
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recursedown('./playground')
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recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
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recursedown('./snakemake/report')
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recursedown('./snakemake/report/template')
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recursedown('./tests/test_restartable_job_cmd_exit_1')
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recursedown('./tests/test_restartable_job_qsub_exit_1')
recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results')
recursedown('./tests/test_retries')
recursedown('./tests/test_retries/expected-results')
recursedown('./tests/test_retries_not_overriden')
recursedown('./tests/test_retries_not_overriden/expected-results')
recursedown('./tests/test_rule_defined_in_for_loop')
recursedown('./tests/test_rule_defined_in_for_loop/expected-results')
recursedown('./tests/test_rule_inheritance_globals')
recursedown('./tests/test_rule_inheritance_globals/.snakemake')
recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata')
recursedown('./tests/test_rule_inheritance_globals/expected-results')
recursedown('./tests/test_ruledag')
recursedown('./tests/test_ruledeps')
recursedown('./tests/test_ruledeps/expected-results')
recursedown('./tests/test_run_namedlist')
recursedown('./tests/test_run_namedlist/expected-results')
recursedown('./tests/test_same_wildcard')
recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
'misc/nano/README.md' -> 'README-nano.md'
'misc/vim/README.md' -> 'README-vim.md'
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.1XKBnc
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.1.2)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement not satisfied: setuptools>=42
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.4-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 64 kB/s | 2.2 kB 00:00
fedora 448 kB/s | 16 kB 00:00
Package librsvg2-tools-2.56.92-1.fc40.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc39.noarch is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.1.2-1.fc40.noarch is already installed.
Package python3-appdirs-1.4.4-11.fc39.noarch is already installed.
Package python3-boto3-1.28.49-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-myst-parser-2.0.0-2.fc39.noarch is already installed.
Package python3-packaging-23.1-5.fc40.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pip-23.2.1-1.fc39.noarch is already installed.
Package python3-pytest-7.4.2-1.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed.
Package python3-sphinx-1:7.1.2-1.fc40.noarch is already installed.
Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed.
Package python3-sphinx_rtd_theme-1.2.2-1.fc39.noarch is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1882-1.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
python3-setuptools noarch 67.7.2-7.fc40 copr_base 1.4 M
Transaction Summary
================================================================================
Install 1 Package
Total download size: 1.4 M
Installed size: 7.0 M
Downloading Packages:
python3-setuptools-67.7.2-7.fc40.noarch.rpm 16 MB/s | 1.4 MB 00:00
--------------------------------------------------------------------------------
Total 15 MB/s | 1.4 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-setuptools-67.7.2-7.fc40.noarch 1/1
Running scriptlet: python3-setuptools-67.7.2-7.fc40.noarch 1/1
Verifying : python3-setuptools-67.7.2-7.fc40.noarch 1/1
Installed:
python3-setuptools-67.7.2-7.fc40.noarch
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1694995200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.PI3SfL
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.4
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.4
+ rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./.github/workflows/scripts')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
recursedown('./docs/tutorial')
recursedown('./docs/tutorial/workflow')
recursedown('./examples')
recursedown('./examples/c')
recursedown('./examples/c/include')
recursedown('./examples/c/src')
recursedown('./examples/cufflinks')
recursedown('./examples/cufflinks/mapped')
recursedown('./examples/flux')
recursedown('./examples/hello-world')
recursedown('./examples/hello-world/envs')
recursedown('./examples/hello-world/scripts')
recursedown('./examples/idea')
recursedown('./examples/latex')
recursedown('./examples/mirna')
recursedown('./images')
recursedown('./misc')
recursedown('./misc/nano')
recursedown('./misc/nano/syntax')
recursedown('./misc/vim')
recursedown('./misc/vim/ftdetect')
recursedown('./misc/vim/ftplugin')
recursedown('./misc/vim/ftplugin/snakemake')
recursedown('./misc/vim/syntax')
recursedown('./playground')
recursedown('./playground/iteration')
recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
recursedown('./snakemake/linting')
recursedown('./snakemake/remote')
recursedown('./snakemake/report')
recursedown('./snakemake/report/data')
recursedown('./snakemake/report/template')
recursedown('./snakemake/report/template/components')
recursedown('./snakemake/template_rendering')
recursedown('./snakemake/unit_tests')
recursedown('./snakemake/unit_tests/templates')
recursedown('./tests')
recursedown('./tests/knapsack')
recursedown('./tests/linting')
recursedown('./tests/linting/absolute_paths')
recursedown('./tests/linting/dynamic')
recursedown('./tests/linting/envvars')
recursedown('./tests/linting/iofile_by_index')
recursedown('./tests/linting/log_directive')
recursedown('./tests/linting/long_run')
recursedown('./tests/linting/missing_software_definition')
recursedown('./tests/linting/mixed_func_and_rules')
recursedown('./tests/linting/not_used_params')
recursedown('./tests/linting/params_prefix')
recursedown('./tests/linting/path_add')
recursedown('./tests/linting/singularity')
recursedown('./tests/linting/tab_usage')
recursedown('./tests/linting/version')
recursedown('./tests/profile')
recursedown('./tests/resources')
recursedown('./tests/resources/slurmcluster')
recursedown("./tests/test (with parenthese's)")
recursedown("./tests/test (with parenthese's)/expected-results")
recursedown('./tests/test01')
recursedown('./tests/test01/expected-results')
recursedown('./tests/test01/expected-results/dir')
recursedown('./tests/test02')
recursedown('./tests/test02/expected-results')
recursedown('./tests/test03')
recursedown('./tests/test03/expected-results')
recursedown('./tests/test04')
recursedown('./tests/test04/expected-results')
recursedown('./tests/test05')
recursedown('./tests/test05/expected-results')
recursedown('./tests/test06')
recursedown('./tests/test06/expected-results')
recursedown('./tests/test07')
recursedown('./tests/test07/expected-results')
recursedown('./tests/test08')
recursedown('./tests/test08/expected-results')
recursedown('./tests/test09')
recursedown('./tests/test09/expected-results')
recursedown('./tests/test10')
recursedown('./tests/test10/expected-results')
recursedown('./tests/test11')
recursedown('./tests/test11/expected-results')
recursedown('./tests/test12')
recursedown('./tests/test12/expected-results')
recursedown('./tests/test13')
recursedown('./tests/test13/expected-results')
recursedown('./tests/test14')
recursedown('./tests/test14/expected-results')
recursedown('./tests/test15')
recursedown('./tests/test15/expected-results')
recursedown('./tests/testHighWorkload')
recursedown('./tests/testHighWorkload/mfa')
recursedown('./tests/test_all_temp')
recursedown('./tests/test_all_temp/expected-results')
recursedown('./tests/test_ancient')
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./snakemake/report/data/categories.py: no change
./snakemake/report/data/common.py: no change
./snakemake/report/data/packages.py: no change
./snakemake/report/data/results.py: no change
./snakemake/report/data/rulegraph.py: no change
./snakemake/report/data/rules.py: no change
./snakemake/report/data/runtimes.py: no change
./snakemake/report/data/timeline.py: no change
./snakemake/report/template/__init__.py: no change
./snakemake/report/template/components/__init__.py: no change
./snakemake/template_rendering/__init__.py: no change
./snakemake/template_rendering/jinja2.py: no change
./snakemake/template_rendering/yte.py: no change
./snakemake/unit_tests/__init__.py: no change
./snakemake/unit_tests/templates/__init__.py: no change
./tests/__init__.py: no change
./tests/common.py: no change
./tests/conftest.py: no change
./tests/test_azure_batch_executor.py: no change
./tests/test_expand.py: no change
./tests/test_google_lifesciences.py: no change
./tests/test_io.py: no change
./tests/test_kubernetes.py: no change
./tests/test_linting.py: no change
./tests/test_persistence.py: no change
./tests/test_schema.py: no change
./tests/test_script.py: no change
./tests/test_slurm.py: no change
./tests/test_tes.py: no change
./tests/test_tibanna.py: no change
./tests/testapi.py: no change
./tests/tests.py: no change
./tests/test14/qsub.py: updating
./tests/test_benchmark/script.py: updating
./tests/test_conda_python_3_7_script/test_script.py: no change
./tests/test_conda_python_script/test_script.py: no change
./tests/test_filegraph/scripts/vis.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change
./tests/test_get_log_both/wrapper.py: no change
./tests/test_get_log_complex/wrapper.py: no change
./tests/test_get_log_none/wrapper.py: no change
./tests/test_get_log_stderr/wrapper.py: no change
./tests/test_get_log_stdout/wrapper.py: no change
./tests/test_github_issue1158/qsub.py: updating
./tests/test_github_issue627/job.py: updating
./tests/test_github_issue_14/local_script.py: no change
./tests/test_github_issue_14/pythonTest.py: updating
./tests/test_handover/script.py: no change
./tests/test_issue1046/my_wrapper/wrapper.py: no change
./tests/test_issue916/local_script.py: no change
./tests/test_issue916/pythonTest.py: updating
./tests/test_job_properties/qsub.py: updating
./tests/test_local_import/bar.py: no change
./tests/test_local_import/foo/__init__.py: no change
./tests/test_paramspace/scripts/simulate.py: no change
./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change
./tests/test_prebuilt_conda_script/test.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change
./tests/test_report_display_code/test.py: no change
./tests/test_restartable_job_cmd_exit_1/qsub.py: updating
./tests/test_restartable_job_qsub_exit_1/qsub.py: updating
./tests/test_script/scripts/test.py: no change
./tests/test_script_py/scripts/test.py: no change
./tests/test_singularity/script.py: no change
./tests/test_singularity_module/script.py: no change
./tests/test_static_remote/S3MockedForStaticTest.py: no change
./tests/test_static_remote/__init__.py: no change
./tests/test_string_resources/qsub.py: updating
./tests/test_tibanna/cleanup.py: no change
./tests/test_tibanna/scripts/step2.py: no change
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src')
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy')
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy.egg-info')
recursedown('./tests/test_prebuilt_conda_script/expected-results')
recursedown('./tests/test_profile')
recursedown('./tests/test_profile/expected-results')
recursedown('./tests/test_protected_symlink_output')
recursedown('./tests/test_protected_symlink_output/expected-results')
recursedown('./tests/test_r_wrapper')
recursedown('./tests/test_remote')
recursedown('./tests/test_remote/expected-results')
recursedown('./tests/test_remote_auto')
recursedown('./tests/test_remote_auto/expected-results')
recursedown('./tests/test_remote_azure')
recursedown('./tests/test_remote_gs')
recursedown('./tests/test_remote_gs/expected-results')
recursedown('./tests/test_remote_http')
recursedown('./tests/test_remote_http/expected-results')
recursedown('./tests/test_remote_irods')
recursedown('./tests/test_remote_irods/expected-results')
recursedown('./tests/test_remote_irods/setup-data')
recursedown('./tests/test_remote_irods/test-data')
recursedown('./tests/test_remote_log')
recursedown('./tests/test_remote_log/expected-results')
recursedown('./tests/test_remote_ncbi')
recursedown('./tests/test_remote_ncbi/expected-results')
recursedown('./tests/test_remote_ncbi_simple')
recursedown('./tests/test_remote_ncbi_simple/expected-results')
recursedown('./tests/test_remote_sftp')
recursedown('./tests/test_remote_sftp/expected-results')
recursedown('./tests/test_remote_zenodo')
recursedown('./tests/test_remote_zenodo/expected-results')
recursedown('./tests/test_report')
recursedown('./tests/test_report/.snakemake')
recursedown('./tests/test_report/.snakemake/metadata')
recursedown('./tests/test_report/data')
recursedown('./tests/test_report/envs')
recursedown('./tests/test_report/expected-results')
recursedown('./tests/test_report/report')
recursedown('./tests/test_report/testdir')
recursedown('./tests/test_report_dir')
recursedown('./tests/test_report_dir/expected-results')
recursedown('./tests/test_report_dir/test')
recursedown('./tests/test_report_dir/test/js')
recursedown('./tests/test_report_display_code')
recursedown('./tests/test_report_display_code/expected-results')
recursedown('./tests/test_report_zip')
recursedown('./tests/test_report_zip/.snakemake')
recursedown('./tests/test_report_zip/.snakemake/metadata')
recursedown('./tests/test_report_zip/data')
recursedown('./tests/test_report_zip/envs')
recursedown('./tests/test_report_zip/expected-results')
recursedown('./tests/test_report_zip/report')
recursedown('./tests/test_report_zip/testdir')
recursedown('./tests/test_restartable_job_cmd_exit_1')
recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results')
recursedown('./tests/test_restartable_job_qsub_exit_1')
recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results')
recursedown('./tests/test_retries')
recursedown('./tests/test_retries/expected-results')
recursedown('./tests/test_retries_not_overriden')
recursedown('./tests/test_retries_not_overriden/expected-results')
recursedown('./tests/test_rule_defined_in_for_loop')
recursedown('./tests/test_rule_defined_in_for_loop/expected-results')
recursedown('./tests/test_rule_inheritance_globals')
recursedown('./tests/test_rule_inheritance_globals/.snakemake')
recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata')
recursedown('./tests/test_rule_inheritance_globals/expected-results')
recursedown('./tests/test_ruledag')
recursedown('./tests/test_ruledeps')
recursedown('./tests/test_ruledeps/expected-results')
recursedown('./tests/test_run_namedlist')
recursedown('./tests/test_run_namedlist/expected-results')
recursedown('./tests/test_same_wildcard')
recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
+ RPM_EC=0
++ jobs -p
+ exit 0
'misc/nano/README.md' -> 'README-nano.md'
'misc/vim/README.md' -> 'README-vim.md'
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.pIrHUV
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.1.2)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
(installed: setuptools 67.7.2)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
running egg_info
creating snakemake.egg-info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
writing manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement not satisfied: wheel
Exiting dependency generation pass: get_requires_for_build_wheel
+ cat /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.4-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 58 kB/s | 2.2 kB 00:00
fedora 469 kB/s | 16 kB 00:00
Package librsvg2-tools-2.56.92-1.fc40.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc39.noarch is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.1.2-1.fc40.noarch is already installed.
