Warning: Permanently added '34.204.17.163' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408261-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64


Version: 0.69
PID: 5747
Logging PID: 5748
Task:
{'appstream': False,
 'background': True,
 'build_id': 6408261,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-aarch64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '9a1c29996af7c4c77ddea2c5f9443e30fa48ef01',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/samtools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'samtools',
 'package_version': '1.15.1-3',
 'project_dirname': 'zlib-ng-compat-mpb',
 'project_name': 'zlib-ng-compat-mpb',
 'project_owner': 'tuliom',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-aarch64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom',
 'source_json': {},
 'source_type': None,
 'submitter': 'tuliom',
 'tags': [],
 'task_id': '6408261-fedora-rawhide-aarch64',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/samtools /var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/samtools', '/var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools'...

Running: git checkout 9a1c29996af7c4c77ddea2c5f9443e30fa48ef01 --

cmd: ['git', 'checkout', '9a1c29996af7c4c77ddea2c5f9443e30fa48ef01', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools
rc: 0
stdout: 
stderr: Note: switching to '9a1c29996af7c4c77ddea2c5f9443e30fa48ef01'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 9a1c299 automatic import of samtools

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading samtools-1.15.1.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o samtools-1.15.1.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/samtools/samtools-1.15.1.tar.bz2/md5/b71d1aa1de9749773b1a04bf54281ca0/samtools-1.15.1.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
                                 Dload  Upload   Total   Spent    Left  Speed
100 7648k  100 7648k    0     0  33.7M      0 --:--:-- --:--:-- --:--:-- 33.7M
INFO: Reading stdout from command: md5sum samtools-1.15.1.tar.bz2

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695062940.091470 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools/samtools.spec)  Config(fedora-rawhide-aarch64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.1.1
INFO: Mock Version: 5.1.1
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695062940.091470/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695062940.091470/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/6b7b08738a6b08a77b8601aad704e0da8721b781c4fea9fa993132ac8cac7130/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/6b7b08738a6b08a77b8601aad704e0da8721b781c4fea9fa993132ac8cac7130/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  91 MB/s | 5.7 MB     00:00    
fedora                                           46 MB/s |  69 MB     00:01    
Package python3-dnf-4.16.2-4.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch        Version              Repository  Size
================================================================================
Installing:
 python3-dnf-plugins-core     noarch      4.4.2-1.fc39         fedora     293 k
Installing dependencies:
 dbus-libs                    aarch64     1:1.14.10-1.fc40     fedora     156 k
 python3-dateutil             noarch      1:2.8.2-10.fc39      fedora     355 k
 python3-dbus                 aarch64     1.3.2-4.fc39         fedora     157 k
 python3-distro               noarch      1.8.0-6.fc39         fedora      49 k
 python3-six                  noarch      1.16.0-12.fc39       fedora      41 k
 python3-systemd              aarch64     235-5.fc39           fedora     107 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 1.1 M
Installed size: 4.6 M
Downloading Packages:
(1/7): python3-dbus-1.3.2-4.fc39.aarch64.rpm    6.6 MB/s | 157 kB     00:00    
(2/7): dbus-libs-1.14.10-1.fc40.aarch64.rpm     6.2 MB/s | 156 kB     00:00    
(3/7): python3-distro-1.8.0-6.fc39.noarch.rpm    11 MB/s |  49 kB     00:00    
(4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp  12 MB/s | 355 kB     00:00    
(5/7): python3-six-1.16.0-12.fc39.noarch.rpm     11 MB/s |  41 kB     00:00    
(6/7): python3-dnf-plugins-core-4.4.2-1.fc39.no  27 MB/s | 293 kB     00:00    
(7/7): python3-systemd-235-5.fc39.aarch64.rpm    17 MB/s | 107 kB     00:00    
--------------------------------------------------------------------------------
Total                                            11 MB/s | 1.1 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : python3-systemd-235-5.fc39.aarch64                     1/7 
  Installing       : python3-six-1.16.0-12.fc39.noarch                      2/7 
  Installing       : python3-dateutil-1:2.8.2-10.fc39.noarch                3/7 
  Installing       : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Installing       : dbus-libs-1:1.14.10-1.fc40.aarch64                     5/7 
  Installing       : python3-dbus-1.3.2-4.fc39.aarch64                      6/7 
  Installing       : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Verifying        : dbus-libs-1:1.14.10-1.fc40.aarch64                     1/7 
  Verifying        : python3-dateutil-1:2.8.2-10.fc39.noarch                2/7 
  Verifying        : python3-dbus-1.3.2-4.fc39.aarch64                      3/7 
  Verifying        : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Verifying        : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           5/7 
  Verifying        : python3-six-1.16.0-12.fc39.noarch                      6/7 
  Verifying        : python3-systemd-235-5.fc39.aarch64                     7/7 

Installed:
  dbus-libs-1:1.14.10-1.fc40.aarch64                                            
  python3-dateutil-1:2.8.2-10.fc39.noarch                                       
  python3-dbus-1.3.2-4.fc39.aarch64                                             
  python3-distro-1.8.0-6.fc39.noarch                                            
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch                                  
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-systemd-235-5.fc39.aarch64                                            

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695062940.091470/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  89 MB/s | 5.7 MB     00:00    
fedora                                           52 MB/s |  69 MB     00:01    
Last metadata expiration check: 0:00:01 ago on Mon Sep 18 18:49:32 2023.
