Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c188' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8297830-fedora-41-x86_64 --chroot fedora-41-x86_64
Version: 1.2
PID: 8734
Logging PID: 8735
Task:
{'allow_user_ssh': False,
'appstream': False,
'background': True,
'build_id': 8297830,
'buildroot_pkgs': [],
'chroot': 'fedora-41-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': '7cb50615f7819217cfe177f0ea5076812612f8b5',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:6/morphio',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'morphio',
'package_version': '3.4.0-4',
'project_dirname': 'automatic-obsoletes:pr:6',
'project_name': 'automatic-obsoletes',
'project_owner': 'torsava',
'repo_priority': None,
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-41-x86_64/',
'id': 'copr_base',
'name': 'Copr repository',
'priority': None}],
'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/packit',
'source_json': {},
'source_type': None,
'ssh_public_keys': None,
'storage': None,
'submitter': 'https://src.fedoraproject.org/user/packit',
'tags': [],
'task_id': '8297830-fedora-41-x86_64',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:6/morphio /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes:pr:6/morphio', '/var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio'...
Running: git checkout 7cb50615f7819217cfe177f0ea5076812612f8b5 --
cmd: ['git', 'checkout', '7cb50615f7819217cfe177f0ea5076812612f8b5', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio
rc: 0
stdout:
stderr: Note: switching to '7cb50615f7819217cfe177f0ea5076812612f8b5'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 7cb5061 automatic import of morphio
Running: dist-git-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1732210602.760077 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1732210602.760077 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio/morphio.spec) Config(fedora-41-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.9
INFO: Mock Version: 5.9
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210602.760077/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41
INFO: Pulling image: registry.fedoraproject.org/fedora:41
INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-x86_64-bootstrap-1732210602.760077/root
INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount
INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/fbf251198d865bcc0302539eac8fc14533bce6e70eaa008da56576c9bd2c73ac/merged
INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/fbf251198d865bcc0302539eac8fc14533bce6e70eaa008da56576c9bd2c73ac/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1732210602.760077/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.20.0-1.fc41.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
dnf5-5.2.7.0-1.fc41.x86_64
dnf5-plugins-5.2.7.0-1.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
updates 100% | 848.3 KiB/s | 5.1 MiB | 00m06s
fedora 100% | 21.6 MiB/s | 35.4 MiB | 00m02s
Copr repository 100% | 15.9 MiB/s | 3.9 MiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing group/module packages:
bash x86_64 5.2.32-1.fc41 fedora 8.2 MiB
bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB
coreutils x86_64 9.5-11.fc41 updates 5.7 MiB
cpio x86_64 2.15-2.fc41 fedora 1.1 MiB
diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB
fedora-release-common noarch 41-27 updates 19.6 KiB
findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB
gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB
glibc-minimal-langpack x86_64 2.40-11.fc41 updates 0.0 B
grep x86_64 3.11-9.fc41 fedora 1.0 MiB
gzip x86_64 1.13-2.fc41 fedora 389.0 KiB
info x86_64 7.1-3.fc41 fedora 361.8 KiB
patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB
redhat-rpm-config noarch 293-1.fc41 fedora 183.5 KiB
rpm-build x86_64 4.20.0-1.fc41 copr_base 194.3 KiB
sed x86_64 4.9-3.fc41 fedora 861.5 KiB
shadow-utils x86_64 2:4.15.1-12.fc41 fedora 4.1 MiB
tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB
unzip x86_64 6.0-64.fc41 fedora 386.8 KiB
util-linux x86_64 2.40.2-8.fc41 copr_base 3.6 MiB
which x86_64 2.21-42.fc41 fedora 80.2 KiB
xz x86_64 1:5.6.2-2.fc41 fedora 1.2 MiB
Installing dependencies:
add-determinism x86_64 0.3.6-3.fc41 updates 2.4 MiB
alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB
ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB
audit-libs x86_64 4.0.2-1.fc41 copr_base 331.3 KiB
authselect x86_64 1.5.0-8.fc41 fedora 157.6 KiB
authselect-libs x86_64 1.5.0-8.fc41 fedora 822.2 KiB
basesystem noarch 11-21.fc41 fedora 0.0 B
binutils x86_64 2.43.1-2.fc41 fedora 27.5 MiB
build-reproducibility-srpm-macros noarch 0.3.6-3.fc41 updates 735.0 B
bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB
ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc41 fedora 2.4 MiB
coreutils-common x86_64 9.5-11.fc41 updates 11.2 MiB
cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB
crypto-policies noarch 20241029-1.git8baf557.fc41 updates 136.9 KiB
curl x86_64 8.9.1-2.fc41 fedora 796.2 KiB
cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB
debugedit x86_64 5.1-1.fc41 updates 199.8 KiB
dwz x86_64 0.15-8.fc41 fedora 298.9 KiB
ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB
efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB
elfutils x86_64 0.192-6.fc41 updates 2.7 MiB
elfutils-debuginfod-client x86_64 0.192-6.fc41 updates 84.1 KiB
elfutils-default-yama-scope noarch 0.192-6.fc41 updates 1.8 KiB
elfutils-libelf x86_64 0.192-6.fc41 updates 1.2 MiB
elfutils-libs x86_64 0.192-6.fc41 updates 666.3 KiB
fedora-gpg-keys noarch 41-1 fedora 126.4 KiB
fedora-release noarch 41-27 updates 0.0 B
fedora-release-identity-basic noarch 41-27 updates 682.0 B
fedora-repos noarch 41-1 fedora 4.9 KiB
file x86_64 5.45-8.fc41 copr_base 103.5 KiB
file-libs x86_64 5.45-8.fc41 copr_base 9.9 MiB
filesystem x86_64 3.18-23.fc41 fedora 106.0 B
fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB
forge-srpm-macros noarch 0.3.2-1.fc41 fedora 39.0 KiB
fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B
gdb-minimal x86_64 15.2-3.fc41 updates 13.0 MiB
gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB
gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB
ghc-srpm-macros noarch 1.9.1-2.fc41 fedora 747.0 B
glibc x86_64 2.40-11.fc41 updates 6.7 MiB
glibc-common x86_64 2.40-11.fc41 updates 1.0 MiB
glibc-gconv-extra x86_64 2.40-11.fc41 updates 8.0 MiB
gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB
gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB
go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB
jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB
json-c x86_64 0.17-4.fc41 fedora 82.4 KiB
kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB
keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB
krb5-libs x86_64 1.21.3-3.fc41 updates 2.3 MiB
libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB
libarchive x86_64 3.7.4-4.fc41 updates 926.6 KiB
libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB
libblkid x86_64 2.40.2-8.fc41 copr_base 262.5 KiB
libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB
libcap x86_64 2.70-4.fc41 fedora 220.2 KiB
libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB
libcom_err x86_64 1.47.1-6.fc41 fedora 67.2 KiB
libcurl x86_64 8.9.1-2.fc41 fedora 818.1 KiB
libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB
libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB
libfdisk x86_64 2.40.2-8.fc41 copr_base 362.9 KiB
libffi x86_64 3.4.6-3.fc41 fedora 86.4 KiB
libgcc x86_64 14.2.1-3.fc41 fedora 274.6 KiB
libgomp x86_64 14.2.1-3.fc41 fedora 523.5 KiB
libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB
libmount x86_64 2.40.2-8.fc41 copr_base 351.8 KiB
libnghttp2 x86_64 1.62.1-2.fc41 fedora 166.1 KiB
libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB
libpkgconf x86_64 2.3.0-1.fc41 fedora 78.2 KiB
libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB
libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB
libselinux x86_64 3.7-7.fc41 copr_base 181.0 KiB
libsemanage x86_64 3.7-4.fc41 copr_base 297.5 KiB
libsepol x86_64 3.7-2.fc41 fedora 817.8 KiB
libsmartcols x86_64 2.40.2-8.fc41 copr_base 180.4 KiB
libssh x86_64 0.10.6-8.fc41 fedora 513.3 KiB
libssh-config noarch 0.10.6-8.fc41 fedora 277.0 B
libstdc++ x86_64 14.2.1-3.fc41 fedora 2.8 MiB
libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB
libtirpc x86_64 1.3.6-1.fc41 updates 202.7 KiB
libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB
libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB
libuuid x86_64 2.40.2-8.fc41 copr_base 41.4 KiB
libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB
libxcrypt x86_64 4.4.36-10.fc41 updates 271.4 KiB
libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB
libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB
lua-libs x86_64 5.4.6-6.fc41 fedora 285.0 KiB
lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB
lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB
mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB
ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB
ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB
ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB
openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B
openldap x86_64 2.6.8-5.fc41 fedora 644.2 KiB
openssl-libs x86_64 1:3.2.2-9.fc41 fedora 7.8 MiB
p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB
p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB
package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB
pam x86_64 1.6.1-6.fc41 updates 1.8 MiB
pam-libs x86_64 1.6.1-6.fc41 updates 139.0 KiB
pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB
pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB
perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B
pkgconf x86_64 2.3.0-1.fc41 fedora 88.6 KiB
pkgconf-m4 noarch 2.3.0-1.fc41 fedora 14.4 KiB
pkgconf-pkg-config x86_64 2.3.0-1.fc41 fedora 989.0 B
popt x86_64 1.19-7.fc41 fedora 136.9 KiB
publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB
pyproject-srpm-macros noarch 1.16.0-1.fc41 updates 1.9 KiB
python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB
qt5-srpm-macros noarch 5.15.15-1.fc41 fedora 500.0 B
qt6-srpm-macros noarch 6.8.0-1.fc41 updates 456.0 B
readline x86_64 8.2-10.fc41 fedora 493.2 KiB
rpm x86_64 4.20.0-1.fc41 copr_base 3.1 MiB
rpm-build-libs x86_64 4.20.0-1.fc41 copr_base 206.7 KiB
rpm-libs x86_64 4.20.0-1.fc41 copr_base 725.9 KiB
rpm-sequoia x86_64 1.7.0-2.fc41 fedora 2.4 MiB
rust-srpm-macros noarch 26.3-3.fc41 copr_base 4.8 KiB
setup noarch 2.15.0-5.fc41 fedora 720.7 KiB
sqlite-libs x86_64 3.46.1-1.fc41 fedora 1.4 MiB
systemd-libs x86_64 256.8-1.fc41 updates 2.0 MiB
util-linux-core x86_64 2.40.2-8.fc41 copr_base 1.5 MiB
xxhash-libs x86_64 0.8.2-4.fc41 fedora 88.4 KiB
xz-libs x86_64 1:5.6.2-2.fc41 fedora 214.4 KiB
zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB
zip x86_64 3.0-41.fc41 fedora 703.2 KiB
zlib-ng-compat x86_64 2.1.7-3.fc41 fedora 134.0 KiB
zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB
Installing groups:
Buildsystem building group
Transaction Summary:
Installing: 153 packages
Total size of inbound packages is 53 MiB. Need to download 53 MiB.
After this operation, 181 MiB extra will be used (install 181 MiB, remove 0 B).
[ 1/153] bzip2-0:1.0.8-19.fc41.x86_64 100% | 324.2 KiB/s | 52.5 KiB | 00m00s
[ 2/153] cpio-0:2.15-2.fc41.x86_64 100% | 1.4 MiB/s | 291.8 KiB | 00m00s
[ 3/153] diffutils-0:3.10-8.fc41.x86_6 100% | 3.7 MiB/s | 405.4 KiB | 00m00s
[ 4/153] bash-0:5.2.32-1.fc41.x86_64 100% | 6.4 MiB/s | 1.8 MiB | 00m00s
[ 5/153] findutils-1:4.10.0-4.fc41.x86 100% | 6.8 MiB/s | 548.5 KiB | 00m00s
[ 6/153] grep-0:3.11-9.fc41.x86_64 100% | 5.2 MiB/s | 299.7 KiB | 00m00s
[ 7/153] gzip-0:1.13-2.fc41.x86_64 100% | 3.3 MiB/s | 170.2 KiB | 00m00s
[ 8/153] info-0:7.1-3.fc41.x86_64 100% | 2.9 MiB/s | 182.5 KiB | 00m00s
[ 9/153] patch-0:2.7.6-25.fc41.x86_64 100% | 4.3 MiB/s | 131.0 KiB | 00m00s
[ 10/153] redhat-rpm-config-0:293-1.fc4 100% | 3.1 MiB/s | 82.0 KiB | 00m00s
[ 11/153] sed-0:4.9-3.fc41.x86_64 100% | 6.1 MiB/s | 317.7 KiB | 00m00s
[ 12/153] tar-2:1.35-4.fc41.x86_64 100% | 11.5 MiB/s | 860.7 KiB | 00m00s
[ 13/153] unzip-0:6.0-64.fc41.x86_64 100% | 5.5 MiB/s | 184.9 KiB | 00m00s
[ 14/153] shadow-utils-2:4.15.1-12.fc41 100% | 13.9 MiB/s | 1.3 MiB | 00m00s
[ 15/153] which-0:2.21-42.fc41.x86_64 100% | 1.6 MiB/s | 41.6 KiB | 00m00s
[ 16/153] xz-1:5.6.2-2.fc41.x86_64 100% | 5.6 MiB/s | 471.5 KiB | 00m00s
[ 17/153] gawk-0:5.3.0-4.fc41.x86_64 100% | 16.0 MiB/s | 1.1 MiB | 00m00s
[ 18/153] fedora-release-common-0:41-27 100% | 112.9 KiB/s | 23.4 KiB | 00m00s
[ 19/153] rpm-build-0:4.20.0-1.fc41.x86 100% | 1.9 MiB/s | 75.8 KiB | 00m00s
[ 20/153] util-linux-0:2.40.2-8.fc41.x8 100% | 24.9 MiB/s | 1.1 MiB | 00m00s
[ 21/153] filesystem-0:3.18-23.fc41.x86 100% | 19.1 MiB/s | 1.1 MiB | 00m00s
[ 22/153] ncurses-libs-0:6.5-2.20240629 100% | 8.2 MiB/s | 334.0 KiB | 00m00s
[ 23/153] glibc-minimal-langpack-0:2.40 100% | 375.4 KiB/s | 110.7 KiB | 00m00s
[ 24/153] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 956.1 KiB/s | 41.1 KiB | 00m00s
[ 25/153] coreutils-0:9.5-11.fc41.x86_6 100% | 2.4 MiB/s | 1.1 MiB | 00m00s
[ 26/153] ed-0:1.20.2-2.fc41.x86_64 100% | 3.1 MiB/s | 81.8 KiB | 00m00s
[ 27/153] pcre2-0:10.44-1.fc41.1.x86_64 100% | 4.6 MiB/s | 243.1 KiB | 00m00s
[ 28/153] ansible-srpm-macros-0:1-16.fc 100% | 831.0 KiB/s | 20.8 KiB | 00m00s
[ 29/153] dwz-0:0.15-8.fc41.x86_64 100% | 5.0 MiB/s | 138.9 KiB | 00m00s
[ 30/153] libattr-0:2.5.2-4.fc41.x86_64 100% | 403.8 KiB/s | 18.2 KiB | 00m00s
[ 31/153] efi-srpm-macros-0:5-12.fc41.n 100% | 895.0 KiB/s | 22.4 KiB | 00m00s