Package python3-appdirs-1.4.4-11.fc39.noarch is already installed.
Package python3-boto3-1.28.49-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-myst-parser-2.0.0-2.fc39.noarch is already installed.
Package python3-packaging-23.1-5.fc40.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pip-23.2.1-1.fc39.noarch is already installed.
Package python3-pytest-7.4.2-1.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed.
Package python3-setuptools-67.7.2-7.fc40.noarch is already installed.
Package python3-sphinx-1:7.1.2-1.fc40.noarch is already installed.
Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed.
Package python3-sphinx_rtd_theme-1.2.2-1.fc39.noarch is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1882-1.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
Package Architecture Version Repository Size
================================================================================
Installing:
python3-wheel noarch 1:0.40.0-4.fc39 fedora 161 k
Transaction Summary
================================================================================
Install 1 Package
Total download size: 161 k
Installed size: 503 k
Downloading Packages:
python3-wheel-0.40.0-4.fc39.noarch.rpm 1.3 MB/s | 161 kB 00:00
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Total 1.0 MB/s | 161 kB 00:00
Running transaction check
Transaction check succeeded.
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Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-wheel-1:0.40.0-4.fc39.noarch 1/1
Running scriptlet: python3-wheel-1:0.40.0-4.fc39.noarch 1/1
Verifying : python3-wheel-1:0.40.0-4.fc39.noarch 1/1
Installed:
python3-wheel-1:0.40.0-4.fc39.noarch
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1694995200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.gGu7eI
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.4
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.4
+ rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
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recursedown('./.github/workflows/scripts')
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recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/one/simulations/alpha~2/gamma~3.9')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/plots')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/plots/alpha_is_1')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/plots/alpha_is_1/beta_is_0.1')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/plots/alpha_is_2')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/plots/alpha_is_2/beta_is_0.0')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations/alpha_is_1')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations/alpha_is_1/beta_is_0.1')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations/alpha_is_2')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations/alpha_is_2/beta_is_0.0')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep_and_pattern')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep_and_pattern/plots')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep_and_pattern/simulations')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/plots')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/plots/alpha~1')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/plots/alpha~2')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/simulations')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/simulations/alpha~1')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two/simulations/alpha~2')
recursedown('./tests/test_paramspace_single_wildcard/scripts')
recursedown('./tests/test_parser')
recursedown('./tests/test_parser/expected-results')
recursedown('./tests/test_parsing_terminal_comment_following_statement')
recursedown('./tests/test_parsing_terminal_comment_following_statement/expected-results')
recursedown('./tests/test_pathlib')
recursedown('./tests/test_pathlib/expected-results')
recursedown('./tests/test_pathlib/expected-results/outdir')
recursedown('./tests/test_pathlib/expected-results/outdir/function_unpacking')
recursedown('./tests/test_pathlib_missing_file')
recursedown('./tests/test_pathlib_missing_file/expected-results')
recursedown('./tests/test_peppy')
recursedown('./tests/test_peppy/expected-results')
recursedown('./tests/test_peppy/pep')
recursedown('./tests/test_peppy/workflow')
recursedown('./tests/test_peppy/workflow/schemas')
recursedown('./tests/test_persistent_dict')
recursedown('./tests/test_persistent_dict/expected-results')
recursedown('./tests/test_pipe_depend')
recursedown('./tests/test_pipe_depend/expected-results')
recursedown('./tests/test_pipes')
recursedown('./tests/test_pipes/expected-results')
recursedown('./tests/test_pipes2')
recursedown('./tests/test_pipes2/expected-results')
recursedown('./tests/test_pipes_fail')
recursedown('./tests/test_pipes_fail/expected-results')
recursedown('./tests/test_pipes_multiple')
recursedown('./tests/test_pipes_multiple/expected-results')
recursedown('./tests/test_prebuilt_conda_script')
recursedown('./tests/test_prebuilt_conda_script/dummy_package')
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src')
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy')
recursedown('./tests/test_prebuilt_conda_script/dummy_package/src/dummy.egg-info')
recursedown('./tests/test_prebuilt_conda_script/expected-results')
recursedown('./tests/test_profile')
recursedown('./tests/test_profile/expected-results')
recursedown('./tests/test_protected_symlink_output')
recursedown('./tests/test_protected_symlink_output/expected-results')
recursedown('./tests/test_r_wrapper')
recursedown('./tests/test_remote')
recursedown('./tests/test_remote/expected-results')
recursedown('./tests/test_remote_auto')
recursedown('./tests/test_remote_auto/expected-results')
recursedown('./tests/test_remote_azure')
recursedown('./tests/test_remote_gs')
recursedown('./tests/test_remote_gs/expected-results')
recursedown('./tests/test_remote_http')
recursedown('./tests/test_remote_http/expected-results')
recursedown('./tests/test_remote_irods')
recursedown('./tests/test_remote_irods/expected-results')
recursedown('./tests/test_remote_irods/setup-data')
recursedown('./tests/test_remote_irods/test-data')
recursedown('./tests/test_remote_log')
recursedown('./tests/test_remote_log/expected-results')
recursedown('./tests/test_remote_ncbi')
recursedown('./tests/test_remote_ncbi/expected-results')
recursedown('./tests/test_remote_ncbi_simple')
recursedown('./tests/test_remote_ncbi_simple/expected-results')
recursedown('./tests/test_remote_sftp')
recursedown('./tests/test_remote_sftp/expected-results')
recursedown('./tests/test_remote_zenodo')
recursedown('./tests/test_remote_zenodo/expected-results')
recursedown('./tests/test_report')
recursedown('./tests/test_report/.snakemake')
recursedown('./tests/test_report/.snakemake/metadata')
recursedown('./tests/test_report/data')
recursedown('./tests/test_report/envs')
recursedown('./tests/test_report/expected-results')
recursedown('./tests/test_report/report')
recursedown('./tests/test_report/testdir')
recursedown('./tests/test_report_dir')
recursedown('./tests/test_report_dir/expected-results')
recursedown('./tests/test_report_dir/test')
recursedown('./tests/test_report_dir/test/js')
recursedown('./tests/test_report_display_code')
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recursedown('./tests/test_report_zip')
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recursedown('./tests/test_report_zip/data')
recursedown('./tests/test_report_zip/envs')
recursedown('./tests/test_report_zip/expected-results')
recursedown('./tests/test_report_zip/report')
recursedown('./tests/test_report_zip/testdir')
recursedown('./tests/test_restartable_job_cmd_exit_1')
recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results')
recursedown('./tests/test_restartable_job_qsub_exit_1')
recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results')
recursedown('./tests/test_retries')
recursedown('./tests/test_retries/expected-results')
recursedown('./tests/test_retries_not_overriden')
recursedown('./tests/test_retries_not_overriden/expected-results')
recursedown('./tests/test_rule_defined_in_for_loop')
recursedown('./tests/test_rule_defined_in_for_loop/expected-results')
recursedown('./tests/test_rule_inheritance_globals')
recursedown('./tests/test_rule_inheritance_globals/.snakemake')
recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata')
recursedown('./tests/test_rule_inheritance_globals/expected-results')
recursedown('./tests/test_ruledag')
recursedown('./tests/test_ruledeps')
recursedown('./tests/test_ruledeps/expected-results')
recursedown('./tests/test_run_namedlist')
recursedown('./tests/test_run_namedlist/expected-results')
recursedown('./tests/test_same_wildcard')
recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
./setup.py: no change
./versioneer.py: no change
./.github/workflows/scripts/sacct-proxy.py: updating
./docs/conf.py: updating
./docs/apidocs/conf.py: updating
./examples/hello-world/scripts/plot-hist.py: no change
./snakemake/__init__.py: no change
./snakemake/__main__.py: no change
./snakemake/_version.py: no change
./snakemake/benchmark.py: no change
./snakemake/checkpoints.py: no change
./snakemake/cwl.py: no change
./snakemake/dag.py: no change
./snakemake/decorators.py: no change
./snakemake/exceptions.py: no change
./snakemake/gui.py: no change
./snakemake/interfaces.py: no change
./snakemake/io.py: no change
./snakemake/jobs.py: no change
./snakemake/logging.py: no change
./snakemake/modules.py: no change
./snakemake/notebook.py: no change
./snakemake/output_index.py: no change
./snakemake/parser.py: no change
./snakemake/path_modifier.py: no change
./snakemake/persistence.py: no change
./snakemake/profiles.py: no change
./snakemake/resources.py: no change
./snakemake/ruleinfo.py: no change
./snakemake/rules.py: no change
./snakemake/scheduler.py: no change
./snakemake/script.py: no change
./snakemake/shell.py: no change
./snakemake/sourcecache.py: no change
./snakemake/stats.py: no change
./snakemake/target_jobs.py: no change
./snakemake/utils.py: no change
./snakemake/workflow.py: no change
./snakemake/wrapper.py: no change
./snakemake/caching/__init__.py: no change
./snakemake/caching/hash.py: no change
./snakemake/caching/local.py: no change
./snakemake/caching/remote.py: no change