Dependencies resolved.
================================================================================
 Package                     Arch    Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                        aarch64 5.2.15-5.fc39              fedora    1.8 M
 bzip2                       aarch64 1.0.8-16.fc39              fedora     52 k
 coreutils                   aarch64 9.4-1.fc40                 fedora    1.2 M
 cpio                        aarch64 2.14-4.fc39                fedora    277 k
 diffutils                   aarch64 3.10-3.fc39                fedora    396 k
 fedora-release-common       noarch  40-0.7                     fedora     18 k
 findutils                   aarch64 1:4.9.0-6.fc40             fedora    495 k
 gawk                        aarch64 5.2.2-2.fc39               fedora    1.1 M
 glibc-minimal-langpack      aarch64 2.38.9000-8.fc40           copr_base  73 k
 grep                        aarch64 3.11-5.fc40                fedora    296 k
 gzip                        aarch64 1.12-6.fc39                fedora    164 k
 info                        aarch64 7.0.3-3.fc39               fedora    179 k
 patch                       aarch64 2.7.6-22.fc39              fedora    123 k
 redhat-rpm-config           noarch  270-1.fc40                 copr_base  74 k
 rpm-build                   aarch64 4.18.99-1.fc40             copr_base  72 k
 sed                         aarch64 4.8-14.fc39                fedora    304 k
 shadow-utils                aarch64 2:4.14.0-1.fc40            fedora    1.3 M
 tar                         aarch64 2:1.35-2.fc40              fedora    854 k
 unzip                       aarch64 6.0-62.fc39                fedora    183 k
 util-linux                  aarch64 2.39.2-1.fc40              copr_base 1.1 M
 which                       aarch64 2.21-40.fc39               fedora     42 k
 xz                          aarch64 5.4.4-1.fc39               fedora    556 k
Installing dependencies:
 alternatives                aarch64 1.25-1.fc39                fedora     38 k
 ansible-srpm-macros         noarch  1-11.fc39                  fedora     21 k
 audit-libs                  aarch64 3.1.2-4.fc40               fedora    118 k
 authselect                  aarch64 1.4.2-3.fc39               fedora    144 k
 authselect-libs             aarch64 1.4.2-3.fc39               fedora    249 k
 basesystem                  noarch  11-18.fc39                 fedora    7.2 k
 binutils                    aarch64 2.41-5.fc40                fedora    6.7 M
 binutils-gold               aarch64 2.41-5.fc40                fedora    948 k
 bzip2-libs                  aarch64 1.0.8-16.fc39              fedora     43 k
 ca-certificates             noarch  2023.2.60_v7.0.306-3.fc40  fedora    837 k
 coreutils-common            aarch64 9.4-1.fc40                 fedora    2.1 M
 cracklib                    aarch64 2.9.11-2.fc40              copr_base  84 k
 crypto-policies             noarch  20230731-1.git5ed06e0.fc39 fedora     99 k
 curl                        aarch64 8.3.0-1.fc40               copr_base 350 k
 cyrus-sasl-lib              aarch64 2.1.28-11.fc40             copr_base 781 k
 debugedit                   aarch64 5.0-10.fc39                fedora     77 k
 dwz                         aarch64 0.15-3.fc39                fedora    136 k
 ed                          aarch64 1.19-4.fc39                fedora     78 k
 efi-srpm-macros             noarch  5-9.fc39                   fedora     22 k