[ 32/153] fonts-srpm-macros-1:2.0.5-17. 100% | 1.1 MiB/s | 27.0 KiB | 00m00s
[ 33/153] forge-srpm-macros-0:0.3.2-1.f 100% | 788.1 KiB/s | 19.7 KiB | 00m00s
[ 34/153] fpc-srpm-macros-0:1.3-13.fc41 100% | 318.5 KiB/s | 8.0 KiB | 00m00s
[ 35/153] ghc-srpm-macros-0:1.9.1-2.fc4 100% | 362.3 KiB/s | 9.1 KiB | 00m00s
[ 36/153] gnat-srpm-macros-0:6-6.fc41.n 100% | 358.1 KiB/s | 9.0 KiB | 00m00s
[ 37/153] go-srpm-macros-0:3.6.0-3.fc41 100% | 1.1 MiB/s | 28.0 KiB | 00m00s
[ 38/153] kernel-srpm-macros-0:1.0-24.f 100% | 394.7 KiB/s | 9.9 KiB | 00m00s
[ 39/153] lua-srpm-macros-0:1-14.fc41.n 100% | 355.2 KiB/s | 8.9 KiB | 00m00s
[ 40/153] ocaml-srpm-macros-0:10-3.fc41 100% | 368.0 KiB/s | 9.2 KiB | 00m00s
[ 41/153] openblas-srpm-macros-0:2-18.f 100% | 308.6 KiB/s | 7.7 KiB | 00m00s
[ 42/153] package-notes-srpm-macros-0:0 100% | 393.2 KiB/s | 9.8 KiB | 00m00s
[ 43/153] perl-srpm-macros-0:1-56.fc41. 100% | 340.5 KiB/s | 8.5 KiB | 00m00s
[ 44/153] python-srpm-macros-0:3.13-3.f 100% | 948.9 KiB/s | 23.7 KiB | 00m00s
[ 45/153] qt5-srpm-macros-0:5.15.15-1.f 100% | 355.9 KiB/s | 8.9 KiB | 00m00s
[ 46/153] zig-srpm-macros-0:1-3.fc41.no 100% | 324.9 KiB/s | 8.1 KiB | 00m00s
[ 47/153] zip-0:3.0-41.fc41.x86_64 100% | 8.6 MiB/s | 264.8 KiB | 00m00s
[ 48/153] libacl-0:2.3.2-2.fc41.x86_64 100% | 521.3 KiB/s | 24.5 KiB | 00m00s
[ 49/153] libeconf-0:0.6.2-3.fc41.x86_6 100% | 684.6 KiB/s | 32.2 KiB | 00m00s
[ 50/153] setup-0:2.15.0-5.fc41.noarch 100% | 3.0 MiB/s | 154.4 KiB | 00m00s
[ 51/153] xz-libs-1:5.6.2-2.fc41.x86_64 100% | 2.4 MiB/s | 111.8 KiB | 00m00s
[ 52/153] libcap-0:2.70-4.fc41.x86_64 100% | 3.1 MiB/s | 86.7 KiB | 00m00s
[ 53/153] gmp-1:6.3.0-2.fc41.x86_64 100% | 6.1 MiB/s | 318.0 KiB | 00m00s
[ 54/153] fedora-repos-0:41-1.noarch 100% | 225.2 KiB/s | 9.2 KiB | 00m00s
[ 55/153] coreutils-common-0:9.5-11.fc4 100% | 16.6 MiB/s | 2.1 MiB | 00m00s
[ 56/153] openssl-libs-1:3.2.2-9.fc41.x 100% | 25.4 MiB/s | 2.3 MiB | 00m00s
[ 57/153] mpfr-0:4.2.1-5.fc41.x86_64 100% | 7.2 MiB/s | 346.3 KiB | 00m00s
[ 58/153] readline-0:8.2-10.fc41.x86_64 100% | 4.1 MiB/s | 213.2 KiB | 00m00s
[ 59/153] glibc-common-0:2.40-11.fc41.x 100% | 7.1 MiB/s | 399.4 KiB | 00m00s
[ 60/153] popt-0:1.19-7.fc41.x86_64 100% | 1.1 MiB/s | 65.9 KiB | 00m00s
[ 61/153] zstd-0:1.5.6-2.fc41.x86_64 100% | 8.5 MiB/s | 481.5 KiB | 00m00s
[ 62/153] zlib-ng-compat-0:2.1.7-3.fc41 100% | 2.7 MiB/s | 77.7 KiB | 00m00s
[ 63/153] libblkid-0:2.40.2-8.fc41.x86_ 100% | 8.8 MiB/s | 125.5 KiB | 00m00s
[ 64/153] libfdisk-0:2.40.2-8.fc41.x86_ 100% | 13.0 MiB/s | 159.9 KiB | 00m00s
[ 65/153] libmount-0:2.40.2-8.fc41.x86_ 100% | 12.7 MiB/s | 156.2 KiB | 00m00s
[ 66/153] libsmartcols-0:2.40.2-8.fc41. 100% | 6.9 MiB/s | 84.4 KiB | 00m00s
[ 67/153] libuuid-0:2.40.2-8.fc41.x86_6 100% | 3.2 MiB/s | 29.5 KiB | 00m00s
[ 68/153] util-linux-core-0:2.40.2-8.fc 100% | 34.0 MiB/s | 521.5 KiB | 00m00s
[ 69/153] libgcc-0:14.2.1-3.fc41.x86_64 100% | 3.3 MiB/s | 133.3 KiB | 00m00s
[ 70/153] ca-certificates-0:2024.2.69_v 100% | 12.5 MiB/s | 871.2 KiB | 00m00s
[ 71/153] fedora-gpg-keys-0:41-1.noarch 100% | 3.0 MiB/s | 133.7 KiB | 00m00s
[ 72/153] libstdc++-0:14.2.1-3.fc41.x86 100% | 12.7 MiB/s | 887.8 KiB | 00m00s
[ 73/153] lz4-libs-0:1.10.0-1.fc41.x86_ 100% | 1.4 MiB/s | 70.7 KiB | 00m00s
[ 74/153] glibc-0:2.40-11.fc41.x86_64 100% | 27.1 MiB/s | 2.2 MiB | 00m00s
[ 75/153] glibc-gconv-extra-0:2.40-11.f 100% | 23.4 MiB/s | 1.7 MiB | 00m00s
[ 76/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 318.3 KiB/s | 149.9 KiB | 00m00s
[ 77/153] libxcrypt-0:4.4.36-10.fc41.x8 100% | 2.4 MiB/s | 118.9 KiB | 00m00s
[ 78/153] basesystem-0:11-21.fc41.noarc 100% | 72.3 KiB/s | 7.4 KiB | 00m00s
[ 79/153] libselinux-0:3.7-7.fc41.x86_6 100% | 8.7 MiB/s | 89.2 KiB | 00m00s
[ 80/153] ncurses-base-0:6.5-2.20240629 100% | 153.9 KiB/s | 88.3 KiB | 00m01s
[ 81/153] systemd-libs-0:256.8-1.fc41.x 100% | 12.5 MiB/s | 732.1 KiB | 00m00s
[ 82/153] libsepol-0:3.7-2.fc41.x86_64 100% | 7.8 MiB/s | 342.2 KiB | 00m00s
[ 83/153] alternatives-0:1.30-1.fc41.x8 100% | 1.3 MiB/s | 42.5 KiB | 00m00s
[ 84/153] jansson-0:2.13.1-10.fc41.x86_ 100% | 1.7 MiB/s | 44.4 KiB | 00m00s
[ 85/153] authselect-libs-0:1.5.0-8.fc4 100% | 2.5 MiB/s | 218.0 KiB | 00m00s
[ 86/153] binutils-0:2.43.1-2.fc41.x86_ 100% | 56.6 MiB/s | 6.5 MiB | 00m00s
[ 87/153] pam-0:1.6.1-6.fc41.x86_64 100% | 9.8 MiB/s | 554.4 KiB | 00m00s
[ 88/153] authselect-0:1.5.0-8.fc41.x86 100% | 2.7 MiB/s | 145.8 KiB | 00m00s
[ 89/153] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 1.1 MiB/s | 56.3 KiB | 00m00s
[ 90/153] pam-libs-0:1.6.1-6.fc41.x86_6 100% | 535.1 KiB/s | 57.3 KiB | 00m00s
[ 91/153] audit-libs-0:4.0.2-1.fc41.x86 100% | 12.4 MiB/s | 126.7 KiB | 00m00s
[ 92/153] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 643.7 KiB/s | 29.6 KiB | 00m00s
[ 93/153] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 794.2 KiB/s | 32.6 KiB | 00m00s
[ 94/153] debugedit-0:5.1-1.fc41.x86_64 100% | 1.6 MiB/s | 78.1 KiB | 00m00s
[ 95/153] elfutils-debuginfod-client-0: 100% | 757.6 KiB/s | 46.2 KiB | 00m00s
[ 96/153] elfutils-libelf-0:0.192-6.fc4 100% | 4.1 MiB/s | 207.4 KiB | 00m00s
[ 97/153] json-c-0:0.17-4.fc41.x86_64 100% | 1.1 MiB/s | 44.0 KiB | 00m00s
[ 98/153] elfutils-libs-0:0.192-6.fc41. 100% | 5.0 MiB/s | 261.9 KiB | 00m00s
[ 99/153] libzstd-0:1.5.6-2.fc41.x86_64 100% | 6.2 MiB/s | 310.3 KiB | 00m00s
[100/153] file-0:5.45-8.fc41.x86_64 100% | 5.3 MiB/s | 49.2 KiB | 00m00s
[101/153] libarchive-0:3.7.4-4.fc41.x86 100% | 7.5 MiB/s | 409.1 KiB | 00m00s
[102/153] file-libs-0:5.45-8.fc41.x86_6 100% | 43.8 MiB/s | 762.6 KiB | 00m00s
[103/153] elfutils-0:0.192-6.fc41.x86_6 100% | 2.8 MiB/s | 547.2 KiB | 00m00s
[104/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 400.4 KiB/s | 10.0 KiB | 00m00s
[105/153] pkgconf-0:2.3.0-1.fc41.x86_64 100% | 1.8 MiB/s | 45.2 KiB | 00m00s
[106/153] pkgconf-m4-0:2.3.0-1.fc41.noa 100% | 572.9 KiB/s | 14.3 KiB | 00m00s
[107/153] rpm-0:4.20.0-1.fc41.x86_64 100% | 33.8 MiB/s | 519.8 KiB | 00m00s
[108/153] libpkgconf-0:2.3.0-1.fc41.x86 100% | 1.3 MiB/s | 38.5 KiB | 00m00s
[109/153] rpm-build-libs-0:4.20.0-1.fc4 100% | 9.7 MiB/s | 99.1 KiB | 00m00s
[110/153] curl-0:8.9.1-2.fc41.x86_64 100% | 6.2 MiB/s | 315.1 KiB | 00m00s
[111/153] lua-libs-0:5.4.6-6.fc41.x86_6 100% | 3.4 MiB/s | 132.0 KiB | 00m00s
[112/153] libgomp-0:14.2.1-3.fc41.x86_6 100% | 7.1 MiB/s | 354.1 KiB | 00m00s
[113/153] rpm-libs-0:4.20.0-1.fc41.x86_ 100% | 16.8 MiB/s | 309.9 KiB | 00m00s
[114/153] libsemanage-0:3.7-4.fc41.x86_ 100% | 10.5 MiB/s | 117.9 KiB | 00m00s
[115/153] sqlite-libs-0:3.46.1-1.fc41.x 100% | 12.9 MiB/s | 712.7 KiB | 00m00s
[116/153] rpm-sequoia-0:1.7.0-2.fc41.x8 100% | 15.3 MiB/s | 892.5 KiB | 00m00s
[117/153] build-reproducibility-srpm-ma 100% | 196.8 KiB/s | 10.8 KiB | 00m00s
[118/153] pyproject-srpm-macros-0:1.16. 100% | 261.3 KiB/s | 13.6 KiB | 00m00s
[119/153] rust-srpm-macros-0:26.3-3.fc4 100% | 1.4 MiB/s | 12.7 KiB | 00m00s
[120/153] qt6-srpm-macros-0:6.8.0-1.fc4 100% | 188.5 KiB/s | 9.0 KiB | 00m00s
[121/153] add-determinism-0:0.3.6-3.fc4 100% | 7.8 MiB/s | 875.9 KiB | 00m00s
[122/153] libtirpc-0:1.3.6-1.fc41.x86_6 100% | 1.9 MiB/s | 94.4 KiB | 00m00s
[123/153] crypto-policies-0:20241029-1. 100% | 1.3 MiB/s | 97.5 KiB | 00m00s
[124/153] libcom_err-0:1.47.1-6.fc41.x8 100% | 648.0 KiB/s | 26.6 KiB | 00m00s
[125/153] libffi-0:3.4.6-3.fc41.x86_64 100% | 998.6 KiB/s | 39.9 KiB | 00m00s
[126/153] libtasn1-0:4.19.0-9.fc41.x86_ 100% | 1.4 MiB/s | 74.2 KiB | 00m00s
[127/153] p11-kit-0:0.25.5-3.fc41.x86_6 100% | 7.5 MiB/s | 490.9 KiB | 00m00s
[128/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 2.5 MiB/s | 132.1 KiB | 00m00s
[129/153] gdbm-1:1.23-7.fc41.x86_64 100% | 3.4 MiB/s | 151.8 KiB | 00m00s
[130/153] libpwquality-0:1.4.5-11.fc41. 100% | 2.2 MiB/s | 119.0 KiB | 00m00s
[131/153] cracklib-0:2.9.11-6.fc41.x86_ 100% | 2.0 MiB/s | 92.1 KiB | 00m00s
[132/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 736.0 KiB/s | 31.6 KiB | 00m00s
[133/153] krb5-libs-0:1.21.3-3.fc41.x86 100% | 13.0 MiB/s | 757.9 KiB | 00m00s
[134/153] libverto-0:0.3.2-9.fc41.x86_6 100% | 413.8 KiB/s | 20.7 KiB | 00m00s
[135/153] libxml2-0:2.12.8-2.fc41.x86_6 100% | 15.3 MiB/s | 687.3 KiB | 00m00s
[136/153] elfutils-default-yama-scope-0 100% | 256.9 KiB/s | 12.3 KiB | 00m00s
[137/153] xxhash-libs-0:0.8.2-4.fc41.x8 100% | 1.4 MiB/s | 36.8 KiB | 00m00s
[138/153] fedora-release-0:41-27.noarch 100% | 261.8 KiB/s | 12.6 KiB | 00m00s
[139/153] libcurl-0:8.9.1-2.fc41.x86_64 100% | 7.7 MiB/s | 361.9 KiB | 00m00s
[140/153] libidn2-0:2.3.7-2.fc41.x86_64 100% | 2.8 MiB/s | 118.4 KiB | 00m00s
[141/153] libnghttp2-0:1.62.1-2.fc41.x8 100% | 1.4 MiB/s | 76.6 KiB | 00m00s
[142/153] gdb-minimal-0:15.2-3.fc41.x86 100% | 24.4 MiB/s | 4.3 MiB | 00m00s
[143/153] libpsl-0:0.21.5-4.fc41.x86_64 100% | 1.0 MiB/s | 64.1 KiB | 00m00s
[144/153] libssh-0:0.10.6-8.fc41.x86_64 100% | 4.4 MiB/s | 211.8 KiB | 00m00s
[145/153] openldap-0:2.6.8-5.fc41.x86_6 100% | 5.4 MiB/s | 255.6 KiB | 00m00s
[146/153] publicsuffix-list-dafsa-0:202 100% | 2.2 MiB/s | 58.3 KiB | 00m00s
[147/153] libunistring-0:1.1-8.fc41.x86 100% | 10.4 MiB/s | 544.8 KiB | 00m00s
[148/153] libssh-config-0:0.10.6-8.fc41 100% | 369.6 KiB/s | 9.2 KiB | 00m00s
[149/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 18.1 MiB/s | 794.9 KiB | 00m00s
[150/153] libevent-0:2.1.12-14.fc41.x86 100% | 6.3 MiB/s | 257.5 KiB | 00m00s
[151/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 547.5 KiB/s | 35.6 KiB | 00m00s
[152/153] fedora-release-identity-basic 100% | 278.5 KiB/s | 13.4 KiB | 00m00s
[153/153] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 5.8 MiB/s | 340.5 KiB | 00m00s
--------------------------------------------------------------------------------
[153/153] Total 100% | 16.3 MiB/s | 53.1 MiB | 00m03s
Running transaction
Importing PGP key 0xE99D6AD1:
UserID : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
[ 1/155] Verify package files 100% | 739.0 B/s | 153.0 B | 00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> Finished pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64
>>> [RPM] /var/lib/mock/fedora-41-x86_64-1732210602.760077/root/var/cache/dnf/co
[ 2/155] Prepare transaction 100% | 1.8 KiB/s | 153.0 B | 00m00s
[ 3/155] Installing libgcc-0:14.2.1-3. 100% | 134.9 MiB/s | 276.3 KiB | 00m00s
[ 4/155] Installing fedora-release-ide 100% | 918.0 KiB/s | 940.0 B | 00m00s
[ 5/155] Installing fedora-gpg-keys-0: 100% | 18.7 MiB/s | 172.2 KiB | 00m00s
[ 6/155] Installing fedora-repos-0:41- 100% | 0.0 B/s | 5.7 KiB | 00m00s
[ 7/155] Installing fedora-release-com 100% | 11.7 MiB/s | 23.9 KiB | 00m00s
[ 8/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s
[ 9/155] Installing setup-0:2.15.0-5.f 100% | 47.3 MiB/s | 726.1 KiB | 00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 10/155] Installing filesystem-0:3.18- 100% | 1.6 MiB/s | 212.5 KiB | 00m00s
[ 11/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s
[ 12/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s
[ 13/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s
[ 14/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s
[ 15/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s
[ 16/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s
[ 17/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s
[ 18/155] Installing ncurses-base-0:6.5 100% | 34.3 MiB/s | 351.7 KiB | 00m00s
[ 19/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s
[ 20/155] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB | 00m00s
[ 21/155] Installing glibc-0:2.40-11.fc 100% | 215.4 MiB/s | 6.7 MiB | 00m00s
[ 22/155] Installing bash-0:5.2.32-1.fc 100% | 281.7 MiB/s | 8.2 MiB | 00m00s
[ 23/155] Installing glibc-common-0:2.4 100% | 116.3 MiB/s | 1.0 MiB | 00m00s
[ 24/155] Installing glibc-gconv-extra- 100% | 144.6 MiB/s | 8.1 MiB | 00m00s
[ 25/155] Installing zlib-ng-compat-0:2 100% | 131.6 MiB/s | 134.8 KiB | 00m00s
[ 26/155] Installing bzip2-libs-0:1.0.8 100% | 79.9 MiB/s | 81.8 KiB | 00m00s
[ 27/155] Installing xz-libs-1:5.6.2-2. 100% | 210.4 MiB/s | 215.5 KiB | 00m00s
[ 28/155] Installing readline-0:8.2-10. 100% | 241.8 MiB/s | 495.3 KiB | 00m00s
[ 29/155] Installing popt-0:1.19-7.fc41 100% | 35.0 MiB/s | 143.5 KiB | 00m00s
[ 30/155] Installing libuuid-0:2.40.2-8 100% | 41.5 MiB/s | 42.5 KiB | 00m00s
[ 31/155] Installing libblkid-0:2.40.2- 100% | 128.7 MiB/s | 263.6 KiB | 00m00s
[ 32/155] Installing libattr-0:2.5.2-4. 100% | 28.8 MiB/s | 29.5 KiB | 00m00s
[ 33/155] Installing libacl-0:2.3.2-2.f 100% | 39.8 MiB/s | 40.7 KiB | 00m00s
[ 34/155] Installing gmp-1:6.3.0-2.fc41 100% | 198.6 MiB/s | 813.7 KiB | 00m00s
[ 35/155] Installing libstdc++-0:14.2.1 100% | 276.6 MiB/s | 2.8 MiB | 00m00s
[ 36/155] Installing libxcrypt-0:4.4.36 100% | 133.9 MiB/s | 274.1 KiB | 00m00s
[ 37/155] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.2 KiB | 00m00s
[ 38/155] Installing elfutils-libelf-0: 100% | 292.5 MiB/s | 1.2 MiB | 00m00s
[ 39/155] Installing libeconf-0:0.6.2-3 100% | 58.3 MiB/s | 59.7 KiB | 00m00s
[ 40/155] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s
[ 41/155] Installing dwz-0:0.15-8.fc41. 100% | 146.6 MiB/s | 300.3 KiB | 00m00s
[ 42/155] Installing mpfr-0:4.2.1-5.fc4 100% | 203.5 MiB/s | 833.7 KiB | 00m00s
[ 43/155] Installing gawk-0:5.3.0-4.fc4 100% | 173.2 MiB/s | 1.7 MiB | 00m00s
[ 44/155] Installing unzip-0:6.0-64.fc4 100% | 127.0 MiB/s | 390.3 KiB | 00m00s
[ 45/155] Installing file-libs-0:5.45-8 100% | 473.0 MiB/s | 9.9 MiB | 00m00s
[ 46/155] Installing file-0:5.45-8.fc41 100% | 7.3 MiB/s | 105.0 KiB | 00m00s
>>> Running pre-install scriptlet: crypto-policies-0:20241029-1.git8baf557.fc41.