./snakemake/common/__init__.py: no change
./snakemake/common/tbdstring.py: no change
./snakemake/deployment/__init__.py: no change
./snakemake/deployment/conda.py: no change
./snakemake/deployment/containerize.py: no change
./snakemake/deployment/env_modules.py: no change
./snakemake/deployment/singularity.py: no change
./snakemake/executors/__init__.py: no change
./snakemake/executors/azure_batch.py: no change
./snakemake/executors/common.py: no change
./snakemake/executors/flux.py: no change
./snakemake/executors/ga4gh_tes.py: no change
./snakemake/executors/google_lifesciences.py: no change
./snakemake/executors/google_lifesciences_helper.py: updating
./snakemake/executors/slurm/__init__.py: no change
./snakemake/executors/slurm/slurm_jobstep.py: no change
./snakemake/executors/slurm/slurm_submit.py: no change
./snakemake/linting/__init__.py: no change
./snakemake/linting/links.py: no change
./snakemake/linting/rules.py: no change
./snakemake/linting/snakefiles.py: no change
./snakemake/remote/AzBlob.py: no change
./snakemake/remote/EGA.py: no change
./snakemake/remote/FTP.py: no change
./snakemake/remote/GS.py: no change
./snakemake/remote/HTTP.py: no change
./snakemake/remote/NCBI.py: no change
./snakemake/remote/S3.py: no change
./snakemake/remote/S3Mocked.py: no change
./snakemake/remote/SFTP.py: no change
./snakemake/remote/XRootD.py: no change
./snakemake/remote/__init__.py: no change
./snakemake/remote/dropbox.py: no change
./snakemake/remote/gfal.py: no change
./snakemake/remote/gridftp.py: no change
./snakemake/remote/iRODS.py: no change
./snakemake/remote/webdav.py: no change
./snakemake/remote/zenodo.py: no change
./snakemake/report/__init__.py: no change
./snakemake/report/rulegraph_spec.py: no change
./snakemake/report/data/__init__.py: no change
./snakemake/report/data/categories.py: no change
./snakemake/report/data/common.py: no change
./snakemake/report/data/packages.py: no change
./snakemake/report/data/results.py: no change
./snakemake/report/data/rulegraph.py: no change
./snakemake/report/data/rules.py: no change
./snakemake/report/data/runtimes.py: no change
./snakemake/report/data/timeline.py: no change
./snakemake/report/template/__init__.py: no change
./snakemake/report/template/components/__init__.py: no change
./snakemake/template_rendering/__init__.py: no change
./snakemake/template_rendering/jinja2.py: no change
./snakemake/template_rendering/yte.py: no change
./snakemake/unit_tests/__init__.py: no change
./snakemake/unit_tests/templates/__init__.py: no change
./tests/__init__.py: no change
./tests/common.py: no change
./tests/conftest.py: no change
./tests/test_azure_batch_executor.py: no change
./tests/test_expand.py: no change
./tests/test_google_lifesciences.py: no change
./tests/test_io.py: no change
./tests/test_kubernetes.py: no change
./tests/test_linting.py: no change
./tests/test_persistence.py: no change
./tests/test_schema.py: no change
./tests/test_script.py: no change
./tests/test_slurm.py: no change
./tests/test_tes.py: no change
./tests/test_tibanna.py: no change
./tests/testapi.py: no change
./tests/tests.py: no change
./tests/test14/qsub.py: updating
./tests/test_benchmark/script.py: updating
./tests/test_conda_python_3_7_script/test_script.py: no change
./tests/test_conda_python_script/test_script.py: no change
./tests/test_filegraph/scripts/vis.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change
./tests/test_get_log_both/wrapper.py: no change
./tests/test_get_log_complex/wrapper.py: no change
./tests/test_get_log_none/wrapper.py: no change
./tests/test_get_log_stderr/wrapper.py: no change
./tests/test_get_log_stdout/wrapper.py: no change
./tests/test_github_issue1158/qsub.py: updating
./tests/test_github_issue627/job.py: updating
./tests/test_github_issue_14/local_script.py: no change
./tests/test_github_issue_14/pythonTest.py: updating
./tests/test_handover/script.py: no change
./tests/test_issue1046/my_wrapper/wrapper.py: no change
./tests/test_issue916/local_script.py: no change
./tests/test_issue916/pythonTest.py: updating
./tests/test_job_properties/qsub.py: updating
./tests/test_local_import/bar.py: no change
./tests/test_local_import/foo/__init__.py: no change
./tests/test_paramspace/scripts/simulate.py: no change
./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change
./tests/test_prebuilt_conda_script/test.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change
./tests/test_report_display_code/test.py: no change
./tests/test_restartable_job_cmd_exit_1/qsub.py: updating
./tests/test_restartable_job_qsub_exit_1/qsub.py: updating
./tests/test_script/scripts/test.py: no change
./tests/test_script_py/scripts/test.py: no change
./tests/test_singularity/script.py: no change
./tests/test_singularity_module/script.py: no change
./tests/test_static_remote/S3MockedForStaticTest.py: no change
./tests/test_static_remote/__init__.py: no change
./tests/test_string_resources/qsub.py: updating
./tests/test_tibanna/cleanup.py: no change
./tests/test_tibanna/scripts/step2.py: no change
'misc/nano/README.md' -> 'README-nano.md'
'misc/vim/README.md' -> 'README-vim.md'
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ChdIOQ
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.1.2)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
(installed: setuptools 67.7.2)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
running egg_info
creating snakemake.egg-info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
writing manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.40.0)
running dist_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling connection-pool (>=0.0.3) from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: connection-pool (>=0.0.3)
Handling datrie from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: datrie
Handling docutils from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling gitpython from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: gitpython
Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: humanfriendly
Handling jinja2 (<4.0,>=3.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jinja2 (<4.0,>=3.0)
(installed: jinja2 3.1.2)
Handling jsonschema from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: jsonschema
Handling nbformat from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: nbformat
Handling packaging from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: packaging
(installed: packaging 23.1)
Handling psutil from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: psutil
Handling pulp (>=2.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: pulp (>=2.0)
Handling pyyaml from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pyyaml
(installed: pyyaml 6.0.1)
Handling requests from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: requests
(installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: reretry
Handling smart-open (>=3.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: smart-open (>=3.0)
Handling stopit from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: stopit
Handling tabulate from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: tabulate
Handling throttler from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: throttler
Handling toposort (>=1.10) from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: toposort (>=1.10)
Handling wrapt from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: wrapt
Handling yte (<2.0,>=1.5.1) from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: yte (<2.0,>=1.5.1)
Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-storage-blob ; extra == 'azure'
Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-batch ; extra == 'azure'
Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-core ; extra == 'azure'
Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-identity ; extra == 'azure'
Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-mgmt-batch ; extra == 'azure'
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: google-api-python-client ; extra == 'google-cloud'
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: google-cloud-storage ; extra == 'google-cloud'
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: google-crc32c ; extra == 'google-cloud'
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: oauth2client ; extra == 'google-cloud'
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: slacker ; extra == 'messaging'
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pygments ; extra == 'reports'
(installed: pygments 2.16.1)
+ cat /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv snakemake-7.32.4.dist-info/
removed 'snakemake-7.32.4.dist-info/AUTHORS.rst'
removed 'snakemake-7.32.4.dist-info/LICENSE.md'
removed 'snakemake-7.32.4.dist-info/METADATA'
removed 'snakemake-7.32.4.dist-info/entry_points.txt'
removed 'snakemake-7.32.4.dist-info/top_level.txt'
removed directory 'snakemake-7.32.4.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.4-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 50 kB/s | 2.2 kB 00:00
fedora 532 kB/s | 16 kB 00:00
Package python3-jinja2-3.1.2-6.fc40.noarch is already installed.
Package librsvg2-tools-2.56.92-1.fc40.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc39.noarch is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.1.2-1.fc40.noarch is already installed.
Package python3-appdirs-1.4.4-11.fc39.noarch is already installed.
Package python3-boto3-1.28.49-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-myst-parser-2.0.0-2.fc39.noarch is already installed.
Package python3-packaging-23.1-5.fc40.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pip-23.2.1-1.fc39.noarch is already installed.
Package python3-pygments-2.16.1-1.fc40.noarch is already installed.
Package python3-pytest-7.4.2-1.fc40.noarch is already installed.
Package python3-pyyaml-6.0.1-11.fc39.x86_64 is already installed.
Package python3-requests-2.28.2-6.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed.
Package python3-setuptools-67.7.2-7.fc40.noarch is already installed.
Package python3-sphinx-1:7.1.2-1.fc40.noarch is already installed.
Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed.
Package python3-sphinx_rtd_theme-1.2.2-1.fc39.noarch is already installed.
Package python3-wheel-1:0.40.0-4.fc39.noarch is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1882-1.fc40.noarch is already installed.
Dependencies resolved.