 elfutils                    aarch64 0.189-6.fc40               fedora    539 k
 elfutils-debuginfod-client  aarch64 0.189-6.fc40               fedora     38 k
 elfutils-default-yama-scope noarch  0.189-6.fc40               fedora     13 k
 elfutils-libelf             aarch64 0.189-6.fc40               fedora    194 k
 elfutils-libs               aarch64 0.189-6.fc40               fedora    258 k
 fedora-gpg-keys             noarch  40-0.1                     fedora    130 k
 fedora-release              noarch  40-0.7                     fedora    8.0 k
 fedora-release-identity-basic
                             noarch  40-0.7                     fedora    8.8 k
 fedora-repos                noarch  40-0.1                     fedora    9.4 k
 fedora-repos-rawhide        noarch  40-0.1                     fedora    9.0 k
 file                        aarch64 5.45-1.fc40                copr_base  50 k
 file-libs                   aarch64 5.45-1.fc40                copr_base 762 k
 filesystem                  aarch64 3.18-6.fc39                fedora    1.1 M
 fonts-srpm-macros           noarch  1:2.0.5-12.fc39            fedora     26 k
 forge-srpm-macros           noarch  0.1.0-1.fc40               fedora     18 k
 fpc-srpm-macros             noarch  1.3-8.fc39                 fedora    7.4 k
 gdb-minimal                 aarch64 13.2-8.fc40                fedora    3.8 M
 gdbm-libs                   aarch64 1:1.23-4.fc39              fedora     56 k
 ghc-srpm-macros             noarch  1.6.1-2.fc39               fedora    7.8 k
 glibc                       aarch64 2.38.9000-8.fc40           copr_base 1.7 M
 glibc-common                aarch64 2.38.9000-8.fc40           copr_base 346 k
 glibc-gconv-extra           aarch64 2.38.9000-8.fc40           copr_base 2.0 M
 gmp                         aarch64 1:6.2.1-5.fc39             fedora    266 k
 gnat-srpm-macros            noarch  6-3.fc39                   fedora    8.8 k
 go-srpm-macros              noarch  3.2.0-7.fc40               fedora     27 k
 jansson                     aarch64 2.13.1-7.fc39              fedora     46 k
 kernel-srpm-macros          noarch  1.0-20.fc39                fedora     10 k
 keyutils-libs               aarch64 1.6.1-7.fc39               fedora     31 k
 krb5-libs                   aarch64 1.21.2-1.fc40              fedora    772 k
 libacl                      aarch64 2.3.1-9.fc40               fedora     23 k
 libarchive                  aarch64 3.7.2-1.fc40               copr_base 403 k
 libattr                     aarch64 2.5.1-9.fc40               fedora     18 k
 libblkid                    aarch64 2.39.2-1.fc40              copr_base 116 k
 libbrotli                   aarch64 1.1.0-1.fc40               fedora    344 k
 libcap                      aarch64 2.48-7.fc39                fedora     68 k
 libcap-ng                   aarch64 0.8.3-8.fc40               fedora     32 k
 libcom_err                  aarch64 1.47.0-2.fc39              fedora     26 k
 libcurl                     aarch64 8.3.0-1.fc40               copr_base 337 k
 libdb                       aarch64 5.3.28-58.fc40             copr_base 735 k
 libeconf                    aarch64 0.5.2-1.fc40               fedora     30 k
 libevent                    aarch64 2.1.12-9.fc39              fedora    254 k
 libfdisk                    aarch64 2.39.2-1.fc40              copr_base 158 k
 libffi                      aarch64 3.4.4-4.fc39               fedora     38 k