>>> Finished pre-install scriptlet: crypto-policies-0:20241029-1.git8baf557.fc41
>>> Scriptlet output:
>>> /var/tmp/rpm-tmp.LC7CAq: line 2: rm: command not found
>>>
[ 47/155] Installing crypto-policies-0: 100% | 14.5 MiB/s | 163.3 KiB | 00m00s
[ 48/155] Installing pcre2-0:10.44-1.fc 100% | 213.2 MiB/s | 654.9 KiB | 00m00s
[ 49/155] Installing grep-0:3.11-9.fc41 100% | 111.5 MiB/s | 1.0 MiB | 00m00s
[ 50/155] Installing xz-1:5.6.2-2.fc41. 100% | 109.5 MiB/s | 1.2 MiB | 00m00s
[ 51/155] Installing libsmartcols-0:2.4 100% | 177.2 MiB/s | 181.5 KiB | 00m00s
[ 52/155] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s
[ 53/155] Installing libsepol-0:3.7-2.f 100% | 199.9 MiB/s | 818.8 KiB | 00m00s
[ 54/155] Installing libselinux-0:3.7-7 100% | 89.0 MiB/s | 182.3 KiB | 00m00s
[ 55/155] Installing sed-0:4.9-3.fc41.x 100% | 106.2 MiB/s | 869.7 KiB | 00m00s
[ 56/155] Installing findutils-1:4.10.0 100% | 168.9 MiB/s | 1.9 MiB | 00m00s
[ 57/155] Installing libmount-0:2.40.2- 100% | 172.3 MiB/s | 352.9 KiB | 00m00s
[ 58/155] Installing alternatives-0:1.3 100% | 66.3 MiB/s | 67.9 KiB | 00m00s
[ 59/155] Installing libcap-ng-0:0.8.5- 100% | 69.4 MiB/s | 71.0 KiB | 00m00s
[ 60/155] Installing audit-libs-0:4.0.2 100% | 162.8 MiB/s | 333.4 KiB | 00m00s
[ 61/155] Installing pam-libs-0:1.6.1-6 100% | 69.0 MiB/s | 141.2 KiB | 00m00s
[ 62/155] Installing libcap-0:2.70-4.fc 100% | 73.3 MiB/s | 225.2 KiB | 00m00s
[ 63/155] Installing systemd-libs-0:256 100% | 169.5 MiB/s | 2.0 MiB | 00m00s
[ 64/155] Installing lua-libs-0:5.4.6-6 100% | 139.8 MiB/s | 286.2 KiB | 00m00s
[ 65/155] Installing libcom_err-0:1.47. 100% | 66.7 MiB/s | 68.3 KiB | 00m00s
[ 66/155] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s
[ 67/155] Installing libtasn1-0:4.19.0- 100% | 86.7 MiB/s | 177.5 KiB | 00m00s
[ 68/155] Installing p11-kit-0:0.25.5-3 100% | 138.0 MiB/s | 2.2 MiB | 00m00s
[ 69/155] Installing libunistring-0:1.1 100% | 247.2 MiB/s | 1.7 MiB | 00m00s
[ 70/155] Installing libidn2-0:2.3.7-2. 100% | 65.4 MiB/s | 335.1 KiB | 00m00s
[ 71/155] Installing libpsl-0:0.21.5-4. 100% | 79.7 MiB/s | 81.7 KiB | 00m00s
[ 72/155] Installing p11-kit-trust-0:0. 100% | 21.3 MiB/s | 393.1 KiB | 00m00s
[ 73/155] Installing util-linux-core-0: 100% | 108.6 MiB/s | 1.5 MiB | 00m00s
[ 74/155] Installing libsemanage-0:3.7- 100% | 73.1 MiB/s | 299.3 KiB | 00m00s
[ 75/155] Installing shadow-utils-2:4.1 100% | 104.1 MiB/s | 4.2 MiB | 00m00s
[ 76/155] Installing tar-2:1.35-4.fc41. 100% | 211.3 MiB/s | 3.0 MiB | 00m00s
[ 77/155] Installing zstd-0:1.5.6-2.fc4 100% | 241.6 MiB/s | 1.7 MiB | 00m00s
[ 78/155] Installing zip-0:3.0-41.fc41. 100% | 138.1 MiB/s | 707.1 KiB | 00m00s
[ 79/155] Installing gdbm-1:1.23-7.fc41 100% | 91.0 MiB/s | 465.8 KiB | 00m00s
[ 80/155] Installing cyrus-sasl-lib-0:2 100% | 230.6 MiB/s | 2.3 MiB | 00m00s
[ 81/155] Installing libfdisk-0:2.40.2- 100% | 118.4 MiB/s | 363.9 KiB | 00m00s
[ 82/155] Installing libxml2-0:2.12.8-2 100% | 214.0 MiB/s | 1.7 MiB | 00m00s
[ 83/155] Installing bzip2-0:1.0.8-19.f 100% | 48.9 MiB/s | 100.2 KiB | 00m00s
[ 84/155] Installing sqlite-libs-0:3.46 100% | 238.2 MiB/s | 1.4 MiB | 00m00s
[ 85/155] Installing add-determinism-0: 100% | 261.8 MiB/s | 2.4 MiB | 00m00s
[ 86/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s
[ 87/155] Installing ed-0:1.20.2-2.fc41 100% | 72.8 MiB/s | 149.2 KiB | 00m00s
[ 88/155] Installing patch-0:2.7.6-25.f 100% | 43.7 MiB/s | 268.2 KiB | 00m00s
[ 89/155] Installing elfutils-default-y 100% | 157.2 KiB/s | 2.0 KiB | 00m00s
[ 90/155] Installing elfutils-libs-0:0. 100% | 130.5 MiB/s | 668.1 KiB | 00m00s
[ 91/155] Installing cpio-0:2.15-2.fc41 100% | 137.5 MiB/s | 1.1 MiB | 00m00s
[ 92/155] Installing diffutils-0:3.10-8 100% | 144.6 MiB/s | 1.6 MiB | 00m00s
[ 93/155] Installing jansson-0:2.13.1-1 100% | 87.6 MiB/s | 89.7 KiB | 00m00s
[ 94/155] Installing json-c-0:0.17-4.fc 100% | 81.7 MiB/s | 83.6 KiB | 00m00s
[ 95/155] Installing libpkgconf-0:2.3.0 100% | 77.5 MiB/s | 79.3 KiB | 00m00s
[ 96/155] Installing pkgconf-0:2.3.0-1. 100% | 44.5 MiB/s | 91.1 KiB | 00m00s
[ 97/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s
[ 98/155] Installing libgomp-0:14.2.1-3 100% | 170.8 MiB/s | 524.8 KiB | 00m00s
[ 99/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s
[100/155] Installing libverto-0:0.3.2-9 100% | 30.5 MiB/s | 31.3 KiB | 00m00s
[101/155] Installing xxhash-libs-0:0.8. 100% | 87.7 MiB/s | 89.8 KiB | 00m00s
[102/155] Installing libnghttp2-0:1.62. 100% | 163.2 MiB/s | 167.1 KiB | 00m00s
[103/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s
[104/155] Installing libbrotli-0:1.1.0- 100% | 164.0 MiB/s | 839.9 KiB | 00m00s
[105/155] Installing coreutils-common-0 100% | 219.4 MiB/s | 11.2 MiB | 00m00s
[106/155] Installing openssl-libs-1:3.2 100% | 270.0 MiB/s | 7.8 MiB | 00m00s
[107/155] Installing coreutils-0:9.5-11 100% | 132.7 MiB/s | 5.7 MiB | 00m00s
[108/155] Installing ca-certificates-0: 100% | 2.3 MiB/s | 2.4 MiB | 00m01s
[109/155] Installing krb5-libs-0:1.21.3 100% | 178.4 MiB/s | 2.3 MiB | 00m00s
[110/155] Installing libarchive-0:3.7.4 100% | 226.7 MiB/s | 928.6 KiB | 00m00s
[111/155] Installing libtirpc-0:1.3.6-1 100% | 99.8 MiB/s | 204.5 KiB | 00m00s
[112/155] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s
[113/155] Installing authselect-libs-0: 100% | 74.3 MiB/s | 837.2 KiB | 00m00s
[114/155] Installing cracklib-0:2.9.11- 100% | 30.6 MiB/s | 250.3 KiB | 00m00s
[115/155] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s
[116/155] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s
[117/155] Installing pam-0:1.6.1-6.fc41 100% | 75.1 MiB/s | 1.9 MiB | 00m00s
[118/155] Installing libssh-0:0.10.6-8. 100% | 167.8 MiB/s | 515.4 KiB | 00m00s
[119/155] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s
[120/155] Installing rpm-libs-0:4.20.0- 100% | 236.8 MiB/s | 727.4 KiB | 00m00s
[121/155] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s
[122/155] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s
[123/155] Installing openldap-0:2.6.8-5 100% | 126.6 MiB/s | 648.0 KiB | 00m00s
[124/155] Installing libcurl-0:8.9.1-2. 100% | 200.0 MiB/s | 819.2 KiB | 00m00s
[125/155] Installing elfutils-debuginfo 100% | 28.1 MiB/s | 86.3 KiB | 00m00s
[126/155] Installing binutils-0:2.43.1- 100% | 243.6 MiB/s | 27.5 MiB | 00m00s
[127/155] Installing elfutils-0:0.192-6 100% | 191.1 MiB/s | 2.7 MiB | 00m00s
[128/155] Installing gdb-minimal-0:15.2 100% | 282.4 MiB/s | 13.0 MiB | 00m00s
[129/155] Installing debugedit-0:5.1-1. 100% | 65.9 MiB/s | 202.5 KiB | 00m00s
[130/155] Installing curl-0:8.9.1-2.fc4 100% | 31.2 MiB/s | 798.6 KiB | 00m00s
[131/155] Installing rpm-0:4.20.0-1.fc4 100% | 78.3 MiB/s | 2.5 MiB | 00m00s
[132/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s
[133/155] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s
[134/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s
[135/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s
[136/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s
[137/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s
[138/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s
[139/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s
[140/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s
[141/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s
[142/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s
[143/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s
[144/155] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s
[145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s
[146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s
[147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s
[148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s
[149/155] Installing redhat-rpm-config- 100% | 61.9 MiB/s | 190.1 KiB | 00m00s
[150/155] Installing rpm-build-0:4.20.0 100% | 49.5 MiB/s | 202.8 KiB | 00m00s
[151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s
[152/155] Installing util-linux-0:2.40. 100% | 80.1 MiB/s | 3.7 MiB | 00m00s
[153/155] Installing authselect-0:1.5.0 100% | 39.5 MiB/s | 161.9 KiB | 00m00s
[154/155] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s
[155/155] Installing info-0:7.1-3.fc41. 100% | 215.1 KiB/s | 362.2 KiB | 00m02s
Warning: skipped PGP checks for 17 packages from repository: copr_base
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.3.6-3.fc41.x86_64
alternatives-1.30-1.fc41.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.x86_64
authselect-1.5.0-8.fc41.x86_64
authselect-libs-1.5.0-8.fc41.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.32-1.fc41.x86_64
binutils-2.43.1-2.fc41.x86_64
build-reproducibility-srpm-macros-0.3.6-3.fc41.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.69_v8.0.401-1.0.fc41.noarch
coreutils-9.5-11.fc41.x86_64
coreutils-common-9.5-11.fc41.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20241029-1.git8baf557.fc41.noarch
curl-8.9.1-2.fc41.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.1-1.fc41.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-8.fc41.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-12.fc41.noarch
elfutils-0.192-6.fc41.x86_64
elfutils-debuginfod-client-0.192-6.fc41.x86_64
elfutils-default-yama-scope-0.192-6.fc41.noarch
elfutils-libelf-0.192-6.fc41.x86_64
elfutils-libs-0.192-6.fc41.x86_64
fedora-gpg-keys-41-1.noarch
fedora-release-41-27.noarch
fedora-release-common-41-27.noarch
fedora-release-identity-basic-41-27.noarch
fedora-repos-41-1.noarch
file-5.45-8.fc41.x86_64
file-libs-5.45-8.fc41.x86_64
filesystem-3.18-23.fc41.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.3.2-1.fc41.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.2-3.fc41.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.1-2.fc41.noarch
glibc-2.40-11.fc41.x86_64
glibc-common-2.40-11.fc41.x86_64
glibc-gconv-extra-2.40-11.fc41.x86_64
glibc-minimal-langpack-2.40-11.fc41.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-3.fc41.noarch
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1-3.fc41.x86_64
jansson-2.13.1-10.fc41.x86_64
json-c-0.17-4.fc41.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-3.fc41.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.4-4.fc41.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc41.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.70-4.fc41.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-6.fc41.x86_64
libcurl-8.9.1-2.fc41.x86_64
libeconf-0.6.2-3.fc41.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-8.fc41.x86_64
libffi-3.4.6-3.fc41.x86_64
libgcc-14.2.1-3.fc41.x86_64
libgomp-14.2.1-3.fc41.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-8.fc41.x86_64
libnghttp2-1.62.1-2.fc41.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc41.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.7-7.fc41.x86_64
libsemanage-3.7-4.fc41.x86_64
libsepol-3.7-2.fc41.x86_64
libsmartcols-2.40.2-8.fc41.x86_64
libssh-0.10.6-8.fc41.x86_64
libssh-config-0.10.6-8.fc41.noarch
libstdc++-14.2.1-3.fc41.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.6-1.fc41.x86_64
libtool-ltdl-2.4.7-12.fc41.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.2-8.fc41.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-10.fc41.x86_64
libxml2-2.12.8-2.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.6-6.fc41.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-5.fc41.x86_64
openssl-libs-3.2.2-9.fc41.x86_64
p11-kit-0.25.5-3.fc41.x86_64
p11-kit-trust-0.25.5-3.fc41.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.6.1-6.fc41.x86_64
pam-libs-1.6.1-6.fc41.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc41.x86_64
pkgconf-m4-2.3.0-1.fc41.noarch
pkgconf-pkg-config-2.3.0-1.fc41.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.0-1.fc41.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc41.noarch
qt6-srpm-macros-6.8.0-1.fc41.noarch
readline-8.2-10.fc41.x86_64
redhat-rpm-config-293-1.fc41.noarch
rpm-4.20.0-1.fc41.x86_64
rpm-build-4.20.0-1.fc41.x86_64
rpm-build-libs-4.20.0-1.fc41.x86_64
rpm-libs-4.20.0-1.fc41.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
rust-srpm-macros-26.3-3.fc41.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.15.1-12.fc41.x86_64
sqlite-libs-3.46.1-1.fc41.x86_64
systemd-libs-256.8-1.fc41.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-64.fc41.x86_64
util-linux-2.40.2-8.fc41.x86_64
util-linux-core-2.40.2-8.fc41.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-4.fc41.x86_64
xz-5.6.2-2.fc41.x86_64
xz-libs-5.6.2-2.fc41.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-41.fc41.x86_64
zlib-ng-compat-2.1.7-3.fc41.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1732147200
Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1732210602.760077/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-s2umfzl7/morphio/morphio.spec) Config(child) 0 minutes 36 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/morphio-3.4.0-4.fc41.src.rpm) Config(fedora-41-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210602.760077/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1732210602.760077/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1732210602.760077/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.20.0-1.fc41.x86_64
rpm-sequoia-1.7.0-2.fc41.x86_64
dnf5-5.2.7.0-1.fc41.x86_64
dnf5-plugins-5.2.7.0-1.fc41.x86_64
Finish: chroot init
Start: build phase for morphio-3.4.0-4.fc41.src.rpm
Start: build setup for morphio-3.4.0-4.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1732147200
Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.src.rpm
Updating and loading repositories:
updates 100% | 1.0 MiB/s | 29.7 KiB | 00m00s
fedora 100% | 947.0 KiB/s | 27.5 KiB | 00m00s
Copr repository 100% | 32.7 KiB/s | 1.5 KiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing:
boost-devel x86_64 1.83.0-8.fc41 copr_base 143.0 MiB
catch2-devel x86_64 2.13.10-5.fc41 fedora 952.8 KiB
cmake x86_64 3.30.5-1.fc41 updates 32.5 MiB
gcc-c++ x86_64 14.2.1-3.fc41 fedora 38.2 MiB
gsl-lite-devel x86_64 0.41.0-5.fc41 fedora 308.1 KiB
gulrak-filesystem-devel x86_64 1.5.14-8.fc41 fedora 272.2 KiB
hdf5-devel x86_64 1.12.1-20.fc41 fedora 3.9 MiB
highfive-devel x86_64 2.10.0-1.fc41 fedora 377.0 KiB