=============================================================================================
Package Arch Version Repo Size
=============================================================================================
Installing:
python3-GitPython noarch 3.1.32-1.fc40 copr_base 358 k
python3-azure-batch noarch 14.0.0-1.fc39 copr_base 207 k
python3-azure-core noarch 2:1.28.0-3.fc39 fedora 295 k
python3-azure-identity noarch 1:1.10.0-9.fc39 fedora 220 k
python3-azure-mgmt-batch noarch 17.0.0-5.fc39 fedora 214 k
python3-azure-storage-blob noarch 12.14.1-4.fc39 fedora 546 k
python3-connection_pool noarch 0.0.3-9.fc39 copr_base 17 k
python3-datrie x86_64 0.8.2-10.fc39 fedora 158 k
python3-google-api-client noarch 2:2.99.0-1.fc40 copr_base 4.5 M
python3-google-cloud-storage noarch 2.10.0-4.fc39 fedora 189 k
python3-google-crc32c x86_64 1.1.2-9.fc39 fedora 36 k
python3-humanfriendly noarch 10.0-8.fc39 copr_base 132 k
python3-jsonschema noarch 4.19.0-1.fc40 fedora 203 k
python3-nbformat noarch 5.9.2-1.fc40 copr_base 121 k
python3-oauth2client noarch 4.1.3-23.fc39 fedora 184 k
python3-psutil x86_64 5.9.5-2.fc39 copr_base 260 k
python3-pulp noarch 2.7.0-3.fc39 fedora 209 k
python3-reretry noarch 0.11.8-5.fc39 fedora 18 k
python3-slacker noarch 0.14.0-12.fc39 fedora 35 k
python3-smart_open noarch 6.3.0-5.fc39 fedora 117 k
python3-stopit noarch 1.1.2-8.fc39 copr_base 26 k
python3-tabulate noarch 0.9.0-4.fc39 fedora 69 k
python3-throttler noarch 1.2.2-6.fc39 fedora 27 k
python3-toposort noarch 1.10-3.fc39 fedora 20 k
python3-wrapt x86_64 1.14.1-6.fc40 copr_base 64 k
python3-yte noarch 1.5.1-5.fc39 fedora 35 k
Installing dependencies:
abseil-cpp x86_64 20230802.0-1.fc40 fedora 678 k
c-ares x86_64 1.19.1-1.fc39 fedora 111 k
git-core x86_64 2.41.0-2.fc39 fedora 4.4 M
google-crc32c x86_64 1.1.2-7.fc39 fedora 22 k
grpc-data noarch 1.48.4-25.fc40 fedora 24 k
less x86_64 643-1.fc40 fedora 176 k
libcbor x86_64 0.10.2-2.fc39 fedora 58 k
libedit x86_64 3.1-48.20230828cvs.fc40 fedora 107 k
libfido2 x86_64 1.13.0-3.fc39 fedora 98 k
openssh x86_64 9.3p1-10.fc40 fedora 438 k
openssh-clients x86_64 9.3p1-10.fc40 fedora 734 k
protobuf x86_64 3.19.6-6.fc39 copr_base 1.0 M
python3-adal noarch 1.2.7-13.fc39 fedora 105 k
python3-attrs noarch 23.1.0-4.fc40 copr_base 110 k
python3-azure-common noarch 1:1.1.28-6.fc39 fedora 39 k
python3-azure-mgmt-core noarch 1:1.3.2-9.fc39 fedora 47 k
python3-boto noarch 2.49.0-18.fc39 fedora 1.8 M
python3-cachetools noarch 5.3.1-4.fc39 copr_base 38 k
python3-certifi noarch 2023.05.07-2.fc39 fedora 14 k
python3-cffi x86_64 1.15.1-6.fc39 fedora 307 k
python3-cryptography x86_64 41.0.3-2.fc40 copr_base 1.2 M
python3-dpath noarch 2.1.4-3.fc39 copr_base 38 k
python3-fasteners noarch 0.18-9.fc39 fedora 50 k
python3-fastjsonschema noarch 2.18.0-1.fc40 fedora 63 k
python3-gitdb noarch 4.0.10-3.fc39 fedora 142 k
python3-google-api-core noarch 1:2.11.1-5.fc39 fedora 201 k
python3-google-auth noarch 1:2.23.0-1.fc40 copr_base 236 k
python3-google-auth-httplib2 noarch 0.1.1-1.fc40 copr_base 21 k
python3-google-cloud-core noarch 2.3.3-2.fc39 fedora 72 k
python3-google-resumable-media noarch 2.6.0-1.fc40 fedora 98 k
python3-googleapis-common-protos noarch 1.60.0-2.fc39 copr_base 186 k
python3-grpcio x86_64 1.48.4-25.fc40 fedora 2.2 M
python3-grpcio-status noarch 1.48.4-25.fc40 fedora 23 k
python3-httplib2 noarch 0.21.0-4.fc39 fedora 139 k
python3-isodate noarch 0.6.1-9.fc39 fedora 77 k
python3-jsonschema-specifications noarch 2023.7.1-1.fc40 fedora 27 k
python3-jupyter-core noarch 5.1.0-5.fc39 fedora 141 k
python3-jwt noarch 2.6.0-4.fc39 fedora 61 k
python3-jwt+crypto noarch 2.6.0-4.fc39 fedora 8.9 k
python3-msal noarch 1.24.0~b1-9.fc39 copr_base 156 k
python3-msal-extensions noarch 1.0.0-7.fc39 fedora 47 k
python3-msrest noarch 0.7.1-8.20221014git2d8fd04.fc39 fedora 151 k
python3-msrestazure noarch 0.6.4-18.fc39 fedora 78 k
python3-oauthlib noarch 3.2.1-6.fc39 fedora 242 k
python3-plac noarch 1.3.5-12.fc39 fedora 64 k
python3-platformdirs noarch 3.9.1-2.fc39 fedora 45 k
python3-ply noarch 3.11-20.fc39 copr_base 131 k
python3-portalocker noarch 2.7.0-5.fc39 fedora 45 k
python3-protobuf x86_64 3.19.6-6.fc39 copr_base 390 k
python3-pyOpenSSL noarch 23.2.0-1.fc40 copr_base 121 k
python3-pyasn1 noarch 0.4.8-16.fc39 copr_base 170 k
python3-pyasn1-modules noarch 0.4.8-16.fc39 copr_base 267 k
python3-pycparser noarch 2.20-12.fc40 fedora 156 k
python3-pyparsing noarch 3.0.9-11.fc39 fedora 254 k
python3-referencing noarch 0.30.2-1.fc40 fedora 80 k
python3-requests-oauthlib noarch 1.3.1-6.fc39 fedora 57 k
python3-rpds-py x86_64 0.9.2-4.fc40 fedora 281 k
python3-rsa noarch 4.9-3.fc39 copr_base 70 k
python3-smmap noarch 5.0.0-6.fc39 fedora 62 k
python3-traitlets noarch 5.9.0-3.fc39 fedora 312 k
python3-typing-extensions noarch 4.8.0-1.fc40 copr_base 76 k
python3-uritemplate noarch 4.1.1-6.fc39 fedora 40 k
python3-zombie-imp noarch 0.0.2-2.fc39 fedora 29 k
re2 x86_64 1:20220601-3.fc39 fedora 200 k
Transaction Summary
=============================================================================================
Install 90 Packages
Total download size: 27 M
Installed size: 183 M
Downloading Packages:
(1/90): python3-attrs-23.1.0-4.fc40.noarch.rpm 1.9 MB/s | 110 kB 00:00
(2/90): python3-GitPython-3.1.32-1.fc40.noarch. 5.1 MB/s | 358 kB 00:00
(3/90): protobuf-3.19.6-6.fc39.x86_64.rpm 14 MB/s | 1.0 MB 00:00
(4/90): python3-azure-batch-14.0.0-1.fc39.noarc 12 MB/s | 207 kB 00:00
(5/90): python3-cachetools-5.3.1-4.fc39.noarch. 4.1 MB/s | 38 kB 00:00
(6/90): python3-connection_pool-0.0.3-9.fc39.no 1.5 MB/s | 17 kB 00:00
(7/90): python3-cryptography-41.0.3-2.fc40.x86_ 50 MB/s | 1.2 MB 00:00
(8/90): python3-dpath-2.1.4-3.fc39.noarch.rpm 1.9 MB/s | 38 kB 00:00
(9/90): python3-google-api-client-2.99.0-1.fc40 66 MB/s | 4.5 MB 00:00
(10/90): python3-google-auth-2.23.0-1.fc40.noar 4.2 MB/s | 236 kB 00:00
(11/90): python3-google-auth-httplib2-0.1.1-1.f 393 kB/s | 21 kB 00:00
(12/90): python3-googleapis-common-protos-1.60. 15 MB/s | 186 kB 00:00
(13/90): python3-humanfriendly-10.0-8.fc39.noar 8.8 MB/s | 132 kB 00:00
(14/90): python3-msal-1.24.0~b1-9.fc39.noarch.r 10 MB/s | 156 kB 00:00
(15/90): python3-nbformat-5.9.2-1.fc40.noarch.r 11 MB/s | 121 kB 00:00
(16/90): python3-protobuf-3.19.6-6.fc39.x86_64. 28 MB/s | 390 kB 00:00
(17/90): python3-ply-3.11-20.fc39.noarch.rpm 8.5 MB/s | 131 kB 00:00
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(36/90): python3-azure-common-1.1.28-6.fc39.noa 303 kB/s | 39 kB 00:00
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(47/90): python3-certifi-2023.05.07-2.fc39.noar 86 kB/s | 14 kB 00:00
(48/90): python3-fasteners-0.18-9.fc39.noarch.r 600 kB/s | 50 kB 00:00
(49/90): python3-gitdb-4.0.10-3.fc39.noarch.rpm 4.2 MB/s | 142 kB 00:00
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(52/90): python3-fastjsonschema-2.18.0-1.fc40.n 797 kB/s | 63 kB 00:00
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Verifying : python3-toposort-1.10-3.fc39.noarch 85/90
Verifying : python3-traitlets-5.9.0-3.fc39.noarch 86/90
Verifying : python3-uritemplate-4.1.1-6.fc39.noarch 87/90
Verifying : python3-yte-1.5.1-5.fc39.noarch 88/90
Verifying : python3-zombie-imp-0.0.2-2.fc39.noarch 89/90
Verifying : re2-1:20220601-3.fc39.x86_64 90/90
Installed:
abseil-cpp-20230802.0-1.fc40.x86_64
c-ares-1.19.1-1.fc39.x86_64
git-core-2.41.0-2.fc39.x86_64
google-crc32c-1.1.2-7.fc39.x86_64
grpc-data-1.48.4-25.fc40.noarch
less-643-1.fc40.x86_64
libcbor-0.10.2-2.fc39.x86_64
libedit-3.1-48.20230828cvs.fc40.x86_64
libfido2-1.13.0-3.fc39.x86_64
openssh-9.3p1-10.fc40.x86_64
openssh-clients-9.3p1-10.fc40.x86_64
protobuf-3.19.6-6.fc39.x86_64
python3-GitPython-3.1.32-1.fc40.noarch
python3-adal-1.2.7-13.fc39.noarch
python3-attrs-23.1.0-4.fc40.noarch
python3-azure-batch-14.0.0-1.fc39.noarch
python3-azure-common-1:1.1.28-6.fc39.noarch
python3-azure-core-2:1.28.0-3.fc39.noarch
python3-azure-identity-1:1.10.0-9.fc39.noarch
python3-azure-mgmt-batch-17.0.0-5.fc39.noarch
python3-azure-mgmt-core-1:1.3.2-9.fc39.noarch
python3-azure-storage-blob-12.14.1-4.fc39.noarch
python3-boto-2.49.0-18.fc39.noarch
python3-cachetools-5.3.1-4.fc39.noarch
python3-certifi-2023.05.07-2.fc39.noarch
python3-cffi-1.15.1-6.fc39.x86_64
python3-connection_pool-0.0.3-9.fc39.noarch
python3-cryptography-41.0.3-2.fc40.x86_64
python3-datrie-0.8.2-10.fc39.x86_64
python3-dpath-2.1.4-3.fc39.noarch
python3-fasteners-0.18-9.fc39.noarch
python3-fastjsonschema-2.18.0-1.fc40.noarch
python3-gitdb-4.0.10-3.fc39.noarch
python3-google-api-client-2:2.99.0-1.fc40.noarch
python3-google-api-core-1:2.11.1-5.fc39.noarch
python3-google-auth-1:2.23.0-1.fc40.noarch
python3-google-auth-httplib2-0.1.1-1.fc40.noarch
python3-google-cloud-core-2.3.3-2.fc39.noarch
python3-google-cloud-storage-2.10.0-4.fc39.noarch
python3-google-crc32c-1.1.2-9.fc39.x86_64
python3-google-resumable-media-2.6.0-1.fc40.noarch
python3-googleapis-common-protos-1.60.0-2.fc39.noarch
python3-grpcio-1.48.4-25.fc40.x86_64
python3-grpcio-status-1.48.4-25.fc40.noarch
python3-httplib2-0.21.0-4.fc39.noarch
python3-humanfriendly-10.0-8.fc39.noarch
python3-isodate-0.6.1-9.fc39.noarch
python3-jsonschema-4.19.0-1.fc40.noarch
python3-jsonschema-specifications-2023.7.1-1.fc40.noarch
python3-jupyter-core-5.1.0-5.fc39.noarch
python3-jwt-2.6.0-4.fc39.noarch
python3-jwt+crypto-2.6.0-4.fc39.noarch
python3-msal-1.24.0~b1-9.fc39.noarch
python3-msal-extensions-1.0.0-7.fc39.noarch
python3-msrest-0.7.1-8.20221014git2d8fd04.fc39.noarch
python3-msrestazure-0.6.4-18.fc39.noarch
python3-nbformat-5.9.2-1.fc40.noarch
python3-oauth2client-4.1.3-23.fc39.noarch
python3-oauthlib-3.2.1-6.fc39.noarch
python3-plac-1.3.5-12.fc39.noarch
python3-platformdirs-3.9.1-2.fc39.noarch
python3-ply-3.11-20.fc39.noarch
python3-portalocker-2.7.0-5.fc39.noarch
python3-protobuf-3.19.6-6.fc39.x86_64
python3-psutil-5.9.5-2.fc39.x86_64
python3-pulp-2.7.0-3.fc39.noarch
python3-pyOpenSSL-23.2.0-1.fc40.noarch
python3-pyasn1-0.4.8-16.fc39.noarch
python3-pyasn1-modules-0.4.8-16.fc39.noarch
python3-pycparser-2.20-12.fc40.noarch
python3-pyparsing-3.0.9-11.fc39.noarch
python3-referencing-0.30.2-1.fc40.noarch
python3-requests-oauthlib-1.3.1-6.fc39.noarch
python3-reretry-0.11.8-5.fc39.noarch
python3-rpds-py-0.9.2-4.fc40.x86_64
python3-rsa-4.9-3.fc39.noarch
python3-slacker-0.14.0-12.fc39.noarch
python3-smart_open-6.3.0-5.fc39.noarch
python3-smmap-5.0.0-6.fc39.noarch
python3-stopit-1.1.2-8.fc39.noarch
python3-tabulate-0.9.0-4.fc39.noarch
python3-throttler-1.2.2-6.fc39.noarch
python3-toposort-1.10-3.fc39.noarch
python3-traitlets-5.9.0-3.fc39.noarch
python3-typing-extensions-4.8.0-1.fc40.noarch
python3-uritemplate-4.1.1-6.fc39.noarch
python3-wrapt-1.14.1-6.fc40.x86_64
python3-yte-1.5.1-5.fc39.noarch
python3-zombie-imp-0.0.2-2.fc39.noarch
re2-1:20220601-3.fc39.x86_64
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1694995200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TBcg2u
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.4
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.4
+ rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./.github/workflows/scripts')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
recursedown('./docs/tutorial')
recursedown('./docs/tutorial/workflow')
recursedown('./examples')
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recursedown('./examples/idea')
recursedown('./examples/latex')
recursedown('./examples/mirna')
recursedown('./images')
recursedown('./misc')
recursedown('./misc/nano')
recursedown('./misc/nano/syntax')
recursedown('./misc/vim')
recursedown('./misc/vim/ftdetect')
recursedown('./misc/vim/ftplugin')
recursedown('./misc/vim/ftplugin/snakemake')
recursedown('./misc/vim/syntax')
recursedown('./playground')