 libgcc                      aarch64 13.2.1-1.fc40              copr_base  94 k
 libgomp                     aarch64 13.2.1-1.fc40              copr_base 311 k
 libidn2                     aarch64 2.3.4-3.fc39               fedora    118 k
 libmount                    aarch64 2.39.2-1.fc40              copr_base 153 k
 libnghttp2                  aarch64 1.56.0-1.fc40              copr_base  76 k
 libnsl2                     aarch64 2.0.0-6.fc39               fedora     30 k
 libpkgconf                  aarch64 1.9.5-2.fc39               fedora     38 k
 libpsl                      aarch64 0.21.2-4.fc39              fedora     63 k
 libpwquality                aarch64 1.4.5-6.fc39               fedora    120 k
 libselinux                  aarch64 3.5-5.fc39                 fedora     86 k
 libsemanage                 aarch64 3.5-4.fc39                 fedora    117 k
 libsepol                    aarch64 3.5-2.fc39                 fedora    311 k
 libsigsegv                  aarch64 2.14-5.fc39                fedora     27 k
 libsmartcols                aarch64 2.39.2-1.fc40              copr_base  66 k
 libssh                      aarch64 0.10.5-2.fc40              copr_base 212 k
 libssh-config               noarch  0.10.5-2.fc40              copr_base 9.7 k
 libstdc++                   aarch64 13.2.1-1.fc40              copr_base 810 k
 libtasn1                    aarch64 4.19.0-3.fc39              fedora     73 k
 libtirpc                    aarch64 1.3.3-1.rc2.fc39           fedora     95 k
 libunistring                aarch64 1.1-5.fc40                 fedora    540 k
 libutempter                 aarch64 1.2.1-10.fc39              fedora     27 k
 libuuid                     aarch64 2.39.2-1.fc40              copr_base  28 k
 libverto                    aarch64 0.3.2-6.fc39               fedora     21 k
 libxcrypt                   aarch64 4.4.36-2.fc39              fedora    123 k
 libxml2                     aarch64 2.11.5-1.fc40              copr_base 687 k
 libzstd                     aarch64 1.5.5-4.fc40               copr_base 281 k
 lua-libs                    aarch64 5.4.6-3.fc39               fedora    131 k
 lua-srpm-macros             noarch  1-9.fc39                   fedora    8.6 k
 lz4-libs                    aarch64 1.9.4-4.fc39               fedora     68 k
 mpfr                        aarch64 4.2.0-3.fc39               fedora    319 k
 ncurses-base                noarch  6.4-7.20230520.fc40        fedora     88 k
 ncurses-libs                aarch64 6.4-7.20230520.fc40        fedora    326 k
 ocaml-srpm-macros           noarch  8-2.fc39                   fedora     14 k
 openblas-srpm-macros        noarch  2-14.fc39                  fedora    7.5 k
 openldap                    aarch64 2.6.6-1.fc39               fedora    251 k
 openssl-libs                aarch64 1:3.1.1-4.fc40             copr_base 2.0 M
 p11-kit                     aarch64 0.25.0-2.fc39              fedora    481 k
 p11-kit-trust               aarch64 0.25.0-2.fc39              fedora    140 k
 package-notes-srpm-macros   noarch  0.5-9.fc39                 fedora     11 k
 pam                         aarch64 1.5.3-2.fc39               fedora    558 k
 pam-libs                    aarch64 1.5.3-2.fc39               fedora     58 k
 pcre2                       aarch64 10.42-1.fc39.2             fedora    219 k
 pcre2-syntax                noarch  10.42-1.fc39.2             fedora    143 k
 perl-srpm-macros            noarch  1-51.fc39                  fedora    8.0 k