lcov noarch 2.0-4.fc41 fedora 930.9 KiB
lexertl14-devel x86_64 1:0.1.0^20240506gitbca1359-2.fc41 fedora 573.7 KiB
ninja-build x86_64 1.12.1-3.fc41 fedora 432.6 KiB
pybind11-devel x86_64 2.13.6-1.fc41 copr_base 847.8 KiB
python3-devel x86_64 3.13.0-1.fc41 fedora 1.8 MiB
tomcli noarch 0.8.0-1.fc41 fedora 125.7 KiB
Installing dependencies:
abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB
annobin-docs noarch 12.69-1.fc41 fedora 97.7 KiB
annobin-plugin-gcc x86_64 12.69-1.fc41 fedora 985.0 KiB
boost x86_64 1.83.0-8.fc41 copr_base 1.3 KiB
boost-atomic x86_64 1.83.0-8.fc41 copr_base 25.0 KiB
boost-chrono x86_64 1.83.0-8.fc41 copr_base 41.6 KiB
boost-container x86_64 1.83.0-8.fc41 copr_base 69.5 KiB
boost-context x86_64 1.83.0-8.fc41 copr_base 16.5 KiB
boost-contract x86_64 1.83.0-8.fc41 copr_base 103.2 KiB
boost-coroutine x86_64 1.83.0-8.fc41 copr_base 25.1 KiB
boost-date-time x86_64 1.83.0-8.fc41 copr_base 16.3 KiB
boost-fiber x86_64 1.83.0-8.fc41 copr_base 82.8 KiB
boost-filesystem x86_64 1.83.0-8.fc41 copr_base 147.6 KiB
boost-graph x86_64 1.83.0-8.fc41 copr_base 346.3 KiB
boost-iostreams x86_64 1.83.0-8.fc41 copr_base 94.7 KiB
boost-json x86_64 1.83.0-8.fc41 copr_base 329.1 KiB
boost-locale x86_64 1.83.0-8.fc41 copr_base 606.3 KiB
boost-log x86_64 1.83.0-8.fc41 copr_base 1.5 MiB
boost-math x86_64 1.83.0-8.fc41 copr_base 662.9 KiB
boost-nowide x86_64 1.83.0-8.fc41 copr_base 24.9 KiB
boost-numpy3 x86_64 1.83.0-8.fc41 copr_base 57.6 KiB
boost-program-options x86_64 1.83.0-8.fc41 copr_base 272.7 KiB
boost-python3 x86_64 1.83.0-8.fc41 copr_base 254.4 KiB
boost-random x86_64 1.83.0-8.fc41 copr_base 33.7 KiB
boost-regex x86_64 1.83.0-8.fc41 copr_base 275.0 KiB
boost-serialization x86_64 1.83.0-8.fc41 copr_base 441.6 KiB
boost-stacktrace x86_64 1.83.0-8.fc41 copr_base 68.1 KiB
boost-system x86_64 1.83.0-8.fc41 copr_base 16.3 KiB
boost-test x86_64 1.83.0-8.fc41 copr_base 643.0 KiB
boost-thread x86_64 1.83.0-8.fc41 copr_base 136.8 KiB
boost-timer x86_64 1.83.0-8.fc41 copr_base 25.1 KiB
boost-type_erasure x86_64 1.83.0-8.fc41 copr_base 58.2 KiB
boost-wave x86_64 1.83.0-8.fc41 copr_base 639.8 KiB
cmake-data noarch 3.30.5-1.fc41 updates 8.2 MiB
cmake-filesystem x86_64 3.30.5-1.fc41 updates 0.0 B
cmake-rpm-macros noarch 3.30.5-1.fc41 updates 7.5 KiB
cpp x86_64 14.2.1-3.fc41 fedora 35.0 MiB
default-fonts-core-sans noarch 4.1-2.fc41 fedora 11.9 KiB
emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B
expat x86_64 2.6.4-1.fc41 updates 292.9 KiB
flexiblas x86_64 3.4.4-3.fc41 fedora 48.5 KiB
flexiblas-netlib x86_64 3.4.4-3.fc41 fedora 10.7 MiB
flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 fedora 43.3 KiB
fontconfig x86_64 2.15.0-8.fc41 fedora 791.9 KiB
fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B
freetype x86_64 2.13.3-1.fc41 fedora 850.5 KiB
gcc x86_64 14.2.1-3.fc41 fedora 104.3 MiB
gcc-gfortran x86_64 14.2.1-3.fc41 fedora 37.2 MiB
gcc-plugin-annobin x86_64 14.2.1-3.fc41 fedora 61.1 KiB
gd x86_64 2.3.3-17.fc41 fedora 403.7 KiB
glib2 x86_64 2.82.2-1.fc41 updates 14.7 MiB
glibc-devel x86_64 2.40-11.fc41 updates 2.3 MiB
gnutls x86_64 3.8.6-7.fc41 fedora 3.2 MiB
google-noto-fonts-common noarch 20240701-2.fc41 fedora 17.5 KiB
google-noto-sans-vf-fonts noarch 20240701-2.fc41 fedora 1.2 MiB
graphite2 x86_64 1.3.14-16.fc41 fedora 192.0 KiB
groff-base x86_64 1.23.0-7.fc41 fedora 3.8 MiB
harfbuzz x86_64 9.0.0-3.fc41 fedora 2.6 MiB
hdf5 x86_64 1.12.1-20.fc41 fedora 8.4 MiB
jbigkit-libs x86_64 2.1-30.fc41 fedora 117.6 KiB
jsoncpp x86_64 1.9.5-8.fc41 fedora 253.4 KiB
kernel-headers x86_64 6.11.3-300.fc41 fedora 6.4 MiB
libX11 x86_64 1.8.10-2.fc41 fedora 1.3 MiB
libX11-common noarch 1.8.10-2.fc41 fedora 1.1 MiB
libXau x86_64 1.0.11-7.fc41 fedora 66.9 KiB
libXpm x86_64 3.5.17-4.fc41 fedora 148.4 KiB
libaec x86_64 1.1.3-1.fc41 fedora 98.1 KiB
libaec-devel x86_64 1.1.3-1.fc41 fedora 12.5 KiB
libaom x86_64 3.9.0-3.fc41 fedora 5.1 MiB
libavif x86_64 1.0.4-7.fc41 fedora 183.8 KiB
libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB
libdav1d x86_64 1.5.0-1.fc41 updates 1.7 MiB
libgfortran x86_64 14.2.1-3.fc41 fedora 3.0 MiB
libicu x86_64 74.2-2.fc41 fedora 34.9 MiB
libicu-devel x86_64 74.2-2.fc41 fedora 5.6 MiB
libimagequant x86_64 4.0.3-5.fc41 fedora 666.7 KiB
libjpeg-turbo x86_64 3.0.2-3.fc41 fedora 776.9 KiB
liblerc x86_64 4.0.0-7.fc41 fedora 607.5 KiB
libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB
libpng x86_64 2:1.6.40-4.fc41 fedora 245.8 KiB
libquadmath x86_64 14.2.1-3.fc41 fedora 325.9 KiB
libquadmath-devel x86_64 14.2.1-3.fc41 fedora 21.9 KiB
libstdc++-devel x86_64 14.2.1-3.fc41 fedora 15.4 MiB
libtiff x86_64 4.6.0-6.fc41 fedora 606.0 KiB
libuv x86_64 1:1.49.2-1.fc41 updates 565.0 KiB
libvmaf x86_64 3.0.0-2.fc41 fedora 823.0 KiB
libwebp x86_64 1.4.0-4.fc41 fedora 822.6 KiB
libxcb x86_64 1.17.0-3.fc41 fedora 1.2 MiB
libxcrypt-devel x86_64 4.4.36-10.fc41 updates 30.5 KiB
mailcap noarch 2.1.54-7.fc41 fedora 86.0 KiB
make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB
mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB
ncurses x86_64 6.5-2.20240629.fc41 fedora 627.3 KiB
nettle x86_64 3.10-3.fc41 fedora 793.0 KiB
openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB
openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB
perl-AutoLoader noarch 5.74-512.fc41 updates 20.5 KiB
perl-B x86_64 1.89-512.fc41 updates 498.0 KiB
perl-B-Hooks-EndOfScope noarch 0.28-2.fc41 fedora 69.3 KiB
perl-Capture-Tiny noarch 0.48-21.fc41 fedora 69.9 KiB
perl-Carp noarch 1.54-511.fc41 fedora 46.6 KiB
perl-Class-Data-Inheritable noarch 0.09-9.fc41 fedora 6.3 KiB
perl-Class-Inspector noarch 1.36-17.fc41 fedora 57.5 KiB
perl-Class-Method-Modifiers noarch 2.15-5.fc41 fedora 102.5 KiB
perl-Class-Singleton noarch 1.6-12.fc41 fedora 39.7 KiB
perl-Class-Struct noarch 0.68-512.fc41 updates 25.4 KiB
perl-Clone x86_64 0.47-1.fc41 fedora 36.5 KiB
perl-Compress-Raw-Bzip2 x86_64 2.212-512.fc41 fedora 69.5 KiB
perl-Compress-Raw-Zlib x86_64 2.212-512.fc41 fedora 162.4 KiB
perl-Data-Dumper x86_64 2.189-512.fc41 fedora 111.7 KiB
perl-Data-OptList noarch 0.114-5.fc41 fedora 50.1 KiB
perl-Date-ISO8601 noarch 0.005-21.fc41 fedora 24.5 KiB
perl-DateTime x86_64 2:1.65-6.fc41 fedora 383.0 KiB
perl-DateTime-Locale noarch 1.44-1.fc41 updates 22.5 MiB
perl-DateTime-TimeZone noarch 2.63-1.fc41 fedora 6.0 MiB
perl-DateTime-TimeZone-SystemV noarch 0.010-22.fc41 fedora 28.4 KiB
perl-DateTime-TimeZone-Tzfile noarch 0.011-22.fc41 fedora 24.6 KiB
perl-Devel-CallChecker x86_64 0.009-7.fc41 fedora 37.3 KiB
perl-Devel-Caller x86_64 2.07-7.fc41 fedora 27.4 KiB
perl-Devel-LexAlias x86_64 0.05-38.fc41 fedora 19.2 KiB
perl-Devel-StackTrace noarch 1:2.05-4.fc41 fedora 48.9 KiB
perl-Digest noarch 1.20-511.fc41 fedora 35.3 KiB
perl-Digest-MD5 x86_64 2.59-5.fc41 fedora 59.8 KiB
perl-Dist-CheckConflicts noarch 0.11-31.fc41 fedora 31.7 KiB
perl-DynaLoader x86_64 1.56-512.fc41 updates 32.1 KiB
perl-DynaLoader-Functions noarch 0.004-5.fc41 fedora 19.7 KiB
perl-Encode x86_64 4:3.21-511.fc41 fedora 4.7 MiB
perl-Encode-Locale noarch 1.05-30.fc41 fedora 19.0 KiB
perl-English noarch 1.11-512.fc41 updates 6.2 KiB
perl-Errno x86_64 1.38-512.fc41 updates 8.4 KiB
perl-Eval-Closure noarch 0.14-24.fc41 fedora 33.3 KiB
perl-Exception-Class noarch 1.45-11.fc41 fedora 92.4 KiB
perl-Exporter noarch 5.78-511.fc41 fedora 54.3 KiB
perl-Fcntl x86_64 1.18-512.fc41 updates 49.0 KiB
perl-File-Basename noarch 2.86-512.fc41 updates 14.0 KiB
perl-File-Compare noarch 1.100.800-512.fc41 updates 5.6 KiB
perl-File-Copy noarch 2.41-512.fc41 updates 19.6 KiB
perl-File-Find noarch 1.44-512.fc41 updates 41.9 KiB
perl-File-Path noarch 2.18-511.fc41 fedora 63.5 KiB
perl-File-ShareDir noarch 1.118-12.fc41 fedora 56.2 KiB
perl-File-Temp noarch 1:0.231.100-511.fc41 fedora 162.3 KiB
perl-File-stat noarch 1.14-512.fc41 updates 12.5 KiB
perl-FileHandle noarch 2.05-512.fc41 updates 9.3 KiB
perl-GD x86_64 2.83-2.fc41 fedora 403.3 KiB
perl-Getopt-Long noarch 1:2.58-2.fc41 fedora 144.5 KiB
perl-Getopt-Std noarch 1.14-512.fc41 updates 11.2 KiB
perl-HTML-Parser x86_64 3.83-1.fc41 fedora 281.8 KiB
perl-HTML-Tagset noarch 3.24-2.fc41 fedora 18.7 KiB
perl-HTTP-Date noarch 6.06-5.fc41 fedora 41.2 KiB
perl-HTTP-Message noarch 6.46-2.fc41 fedora 215.3 KiB
perl-HTTP-Tiny noarch 0.090-1.fc41 updates 154.4 KiB
perl-Hash-Util-FieldHash x86_64 1.27-512.fc41 updates 66.6 KiB
perl-I18N-LangTags noarch 0.45-512.fc41 updates 82.3 KiB
perl-I18N-Langinfo x86_64 0.24-512.fc41 updates 38.8 KiB
perl-IO x86_64 1.55-512.fc41 updates 151.1 KiB
perl-IO-Compress noarch 2.212-512.fc41 fedora 1.0 MiB
perl-IO-HTML noarch 1.004-13.fc41 fedora 45.2 KiB
perl-IO-Socket-IP noarch 0.42-512.fc41 fedora 98.7 KiB
perl-IO-Socket-SSL noarch 2.089-1.fc41 fedora 703.3 KiB
perl-IPC-Open3 noarch 1.22-512.fc41 updates 22.5 KiB
perl-JSON noarch 4.10-6.fc41 fedora 270.5 KiB
perl-JSON-XS x86_64 1:4.03-15.fc41 fedora 270.3 KiB
perl-LWP-MediaTypes noarch 6.04-19.fc41 fedora 79.0 KiB
perl-Locale-Maketext noarch 1.33-512.fc41 fedora 171.3 KiB
perl-Locale-Maketext-Simple noarch 1:0.21-512.fc41 updates 12.8 KiB
perl-MIME-Base32 noarch 1.303-21.fc41 fedora 30.7 KiB
perl-MIME-Base64 x86_64 3.16-511.fc41 fedora 46.1 KiB
perl-MRO-Compat noarch 0.15-10.fc41 fedora 43.0 KiB
perl-Math-BigInt noarch 1:2.0030.03-3.fc41 fedora 957.7 KiB
perl-Math-Complex noarch 1.62-512.fc41 updates 85.0 KiB
perl-Module-CoreList noarch 1:5.20241020-1.fc41 updates 1.2 MiB
perl-Module-Implementation noarch 0.09-40.fc41 fedora 24.7 KiB
perl-Module-Load noarch 1:0.36-511.fc41 fedora 14.9 KiB
perl-Module-Load-Conditional noarch 0.74-511.fc41 fedora 28.7 KiB
perl-Module-Metadata noarch 1.000038-511.fc41 fedora 67.5 KiB
perl-Module-Runtime noarch 0.016-23.fc41 fedora 30.4 KiB
perl-Net-SSLeay x86_64 1.94-7.fc41 fedora 1.3 MiB
perl-POSIX x86_64 2.20-512.fc41 updates 235.1 KiB
perl-Package-Generator noarch 1.106-32.fc41 fedora 29.9 KiB
perl-Package-Stash noarch 0.40-8.fc41 fedora 55.9 KiB
perl-Package-Stash-XS x86_64 0.30-9.fc41 fedora 68.3 KiB
perl-PadWalker x86_64 2.5-15.fc41 fedora 45.1 KiB
perl-Params-Check noarch 1:0.38-511.fc41 fedora 27.6 KiB
perl-Params-Classify x86_64 0.015-24.fc41 fedora 47.6 KiB
perl-Params-Util x86_64 1.102-16.fc41 fedora 54.6 KiB
perl-Params-ValidationCompiler noarch 0.31-6.fc41 fedora 91.1 KiB
perl-PathTools x86_64 3.91-511.fc41 fedora 180.0 KiB
perl-Pod-Escapes noarch 1:1.07-511.fc41 fedora 24.9 KiB
perl-Pod-Html noarch 1.35-512.fc41 updates 42.2 KiB
perl-Pod-Perldoc noarch 3.28.01-512.fc41 fedora 163.7 KiB
perl-Pod-Simple noarch 1:3.45-511.fc41 fedora 560.9 KiB
perl-Pod-Usage noarch 4:2.03-511.fc41 fedora 84.8 KiB
perl-Ref-Util noarch 0.204-21.fc41 fedora 31.5 KiB
perl-Ref-Util-XS x86_64 0.117-24.fc41 fedora 42.2 KiB
perl-Role-Tiny noarch 2.002004-12.fc41 fedora 61.7 KiB
perl-Scalar-List-Utils x86_64 5:1.68-1.fc41 updates 148.9 KiB
perl-SelectSaver noarch 1.02-512.fc41 updates 2.2 KiB
perl-Socket x86_64 4:2.038-511.fc41 fedora 124.0 KiB
perl-Specio noarch 0.48-7.fc41 fedora 329.7 KiB
perl-Storable x86_64 1:3.32-511.fc41 fedora 232.4 KiB
perl-Sub-Exporter noarch 0.991-4.fc41 fedora 194.9 KiB
perl-Sub-Exporter-Progressive noarch 0.001013-25.fc41 fedora 27.3 KiB
perl-Sub-Identify x86_64 0.14-28.fc41 fedora 31.9 KiB
perl-Sub-Install noarch 0.929-6.fc41 fedora 35.9 KiB
perl-Symbol noarch 1.09-512.fc41 updates 6.8 KiB
perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB
perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB
perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB
perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB
perl-Time-HiRes x86_64 4:1.9777-511.fc41 fedora 119.9 KiB
perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB
perl-TimeDate noarch 1:2.33-15.fc41 fedora 95.2 KiB
perl-Try-Tiny noarch 0.32-1.fc41 fedora 67.3 KiB
perl-Types-Serialiser noarch 1.01-12.fc41 fedora 22.9 KiB
perl-URI noarch 5.30-1.fc41 fedora 256.9 KiB
perl-Variable-Magic x86_64 0.64-3.fc41 fedora 130.6 KiB
perl-XString x86_64 0.005-14.fc41 fedora 37.0 KiB
perl-base noarch 2.27-512.fc41 updates 12.5 KiB
perl-common-sense x86_64 3.7.5-18.fc41 fedora 47.0 KiB
perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB
perl-if noarch 0.61.000-512.fc41 updates 5.8 KiB
perl-interpreter x86_64 4:5.40.0-512.fc41 updates 122.3 KiB
perl-lib x86_64 0.65-512.fc41 updates 8.5 KiB
perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB
perl-libs x86_64 4:5.40.0-512.fc41 updates 9.9 MiB
perl-locale noarch 1.12-512.fc41 updates 6.5 KiB
perl-mro x86_64 1.29-512.fc41 updates 45.6 KiB
perl-namespace-autoclean noarch 0.29-19.fc41 fedora 41.1 KiB
perl-namespace-clean noarch 0.27-27.fc41 fedora 38.7 KiB
perl-overload noarch 1.37-512.fc41 updates 71.5 KiB
perl-overloading noarch 0.02-512.fc41 updates 4.8 KiB
perl-parent noarch 1:0.242-1.fc41 fedora 10.0 KiB
perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB
perl-vars noarch 1.05-512.fc41 updates 3.9 KiB
perl-version x86_64 9:0.99.33-1.fc41 fedora 132.8 KiB
perltidy noarch 20240903-1.fc41 fedora 3.9 MiB
pyproject-rpm-macros noarch 1.16.0-1.fc41 updates 114.4 KiB
python-pip-wheel noarch 24.3.1-1.fc41 copr_base 1.2 MiB
python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB
python3 x86_64 3.13.0-1.fc41 fedora 31.8 KiB
python3-click noarch 8.1.7-6.fc41 fedora 1.1 MiB
python3-libs x86_64 3.13.0-1.fc41 fedora 40.3 MiB
python3-numpy x86_64 1:1.26.4-8.fc41 fedora 43.8 MiB
python3-packaging noarch 24.2-2.fc41 copr_base 558.2 KiB
python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB
python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB
python3-tomlkit noarch 0.13.2-1.fc41 copr_base 453.7 KiB
rav1e-libs x86_64 0.7.1-4.fc41 fedora 3.0 MiB
rhash x86_64 1.4.4-2.fc41 fedora 349.9 KiB
svt-av1-libs x86_64 2.1.0-2.fc41 fedora 7.1 MiB
tomcli+tomlkit noarch 0.8.0-1.fc41 fedora 7.8 KiB
tzdata noarch 2024a-9.fc41 fedora 1.7 MiB
vim-filesystem noarch 2:9.1.866-1.fc41 updates 40.0 B
xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB
zlib-ng-compat-devel x86_64 2.1.7-3.fc41 fedora 106.8 KiB
Transaction Summary:
Installing: 269 packages
Total size of inbound packages is 189 MiB. Need to download 189 MiB.
After this operation, 754 MiB extra will be used (install 754 MiB, remove 0 B).