recursedown('./playground/iteration')
recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
recursedown('./snakemake/linting')
recursedown('./snakemake/remote')
recursedown('./snakemake/report')
recursedown('./snakemake/report/data')
recursedown('./snakemake/report/template')
recursedown('./snakemake/report/template/components')
recursedown('./snakemake/template_rendering')
recursedown('./snakemake/unit_tests')
recursedown('./snakemake/unit_tests/templates')
recursedown('./tests')
recursedown('./tests/knapsack')
recursedown('./tests/linting')
recursedown('./tests/linting/absolute_paths')
recursedown('./tests/linting/dynamic')
recursedown('./tests/linting/envvars')
recursedown('./tests/linting/iofile_by_index')
recursedown('./tests/linting/log_directive')
recursedown('./tests/linting/long_run')
recursedown('./tests/linting/missing_software_definition')
recursedown('./tests/linting/mixed_func_and_rules')
recursedown('./tests/linting/not_used_params')
recursedown('./tests/linting/params_prefix')
recursedown('./tests/linting/path_add')
recursedown('./tests/linting/singularity')
recursedown('./tests/linting/tab_usage')
recursedown('./tests/linting/version')
recursedown('./tests/profile')
recursedown('./tests/resources')
recursedown('./tests/resources/slurmcluster')
recursedown("./tests/test (with parenthese's)")
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recursedown('./tests/test02')
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recursedown('./tests/test15')
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recursedown('./tests/testHighWorkload')
recursedown('./tests/testHighWorkload/mfa')
recursedown('./tests/test_all_temp')
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recursedown('./tests/test_ancient')
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recursedown('./tests/test_ancient_dag')
recursedown('./tests/test_ancient_dag/expected-results')
recursedown('./tests/test_archive')
recursedown('./tests/test_archive/expected-results')
recursedown('./tests/test_azure_batch')
recursedown('./tests/test_azure_batch/expected-results')
recursedown('./tests/test_bash')
recursedown('./tests/test_bash/expected-results')
recursedown('./tests/test_batch')
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recursedown('./tests/test_batch_final')
recursedown('./tests/test_batch_final/expected-results')
recursedown('./tests/test_benchmark')
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recursedown('./tests/test_cache_multioutput')
recursedown('./tests/test_cache_multioutput/expected-results')
recursedown('./tests/test_checkpoint_allowed_rules')
recursedown('./tests/test_checkpoint_allowed_rules/expected-results')
recursedown('./tests/test_checkpoints')
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recursedown('./tests/test_checkpoints/expected-results/aggregated')
recursedown('./tests/test_checkpoints/samples')
recursedown('./tests/test_checkpoints_dir')
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recursedown('./tests/test_cloud_checkpoints_issue574')
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recursedown('./tests/test_conda_cmd_exe')
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recursedown('./tests/test_conda_pin_file')
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recursedown('./tests/test_conda_python_3_7_script')
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recursedown('./tests/test_convert_to_cwl')
recursedown('./tests/test_converting_path_for_r_script')
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recursedown('./tests/test_github_issue1618/expected-results')
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'misc/vim/README.md' -> 'README-vim.md'
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recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.1.2)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
(installed: setuptools 67.7.2)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
running egg_info
creating snakemake.egg-info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
writing manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.40.0)
running dist_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling connection-pool (>=0.0.3) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: connection-pool (>=0.0.3)
(installed: connection-pool 0.0.3)
Handling datrie from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: datrie
(installed: datrie 0.8.2)
Handling docutils from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling gitpython from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: gitpython
(installed: gitpython 3.1.32)
Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: humanfriendly
(installed: humanfriendly 10.0)
Handling jinja2 (<4.0,>=3.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jinja2 (<4.0,>=3.0)
(installed: jinja2 3.1.2)
Handling jsonschema from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jsonschema
(installed: jsonschema 4.19.0)
Handling nbformat from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: nbformat
(installed: nbformat 5.9.2)
Handling packaging from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: packaging
(installed: packaging 23.1)
Handling psutil from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: psutil
(installed: psutil 5.9.5)
Handling pulp (>=2.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pulp (>=2.0)
(installed: pulp 2.7.0)
Handling pyyaml from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pyyaml
(installed: pyyaml 6.0.1)
Handling requests from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: requests
(installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: reretry
(installed: reretry 0.11.8)
Handling smart-open (>=3.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: smart-open (>=3.0)
(installed: smart-open 6.3.0)
Handling stopit from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: stopit
(installed: stopit 1.1.2)
Handling tabulate from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: tabulate
(installed: tabulate 0.9.0)
Handling throttler from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: throttler
(installed: throttler 1.2.2)
Handling toposort (>=1.10) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: toposort (>=1.10)
(installed: toposort 1.10)
Handling wrapt from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: wrapt
(installed: wrapt 1.14.1)
Handling yte (<2.0,>=1.5.1) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: yte (<2.0,>=1.5.1)
(installed: yte 1.5.1)
Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-storage-blob ; extra == 'azure'
(installed: azure-storage-blob 12.14.1)
Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-batch ; extra == 'azure'
(installed: azure-batch 14.0.0)
Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-core ; extra == 'azure'
(installed: azure-core 1.28.0)
Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-identity ; extra == 'azure'
(installed: azure-identity 1.10.0)
Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-mgmt-batch ; extra == 'azure'
(installed: azure-mgmt-batch 17.0.0)
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-api-python-client ; extra == 'google-cloud'
(installed: google-api-python-client 2.99.0)
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-cloud-storage ; extra == 'google-cloud'
(installed: google-cloud-storage 2.10.0)
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-crc32c ; extra == 'google-cloud'
(installed: google-crc32c 1.1.2)
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: oauth2client ; extra == 'google-cloud'
(installed: oauth2client 4.1.3)
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: slacker ; extra == 'messaging'
(installed: slacker 0.14.0)
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pygments ; extra == 'reports'
(installed: pygments 2.16.1)
+ cat /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv snakemake-7.32.4.dist-info/
removed 'snakemake-7.32.4.dist-info/AUTHORS.rst'
removed 'snakemake-7.32.4.dist-info/LICENSE.md'
removed 'snakemake-7.32.4.dist-info/METADATA'
removed 'snakemake-7.32.4.dist-info/entry_points.txt'
removed 'snakemake-7.32.4.dist-info/top_level.txt'
removed directory 'snakemake-7.32.4.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.4-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 65 kB/s | 2.2 kB 00:00
fedora 434 kB/s | 16 kB 00:00
Package python3-jinja2-3.1.2-6.fc40.noarch is already installed.
Package python3-yte-1.5.1-5.fc39.noarch is already installed.
Package librsvg2-tools-2.56.92-1.fc40.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc39.noarch is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc2-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.1.2-1.fc40.noarch is already installed.
Package python3-appdirs-1.4.4-11.fc39.noarch is already installed.
Package python3-azure-batch-14.0.0-1.fc39.noarch is already installed.
Package python3-azure-core-2:1.28.0-3.fc39.noarch is already installed.
Package python3-azure-identity-1:1.10.0-9.fc39.noarch is already installed.
Package python3-azure-mgmt-batch-17.0.0-5.fc39.noarch is already installed.
Package python3-azure-storage-blob-12.14.1-4.fc39.noarch is already installed.
Package python3-boto3-1.28.49-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-configargparse-1.7-1.fc40.noarch is already installed.
Package python3-connection_pool-0.0.3-9.fc39.noarch is already installed.
Package python3-datrie-0.8.2-10.fc39.x86_64 is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-GitPython-3.1.32-1.fc40.noarch is already installed.
Package python3-google-api-client-2:2.99.0-1.fc40.noarch is already installed.
Package python3-google-cloud-storage-2.10.0-4.fc39.noarch is already installed.
Package python3-google-crc32c-1.1.2-9.fc39.x86_64 is already installed.
Package python3-humanfriendly-10.0-8.fc39.noarch is already installed.
Package python3-jsonschema-4.19.0-1.fc40.noarch is already installed.
Package python3-myst-parser-2.0.0-2.fc39.noarch is already installed.
Package python3-nbformat-5.9.2-1.fc40.noarch is already installed.
Package python3-oauth2client-4.1.3-23.fc39.noarch is already installed.
Package python3-packaging-23.1-5.fc40.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pip-23.2.1-1.fc39.noarch is already installed.
Package python3-psutil-5.9.5-2.fc39.x86_64 is already installed.
Package python3-pulp-2.7.0-3.fc39.noarch is already installed.
Package python3-pygments-2.16.1-1.fc40.noarch is already installed.
Package python3-pytest-7.4.2-1.fc40.noarch is already installed.
Package python3-pyyaml-6.0.1-11.fc39.x86_64 is already installed.
Package python3-requests-2.28.2-6.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc39.noarch is already installed.
Package python3-reretry-0.11.8-5.fc39.noarch is already installed.
Package python3-setuptools-67.7.2-7.fc40.noarch is already installed.
Package python3-slacker-0.14.0-12.fc39.noarch is already installed.
Package python3-smart_open-6.3.0-5.fc39.noarch is already installed.
Package python3-sphinx-1:7.1.2-1.fc40.noarch is already installed.
Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed.
Package python3-sphinx_rtd_theme-1.2.2-1.fc39.noarch is already installed.
Package python3-stopit-1.1.2-8.fc39.noarch is already installed.
Package python3-tabulate-0.9.0-4.fc39.noarch is already installed.
Package python3-throttler-1.2.2-6.fc39.noarch is already installed.
Package python3-toposort-1.10-3.fc39.noarch is already installed.
Package python3-wheel-1:0.40.0-4.fc39.noarch is already installed.
Package python3-wrapt-1.14.1-6.fc40.x86_64 is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1882-1.fc40.noarch is already installed.