 pkgconf                     aarch64 1.9.5-2.fc39               fedora     42 k
 pkgconf-m4                  noarch  1.9.5-2.fc39               fedora     14 k
 pkgconf-pkg-config          aarch64 1.9.5-2.fc39               fedora    9.6 k
 popt                        aarch64 1.19-3.fc39                fedora     66 k
 publicsuffix-list-dafsa     noarch  20230812-1.fc40            fedora     57 k
 pyproject-srpm-macros       noarch  1.9.0-2.fc39               fedora     14 k
 python-srpm-macros          noarch  3.12-4.fc40                fedora     25 k
 qt5-srpm-macros             noarch  5.15.10-2.fc39             fedora    8.3 k
 qt6-srpm-macros             noarch  6.5.2-2.fc39               fedora    9.2 k
 readline                    aarch64 8.2-4.fc39                 fedora    211 k
 rpm                         aarch64 4.18.99-1.fc40             copr_base 509 k
 rpm-build-libs              aarch64 4.18.99-1.fc40             copr_base  92 k
 rpm-libs                    aarch64 4.18.99-1.fc40             copr_base 306 k
 rpm-sequoia                 aarch64 1.5.0-1.fc40               fedora    842 k
 rust-srpm-macros            noarch  24-5.fc40                  fedora     12 k
 setup                       noarch  2.14.4-1.fc39              fedora    154 k
 sqlite-libs                 aarch64 3.43.1-1.fc40              fedora    679 k
 systemd-libs                aarch64 254.1-2.fc40               fedora    668 k
 tzdata                      noarch  2023c-3.fc40               fedora    718 k
 util-linux-core             aarch64 2.39.2-1.fc40              copr_base 477 k
 xxhash-libs                 aarch64 0.8.2-1.fc39               fedora     35 k
 xz-libs                     aarch64 5.4.4-1.fc39               fedora    106 k
 zip                         aarch64 3.0-38.fc39                fedora    262 k
 zlib-ng-compat              aarch64 2.1.3-3.fc40               copr_base  68 k
 zstd                        aarch64 1.5.5-4.fc40               copr_base 446 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  153 Packages

Total download size: 53 M
Installed size: 304 M
Downloading Packages:
(1/153): cracklib-2.9.11-2.fc40.aarch64.rpm     4.8 MB/s |  84 kB     00:00    
(2/153): file-5.45-1.fc40.aarch64.rpm            43 MB/s |  50 kB     00:00    
(3/153): cyrus-sasl-lib-2.1.28-11.fc40.aarch64.  36 MB/s | 781 kB     00:00    
(4/153): curl-8.3.0-1.fc40.aarch64.rpm           15 MB/s | 350 kB     00:00    
(5/153): file-libs-5.45-1.fc40.aarch64.rpm       83 MB/s | 762 kB     00:00    
(6/153): glibc-common-2.38.9000-8.fc40.aarch64.  54 MB/s | 346 kB     00:00    
(7/153): glibc-2.38.9000-8.fc40.aarch64.rpm     177 MB/s | 1.7 MB     00:00    
(8/153): glibc-minimal-langpack-2.38.9000-8.fc4  13 MB/s |  73 kB     00:00    
(9/153): glibc-gconv-extra-2.38.9000-8.fc40.aar 220 MB/s | 2.0 MB     00:00    
(10/153): libarchive-3.7.2-1.fc40.aarch64.rpm    91 MB/s | 403 kB     00:00    
(11/153): libblkid-2.39.2-1.fc40.aarch64.rpm     30 MB/s | 116 kB     00:00    
(12/153): libcurl-8.3.0-1.fc40.aarch64.rpm      105 MB/s | 337 kB     00:00    
(13/153): libdb-5.3.28-58.fc40.aarch64.rpm      182 MB/s | 735 kB     00:00    
(14/153): libfdisk-2.39.2-1.fc40.aarch64.rpm     35 MB/s | 158 kB     00:00    
(15/153): libgcc-13.2.1-1.fc40.aarch64.rpm       72 MB/s |  94 kB     00:00    
(16/153): libgomp-13.2.1-1.fc40.aarch64.rpm     125 MB/s | 311 kB     00:00    
(17/153): libmount-2.39.2-1.fc40.aarch64.rpm     55 MB/s | 153 kB     00:00    