[ 1/269] tomcli-0:0.8.0-1.fc41.noarch 100% | 358.2 KiB/s | 67.3 KiB | 00m00s
[ 2/269] highfive-devel-0:2.10.0-1.fc4 100% | 441.3 KiB/s | 98.0 KiB | 00m00s
[ 3/269] lcov-0:2.0-4.fc41.noarch 100% | 857.2 KiB/s | 228.0 KiB | 00m00s
[ 4/269] catch2-devel-0:2.13.10-5.fc41 100% | 1.8 MiB/s | 204.7 KiB | 00m00s
[ 5/269] gulrak-filesystem-devel-0:1.5 100% | 963.4 KiB/s | 59.7 KiB | 00m00s
[ 6/269] gsl-lite-devel-0:0.41.0-5.fc4 100% | 1.0 MiB/s | 61.5 KiB | 00m00s
[ 7/269] boost-devel-0:1.83.0-8.fc41.x 100% | 35.3 MiB/s | 11.7 MiB | 00m00s
[ 8/269] pybind11-devel-0:2.13.6-1.fc4 100% | 1.5 MiB/s | 177.3 KiB | 00m00s
[ 9/269] cmake-0:3.30.5-1.fc41.x86_64 100% | 25.8 MiB/s | 10.8 MiB | 00m00s
[ 10/269] lexertl14-devel-1:0.1.0^20240 100% | 1.2 MiB/s | 107.0 KiB | 00m00s
[ 11/269] hdf5-devel-0:1.12.1-20.fc41.x 100% | 9.4 MiB/s | 1.3 MiB | 00m00s
[ 12/269] python3-devel-0:3.13.0-1.fc41 100% | 8.0 MiB/s | 402.5 KiB | 00m00s
[ 13/269] ninja-build-0:1.12.1-3.fc41.x 100% | 1.9 MiB/s | 180.0 KiB | 00m00s
[ 14/269] gcc-c++-0:14.2.1-3.fc41.x86_6 100% | 43.3 MiB/s | 14.2 MiB | 00m00s
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[ 16/269] perl-Carp-0:1.54-511.fc41.noa 100% | 902.9 KiB/s | 28.9 KiB | 00m00s
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[195/269] boost-stacktrace-0:1.83.0-8.f 100% | 527.1 KiB/s | 30.0 KiB | 00m00s
[196/269] boost-thread-0:1.83.0-8.fc41. 100% | 2.4 MiB/s | 61.3 KiB | 00m00s
[197/269] boost-type_erasure-0:1.83.0-8 100% | 1.5 MiB/s | 33.4 KiB | 00m00s
[198/269] boost-timer-0:1.83.0-8.fc41.x 100% | 345.9 KiB/s | 21.1 KiB | 00m00s
[199/269] boost-test-0:1.83.0-8.fc41.x8 100% | 3.2 MiB/s | 239.1 KiB | 00m00s
[200/269] python-pip-wheel-0:24.3.1-1.f 100% | 54.8 MiB/s | 1.2 MiB | 00m00s
[201/269] boost-wave-0:1.83.0-8.fc41.x8 100% | 3.1 MiB/s | 207.6 KiB | 00m00s
[202/269] perl-English-0:1.11-512.fc41. 100% | 199.2 KiB/s | 13.5 KiB | 00m00s
[203/269] perl-File-Copy-0:2.41-512.fc4 100% | 716.8 KiB/s | 20.1 KiB | 00m00s
[204/269] expat-0:2.6.4-1.fc41.x86_64 100% | 874.2 KiB/s | 114.5 KiB | 00m00s
[205/269] perl-File-Basename-0:2.86-512 100% | 203.9 KiB/s | 17.1 KiB | 00m00s
[206/269] perl-Pod-Html-0:1.35-512.fc41 100% | 1.2 MiB/s | 29.4 KiB | 00m00s
[207/269] perl-IO-0:1.55-512.fc41.x86_6 100% | 1.4 MiB/s | 81.8 KiB | 00m00s
[208/269] perl-interpreter-4:5.40.0-512 100% | 2.5 MiB/s | 72.3 KiB | 00m00s
[209/269] perl-Scalar-List-Utils-5:1.68 100% | 1.4 MiB/s | 74.2 KiB | 00m00s
[210/269] perl-Errno-0:1.38-512.fc41.x8 100% | 677.7 KiB/s | 14.9 KiB | 00m00s
[211/269] perl-vars-0:1.05-512.fc41.noa 100% | 617.0 KiB/s | 13.0 KiB | 00m00s
[212/269] perl-B-0:1.89-512.fc41.x86_64 100% | 4.2 MiB/s | 176.2 KiB | 00m00s
[213/269] perl-Encode-4:3.21-511.fc41.x 100% | 15.5 MiB/s | 1.1 MiB | 00m00s
[214/269] perl-POSIX-0:2.20-512.fc41.x8 100% | 3.8 MiB/s | 97.0 KiB | 00m00s
[215/269] perl-libs-4:5.40.0-512.fc41.x 100% | 19.8 MiB/s | 2.3 MiB | 00m00s
[216/269] perl-if-0:0.61.000-512.fc41.n 100% | 634.6 KiB/s | 14.0 KiB | 00m00s
[217/269] perl-locale-0:1.12-512.fc41.n 100% | 616.9 KiB/s | 13.6 KiB | 00m00s
[218/269] perl-base-0:2.27-512.fc41.noa 100% | 807.9 KiB/s | 16.2 KiB | 00m00s
[219/269] perl-overload-0:1.37-512.fc41 100% | 2.0 MiB/s | 45.5 KiB | 00m00s
[220/269] perl-Fcntl-0:1.18-512.fc41.x8 100% | 1.2 MiB/s | 29.8 KiB | 00m00s
[221/269] perl-FileHandle-0:2.05-512.fc 100% | 772.5 KiB/s | 15.5 KiB | 00m00s
[222/269] perl-Symbol-0:1.09-512.fc41.n 100% | 708.2 KiB/s | 14.2 KiB | 00m00s
[223/269] perl-mro-0:1.29-512.fc41.x86_ 100% | 1.2 MiB/s | 29.9 KiB | 00m00s
[224/269] perl-HTTP-Tiny-0:0.090-1.fc41 100% | 2.8 MiB/s | 56.5 KiB | 00m00s
[225/269] perl-IO-Socket-SSL-0:2.089-1. 100% | 5.9 MiB/s | 231.2 KiB | 00m00s
[226/269] perl-IPC-Open3-0:1.22-512.fc4 100% | 1.0 MiB/s | 21.8 KiB | 00m00s
[227/269] perl-Locale-Maketext-Simple-1 100% | 876.3 KiB/s | 17.5 KiB | 00m00s
[228/269] perl-Net-SSLeay-0:1.94-7.fc41 100% | 5.4 MiB/s | 375.7 KiB | 00m00s
[229/269] perl-DynaLoader-0:1.56-512.fc 100% | 1.2 MiB/s | 26.0 KiB | 00m00s
[230/269] perl-Locale-Maketext-0:1.33-5 100% | 1.9 MiB/s | 93.8 KiB | 00m00s
[231/269] perl-AutoLoader-0:5.74-512.fc 100% | 1.0 MiB/s | 21.2 KiB | 00m00s
[232/269] perl-File-Find-0:1.44-512.fc4 100% | 1.2 MiB/s | 25.3 KiB | 00m00s
[233/269] perl-Math-Complex-0:1.62-512. 100% | 2.2 MiB/s | 46.0 KiB | 00m00s
[234/269] perl-Module-CoreList-1:5.2024 100% | 2.5 MiB/s | 90.8 KiB | 00m00s
[235/269] perl-I18N-LangTags-0:0.45-512 100% | 2.2 MiB/s | 52.4 KiB | 00m00s
[236/269] perl-I18N-Langinfo-0:0.24-512 100% | 1.3 MiB/s | 25.6 KiB | 00m00s
[237/269] perl-Getopt-Std-0:1.14-512.fc 100% | 782.4 KiB/s | 15.6 KiB | 00m00s
[238/269] perl-File-Compare-0:1.100.800 100% | 660.4 KiB/s | 13.2 KiB | 00m00s
[239/269] perl-DateTime-Locale-0:1.44-1 100% | 65.4 MiB/s | 4.0 MiB | 00m00s
[240/269] perl-File-ShareDir-0:1.118-12 100% | 561.5 KiB/s | 29.8 KiB | 00m00s
[241/269] perl-Class-Inspector-0:1.36-1 100% | 574.4 KiB/s | 30.4 KiB | 00m00s
[242/269] vim-filesystem-2:9.1.866-1.fc 100% | 822.0 KiB/s | 16.4 KiB | 00m00s
[243/269] perl-Hash-Util-FieldHash-0:1. 100% | 1.7 MiB/s | 38.7 KiB | 00m00s
[244/269] openblas-0:0.3.26-5.fc41.x86_ 100% | 1.2 MiB/s | 38.7 KiB | 00m00s
[245/269] libdav1d-0:1.5.0-1.fc41.x86_6 100% | 23.4 MiB/s | 622.8 KiB | 00m00s
[246/269] perl-lib-0:0.65-512.fc41.x86_ 100% | 596.0 KiB/s | 14.9 KiB | 00m00s
[247/269] gnutls-0:3.8.6-7.fc41.x86_64 100% | 16.1 MiB/s | 1.1 MiB | 00m00s
[248/269] nettle-0:3.10-3.fc41.x86_64 100% | 5.8 MiB/s | 428.5 KiB | 00m00s
[249/269] glib2-0:2.82.2-1.fc41.x86_64 100% | 24.9 MiB/s | 3.0 MiB | 00m00s
[250/269] glibc-devel-0:2.40-11.fc41.x8 100% | 12.9 MiB/s | 633.3 KiB | 00m00s
[251/269] perl-overloading-0:0.02-512.f 100% | 642.9 KiB/s | 12.9 KiB | 00m00s
[252/269] perl-File-stat-0:1.14-512.fc4 100% | 850.1 KiB/s | 17.0 KiB | 00m00s
[253/269] perl-SelectSaver-0:1.02-512.f 100% | 614.6 KiB/s | 11.7 KiB | 00m00s
[254/269] perl-Class-Struct-0:0.68-512. 100% | 1.1 MiB/s | 22.0 KiB | 00m00s
[255/269] libxcrypt-devel-0:4.4.36-10.f 100% | 1.4 MiB/s | 28.9 KiB | 00m00s
[256/269] libstdc++-devel-0:14.2.1-3.fc 100% | 24.4 MiB/s | 2.8 MiB | 00m00s
[257/269] libuv-1:1.49.2-1.fc41.x86_64 100% | 10.7 MiB/s | 262.1 KiB | 00m00s
[258/269] tomcli+tomlkit-0:0.8.0-1.fc41 100% | 167.8 KiB/s | 8.6 KiB | 00m00s
[259/269] annobin-plugin-gcc-0:12.69-1. 100% | 16.6 MiB/s | 971.0 KiB | 00m00s
[260/269] kernel-headers-0:6.11.3-300.f 100% | 10.7 MiB/s | 1.6 MiB | 00m00s
[261/269] gcc-plugin-annobin-0:14.2.1-3 100% | 1.7 MiB/s | 55.1 KiB | 00m00s
[262/269] python3-tomlkit-0:0.13.2-1.fc 100% | 800.1 KiB/s | 112.8 KiB | 00m00s
[263/269] annobin-docs-0:12.69-1.fc41.n 100% | 2.5 MiB/s | 91.8 KiB | 00m00s
[264/269] pyproject-rpm-macros-0:1.16.0 100% | 1.7 MiB/s | 44.6 KiB | 00m00s
[265/269] python-rpm-macros-0:3.13-3.fc 100% | 569.9 KiB/s | 17.7 KiB | 00m00s
[266/269] cmake-rpm-macros-0:3.30.5-1.f 100% | 799.9 KiB/s | 16.8 KiB | 00m00s
[267/269] python3-rpm-macros-0:3.13-3.f 100% | 388.9 KiB/s | 12.4 KiB | 00m00s
[268/269] python3-packaging-0:24.2-2.fc 100% | 12.8 MiB/s | 144.0 KiB | 00m00s
[269/269] python3-rpm-generators-0:14-1 100% | 915.7 KiB/s | 29.3 KiB | 00m00s
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[269/269] Total 100% | 31.3 MiB/s | 189.1 MiB | 00m06s
Running transaction
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[ 28/271] Installing hdf5-0:1.12.1-20.f 100% | 199.8 MiB/s | 8.4 MiB | 00m00s
[ 29/271] Installing libaec-devel-0:1.1 100% | 13.2 MiB/s | 13.5 KiB | 00m00s
[ 30/271] Installing boost-json-0:1.83. 100% | 107.5 MiB/s | 330.1 KiB | 00m00s
[ 31/271] Installing boost-wave-0:1.83. 100% | 156.4 MiB/s | 640.8 KiB | 00m00s
[ 32/271] Installing pyproject-rpm-macr 100% | 56.8 MiB/s | 116.4 KiB | 00m00s
[ 33/271] Installing abattis-cantarell- 100% | 63.3 MiB/s | 194.4 KiB | 00m00s
[ 34/271] Installing boost-fiber-0:1.83 100% | 40.9 MiB/s | 83.7 KiB | 00m00s
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[ 36/271] Installing boost-coroutine-0: 100% | 25.5 MiB/s | 26.2 KiB | 00m00s
[ 37/271] Installing boost-graph-0:1.83 100% | 113.1 MiB/s | 347.3 KiB | 00m00s
[ 38/271] Installing cpp-0:14.2.1-3.fc4 100% | 191.3 MiB/s | 35.0 MiB | 00m00s
[ 39/271] Installing libicu-devel-0:74. 100% | 100.7 MiB/s | 5.6 MiB | 00m00s
[ 40/271] Installing boost-locale-0:1.8 100% | 118.6 MiB/s | 607.2 KiB | 00m00s
[ 41/271] Installing boost-type_erasure 100% | 28.9 MiB/s | 59.2 KiB | 00m00s
[ 42/271] Installing boost-timer-0:1.83 100% | 25.3 MiB/s | 25.9 KiB | 00m00s
[ 43/271] Installing zlib-ng-compat-dev 100% | 52.9 MiB/s | 108.3 KiB | 00m00s
[ 44/271] Installing annobin-docs-0:12. 100% | 48.2 MiB/s | 98.8 KiB | 00m00s
[ 45/271] Installing libuv-1:1.49.2-1.f 100% | 69.3 MiB/s | 567.8 KiB | 00m00s
[ 46/271] Installing kernel-headers-0:6 100% | 71.9 MiB/s | 6.5 MiB | 00m00s
[ 47/271] Installing libxcrypt-devel-0: 100% | 8.0 MiB/s | 32.9 KiB | 00m00s
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[ 50/271] Installing libquadmath-devel- 100% | 11.4 MiB/s | 23.4 KiB | 00m00s
[ 51/271] Installing gcc-gfortran-0:14. 100% | 250.1 MiB/s | 37.3 MiB | 00m00s
[ 52/271] Installing libstdc++-devel-0: 100% | 202.0 MiB/s | 15.6 MiB | 00m00s
[ 53/271] Installing nettle-0:3.10-3.fc 100% | 155.5 MiB/s | 796.1 KiB | 00m00s
[ 54/271] Installing gnutls-0:3.8.6-7.f 100% | 230.3 MiB/s | 3.2 MiB | 00m00s
[ 55/271] Installing glib2-0:2.82.2-1.f 100% | 237.0 MiB/s | 14.7 MiB | 00m00s
[ 56/271] Installing libdav1d-0:1.5.0-1 100% | 236.9 MiB/s | 1.7 MiB | 00m00s
[ 57/271] Installing openblas-0:0.3.26- 100% | 95.5 MiB/s | 97.8 KiB | 00m00s
[ 58/271] Installing openblas-openmp-0: 100% | 427.9 MiB/s | 39.4 MiB | 00m00s
[ 59/271] Installing flexiblas-0:3.4.4- 100% | 48.5 MiB/s | 49.7 KiB | 00m00s
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[ 61/271] Installing flexiblas-openblas 100% | 43.1 MiB/s | 44.1 KiB | 00m00s
[ 62/271] Installing python-pip-wheel-0 100% | 414.7 MiB/s | 1.2 MiB | 00m00s
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Warning: skipped PGP checks for 35 packages from repository: copr_base
Complete!
Finish: build setup for morphio-3.4.0-4.fc41.src.rpm
Start: rpmbuild morphio-3.4.0-4.fc41.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1732147200
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.M5aPu4
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ test -d /builddir/build/BUILD/morphio-3.4.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.4.0-build
+ /usr/bin/rm -rf /builddir/build/BUILD/morphio-3.4.0-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ASIrZZ
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ rm -rf MorphIO-3.4.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MorphIO-3.4.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd MorphIO-3.4.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-them-using-a-random-env-var.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/remove-upstreams-flags.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/install-python-shared-object.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Downstream-only-Allow-passing-CMake-defs-through-an-.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pytest-float32.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/use-lib_install_dir.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/allow_use_of_external_ghc_filesystem.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/dont_use_cmake_for_finding_ghc_filesystem.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/515.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/512.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ rm -rvf 3rdparty/GSL_LITE
removed directory '3rdparty/GSL_LITE'
+ sed -r -i /GSL_LITE/d MANIFEST.in
+ sed -r -i '/director.*\(.*(gsl-lite|GSL_LITE).*\)/d' 3rdparty/CMakeLists.txt
+ sed -r -i -e /TARGET_PROPERTY:gsl-lite,INTERFACE_INCLUDE_DIRECTORIES/d -e 's/PUBLIC[[:blank:]]+gsl-lite[[:blank:]]+(PRIVATE)/\1/' src/CMakeLists.txt
+ grep -ErIl '#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl[">]' .
+ xargs -r sed -r -i 's@(#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl)([">])@\1-lite\.hpp\2@'
+ rm -rvf 3rdparty/lexertl
+ ln -s /usr/include/lexertl 3rdparty/
+ find . -type f -name .gitignore -print -delete
./.gitignore
./doc/source/doxygen/.gitignore
+ tomcli set pyproject.toml lists delitem --type regex --no-first build-system.requires '^(cmake|ninja)$'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.5OqYWJ
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd MorphIO-3.4.0
+ export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt
Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt
Requirement not satisfied: h5py>=2.9.0
Handling pytest>=6.0 from requirements file tests/requirement_tests.txt
Requirement not satisfied: pytest>=6.0
Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt
Requirement satisfied: numpy>=1.14.2
(installed: numpy 1.26.4)
Exiting dependency generation pass: all requirements files
+ cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
Copr repository 100% | 46.6 KiB/s | 1.5 KiB | 00m00s
fedora 100% | 947.0 KiB/s | 27.5 KiB | 00m00s
updates 100% | 901.1 KiB/s | 29.7 KiB | 00m00s
Repositories loaded.
Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed.
Package "cmake-3.30.5-1.fc41.x86_64" is already installed.
Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed.
Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed.
Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed.
Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed.
Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed.
Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed.
Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed.
Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed.
Package "hdf5-devel-1.12.1-20.fc41.x86_64" is already installed.
Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed.
Package "lcov-2.0-4.fc41.noarch" is already installed.
Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed.
Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed.
Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed.
Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed.
Package "pyproject-rpm-macros-1.16.0-1.fc41.noarch" is already installed.
Package "python3-devel-3.13.0-1.fc41.x86_64" is already installed.
Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed.
Package "python3-packaging-24.2-2.fc41.noarch" is already installed.
Package "tomcli-0.8.0-1.fc41.noarch" is already installed.
Package Arch Version Repository Size
Installing:
python3-h5py x86_64 3.12.1-3.fc41 copr_base 4.4 MiB
python3-pip noarch 24.3.1-1.fc41 copr_base 11.4 MiB
python3-pytest noarch 8.3.3-3.fc41 copr_base 20.8 MiB
Installing dependencies:
liblzf x86_64 3.6-29.fc41 fedora 53.8 KiB
python3-cached_property noarch 2.0.1-1.fc41 copr_base 34.8 KiB
python3-iniconfig noarch 1.1.1-24.fc41 copr_base 20.6 KiB
python3-pluggy noarch 1.5.0-1.fc41 copr_base 193.2 KiB
python3-six noarch 1.16.0-24.fc41 copr_base 118.3 KiB
Transaction Summary:
Installing: 8 packages
Total size of inbound packages is 6 MiB. Need to download 6 MiB.