Dependencies resolved.
Nothing to do.
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1694995200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Aju37G
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.1.2)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
(installed: setuptools 67.7.2)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
running egg_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.40.0)
running dist_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: configargparse
(installed: configargparse 1.7)
Handling connection-pool (>=0.0.3) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: connection-pool (>=0.0.3)
(installed: connection-pool 0.0.3)
Handling datrie from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: datrie
(installed: datrie 0.8.2)
Handling docutils from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling gitpython from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: gitpython
(installed: gitpython 3.1.32)
Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: humanfriendly
(installed: humanfriendly 10.0)
Handling jinja2 (<4.0,>=3.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jinja2 (<4.0,>=3.0)
(installed: jinja2 3.1.2)
Handling jsonschema from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jsonschema
(installed: jsonschema 4.19.0)
Handling nbformat from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: nbformat
(installed: nbformat 5.9.2)
Handling packaging from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: packaging
(installed: packaging 23.1)
Handling psutil from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: psutil
(installed: psutil 5.9.5)
Handling pulp (>=2.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pulp (>=2.0)
(installed: pulp 2.7.0)
Handling pyyaml from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pyyaml
(installed: pyyaml 6.0.1)
Handling requests from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: requests
(installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: reretry
(installed: reretry 0.11.8)
Handling smart-open (>=3.0) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: smart-open (>=3.0)
(installed: smart-open 6.3.0)
Handling stopit from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: stopit
(installed: stopit 1.1.2)
Handling tabulate from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: tabulate
(installed: tabulate 0.9.0)
Handling throttler from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: throttler
(installed: throttler 1.2.2)
Handling toposort (>=1.10) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: toposort (>=1.10)
(installed: toposort 1.10)
Handling wrapt from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: wrapt
(installed: wrapt 1.14.1)
Handling yte (<2.0,>=1.5.1) from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: yte (<2.0,>=1.5.1)
(installed: yte 1.5.1)
Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-storage-blob ; extra == 'azure'
(installed: azure-storage-blob 12.14.1)
Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-batch ; extra == 'azure'
(installed: azure-batch 14.0.0)
Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-core ; extra == 'azure'
(installed: azure-core 1.28.0)
Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-identity ; extra == 'azure'
(installed: azure-identity 1.10.0)
Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-mgmt-batch ; extra == 'azure'
(installed: azure-mgmt-batch 17.0.0)
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-api-python-client ; extra == 'google-cloud'
(installed: google-api-python-client 2.99.0)
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-cloud-storage ; extra == 'google-cloud'
(installed: google-cloud-storage 2.10.0)
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-crc32c ; extra == 'google-cloud'
(installed: google-crc32c 1.1.2)
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: oauth2client ; extra == 'google-cloud'
(installed: oauth2client 4.1.3)
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: slacker ; extra == 'messaging'
(installed: slacker 0.14.0)
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pygments ; extra == 'reports'
(installed: pygments 2.16.1)
+ cat /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv snakemake-7.32.4.dist-info/
removed 'snakemake-7.32.4.dist-info/AUTHORS.rst'
removed 'snakemake-7.32.4.dist-info/LICENSE.md'
removed 'snakemake-7.32.4.dist-info/METADATA'
removed 'snakemake-7.32.4.dist-info/top_level.txt'
removed 'snakemake-7.32.4.dist-info/entry_points.txt'
removed directory 'snakemake-7.32.4.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.MVxswP
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.32.4
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir
Processing /builddir/build/BUILD/snakemake-7.32.4
Preparing metadata (pyproject.toml): started
Running command Preparing metadata (pyproject.toml)
running dist_info
creating /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info
writing /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info/PKG-INFO
writing dependency_links to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info/dependency_links.txt
writing entry points to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info/entry_points.txt
writing requirements to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info/requires.txt
writing top-level names to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info/top_level.txt
writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info/SOURCES.txt'
reading manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-vg1hja0l/snakemake-7.32.4.dist-info'
Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: snakemake
Building wheel for snakemake (pyproject.toml): started
Running command Building wheel for snakemake (pyproject.toml)
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/snakemake
copying snakemake/wrapper.py -> build/lib/snakemake
copying snakemake/workflow.py -> build/lib/snakemake
copying snakemake/utils.py -> build/lib/snakemake
copying snakemake/target_jobs.py -> build/lib/snakemake
copying snakemake/stats.py -> build/lib/snakemake
copying snakemake/sourcecache.py -> build/lib/snakemake
copying snakemake/shell.py -> build/lib/snakemake
copying snakemake/script.py -> build/lib/snakemake
copying snakemake/scheduler.py -> build/lib/snakemake
copying snakemake/rules.py -> build/lib/snakemake
copying snakemake/ruleinfo.py -> build/lib/snakemake
copying snakemake/resources.py -> build/lib/snakemake
copying snakemake/profiles.py -> build/lib/snakemake
copying snakemake/persistence.py -> build/lib/snakemake
copying snakemake/path_modifier.py -> build/lib/snakemake
copying snakemake/parser.py -> build/lib/snakemake
copying snakemake/output_index.py -> build/lib/snakemake
copying snakemake/notebook.py -> build/lib/snakemake
copying snakemake/modules.py -> build/lib/snakemake
copying snakemake/logging.py -> build/lib/snakemake
copying snakemake/jobs.py -> build/lib/snakemake
copying snakemake/io.py -> build/lib/snakemake
copying snakemake/interfaces.py -> build/lib/snakemake
copying snakemake/gui.py -> build/lib/snakemake
copying snakemake/exceptions.py -> build/lib/snakemake
copying snakemake/decorators.py -> build/lib/snakemake
copying snakemake/dag.py -> build/lib/snakemake
copying snakemake/cwl.py -> build/lib/snakemake
copying snakemake/checkpoints.py -> build/lib/snakemake
copying snakemake/benchmark.py -> build/lib/snakemake
copying snakemake/_version.py -> build/lib/snakemake
copying snakemake/__main__.py -> build/lib/snakemake
copying snakemake/__init__.py -> build/lib/snakemake
creating build/lib/snakemake/unit_tests
copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests
creating build/lib/snakemake/template_rendering
copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering
copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering
copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering
creating build/lib/snakemake/report
copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report
copying snakemake/report/__init__.py -> build/lib/snakemake/report
creating build/lib/snakemake/remote
copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote
copying snakemake/remote/webdav.py -> build/lib/snakemake/remote
copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote
copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote
copying snakemake/remote/gfal.py -> build/lib/snakemake/remote
copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote
copying snakemake/remote/__init__.py -> build/lib/snakemake/remote
copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote
copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote
copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote
copying snakemake/remote/S3.py -> build/lib/snakemake/remote
copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote
copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote
copying snakemake/remote/GS.py -> build/lib/snakemake/remote
copying snakemake/remote/FTP.py -> build/lib/snakemake/remote
copying snakemake/remote/EGA.py -> build/lib/snakemake/remote
copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote
creating build/lib/snakemake/linting
copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting
copying snakemake/linting/rules.py -> build/lib/snakemake/linting
copying snakemake/linting/links.py -> build/lib/snakemake/linting
copying snakemake/linting/__init__.py -> build/lib/snakemake/linting
creating build/lib/snakemake/executors
copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors
copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors
copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors
copying snakemake/executors/flux.py -> build/lib/snakemake/executors
copying snakemake/executors/common.py -> build/lib/snakemake/executors
copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors
copying snakemake/executors/__init__.py -> build/lib/snakemake/executors
creating build/lib/snakemake/deployment
copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment
copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment
copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment
copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment
copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment
creating build/lib/snakemake/common
copying snakemake/common/tbdstring.py -> build/lib/snakemake/common
copying snakemake/common/__init__.py -> build/lib/snakemake/common
creating build/lib/snakemake/caching
copying snakemake/caching/remote.py -> build/lib/snakemake/caching
copying snakemake/caching/local.py -> build/lib/snakemake/caching
copying snakemake/caching/hash.py -> build/lib/snakemake/caching
copying snakemake/caching/__init__.py -> build/lib/snakemake/caching
creating build/lib/snakemake/unit_tests/templates
copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates
creating build/lib/snakemake/report/template
copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template
creating build/lib/snakemake/report/data
copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data
copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data
copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data
copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data
copying snakemake/report/data/results.py -> build/lib/snakemake/report/data
copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data
copying snakemake/report/data/common.py -> build/lib/snakemake/report/data
copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data
copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data
creating build/lib/snakemake/report/template/components
copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components
creating build/lib/snakemake/executors/slurm
copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm
copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm
copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm
copying snakemake/report.css -> build/lib/snakemake
copying snakemake/gui.html -> build/lib/snakemake
copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors
copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates
copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates
copying snakemake/report/template/style.css -> build/lib/snakemake/report/template
copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template
copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template
copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components
UPDATING build/lib/snakemake/_version.py
set build/lib/snakemake/_version.py to '7.32.4'
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake
creating build/bdist.linux-x86_64/wheel/snakemake/caching
copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
creating build/bdist.linux-x86_64/wheel/snakemake/common
copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common
copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/snakemake/common
creating build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
creating build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors
creating build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/common.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
creating build/bdist.linux-x86_64/wheel/snakemake/linting
copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
creating build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
creating build/bdist.linux-x86_64/wheel/snakemake/report
creating build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
creating build/bdist.linux-x86_64/wheel/snakemake/report/template
copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-x86_64/wheel/snakemake/report/template
copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report/template
copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-x86_64/wheel/snakemake/report/template
creating build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template
copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report
copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/snakemake/report
creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering
copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests
creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests
copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/interfaces.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/script.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/stats.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake
running install_egg_info
running egg_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-7.32.4-py3.12.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/snakemake-7.32.4.dist-info/WHEEL
creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-wheel-94ufaj5z/.tmp-bllvv3pe/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'snakemake/__init__.py'
adding 'snakemake/__main__.py'
adding 'snakemake/_version.py'
adding 'snakemake/benchmark.py'
adding 'snakemake/checkpoints.py'
adding 'snakemake/cwl.py'
adding 'snakemake/dag.py'
adding 'snakemake/decorators.py'
adding 'snakemake/exceptions.py'
adding 'snakemake/gui.html'
adding 'snakemake/gui.py'
adding 'snakemake/interfaces.py'
adding 'snakemake/io.py'
adding 'snakemake/jobs.py'
adding 'snakemake/logging.py'
adding 'snakemake/modules.py'
adding 'snakemake/notebook.py'
adding 'snakemake/output_index.py'
adding 'snakemake/parser.py'
adding 'snakemake/path_modifier.py'
adding 'snakemake/persistence.py'
adding 'snakemake/profiles.py'
adding 'snakemake/report.css'
adding 'snakemake/resources.py'
adding 'snakemake/ruleinfo.py'
adding 'snakemake/rules.py'
adding 'snakemake/scheduler.py'
adding 'snakemake/script.py'
adding 'snakemake/shell.py'
adding 'snakemake/sourcecache.py'
adding 'snakemake/stats.py'
adding 'snakemake/target_jobs.py'