After this operation, 37 MiB extra will be used (install 37 MiB, remove 0 B).
[1/8] liblzf-0:3.6-29.fc41.x86_64 100% | 350.2 KiB/s | 28.0 KiB | 00m00s
[2/8] python3-pip-0:24.3.1-1.fc41.noarc 100% | 24.4 MiB/s | 2.5 MiB | 00m00s
[3/8] python3-iniconfig-0:1.1.1-24.fc41 100% | 563.8 KiB/s | 18.6 KiB | 00m00s
[4/8] python3-pytest-0:8.3.3-3.fc41.noa 100% | 31.4 MiB/s | 2.0 MiB | 00m00s
[5/8] python3-pluggy-0:1.5.0-1.fc41.noa 100% | 4.0 MiB/s | 53.7 KiB | 00m00s
[6/8] python3-six-0:1.16.0-24.fc41.noar 100% | 3.7 MiB/s | 41.8 KiB | 00m00s
[7/8] python3-h5py-0:3.12.1-3.fc41.x86_ 100% | 6.7 MiB/s | 1.1 MiB | 00m00s
[8/8] python3-cached_property-0:2.0.1-1 100% | 475.6 KiB/s | 20.5 KiB | 00m00s
--------------------------------------------------------------------------------
[8/8] Total 100% | 26.3 MiB/s | 5.8 MiB | 00m00s
Running transaction
[ 1/10] Verify package files 100% | 333.0 B/s | 8.0 B | 00m00s
[ 2/10] Prepare transaction 100% | 117.0 B/s | 8.0 B | 00m00s
[ 3/10] Installing python3-six-0:1.16.0 100% | 58.9 MiB/s | 120.7 KiB | 00m00s
[ 4/10] Installing python3-cached_prope 100% | 36.7 MiB/s | 37.6 KiB | 00m00s
[ 5/10] Installing python3-pluggy-0:1.5 100% | 64.9 MiB/s | 199.4 KiB | 00m00s
[ 6/10] Installing python3-iniconfig-0: 100% | 23.0 MiB/s | 23.6 KiB | 00m00s
[ 7/10] Installing liblzf-0:3.6-29.fc41 100% | 27.4 MiB/s | 56.2 KiB | 00m00s
[ 8/10] Installing python3-h5py-0:3.12. 100% | 194.2 MiB/s | 4.5 MiB | 00m00s
[ 9/10] Installing python3-pytest-0:8.3 100% | 249.8 MiB/s | 21.0 MiB | 00m00s
[10/10] Installing python3-pip-0:24.3.1 100% | 89.8 MiB/s | 11.7 MiB | 00m00s
Warning: skipped PGP checks for 7 packages from repository: copr_base
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1732147200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.N68TuB
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd MorphIO-3.4.0
+ export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt
Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt
Requirement satisfied: h5py>=2.9.0
(installed: h5py 3.12.1)
Handling pytest>=6.0 from requirements file tests/requirement_tests.txt
Requirement satisfied: pytest>=6.0
(installed: pytest 8.3.3)
Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt
Requirement satisfied: numpy>=1.14.2
(installed: numpy 1.26.4)
Handling setuptools>=24.2.0 from build-system.requires
Requirement not satisfied: setuptools>=24.2.0
Handling wheel from build-system.requires
Requirement not satisfied: wheel
Handling setuptools >= 40.8 from default build backend
Requirement not satisfied: setuptools >= 40.8
Handling wheel from default build backend
Requirement not satisfied: wheel
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
Copr repository 100% | 49.6 KiB/s | 1.5 KiB | 00m00s
updates 100% | 1.1 MiB/s | 29.7 KiB | 00m00s
fedora 100% | 858.2 KiB/s | 27.5 KiB | 00m00s
Repositories loaded.
Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed.
Package "cmake-3.30.5-1.fc41.x86_64" is already installed.
Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed.
Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed.
Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed.
Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed.
Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed.
Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed.
Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed.
Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed.
Package "hdf5-devel-1.12.1-20.fc41.x86_64" is already installed.
Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed.
Package "lcov-2.0-4.fc41.noarch" is already installed.
Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed.
Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed.
Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed.
Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed.
Package "pyproject-rpm-macros-1.16.0-1.fc41.noarch" is already installed.
Package "python3-devel-3.13.0-1.fc41.x86_64" is already installed.
Package "python3-h5py-3.12.1-3.fc41.x86_64" is already installed.
Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed.
Package "python3-packaging-24.2-2.fc41.noarch" is already installed.
Package "python3-pip-24.3.1-1.fc41.noarch" is already installed.
Package "python3-pytest-8.3.3-3.fc41.noarch" is already installed.
Package "tomcli-0.8.0-1.fc41.noarch" is already installed.
Package Arch Version Repository Size
Installing:
python3-setuptools noarch 74.1.3-4.fc41 copr_base 8.4 MiB
python3-wheel noarch 1:0.44.0-2.fc41 copr_base 523.8 KiB
Transaction Summary:
Installing: 2 packages
Total size of inbound packages is 2 MiB. Need to download 2 MiB.
After this operation, 9 MiB extra will be used (install 9 MiB, remove 0 B).
[1/2] python3-wheel-1:0.44.0-2.fc41.noa 100% | 2.7 MiB/s | 154.1 KiB | 00m00s
[2/2] python3-setuptools-0:74.1.3-4.fc4 100% | 23.8 MiB/s | 1.8 MiB | 00m00s
--------------------------------------------------------------------------------
[2/2] Total 100% | 25.8 MiB/s | 2.0 MiB | 00m00s
Running transaction
[1/4] Verify package files 100% | 250.0 B/s | 2.0 B | 00m00s
[2/4] Prepare transaction 100% | 66.0 B/s | 2.0 B | 00m00s
[3/4] Installing python3-wheel-1:0.44.0 100% | 53.1 MiB/s | 543.4 KiB | 00m00s
[4/4] Installing python3-setuptools-0:7 100% | 78.9 MiB/s | 8.6 MiB | 00m00s
Warning: skipped PGP checks for 2 packages from repository: copr_base
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1732147200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.OB2j04
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd MorphIO-3.4.0
+ export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt
Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt
Requirement satisfied: h5py>=2.9.0
(installed: h5py 3.12.1)
Handling pytest>=6.0 from requirements file tests/requirement_tests.txt
Requirement satisfied: pytest>=6.0
(installed: pytest 8.3.3)
Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt
Requirement satisfied: numpy>=1.14.2
(installed: numpy 1.26.4)
Handling setuptools>=24.2.0 from build-system.requires
Requirement satisfied: setuptools>=24.2.0
(installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement satisfied: wheel
(installed: wheel 0.44.0)
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
(installed: setuptools 74.1.3)
Handling wheel from default build backend
Requirement satisfied: wheel
(installed: wheel 0.44.0)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement not satisfied: setuptools_scm
Exiting dependency generation pass: get_requires_for_build_wheel
+ cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
fedora 100% | 947.0 KiB/s | 27.5 KiB | 00m00s
Copr repository 100% | 51.2 KiB/s | 1.5 KiB | 00m00s
updates 100% | 1.1 MiB/s | 29.7 KiB | 00m00s
Repositories loaded.
Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed.
Package "cmake-3.30.5-1.fc41.x86_64" is already installed.
Package Arch Version Repository Size
Installing:
python3-setuptools_scm noarch 8.1.0-1.fc41 copr_base 320.0 KiB
Transaction Summary:
Installing: 1 package
Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed.
Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed.
Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed.
Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed.
Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed.
Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed.
Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed.
Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed.
Package "hdf5-devel-1.12.1-20.fc41.x86_64" is already installed.
Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed.
Package "lcov-2.0-4.fc41.noarch" is already installed.
Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed.
Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed.
Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed.
Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed.
Package "pyproject-rpm-macros-1.16.0-1.fc41.noarch" is already installed.
Package "python3-devel-3.13.0-1.fc41.x86_64" is already installed.
Package "python3-h5py-3.12.1-3.fc41.x86_64" is already installed.
Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed.
Package "python3-packaging-24.2-2.fc41.noarch" is already installed.
Package "python3-pip-24.3.1-1.fc41.noarch" is already installed.
Package "python3-pytest-8.3.3-3.fc41.noarch" is already installed.
Package "python3-setuptools-74.1.3-4.fc41.noarch" is already installed.
Package "python3-setuptools-74.1.3-4.fc41.noarch" is already installed.
Package "python3-wheel-1:0.44.0-2.fc41.noarch" is already installed.
Package "tomcli-0.8.0-1.fc41.noarch" is already installed.
Total size of inbound packages is 102 KiB. Need to download 102 KiB.
After this operation, 320 KiB extra will be used (install 320 KiB, remove 0 B).
[1/1] python3-setuptools_scm-0:8.1.0-1. 100% | 2.4 MiB/s | 102.0 KiB | 00m00s
--------------------------------------------------------------------------------
[1/1] Total 100% | 2.3 MiB/s | 102.0 KiB | 00m00s
Running transaction
[1/3] Verify package files 100% | 0.0 B/s | 1.0 B | 00m00s
[2/3] Prepare transaction 100% | 40.0 B/s | 1.0 B | 00m00s
[3/3] Installing python3-setuptools_scm 100% | 7.7 MiB/s | 339.7 KiB | 00m00s
Warning: skipped PGP checks for 1 package from repository: copr_base
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1732147200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.k8Be4x
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd MorphIO-3.4.0
+ export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt
Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt
Requirement satisfied: h5py>=2.9.0
(installed: h5py 3.12.1)
Handling pytest>=6.0 from requirements file tests/requirement_tests.txt
Requirement satisfied: pytest>=6.0
(installed: pytest 8.3.3)
Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt
Requirement satisfied: numpy>=1.14.2
(installed: numpy 1.26.4)
Handling setuptools>=24.2.0 from build-system.requires
Requirement satisfied: setuptools>=24.2.0
(installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement satisfied: wheel
(installed: wheel 0.44.0)
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
(installed: setuptools 74.1.3)
Handling wheel from default build backend
Requirement satisfied: wheel
(installed: wheel 0.44.0)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement satisfied: setuptools_scm
(installed: setuptools_scm 8.1.0)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
section = defn.get("tool", {})[tool_name]
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
KeyError: 'setuptools_scm'
running dist_info
creating morphio.egg-info
writing morphio.egg-info/PKG-INFO
writing dependency_links to morphio.egg-info/dependency_links.txt
writing requirements to morphio.egg-info/requires.txt
writing top-level names to morphio.egg-info/top_level.txt
writing manifest file 'morphio.egg-info/SOURCES.txt'
reading manifest file 'morphio.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '3rdparty/HighFive/CMakeLists.txt'
warning: no files found matching '*' under directory '3rdparty/HighFive/include'
warning: no files found matching '*' under directory '3rdparty/HighFive/CMake'
warning: no files found matching '*' under directory '3rdparty/HighFive/doc'
warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt'
warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl'
warning: no files found matching '*' under directory 'binds/python/pybind11/include'
warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools'
warning: no files found matching 'binds/python/pybind11/CMakeLists.txt'
warning: no files found matching 'binds/python/pybind11/LICENSE'
no previously-included directories found matching 'ci'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'scripts'
no previously-included directories found matching 'examples'
adding license file 'LICENSE.txt'
adding license file 'AUTHORS.txt'
writing manifest file 'morphio.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/morphio-3.4.0.dist-info'
Handling numpy>=1.14.1 from hook generated metadata: Requires-Dist (morphio)
Requirement satisfied: numpy>=1.14.1
(installed: numpy 1.26.4)
Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (morphio)
Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs"
+ cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires
+ rm -rfv morphio-3.4.0.dist-info/
removed 'morphio-3.4.0.dist-info/top_level.txt'
removed 'morphio-3.4.0.dist-info/METADATA'
removed 'morphio-3.4.0.dist-info/LICENSE.txt'
removed 'morphio-3.4.0.dist-info/AUTHORS.txt'
removed directory 'morphio-3.4.0.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
Updating and loading repositories:
fedora 100% | 980.9 KiB/s | 27.5 KiB | 00m00s
Copr repository 100% | 27.4 KiB/s | 1.5 KiB | 00m00s
updates 100% | 1.0 MiB/s | 29.7 KiB | 00m00s
Repositories loaded.
Package "boost-devel-1.83.0-8.fc41.x86_64" is already installed.
Package "cmake-3.30.5-1.fc41.x86_64" is already installed.
Package "catch2-devel-2.13.10-5.fc41.x86_64" is already installed.
Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed.
Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed.
Nothing to do.
Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed.
Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed.
Package "gcc-c++-14.2.1-3.fc41.x86_64" is already installed.
Package "gsl-lite-devel-0.41.0-5.fc41.x86_64" is already installed.
Package "gulrak-filesystem-devel-1.5.14-8.fc41.x86_64" is already installed.
Package "hdf5-devel-1.12.1-20.fc41.x86_64" is already installed.
Package "highfive-devel-2.10.0-1.fc41.x86_64" is already installed.
Package "lcov-2.0-4.fc41.noarch" is already installed.
Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed.
Package "lexertl14-devel-1:0.1.0^20240506gitbca1359-2.fc41.x86_64" is already installed.
Package "ninja-build-1.12.1-3.fc41.x86_64" is already installed.
Package "pybind11-devel-2.13.6-1.fc41.x86_64" is already installed.
Package "pyproject-rpm-macros-1.16.0-1.fc41.noarch" is already installed.
Package "python3-devel-3.13.0-1.fc41.x86_64" is already installed.
Package "python3-h5py-3.12.1-3.fc41.x86_64" is already installed.
Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed.
Package "python3-numpy-1:1.26.4-8.fc41.x86_64" is already installed.
Package "python3-packaging-24.2-2.fc41.noarch" is already installed.
Package "python3-pip-24.3.1-1.fc41.noarch" is already installed.
Package "python3-pytest-8.3.3-3.fc41.noarch" is already installed.
Package "python3-setuptools-74.1.3-4.fc41.noarch" is already installed.
Package "python3-setuptools-74.1.3-4.fc41.noarch" is already installed.
Package "python3-setuptools_scm-8.1.0-1.fc41.noarch" is already installed.
Package "python3-wheel-1:0.44.0-2.fc41.noarch" is already installed.
Package "tomcli-0.8.0-1.fc41.noarch" is already installed.