adding 'snakemake/utils.py'
adding 'snakemake/workflow.py'
adding 'snakemake/wrapper.py'
adding 'snakemake/caching/__init__.py'
adding 'snakemake/caching/hash.py'
adding 'snakemake/caching/local.py'
adding 'snakemake/caching/remote.py'
adding 'snakemake/common/__init__.py'
adding 'snakemake/common/tbdstring.py'
adding 'snakemake/deployment/__init__.py'
adding 'snakemake/deployment/conda.py'
adding 'snakemake/deployment/containerize.py'
adding 'snakemake/deployment/env_modules.py'
adding 'snakemake/deployment/singularity.py'
adding 'snakemake/executors/__init__.py'
adding 'snakemake/executors/azure_batch.py'
adding 'snakemake/executors/common.py'
adding 'snakemake/executors/flux.py'
adding 'snakemake/executors/ga4gh_tes.py'
adding 'snakemake/executors/google_lifesciences.py'
adding 'snakemake/executors/google_lifesciences_helper.py'
adding 'snakemake/executors/jobscript.sh'
adding 'snakemake/executors/slurm/__init__.py'
adding 'snakemake/executors/slurm/slurm_jobstep.py'
adding 'snakemake/executors/slurm/slurm_submit.py'
adding 'snakemake/linting/__init__.py'
adding 'snakemake/linting/links.py'
adding 'snakemake/linting/rules.py'
adding 'snakemake/linting/snakefiles.py'
adding 'snakemake/remote/AzBlob.py'
adding 'snakemake/remote/EGA.py'
adding 'snakemake/remote/FTP.py'
adding 'snakemake/remote/GS.py'
adding 'snakemake/remote/HTTP.py'
adding 'snakemake/remote/NCBI.py'
adding 'snakemake/remote/S3.py'
adding 'snakemake/remote/S3Mocked.py'
adding 'snakemake/remote/SFTP.py'
adding 'snakemake/remote/XRootD.py'
adding 'snakemake/remote/__init__.py'
adding 'snakemake/remote/dropbox.py'
adding 'snakemake/remote/gfal.py'
adding 'snakemake/remote/gridftp.py'
adding 'snakemake/remote/iRODS.py'
adding 'snakemake/remote/webdav.py'
adding 'snakemake/remote/zenodo.py'
adding 'snakemake/report/__init__.py'
adding 'snakemake/report/rulegraph_spec.py'
adding 'snakemake/report/data/__init__.py'
adding 'snakemake/report/data/categories.py'
adding 'snakemake/report/data/common.py'
adding 'snakemake/report/data/packages.py'
adding 'snakemake/report/data/results.py'
adding 'snakemake/report/data/rulegraph.py'
adding 'snakemake/report/data/rules.py'
adding 'snakemake/report/data/runtimes.py'
adding 'snakemake/report/data/timeline.py'
adding 'snakemake/report/template/__init__.py'
adding 'snakemake/report/template/index.html.jinja2'
adding 'snakemake/report/template/logo.svg'
adding 'snakemake/report/template/style.css'
adding 'snakemake/report/template/components/__init__.py'
adding 'snakemake/report/template/components/abstract_menu.js'
adding 'snakemake/report/template/components/abstract_results.js'
adding 'snakemake/report/template/components/app.js'
adding 'snakemake/report/template/components/breadcrumbs.js'
adding 'snakemake/report/template/components/button.js'
adding 'snakemake/report/template/components/category.js'
adding 'snakemake/report/template/components/common.js'
adding 'snakemake/report/template/components/content.js'
adding 'snakemake/report/template/components/icon.js'
adding 'snakemake/report/template/components/list_heading.js'
adding 'snakemake/report/template/components/list_item.js'
adding 'snakemake/report/template/components/menu.js'
adding 'snakemake/report/template/components/navbar.js'
adding 'snakemake/report/template/components/report_info.js'
adding 'snakemake/report/template/components/result_info.js'
adding 'snakemake/report/template/components/result_view_button.js'
adding 'snakemake/report/template/components/rule_graph.js'
adding 'snakemake/report/template/components/rule_info.js'
adding 'snakemake/report/template/components/search_results.js'
adding 'snakemake/report/template/components/stats.js'
adding 'snakemake/report/template/components/subcategory.js'
adding 'snakemake/template_rendering/__init__.py'
adding 'snakemake/template_rendering/jinja2.py'
adding 'snakemake/template_rendering/yte.py'
adding 'snakemake/unit_tests/__init__.py'
adding 'snakemake/unit_tests/templates/__init__.py'
adding 'snakemake/unit_tests/templates/common.py.jinja2'
adding 'snakemake/unit_tests/templates/ruletest.py.jinja2'
adding 'snakemake-7.32.4.dist-info/AUTHORS.rst'
adding 'snakemake-7.32.4.dist-info/LICENSE.md'
adding 'snakemake-7.32.4.dist-info/METADATA'
adding 'snakemake-7.32.4.dist-info/WHEEL'
adding 'snakemake-7.32.4.dist-info/entry_points.txt'
adding 'snakemake-7.32.4.dist-info/top_level.txt'
adding 'snakemake-7.32.4.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Building wheel for snakemake (pyproject.toml): finished with status 'done'
Created wheel for snakemake: filename=snakemake-7.32.4-py3-none-any.whl size=382331 sha256=3f4a6827ae5787f4abc021e1a4b72f7777204c0b7e689d46b50b9540ad728f74
Stored in directory: /builddir/.cache/pip/wheels/53/8b/cb/3dce719624720fd97280e70d5666cec6215f6d7c6704f015ae
Successfully built snakemake
+ find docs -type f -name '*.svg'
+ read -r fn
++ dirname docs/executor_tutorial/workflow/quals.svg
++ basename docs/executor_tutorial/workflow/quals.svg .svg
+ rsvg-convert --format=pdf --output=docs/executor_tutorial/workflow/quals.pdf docs/executor_tutorial/workflow/quals.svg
+ read -r fn
+ find docs/executor_tutorial -type f -exec gawk '/\.svg/ { print FILENAME; nextfile }' '{}' +
+ xargs -r -t sed -r -i 's/(image::.*)\.svg/\1\.pdf/'
sed -r -i 's/(image::.*)\.svg/\1\.pdf/' docs/executor_tutorial/google_lifesciences.rst docs/executor_tutorial/azure_batch.rst
+ PYTHONPATH=/builddir/build/BUILD/snakemake-7.32.4
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C docs latexpdf 'SPHINXOPTS=-j${RPM_BUILD_NCPUS}'
make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs'
sphinx-build -b latex -d _build/doctrees -j2 . _build/latex
Running Sphinx v7.1.2
making output directory... done
myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True)
building [mo]: targets for 0 po files that are out of date
writing output...
building [latex]: all documents
updating environment: [new config] 38 added, 0 changed, 0 removed
reading sources... [100%] snakefiles/remote_files .. tutorial/tutorial
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
copying TeX support files... copying TeX support files...
done
processing Snakemake.tex... index getting_started/installation tutorial/tutorial tutorial/setup tutorial/basics tutorial/advanced tutorial/additional_features tutorial/short executor_tutorial/tutorial executor_tutorial/azure_batch executor_tutorial/azure_aks executor_tutorial/google_lifesciences executor_tutorial/flux snakefiles/best_practices executing/cli executing/cluster executing/cloud executing/grouping executing/caching executing/interoperability executing/monitoring snakefiles/writing_snakefiles snakefiles/rules snakefiles/configuration snakefiles/modularization snakefiles/remote_files snakefiles/utils snakefiles/deployment snakefiles/reporting snakefiles/testing snakefiles/foreign_wms project_info/citations project_info/more_resources project_info/faq project_info/contributing project_info/authors project_info/history project_info/license
resolving references...
done
writing... done
copying images... [100%] project_info/img/idea.png
build succeeded, 497 warnings.
The LaTeX files are in _build/latex.
Run 'make' in that directory to run these through (pdf)latex
(use `make latexpdf' here to do that automatically).
Running LaTeX files through pdflatex...
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst:174: CRITICAL: Title level inconsistent:
Use templating in profiles
~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst:111: WARNING: duplicate label profiles, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:72: WARNING: duplicate label kubernetes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:233: WARNING: duplicate label machine types, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:406: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:490: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:13: WARNING: Title overline too short.
--------------
Executing on SLURM clusters
--------------
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:5: WARNING: duplicate label cluster, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executing/monitoring.rst:5: WARNING: duplicate label monitoring, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/monitoring.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst:184: ERROR: Unexpected indentation.
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short.
Create an Azure Storage Account and upload example data
:::::::::::::::::::::::::::::::::::::::::::::::
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short.
Create an Azure Storage Account and upload example data
:::::::::::::::::::::::::::::::::::::::::::::::
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short.
Azure Blob Storage Warning:
:::::::::::::::::::
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short.
Azure Blob Storage Warning:
:::::::::::::::::::
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short.
Defining a Start Task
:::::
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short.
Defining a Start Task
:::::
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short.
Autoscaling and Task Distribution
:::::
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short.
Autoscaling and Task Distribution
:::::
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:28: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:163: WARNING: duplicate label running the workflow, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/flux.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/google_lifesciences.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/flux.rst
/builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short.
How can I avoid system /tmp to be used when combining singularity and conda?
------------------------------------------------------
/builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short.
How can I avoid system /tmp to be used when combining singularity and conda?
------------------------------------------------------
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:25: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:32: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:53: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:70: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:75: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:82: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:92: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:102: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:112: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:119: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:140: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:150: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:157: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:164: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:172: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:179: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:184: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:191: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:198: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:211: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:218: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:225: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:241: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:249: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:255: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:261: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:280: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:287: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:299: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:313: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:320: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:327: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:333: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:338: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:350: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:358: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:364: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/usr/bin/make -C _build/latex all-pdf
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:474: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:501: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:509: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:522: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:570: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:620: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:710: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:726: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:742: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:751: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md
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Chapter 1.
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Chapter 2.
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Chapter 3.
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Chapter 4.
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_IMAGE_PUBLISHER|
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\TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the ba
tch nodes by including the flag
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[]\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi
s creates an [][]auto-scaling Kubernetes cluster[][]
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[]\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA
RD2=VALUE,…
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[]\TU/FreeSerif(0)/m/n/10 Additional tibanna config e.g. –tibanna-config spot_i
nstance=true sub-
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[]\TU/FreeSans(0)/m/n/10 Snakemake re-
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[]\TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the
batch nodes by including the flag
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\TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your
files. In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/
m/n/10 or
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[]\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10
NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM
ono(0)/m/n/10 NCBI.
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he \TU/FreeMono(0)/m/n/10 Re-
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an alternative path to the
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Chapter 1.
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Chapter 2.
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Chapter 3.
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Chapter 4.
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[]|\TU/FreeSerif(0)/m/n/10 Snakemake gets the status of panoptes.
Underfull \hbox (badness 6859) in paragraph at lines 7213--7216
\TU/FreeSerif(0)/m/n/10 Snakemake continues to run if the status
Underfull \hbox (badness 10000) in paragraph at lines 7230--7232
[]|\TU/FreeMono(0)/m/n/10 /
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\TU/FreeMono(0)/m/n/10 update_workflow_status|
[110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121]
[122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133]
[134] [135] [136]
Underfull \hbox (badness 5652) in paragraph at lines 8976--8980
\TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your
files. In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/
m/n/10 or
[137] [138] [139] [140] [141] [142] [143] [144]
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[]\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10
NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM
ono(0)/m/n/10 NCBI.
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[173] [174]
Underfull \hbox (badness 5133) in paragraph at lines 11479--11486
[]\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T
U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . T
he \TU/FreeMono(0)/m/n/10 Re-
Underfull \hbox (badness 10000) in paragraph at lines 11479--11486
\TU/FreeMono(0)/m/n/10 moteProvider() \TU/FreeSerif(0)/m/n/10 class accepts the
parameter \TU/FreeMono(0)/m/n/10 irods_env_file \TU/FreeSerif(0)/m/n/10 where
an alternative path to the
[175] [176] [177]
Underfull \hbox (badness 10000) in paragraph at lines 11628--11634
\TU/FreeSerif(0)/m/n/10 If you need to access a deposition with restricted acce
ss, you have to additionally provide a \TU/FreeMono(0)/m/n/10 re-
[178] [179]
Underfull \hbox (badness 5878) in paragraph at lines 11786--11792
[]\TU/FreeSerif(0)/m/n/10 First, we load a local configuration file. Next, we d
efine the module \TU/FreeMono(0)/m/n/10 dna_seq \TU/FreeSerif(0)/m/n/10 to be l
oaded from
[180]
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Underfull \hbox (badness 10000) in paragraph at lines 14076--14079
[]\TU/FreeSerif(0)/m/n/10 Provide hyperlink targets, at least for the first two
section levels. For this, use the format
[213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224]
[225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236]
[237] [238] [239]
Missing character: There is no âš (U+26A0) in font [FreeSansBold.otf]/OT:script=
latn;language=dflt;!
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[]\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i
n order to avoid race conditions in
[245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256]
[257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268]
Underfull \hbox (badness 10000) in paragraph at lines 19438--19441
[]\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\
TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/
[269] [270] [271] [272] [273] [274] [275] [276] [277] [278]
Underfull \hbox (badness 10000) in paragraph at lines 20504--20510
[]\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/
FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1
0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use
[279] [280] [281] (./Snakemake.ind)
Package sphinx Warning: The package pict2e is required for rounded boxes.
(sphinx) As it does not seem to be available on your system,
(sphinx) options setting radii have all been ignored.
Package sphinx Warning: The package ellipse is required for elliptical corners.
(sphinx) As it does not seem to be available on your system,
(sphinx) all non-straight corners have used circle arcs..
[282] (./Snakemake.aux) )
(see the transcript file for additional information)
Output written on Snakemake.pdf (286 pages).
Transcript written on Snakemake.log.
Latexmk: Getting log file 'Snakemake.log'
Latexmk: Examining 'Snakemake.fls'
Latexmk: Examining 'Snakemake.log'
Latexmk: Index file 'Snakemake.idx' was written
Latexmk: Log file says output to 'Snakemake.pdf'
Latexmk: Summary of warnings from last run of *latex:
=====Latex reported missing or unavailable character(s).
=====See log file for details.
Latexmk: All targets () are up-to-date
make[1]: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex'
make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs'
pdflatex finished; the PDF files are in _build/latex.
make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs'
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.InPaYk
Latexmk: Missing input file 'Snakemake.toc' (or dependence on it) from following:
No file Snakemake.toc.
Latexmk: Missing input file 'Snakemake.ind' (or dependence on it) from following:
No file Snakemake.ind.
Latexmk: ====List of undefined refs and citations:
Missing character: There is no âš (U+26A0) in font [FreeSansBold.otf]/OT:script=latn;language=dflt;!
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.32.4
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
++ ls /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl
+ specifier=snakemake==7.32.4
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir snakemake==7.32.4
Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12)
Looking in links: /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir
Processing ./pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl
Installing collected packages: snakemake
Creating /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin
changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin/snakemake to 755
changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin/snakemake-bash-completion to 755
Successfully installed snakemake-7.32.4
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin ']'
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin/snakemake-bash-completion
/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin/snakemake: updating
/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin/snakemake-bash-completion: updating
+ rm -rfv /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin/__pycache__
+ rm -f /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages ']'
+ site_dirs+=("/usr/lib/python3.12/site-packages")
+ '[' /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib64/python3.12/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64 --record /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD --output /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD
removed '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_PERCENTAGES_COUNT=2
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-7.32.4-1.fc40.x86_64-pyproject-record --prefix /usr snakemake
+ install -d /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/man/man1
+ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin
+ PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages
+ help2man --no-info '--name=Metapackage for snakemake: azure extras' snakemake
+ install -d /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/bash-completion/completions
+ touch Snakefile
+ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin
+ PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages
+ snakemake --bash-completion
+ install -t /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc
+ install -d /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles
+ cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles
'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/README.md'
'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/ftdetect'
'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/ftdetect/snakemake.vim'
'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin'
'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake'
'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim'
'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim'
'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/syntax'
'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/syntax/snakemake.vim'
+ find /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete
/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/vim/vimfiles/README.md
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 7.32.4-1.fc40 --unique-debug-suffix -7.32.4-1.fc40.x86_64 --unique-debug-src-base snakemake-7.32.4-1.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-7.32.4
find-debuginfo: starting
Extracting debug info from 0 files
Creating .debug symlinks for symlinks to ELF files
find: ‘debug’: No such file or directory
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.IctP8V
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.32.4
+ k='not test_lint[long_run-positive]'
+ k='not test_lint[long_run-positive] and not test_tibanna'
+ k='not test_lint[long_run-positive] and not test_tibanna and not test_tes'
+ k='not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_'
+ ignore=' --ignore=tests/test_google_lifesciences.py'
+ ignore=' --ignore=tests/test_google_lifesciences.py --ignore-glob=tests/test_conda_python_3_7_script/*'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ PATH=/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/lib/python3.12/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=2
+ /usr/bin/pytest -v -k 'not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' --ignore=tests/test_google_lifesciences.py '--ignore-glob=tests/test_conda_python_3_7_script/*'
============================= test session starts ==============================
platform linux -- Python 3.12.0rc2, pytest-7.4.2, pluggy-1.2.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/snakemake-7.32.4
plugins: requests-mock-1.10.0
collecting ... collected 66 items / 8 deselected / 58 selected
tests/test_azure_batch_executor.py::test_az_batch_executor SKIPPED (...) [ 1%]
tests/test_expand.py::test_simple_expand PASSED [ 3%]
tests/test_expand.py::test_allow_missing PASSED [ 5%]
tests/test_io.py::test_wildcard_regex PASSED [ 6%]
tests/test_io.py::test_expand PASSED [ 8%]
tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 10%]
tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 12%]
tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 13%]
tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 15%]
tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 17%]
tests/test_linting.py::test_lint[version-positive] PASSED [ 18%]
tests/test_linting.py::test_lint[version-negative] PASSED [ 20%]
tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 22%]
tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 24%]
tests/test_linting.py::test_lint[singularity-positive] PASSED [ 25%]
tests/test_linting.py::test_lint[singularity-negative] PASSED [ 27%]
tests/test_linting.py::test_lint[path_add-positive] PASSED [ 29%]
tests/test_linting.py::test_lint[path_add-negative] PASSED [ 31%]
tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 32%]
tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 34%]
tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 36%]
tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 37%]
tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 39%]
tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 41%]
tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 43%]
tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 44%]
tests/test_linting.py::test_lint[long_run-negative] PASSED [ 46%]
tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 48%]
tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 50%]
tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 51%]
tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 53%]
tests/test_linting.py::test_lint[envvars-positive] PASSED [ 55%]
tests/test_linting.py::test_lint[envvars-negative] PASSED [ 56%]
tests/test_linting.py::test_lint[dynamic-positive] PASSED [ 58%]
tests/test_linting.py::test_lint[dynamic-negative] PASSED [ 60%]
tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 62%]
tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 63%]
tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 65%]
tests/test_schema.py::test_config PASSED [ 67%]
tests/test_schema.py::test_config_ref PASSED [ 68%]
tests/test_schema.py::test_dataframe PASSED [ 70%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 72%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 74%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 75%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 77%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 79%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 81%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 82%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 84%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 86%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 87%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 89%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 91%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 93%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%]
tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%]
tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%]
=============================== warnings summary ===============================
tests/test_schema.py: 12 warnings
/builddir/build/BUILD/snakemake-7.32.4/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need.
from jsonschema import validators, RefResolver
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121: DeprecationWarning: pkg_resources is deprecated as an API
warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google.cloud')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2349: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(parent)
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google.logging')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('sphinxcontrib')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/google/rpc/__init__.py:20: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google.rpc')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
pkg_resources.declare_namespace(__name__)
tests/test_schema.py::test_config
<frozen importlib._bootstrap>:488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14.
tests/test_schema.py::test_config
<frozen importlib._bootstrap>:488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14.
tests/test_schema.py::test_config
/usr/lib64/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC).
_EPOCH_DATETIME = datetime.utcfromtimestamp(0)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========== 52 passed, 6 skipped, 8 deselected, 32 warnings in 16.50s ===========
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: snakemake-7.32.4-1.fc40.noarch
Provides: python3.12dist(snakemake) = 7.32.4 python3dist(snakemake) = 7.32.4 snakemake = 7.32.4-1.fc40 vim-snakemake = 7.32.4-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pulp) >= 2 python3.12dist(pyyaml) python3.12dist(requests) python3.12dist(reretry) python3.12dist(smart-open) >= 3 python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(toposort) >= 1.10 python3.12dist(wrapt)
Processing files: snakemake-doc-7.32.4-1.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.EqLfnQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ DOCDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.4/CODE_OF_CONDUCT.md /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.4/README.md /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-nano.md /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-vim.md /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex/Snakemake.pdf /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.bADWXt
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ LICENSEDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/licenses/snakemake-doc
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/licenses/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.4/LICENSE.md /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64/usr/share/licenses/snakemake-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: snakemake-doc = 7.32.4-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: snakemake+reports-7.32.4-1.fc40.noarch
Provides: python3.12dist(snakemake[reports]) = 7.32.4 python3dist(snakemake[reports]) = 7.32.4 snakemake+reports = 7.32.4-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(pygments)
Processing files: snakemake+messaging-7.32.4-1.fc40.noarch
Provides: python3.12dist(snakemake[messaging]) = 7.32.4 python3dist(snakemake[messaging]) = 7.32.4 snakemake+messaging = 7.32.4-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(slacker)
Processing files: snakemake+google-cloud-7.32.4-1.fc40.noarch
Provides: python3.12dist(snakemake[google-cloud]) = 7.32.4 python3dist(snakemake[google-cloud]) = 7.32.4 snakemake+google-cloud = 7.32.4-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(google-api-python-client) python3.12dist(google-cloud-storage) python3.12dist(google-crc32c) python3.12dist(oauth2client)
Processing files: snakemake+azure-7.32.4-1.fc40.noarch
Provides: python3.12dist(snakemake[azure]) = 7.32.4 python3dist(snakemake[azure]) = 7.32.4 snakemake+azure = 7.32.4-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(azure-batch) python3.12dist(azure-core) python3.12dist(azure-identity) python3.12dist(azure-mgmt-batch) python3.12dist(azure-storage-blob)
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64
Wrote: /builddir/build/SRPMS/snakemake-7.32.4-1.fc40.src.rpm
Wrote: /builddir/build/RPMS/snakemake-doc-7.32.4-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+reports-7.32.4-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+messaging-7.32.4-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+google-cloud-7.32.4-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+azure-7.32.4-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake-7.32.4-1.fc40.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.zsbIDB
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.4
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-1.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.QLFbpT
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS
+ rm -rf snakemake-7.32.4 snakemake-7.32.4.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild snakemake-7.32.4-1.fc40.src.rpm
Finish: build phase for snakemake-7.32.4-1.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1695064857.894917/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1695064857.894917/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1695064857.894917/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-1.fc40.src.rpm) Config(child) 2 minutes 38 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
"packages": [
{
"name": "snakemake",
"epoch": null,
"version": "7.32.4",
"release": "1.fc40",
"arch": "noarch"
},
{
"name": "snakemake+messaging",
"epoch": null,
"version": "7.32.4",
"release": "1.fc40",
"arch": "noarch"
},
{
"name": "snakemake-doc",
"epoch": null,
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RPMResults finished