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1732147200
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2gRwWy
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd MorphIO-3.4.0
+ export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(packaging)'
+ echo 'python3dist(pip) >= 19'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ RPM_TOXENV=py313
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires tests/requirement_tests.txt
Handling h5py>=2.9.0 from requirements file tests/requirement_tests.txt
Requirement satisfied: h5py>=2.9.0
(installed: h5py 3.12.1)
Handling pytest>=6.0 from requirements file tests/requirement_tests.txt
Requirement satisfied: pytest>=6.0
(installed: pytest 8.3.3)
Handling numpy>=1.14.2 from requirements file tests/requirement_tests.txt
Requirement satisfied: numpy>=1.14.2
(installed: numpy 1.26.4)
Handling setuptools>=24.2.0 from build-system.requires
Requirement satisfied: setuptools>=24.2.0
(installed: setuptools 74.1.3)
Handling wheel from build-system.requires
Requirement satisfied: wheel
(installed: wheel 0.44.0)
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
(installed: setuptools 74.1.3)
Handling wheel from default build backend
Requirement satisfied: wheel
(installed: wheel 0.44.0)
Handling setuptools_scm from get_requires_for_build_wheel
Requirement satisfied: setuptools_scm
(installed: setuptools_scm 8.1.0)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
section = defn.get("tool", {})[tool_name]
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
KeyError: 'setuptools_scm'
running dist_info
writing morphio.egg-info/PKG-INFO
writing dependency_links to morphio.egg-info/dependency_links.txt
writing requirements to morphio.egg-info/requires.txt
writing top-level names to morphio.egg-info/top_level.txt
reading manifest file 'morphio.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '3rdparty/HighFive/CMakeLists.txt'
warning: no files found matching '*' under directory '3rdparty/HighFive/include'
warning: no files found matching '*' under directory '3rdparty/HighFive/CMake'
warning: no files found matching '*' under directory '3rdparty/HighFive/doc'
warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt'
warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl'
warning: no files found matching '*' under directory 'binds/python/pybind11/include'
warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools'
warning: no files found matching 'binds/python/pybind11/CMakeLists.txt'
warning: no files found matching 'binds/python/pybind11/LICENSE'
no previously-included directories found matching 'ci'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'scripts'
no previously-included directories found matching 'examples'
adding license file 'LICENSE.txt'
adding license file 'AUTHORS.txt'
writing manifest file 'morphio.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/morphio-3.4.0.dist-info'
Handling numpy>=1.14.1 from hook generated metadata: Requires-Dist (morphio)
Requirement satisfied: numpy>=1.14.1
(installed: numpy 1.26.4)
Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (morphio)
Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs"
+ cat /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-buildrequires
+ rm -rfv morphio-3.4.0.dist-info/
removed 'morphio-3.4.0.dist-info/top_level.txt'
removed 'morphio-3.4.0.dist-info/METADATA'
removed 'morphio-3.4.0.dist-info/LICENSE.txt'
removed 'morphio-3.4.0.dist-info/AUTHORS.txt'
removed directory 'morphio-3.4.0.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dakIT6
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd MorphIO-3.4.0
+ export SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ SETUPTOOLS_SCM_PRETEND_VERSION=3.4.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_BINDINGS:BOOL=FALSE -DEXTERNAL_CATCH2:BOOL=TRUE -DEXTERNAL_GHC_FILESYSTEM:BOOL=TRUE -DEXTERNAL_HIGHFIVE:BOOL=TRUE -DEXTERNAL_PYBIND11:BOOL=TRUE -DMORPHIO_ENABLE_COVERAGE:BOOL=TRUE -DMORPHIO_TESTS:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DMORPHIO_VERSION_STRING:STRING=3.4.0 -DMorphIO_CXX_WARNINGS:BOOL=FALSE -GNinja -Wno-dev
-- The C compiler identification is GNU 14.2.1
-- The CXX compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
Floating Point Type: double
-- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO)
-- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1")
-- Found Boost: /usr/include (found version "1.83.0") found components: system serialization
-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7")
-- Found PythonLibs: /usr/lib64/libpython3.13.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.13.6")
-- Performing Test HAVE_fprofile_abs_path
-- Performing Test HAVE_fprofile_abs_path - Success
CMake Warning at CMake/CodeCoverage.cmake:206 (message):
Code coverage results with an optimised (non-Debug) build may be misleading
Call Stack (most recent call first):
src/CMakeLists.txt:85 (include)
CMake Warning at CMake/CodeCoverage.cmake:206 (message):
Code coverage results with an optimised (non-Debug) build may be misleading
Call Stack (most recent call first):
tests/CMakeLists.txt:43 (include)
-- Configuring done (1.5s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS_RELEASE
CMAKE_C_FLAGS_RELEASE
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
INCLUDE_INSTALL_DIR
LIB_SUFFIX
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build
+ /usr/bin/cmake --build redhat-linux-build -j2 --verbose
Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build'
Run Build Command(s): /usr/bin/ninja-build -v -j 2
[1/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -MF src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/dendritic_spine.cpp
[2/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/endoplasmic_reticulum.cpp
[3/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/enums.cpp
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[5/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/collection.cpp.o -MF src/CMakeFiles/morphio_obj.dir/collection.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/collection.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/collection.cpp
[6/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -MF src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/glial_cell.cpp
[7/55] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o -MF src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/error_message_generation.cpp
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[52/55] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o -MF tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests/test_swc_reader.cpp
[53/55] /usr/bin/cmake -E cmake_symlink_library src/libmorphio.so.0.0.0 src/libmorphio.so.0.0.0 src/libmorphio.so && :
[54/55] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -MF tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests/test_vasculature_morphology.cpp
[55/55] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic tests/CMakeFiles/unittests.dir/main.cpp.o tests/CMakeFiles/unittests.dir/test_collection.cpp.o tests/CMakeFiles/unittests.dir/test_enums.cpp.o tests/CMakeFiles/unittests.dir/test_immutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_mitochondria.cpp.o tests/CMakeFiles/unittests.dir/test_morphology_readers.cpp.o tests/CMakeFiles/unittests.dir/test_mutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_point_utils.cpp.o tests/CMakeFiles/unittests.dir/test_properties.cpp.o tests/CMakeFiles/unittests.dir/test_soma.cpp.o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o tests/CMakeFiles/unittests.dir/test_utilities.cpp.o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -o /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/bin/unittests src/libmorphio_static.a -lstdc++fs -lhdf5 -lgcov && :
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON
+ mcd=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON,CMAKE_INSTALL_DO_STRIP:BOOL=OFF
+ export MORPHIO_CMAKE_DEFS=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON,CMAKE_INSTALL_DO_STRIP:BOOL=OFF
+ MORPHIO_CMAKE_DEFS=EXTERNAL_GHC_FILESYSTEM:BOOL=TRUE,MORPHIO_USE_DOUBLE:BOOL=TRUE,MorphIO_CXX_WARNINGS:BOOL=FALSE,EXTERNAL_HIGHFIVE:BOOL=TRUE,EXTERNAL_PYBIND11:BOOL=TRUE,CMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG,CMAKE_VERBOSE_MAKEFILE:BOOL=ON,CMAKE_INSTALL_DO_STRIP:BOOL=OFF
+ mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ VALAFLAGS=-g
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ CC=gcc
+ CXX=g++
+ TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir
Processing /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0
Preparing metadata (pyproject.toml): started
Running command Preparing metadata (pyproject.toml)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
section = defn.get("tool", {})[tool_name]
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
KeyError: 'setuptools_scm'
running dist_info
creating /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info
writing /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/PKG-INFO
writing dependency_links to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/dependency_links.txt
writing requirements to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/requires.txt
writing top-level names to /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/top_level.txt
writing manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/SOURCES.txt'
reading manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '3rdparty/HighFive/CMakeLists.txt'
warning: no files found matching '*' under directory '3rdparty/HighFive/include'
warning: no files found matching '*' under directory '3rdparty/HighFive/CMake'
warning: no files found matching '*' under directory '3rdparty/HighFive/doc'
warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt'
warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl'
warning: no files found matching '*' under directory 'binds/python/pybind11/include'
warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools'
warning: no files found matching 'binds/python/pybind11/CMakeLists.txt'
warning: no files found matching 'binds/python/pybind11/LICENSE'
no previously-included directories found matching 'ci'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'scripts'
no previously-included directories found matching 'examples'
adding license file 'LICENSE.txt'
adding license file 'AUTHORS.txt'
writing manifest file '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-modern-metadata-8xzdpwh0/morphio-3.4.0.dist-info'
Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: morphio
Building wheel for morphio (pyproject.toml): started
Running command Building wheel for morphio (pyproject.toml)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
section = defn.get("tool", {})[tool_name]
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^
KeyError: 'setuptools_scm'
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-313
creating build/lib.linux-x86_64-cpython-313/morphio
copying morphio/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio
creating build/lib.linux-x86_64-cpython-313/morphio/mut
copying morphio/mut/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio/mut
creating build/lib.linux-x86_64-cpython-313/morphio/vasculature
copying morphio/vasculature/__init__.py -> build/lib.linux-x86_64-cpython-313/morphio/vasculature
running build_ext
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 14.2.1
-- The CXX compiler identification is GNU 14.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
Floating Point Type: double
-- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO)
-- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1")
CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
Call Stack (most recent call first):
/usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include)
CMakeLists.txt:42 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/include (found version "1.83.0") found components: system serialization
CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning, or
preferably upgrade to using FindPython, either by calling it explicitly
before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11.
Call Stack (most recent call first):
/usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package)
/usr/share/cmake/pybind11/pybind11Common.cmake:228 (include)
/usr/share/cmake/pybind11/pybind11Config.cmake:250 (include)
CMakeLists.txt:45 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7")
-- Found PythonLibs: /usr/lib64/libpython3.13.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.13.6")
-- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets
-- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter
-- Configuring done (1.6s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_C_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
HIGHFIVE_EXAMPLES
HIGHFIVE_UNIT_TESTS
-- Build files have been written to: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313
Change Dir: '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313'
Run Build Command(s): /usr/bin/ninja-build -v _morphio
[1/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/endoplasmic_reticulum.cpp
[2/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/enums.cpp.o -MF src/CMakeFiles/morphio_obj.dir/enums.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/enums.cpp
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[35/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/version.cpp.o -MF src/CMakeFiles/morphio_obj.dir/version.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/version.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/version.cpp
[36/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/vasc/section.cpp.o -MF src/CMakeFiles/morphio_obj.dir/vasc/section.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/vasc/section.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/vasc/section.cpp
[37/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/warning_handling.cpp.o -MF src/CMakeFiles/morphio_obj.dir/warning_handling.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/warning_handling.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/warning_handling.cpp
[38/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0 -I/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/../include -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++14 -fPIC -MD -MT src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o -MF src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/src/vasc/vasculature.cpp
[39/48] : && /usr/bin/cmake -E rm -f src/libmorphio_static.a && /usr/bin/ar qc src/libmorphio_static.a src/CMakeFiles/morphio_obj.dir/collection.cpp.o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o src/CMakeFiles/morphio_obj.dir/enums.cpp.o src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o src/CMakeFiles/morphio_obj.dir/morphology.cpp.o src/CMakeFiles/morphio_obj.dir/mut/dendritic_spine.cpp.o src/CMakeFiles/morphio_obj.dir/mut/endoplasmic_reticulum.cpp.o src/CMakeFiles/morphio_obj.dir/mut/glial_cell.cpp.o src/CMakeFiles/morphio_obj.dir/mut/mito_section.cpp.o src/CMakeFiles/morphio_obj.dir/mut/mitochondria.cpp.o src/CMakeFiles/morphio_obj.dir/mut/modifiers.cpp.o src/CMakeFiles/morphio_obj.dir/mut/morphology.cpp.o src/CMakeFiles/morphio_obj.dir/mut/section.cpp.o src/CMakeFiles/morphio_obj.dir/mut/soma.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_asc.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_hdf5.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_swc.cpp.o src/CMakeFiles/morphio_obj.dir/mut/writer_utils.cpp.o src/CMakeFiles/morphio_obj.dir/point_utils.cpp.o src/CMakeFiles/morphio_obj.dir/properties.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologyASC.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologyHDF5.cpp.o src/CMakeFiles/morphio_obj.dir/readers/morphologySWC.cpp.o src/CMakeFiles/morphio_obj.dir/readers/utils.cpp.o src/CMakeFiles/morphio_obj.dir/readers/vasculatureHDF5.cpp.o src/CMakeFiles/morphio_obj.dir/section.cpp.o src/CMakeFiles/morphio_obj.dir/shared_utils.cpp.o src/CMakeFiles/morphio_obj.dir/soma.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/properties.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/section.cpp.o src/CMakeFiles/morphio_obj.dir/vasc/vasculature.cpp.o src/CMakeFiles/morphio_obj.dir/version.cpp.o src/CMakeFiles/morphio_obj.dir/warning_handling.cpp.o && /usr/bin/ranlib src/libmorphio_static.a && :
[40/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/morphio.cpp
[41/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_enums.cpp
[42/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_immutable.cpp
[43/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_misc.cpp
[44/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_vasculature.cpp
[45/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_mutable.cpp
[46/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bind_warnings_exceptions.cpp
[47/48] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -D_morphio_EXPORTS -isystem /usr/include/python3.13 -isystem /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o -MF binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o.d -o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o -c /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/binds/python/bindings_utils.cpp
[48/48] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -flto -shared -o /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o src/libmorphio_static.a -lhdf5 && cd /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/temp.linux-x86_64-cpython-313/binds/python && /usr/bin/strip /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/morphio
copying build/lib.linux-x86_64-cpython-313/morphio/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio
creating build/bdist.linux-x86_64/wheel/morphio/mut
copying build/lib.linux-x86_64-cpython-313/morphio/mut/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio/mut
creating build/bdist.linux-x86_64/wheel/morphio/vasculature
copying build/lib.linux-x86_64-cpython-313/morphio/vasculature/__init__.py -> build/bdist.linux-x86_64/wheel/./morphio/vasculature
copying build/lib.linux-x86_64-cpython-313/morphio/_morphio.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./morphio
running install_egg_info
running egg_info
writing morphio.egg-info/PKG-INFO
writing dependency_links to morphio.egg-info/dependency_links.txt
writing requirements to morphio.egg-info/requires.txt
writing top-level names to morphio.egg-info/top_level.txt
reading manifest file 'morphio.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '3rdparty/HighFive/CMakeLists.txt'
warning: no files found matching '*' under directory '3rdparty/HighFive/include'
warning: no files found matching '*' under directory '3rdparty/HighFive/CMake'
warning: no files found matching '*' under directory '3rdparty/HighFive/doc'
warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt'
warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl'
warning: no files found matching '*' under directory 'binds/python/pybind11/include'
warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools'
warning: no files found matching 'binds/python/pybind11/CMakeLists.txt'
warning: no files found matching 'binds/python/pybind11/LICENSE'
no previously-included directories found matching 'ci'
no previously-included directories found matching 'doc'
no previously-included directories found matching 'scripts'
no previously-included directories found matching 'examples'
adding license file 'LICENSE.txt'
adding license file 'AUTHORS.txt'
writing manifest file 'morphio.egg-info/SOURCES.txt'
Copying morphio.egg-info to build/bdist.linux-x86_64/wheel/./morphio-3.4.0-py3.13.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/morphio-3.4.0.dist-info/WHEEL
creating '/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir/pip-wheel-dobs4729/.tmp-km65vn84/morphio-3.4.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'morphio/__init__.py'
adding 'morphio/_morphio.cpython-313-x86_64-linux-gnu.so'
adding 'morphio/mut/__init__.py'
adding 'morphio/vasculature/__init__.py'
adding 'morphio-3.4.0.dist-info/AUTHORS.txt'
adding 'morphio-3.4.0.dist-info/LICENSE.txt'
adding 'morphio-3.4.0.dist-info/METADATA'
adding 'morphio-3.4.0.dist-info/WHEEL'
adding 'morphio-3.4.0.dist-info/top_level.txt'
adding 'morphio-3.4.0.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Building wheel for morphio (pyproject.toml): finished with status 'done'
Created wheel for morphio: filename=morphio-3.4.0-cp313-cp313-linux_x86_64.whl size=772091 sha256=e155ca75667967c72b0a855da36f9587ed5e33ec10c6ad370e3fcf568050ea00
Stored in directory: /builddir/.cache/pip/wheels/ee/c3/10/370becb4d63347b21ed8b192db03b5bd7c455f6dcc44ad4816
Successfully built morphio
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Drjn2P
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT
++ dirname /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/morphio-3.4.0-build
+ mkdir /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd MorphIO-3.4.0
+ DESTDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT
+ /usr/bin/cmake --install redhat-linux-build
-- Install configuration: ""
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/collection.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/dendritic_spine.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/endoplasmic_reticulum.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/enums.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/errorMessages.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/exceptions.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/glial_cell.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mito_section.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mitochondria.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/morphology.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/dendritic_spine.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/endoplasmic_reticulum.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/glial_cell.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mito_section.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/mitochondria.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/modifiers.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/morphology.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/section.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/soma.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/mut/writers.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/properties.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_base.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/section_iterators.hpp
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/soma.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/types.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/iterators.hpp
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/properties.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/section.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vasc/vasculature.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/vector_types.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/version.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/include/morphio/warning_handling.h
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets.cmake
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets-noconfig.cmake
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOConfig.cmake
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so.0.0.0
-- Installing: /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/libmorphio.so
++ ls /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir/morphio-3.4.0-cp313-cp313-linux_x86_64.whl
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
++ xargs basename --multiple
+ specifier=morphio==3.4.0
+ '[' -z morphio==3.4.0 ']'
+ TMPDIR=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir morphio==3.4.0
Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13)
Looking in links: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/pyproject-wheeldir
Processing ./pyproject-wheeldir/morphio-3.4.0-cp313-cp313-linux_x86_64.whl
Installing collected packages: morphio
Successfully installed morphio-3.4.0
+ '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/bin ']'
+ rm -f /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages ']'
+ '[' -d /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages ']'
+ site_dirs+=("/usr/lib64/python3.13/site-packages")
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT$site_dir/*.dist-info
+ echo '%ghost /usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --record /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD --output /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD
removed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/RECORD'
+ rm -fv /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/REQUESTED
removed '/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.4.0.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_FILES_ESCAPE=4.19
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-files --output-modules /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/morphio-3.4.0-build/morphio-3.4.0-4.fc41.x86_64-pyproject-record --prefix /usr -l morphio
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.4.0-4.fc41 --unique-debug-suffix -3.4.0-4.fc41.x86_64 --unique-debug-src-base morphio-3.4.0-4.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0
find-debuginfo: starting
Extracting debug info from 1 files
DWARF-compressing 1 files
sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/morphio-3.4.0-4.fc41.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT
/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
Scanned 34 directories and 136 files,
processed 3 inodes,
3 modified (0 replaced + 3 rewritten),
0 unsupported format, 0 errors
Reading /builddir/build/BUILD/morphio-3.4.0-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.tRkecX
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd MorphIO-3.4.0
+ /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 -VV
Internal ctest changing into directory: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build
UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/DartConfiguration.tcl
UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build/DartConfiguration.tcl
Test project /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/redhat-linux-build
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: unittests
1: Test command: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/bin/unittests
1: Working Directory: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/tests
1: Test timeout computed to be: 10000000
1:
1: $STRING$:2:warning
1: Warning: found a disconnected neurite.
1: Neurites are not supposed to have parentId: -1
1: (although this is normal if this neuron has no soma)
1:
1: $STRING$:2:warning
1: Warning: found a disconnected neurite.
1: Neurites are not supposed to have parentId: -1
1: (although this is normal if this neuron has no soma)
1:
1: $STRING$:2:warning
1: Warning: found a disconnected neurite.
1: Neurites are not supposed to have parentId: -1
1: (although this is normal if this neuron has no soma)
1:
1: $STRING$:2:warning
1: Warning: found a disconnected neurite.
1: Neurites are not supposed to have parentId: -1
1: (although this is normal if this neuron has no soma)
1:
1: $STRING$:4:warning
1: Warning: found a disconnected neurite.
1: Neurites are not supposed to have parentId: -1
1: (although this is normal if this neuron has no soma)
1:
1: $STRING$:0:warning
1: Warning: no soma found in file
1:
1: $STRING$:3:warning
1: Warning: Type changed within section, without bifurcation
1:
1: $STRING$:4:warning
1: Warning: Type changed within section, without bifurcation
1:
1: $STRING$:5:warning
1: Warning: Type changed within section, without bifurcation
1:
1: data/single_point_root.asc:0:warning
1: Warning: no soma found in file
1:
1: Warning: section 1 is the only child of section: 0
1: It will be merged with the parent section
1:
1: Warning: section 2 is the only child of section: 0
1: It will be merged with the parent section
1:
1: Warning: section 3 is the only child of section: 0
1: It will be merged with the parent section
1:
1: Warning: Skipping an attempt to write an empty morphology.
1:
1: Warning: writing file without a soma
1:
1: Warning: writing soma set to SOMA_UNDEFINED
1:
1: Soma must be stacked cylinders or a point: see https://github.com/BlueBrain/MorphIO/issues/457
1:
1: Three Point Soma: Only one column has the same coordinates.
1:
1: data/h5/v1/Neuron-no-soma.h5:0:warning
1: Warning: no soma found in file
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: data/h5/v1/single-neurite.h5:0:warning
1: Warning: no soma found in file
1: Skipping LoadSWCMorphologyLocale because `std::locale` failed.
1:
1: data/markers.asc:0:warning
1: Warning: no soma found in file
1:
1: data/annotations.asc:0:warning
1: Warning: no soma found in file
1:
1: Warning: section 1 is the only child of section: 0
1: It will be merged with the parent section
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: HDF5 GROUP:0:warning
1: Warning: no soma found in file
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: Warning: while appending section: 2 to parent: 1
1: The section first point should be parent section last point:
1: : X Y Z Diameter
1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000]
1: child first point :[0.000000, 13.200000, 0.000000, 2.300000]
1:
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: Warning: while appending section: 2 to parent: 1
1: The section first point should be parent section last point:
1: : X Y Z Diameter
1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000]
1: child first point :[0.000000, 13.200000, 0.000000, 2.300000]
1:
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: Warning: while appending section: 2 to parent: 1
1: The section first point should be parent section last point:
1: : X Y Z Diameter
1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000]
1: child first point :[0.000000, 13.200000, 0.000000, 2.300000]
1:
1:
1: HDF5 GROUP:0:warning
1: Warning: no soma found in file
1:
1: Warning: while appending section: 2 to parent: 1
1: The section first point should be parent section last point:
1: : X Y Z Diameter
1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000]
1: child first point :[0.000000, 13.200000, 0.000000, 2.300000]
1:
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: data/h5/v1/simple-dendritric-spine.h5:0:warning
1: Warning: no soma found in file
1:
1: HDF5 GROUP:0:warning
1: Warning: no soma found in file
1:
1: HDF5 GROUP:0:warning
1: Warning: no soma found in file
1: ===============================================================================
1: All tests passed (469 assertions in 60 test cases)
1:
1/1 Test #1: unittests ........................ Passed 0.09 sec
100% tests passed, 0 tests failed out of 1
Total Test time (real) = 0.09 sec
++ basename /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0
+ xdir=MorphIO-3.4.0
+ cd ..
+ k='not test_v2'
+ k='not test_v2 and not test_neurolucida_markers'
+ k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string'
+ k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria'
+ k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read'
+ k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ PATH=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/lib/python3.13/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=2
+ /usr/bin/pytest MorphIO-3.4.0/tests -k 'not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' -v
============================= test session starts ==============================
platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0
configfile: pyproject.toml
collecting ... collected 171 items / 8 deselected / 163 selected
MorphIO-3.4.0/tests/test_0_API.py::test_doc_exists PASSED [ 0%]
MorphIO-3.4.0/tests/test_0_API.py::test_mut_immut_have_same_methods PASSED [ 1%]
MorphIO-3.4.0/tests/test_10_vasculature.py::test_empty_vasculature PASSED [ 1%]
MorphIO-3.4.0/tests/test_10_vasculature.py::test_components_vasculature PASSED [ 2%]
MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_types PASSED [ 3%]
MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_offsets PASSED [ 3%]
MorphIO-3.4.0/tests/test_10_vasculature.py::test_section_connectivity PASSED [ 4%]
MorphIO-3.4.0/tests/test_10_vasculature.py::test_iterators_vasculature PASSED [ 4%]
MorphIO-3.4.0/tests/test_10_vasculature.py::test_from_pathlib PASSED [ 5%]
MorphIO-3.4.0/tests/test_10_vasculature.py::test_section___str__ PASSED [ 6%]
MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path0] PASSED [ 6%]
MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path1] PASSED [ 7%]
MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path0] PASSED [ 7%]
MorphIO-3.4.0/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path1] PASSED [ 8%]
MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered[collection_path0] PASSED [ 9%]
MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered[collection_path1] PASSED [ 9%]
MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered1[collection_path0] PASSED [ 10%]
MorphIO-3.4.0/tests/test_11_collection.py::test_container_unordered1[collection_path1] PASSED [ 11%]
MorphIO-3.4.0/tests/test_11_collection.py::test_container_with_warning_handler PASSED [ 11%]
MorphIO-3.4.0/tests/test_1_swc.py::test_basic PASSED [ 12%]
MorphIO-3.4.0/tests/test_1_swc.py::test_build_from_string PASSED [ 12%]
MorphIO-3.4.0/tests/test_1_swc.py::test_read_single_neurite PASSED [ 13%]
MorphIO-3.4.0/tests/test_1_swc.py::test_skip_comments PASSED [ 14%]
MorphIO-3.4.0/tests/test_1_swc.py::test_read_simple PASSED [ 14%]
MorphIO-3.4.0/tests/test_1_swc.py::test_set_raise_warnings PASSED [ 15%]
MorphIO-3.4.0/tests/test_1_swc.py::test_repeated_id PASSED [ 15%]
MorphIO-3.4.0/tests/test_1_swc.py::test_neurite_followed_by_soma PASSED [ 16%]
MorphIO-3.4.0/tests/test_1_swc.py::test_read_split_soma PASSED [ 17%]
MorphIO-3.4.0/tests/test_1_swc.py::test_weird_indent PASSED [ 17%]
MorphIO-3.4.0/tests/test_1_swc.py::test_cyclic PASSED [ 18%]
MorphIO-3.4.0/tests/test_1_swc.py::test_simple_reversed PASSED [ 19%]
MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_1_point PASSED [ 19%]
MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_2_point PASSED [ 20%]
MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_many_point PASSED [ 20%]
MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_3_point_neuromorpho PASSED [ 21%]
MorphIO-3.4.0/tests/test_1_swc.py::test_soma_type_3_point PASSED [ 22%]
MorphIO-3.4.0/tests/test_1_swc.py::test_swc_threepoint_soma_tolerance PASSED [ 22%]
MorphIO-3.4.0/tests/test_1_swc.py::test_read_weird_ids PASSED [ 23%]
MorphIO-3.4.0/tests/test_1_swc.py::test_multiple_soma PASSED [ 23%]
MorphIO-3.4.0/tests/test_1_swc.py::test_disconnected_neurite PASSED [ 24%]
MorphIO-3.4.0/tests/test_1_swc.py::test_neurite_wrong_root_point_neuromorpho_3_point_soma PASSED [ 25%]
MorphIO-3.4.0/tests/test_1_swc.py::test_read_duplicate PASSED [ 25%]
MorphIO-3.4.0/tests/test_1_swc.py::test_unsupported_section_type PASSED [ 26%]
MorphIO-3.4.0/tests/test_1_swc.py::test_three_point_soma_neuromorpho PASSED [ 26%]
MorphIO-3.4.0/tests/test_1_swc.py::test_three_point_soma_stacked_cylinders PASSED [ 27%]
MorphIO-3.4.0/tests/test_1_swc.py::test_trailing_space PASSED [ 28%]
MorphIO-3.4.0/tests/test_1_swc.py::test_zero_diameter PASSED [ 28%]
MorphIO-3.4.0/tests/test_1_swc.py::test_version PASSED [ 29%]
MorphIO-3.4.0/tests/test_1_swc.py::test_no_soma PASSED [ 30%]
MorphIO-3.4.0/tests/test_1_swc.py::test_throw_on_missing_data PASSED [ 30%]
MorphIO-3.4.0/tests/test_1_swc.py::test_throw_on_negative_id PASSED [ 31%]
MorphIO-3.4.0/tests/test_1_swc.py::test_axon_carrying_dendrite PASSED [ 31%]
MorphIO-3.4.0/tests/test_1_swc.py::test_multi_type_section PASSED [ 32%]
MorphIO-3.4.0/tests/test_1_swc.py::test_missing_parent PASSED [ 33%]
MorphIO-3.4.0/tests/test_1_swc.py::test_extra_column PASSED [ 33%]
MorphIO-3.4.0/tests/test_1_swc.py::test_read_simple_windows_eol PASSED [ 34%]
MorphIO-3.4.0/tests/test_1_swc.py::test_WarningHandlerCollector PASSED [ 34%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_soma PASSED [ 35%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_parse_number_with_plus_symbol PASSED [ 36%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unknown_token PASSED [ 36%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unfinished_point PASSED [ 37%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_multiple_soma PASSED [ 38%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_neurite_no_soma PASSED [ 38%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_header PASSED [ 39%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_read_with_duplicates PASSED [ 39%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_read_without_duplicates PASSED [ 40%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_explicit_duplicates_with_arbitrary_diameter PASSED [ 41%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_unfinished_file PASSED [ 41%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_section_single_point PASSED [ 42%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_children PASSED [ 42%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_spine PASSED [ 43%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent PASSED [ 44%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent_complex PASSED [ 44%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_spine1 PASSED [ 45%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_markers PASSED [ 46%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_string_markers PASSED [ 46%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_invalid_incomplete PASSED [ 47%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_font PASSED [ 47%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_skip_imagecoord PASSED [ 48%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_Sections_block PASSED [ 49%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_version PASSED [ 49%]
MorphIO-3.4.0/tests/test_2_neurolucida.py::test_load_from_string PASSED [ 50%]
MorphIO-3.4.0/tests/test_3_h5.py::test_v1 PASSED [ 50%]
MorphIO-3.4.0/tests/test_3_h5.py::test_wrong_section_type PASSED [ 51%]
MorphIO-3.4.0/tests/test_3_h5.py::test_soma_no_neurite PASSED [ 52%]
MorphIO-3.4.0/tests/test_3_h5.py::test_single_children PASSED [ 52%]
MorphIO-3.4.0/tests/test_4_immut.py::test_heterogeneous_sections PASSED [ 53%]
MorphIO-3.4.0/tests/test_4_immut.py::test_components PASSED [ 53%]
MorphIO-3.4.0/tests/test_4_immut.py::test_is_root PASSED [ 54%]
MorphIO-3.4.0/tests/test_4_immut.py::test_distance PASSED [ 55%]
MorphIO-3.4.0/tests/test_4_immut.py::test_iter PASSED [ 55%]
MorphIO-3.4.0/tests/test_4_immut.py::test_section_offsets PASSED [ 56%]
MorphIO-3.4.0/tests/test_4_immut.py::test_connectivity PASSED [ 57%]
MorphIO-3.4.0/tests/test_4_immut.py::test_endoplasmic_reticulum PASSED [ 57%]
MorphIO-3.4.0/tests/test_4_immut.py::test_section___str__ PASSED [ 58%]
MorphIO-3.4.0/tests/test_4_immut.py::test_section_has_same_shape PASSED [ 58%]
MorphIO-3.4.0/tests/test_4_immut.py::test_from_pathlib PASSED [ 59%]
MorphIO-3.4.0/tests/test_4_immut.py::test_more_iter PASSED [ 60%]
MorphIO-3.4.0/tests/test_4_immut.py::test_glia PASSED [ 60%]
MorphIO-3.4.0/tests/test_4_immut.py::test_dendritic_spine PASSED [ 61%]
MorphIO-3.4.0/tests/test_4_immut.py::test_dendritic_spine_add_root_section PASSED [ 61%]
MorphIO-3.4.0/tests/test_5_mut.py::test_heterogeneous_sections PASSED [ 62%]
MorphIO-3.4.0/tests/test_5_mut.py::test_point_level PASSED [ 63%]
MorphIO-3.4.0/tests/test_5_mut.py::test_connectivity PASSED [ 63%]
MorphIO-3.4.0/tests/test_5_mut.py::test_empty_neurite PASSED [ 64%]
MorphIO-3.4.0/tests/test_5_mut.py::test_single_neurite PASSED [ 65%]
MorphIO-3.4.0/tests/test_5_mut.py::test_child_section PASSED [ 65%]
MorphIO-3.4.0/tests/test_5_mut.py::test_append_no_duplicate PASSED [ 66%]
MorphIO-3.4.0/tests/test_5_mut.py::test_mut_copy_ctor PASSED [ 66%]
MorphIO-3.4.0/tests/test_5_mut.py::test_build_read_only PASSED [ 67%]
MorphIO-3.4.0/tests/test_5_mut.py::test_mutable_immutable_equivalence PASSED [ 68%]
MorphIO-3.4.0/tests/test_5_mut.py::test_sections_are_not_dereferenced PASSED [ 68%]
MorphIO-3.4.0/tests/test_5_mut.py::test_append_mutable_section PASSED [ 69%]
MorphIO-3.4.0/tests/test_5_mut.py::test_iterators PASSED [ 69%]
MorphIO-3.4.0/tests/test_5_mut.py::test_non_C_nparray PASSED [ 70%]
MorphIO-3.4.0/tests/test_5_mut.py::test_annotation PASSED [ 71%]
MorphIO-3.4.0/tests/test_5_mut.py::test_empty_sibling PASSED [ 71%]
MorphIO-3.4.0/tests/test_5_mut.py::test_nested_single_child PASSED [ 72%]
MorphIO-3.4.0/tests/test_5_mut.py::test_section___str__ PASSED [ 73%]
MorphIO-3.4.0/tests/test_5_mut.py::test_from_pathlib PASSED [ 73%]
MorphIO-3.4.0/tests/test_5_mut.py::test_endoplasmic_reticulum PASSED [ 74%]
MorphIO-3.4.0/tests/test_5_mut.py::test_remove_unifurcations PASSED [ 74%]
MorphIO-3.4.0/tests/test_5_mut.py::test_remove_rootsection PASSED [ 75%]
MorphIO-3.4.0/tests/test_5_mut.py::test_remove_rootsection_in_loop PASSED [ 76%]
MorphIO-3.4.0/tests/test_5_mut.py::test_glia PASSED [ 76%]
MorphIO-3.4.0/tests/test_5_mut.py::test_glia_round_trip PASSED [ 77%]
MorphIO-3.4.0/tests/test_5_mut.py::test_dendritic_spine PASSED [ 77%]
MorphIO-3.4.0/tests/test_5_mut.py::test_dendritic_spine_round_trip PASSED [ 78%]
MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_destroyed_morphology PASSED [ 79%]
MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_access_properties_no_morphology PASSED [ 79%]
MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_copy_single_section PASSED [ 80%]
MorphIO-3.4.0/tests/test_5_mut.py::test_lifetime_iteration_fails_with_orphan_section PASSED [ 80%]
MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section PASSED [ 81%]
MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section_multiple PASSED [ 82%]
MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__maintain_children_order_root_section PASSED [ 82%]
MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__unifurcation_bridge PASSED [ 83%]
MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__remove_all_children PASSED [ 84%]
MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__append_delete PASSED [ 84%]
MorphIO-3.4.0/tests/test_5_mut.py::test_delete_section__traversals PASSED [ 85%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_empty_file PASSED [ 85%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_undefined_soma PASSED [ 86%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_basic PASSED [ 87%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_basic PASSED [ 87%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_merge_only_child_asc_h5 PASSED [ 88%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_merge_only_child_swc PASSED [ 88%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_perimeter PASSED [ 89%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_no_soma PASSED [ 90%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma__points_no_diameters PASSED [ 90%]
MorphIO-3.4.0/tests/test_6_writers.py::test_duplicate_different_diameter PASSED [ 91%]
MorphIO-3.4.0/tests/test_6_writers.py::test_single_point_root_section PASSED [ 92%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_custom_property__throws PASSED [ 92%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_types PASSED [ 93%]
MorphIO-3.4.0/tests/test_6_writers.py::test_write_soma_invariants PASSED [ 93%]
MorphIO-3.4.0/tests/test_6_writers.py::test_diameter_mismatch PASSED [ 94%]
MorphIO-3.4.0/tests/test_7_modifiers.py::test_no_modifier PASSED [ 95%]
MorphIO-3.4.0/tests/test_7_modifiers.py::test_nrn_order PASSED [ 95%]
MorphIO-3.4.0/tests/test_7_modifiers.py::test_nrn_order_stability PASSED [ 96%]
MorphIO-3.4.0/tests/test_7_modifiers.py::test_two_point_section PASSED [ 96%]
MorphIO-3.4.0/tests/test_7_modifiers.py::test_soma_sphere PASSED [ 97%]
MorphIO-3.4.0/tests/test_7_modifiers.py::test_no_duplicate PASSED [ 98%]
MorphIO-3.4.0/tests/test_8_all_morphologies.py::test_all SKIPPED (ba...) [ 98%]
MorphIO-3.4.0/tests/test_9_surfaces.py::test_stacked_cylinder PASSED [ 99%]
MorphIO-3.4.0/tests/test_9_surfaces.py::test_contour PASSED [100%]
================= 162 passed, 1 skipped, 8 deselected in 0.72s =================
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: morphio-3.4.0-4.fc41.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.11fRzD
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd MorphIO-3.4.0
+ LICENSEDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio
+ cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/LICENSE.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libmorphio.so.0.0.0()(64bit) morphio = 3.4.0-4.fc41 morphio(x86-64) = 3.4.0-4.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: morphio-devel-3.4.0-4.fc41.x86_64
Provides: cmake(MorphIO) cmake(morphio) morphio-devel = 3.4.0-4.fc41 morphio-devel(x86-64) = 3.4.0-4.fc41 morphio-static = 3.4.0-4.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: cmake-filesystem(x86-64) libmorphio.so.0.0.0()(64bit)
Processing files: python3-morphio-3.4.0-4.fc41.x86_64
Provides: python-morphio = 3.4.0-4.fc41 python3-morphio = 3.4.0-4.fc41 python3-morphio(x86-64) = 3.4.0-4.fc41 python3.13-morphio = 3.4.0-4.fc41 python3.13dist(morphio) = 3.4 python3dist(morphio) = 3.4
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.14.1 rtld(GNU_HASH)
Processing files: morphio-doc-3.4.0-4.fc41.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ELkw0U
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd MorphIO-3.4.0
+ DOCDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc
+ cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/AUTHORS.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc
+ cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/CHANGELOG.md /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc
+ cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/CONTRIBUTING.md /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc
+ cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/README.rst /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc
+ cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/examples /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/doc/morphio-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nSC7om
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ cd MorphIO-3.4.0
+ LICENSEDIR=/builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc
+ cp -pr /builddir/build/BUILD/morphio-3.4.0-build/MorphIO-3.4.0/LICENSE.txt /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT/usr/share/licenses/morphio-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: morphio-doc = 3.4.0-4.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: morphio-debugsource-3.4.0-4.fc41.x86_64
Provides: morphio-debugsource = 3.4.0-4.fc41 morphio-debugsource(x86-64) = 3.4.0-4.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: morphio-debuginfo-3.4.0-4.fc41.x86_64
Provides: debuginfo(build-id) = 8548c0d09bdf2e0d47f3711e478bbc9f6052ccdb libmorphio.so.0.0.0-3.4.0-4.fc41.x86_64.debug()(64bit) morphio-debuginfo = 3.4.0-4.fc41 morphio-debuginfo(x86-64) = 3.4.0-4.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: morphio-debugsource(x86-64) = 3.4.0-4.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/morphio-3.4.0-build/BUILDROOT
Wrote: /builddir/build/SRPMS/morphio-3.4.0-4.fc41.src.rpm
Wrote: /builddir/build/RPMS/python3-morphio-3.4.0-4.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/morphio-3.4.0-4.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/morphio-debugsource-3.4.0-4.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/morphio-devel-3.4.0-4.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/morphio-doc-3.4.0-4.fc41.noarch.rpm
Wrote: /builddir/build/RPMS/morphio-debuginfo-3.4.0-4.fc41.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Oytikb
+ umask 022
+ cd /builddir/build/BUILD/morphio-3.4.0-build
+ test -d /builddir/build/BUILD/morphio-3.4.0-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.4.0-build
+ rm -rf /builddir/build/BUILD/morphio-3.4.0-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild morphio-3.4.0-4.fc41.src.rpm
Finish: build phase for morphio-3.4.0-4.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-x86_64-1732210602.760077/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/morphio-3.4.0-4.fc41.src.rpm) Config(child) 5 minutes 7 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
"packages": [
{
"name": "morphio-debugsource",
"epoch": null,
"version": "3.4.0",
"release": "4.fc41",
"arch": "x86_64"
},
{
"name": "morphio-doc",
"epoch": null,
"version": "3.4.0",
"release": "4.fc41",
"arch": "noarch"
},
{
"name": "morphio-devel",
"epoch": null,
"version": "3.4.0",
"release": "4.fc41",
"arch": "x86_64"
},
{
"name": "morphio-debuginfo",
"epoch": null,
"version": "3.4.0",
"release": "4.fc41",
"arch": "x86_64"
},
{
"name": "python3-morphio",
"epoch": null,
"version": "3.4.0",
"release": "4.fc41",
"arch": "x86_64"
},
{
"name": "morphio",
"epoch": null,
"version": "3.4.0",
"release": "4.fc41",
"arch": "x86_64"
},
{
"name": "morphio",
"epoch": null,
"version": "3.4.0",
"release": "4.fc41",
"arch": "src"
}
]
}
RPMResults finished