(18/153): libnghttp2-1.56.0-1.fc40.aarch64.rpm   36 MB/s |  76 kB     00:00    
(19/153): libsmartcols-2.39.2-1.fc40.aarch64.rp  51 MB/s |  66 kB     00:00    
(20/153): libssh-0.10.5-2.fc40.aarch64.rpm       57 MB/s | 212 kB     00:00    
(21/153): libstdc++-13.2.1-1.fc40.aarch64.rpm   225 MB/s | 810 kB     00:00    
(22/153): libssh-config-0.10.5-2.fc40.noarch.rp 2.1 MB/s | 9.7 kB     00:00    
(23/153): libuuid-2.39.2-1.fc40.aarch64.rpm      26 MB/s |  28 kB     00:00    
(24/153): libxml2-2.11.5-1.fc40.aarch64.rpm     187 MB/s | 687 kB     00:00    
(25/153): libzstd-1.5.5-4.fc40.aarch64.rpm       74 MB/s | 281 kB     00:00    
(26/153): openssl-libs-3.1.1-4.fc40.aarch64.rpm 230 MB/s | 2.0 MB     00:00    
(27/153): redhat-rpm-config-270-1.fc40.noarch.r  16 MB/s |  74 kB     00:00    
(28/153): rpm-4.18.99-1.fc40.aarch64.rpm         79 MB/s | 509 kB     00:00    
(29/153): rpm-build-4.18.99-1.fc40.aarch64.rpm   39 MB/s |  72 kB     00:00    
(30/153): rpm-build-libs-4.18.99-1.fc40.aarch64  37 MB/s |  92 kB     00:00    
(31/153): rpm-libs-4.18.99-1.fc40.aarch64.rpm   105 MB/s | 306 kB     00:00    
(32/153): util-linux-2.39.2-1.fc40.aarch64.rpm  192 MB/s | 1.1 MB     00:00    
(33/153): util-linux-core-2.39.2-1.fc40.aarch64  88 MB/s | 477 kB     00:00    
(34/153): zlib-ng-compat-2.1.3-3.fc40.aarch64.r  24 MB/s |  68 kB     00:00    
(35/153): zstd-1.5.5-4.fc40.aarch64.rpm         200 MB/s | 446 kB     00:00    
(36/153): alternatives-1.25-1.fc39.aarch64.rpm  3.8 MB/s |  38 kB     00:00    
(37/153): ansible-srpm-macros-1-11.fc39.noarch. 2.2 MB/s |  21 kB     00:00    
(38/153): audit-libs-3.1.2-4.fc40.aarch64.rpm   9.1 MB/s | 118 kB     00:00    
(39/153): authselect-1.4.2-3.fc39.aarch64.rpm    20 MB/s | 144 kB     00:00    
(40/153): authselect-libs-1.4.2-3.fc39.aarch64.  28 MB/s | 249 kB     00:00    
(41/153): basesystem-11-18.fc39.noarch.rpm      2.4 MB/s | 7.2 kB     00:00    
(42/153): binutils-gold-2.41-5.fc40.aarch64.rpm  17 MB/s | 948 kB     00:00    
(43/153): bzip2-1.0.8-16.fc39.aarch64.rpm        10 MB/s |  52 kB     00:00    
(44/153): bzip2-libs-1.0.8-16.fc39.aarch64.rpm  8.8 MB/s |  43 kB     00:00    
(45/153): ca-certificates-2023.2.60_v7.0.306-3.  37 MB/s | 837 kB     00:00    
(46/153): bash-5.2.15-5.fc39.aarch64.rpm         19 MB/s | 1.8 MB     00:00    
(47/153): coreutils-9.4-1.fc40.aarch64.rpm       43 MB/s | 1.2 MB     00:00    
(48/153): cpio-2.14-4.fc39.aarch64.rpm           56 MB/s | 277 kB     00:00    
(49/153): crypto-policies-20230731-1.git5ed06e0  17 MB/s |  99 kB     00:00    
(50/153): debugedit-5.0-10.fc39.aarch64.rpm      14 MB/s |  77 kB     00:00    
(51/153): diffutils-3.10-3.fc39.aarch64.rpm      17 MB/s | 396 kB     00:00    
(52/153): coreutils-common-9.4-1.fc40.aarch64.r  28 MB/s | 2.1 MB     00:00    
(53/153): dwz-0.15-3.fc39.aarch64.rpm            11 MB/s | 136 kB     00:00    
(54/153): efi-srpm-macros-5-9.fc39.noarch.rpm   8.7 MB/s |  22 kB     00:00    
(55/153): ed-1.19-4.fc39.aarch64.rpm             14 MB/s |  78 kB     00:00    
(56/153): elfutils-debuginfod-client-0.189-6.fc  13 MB/s |  38 kB     00:00    
(57/153): elfutils-default-yama-scope-0.189-6.f 2.6 MB/s |  13 kB     00:00    
(58/153): elfutils-0.189-6.fc40.aarch64.rpm      37 MB/s | 539 kB     00:00    
(59/153): elfutils-libelf-0.189-6.fc40.aarch64.  35 MB/s | 194 kB     00:00    
(60/153): elfutils-libs-0.189-6.fc40.aarch64.rp  31 MB/s | 258 kB     00:00    
(61/153): fedora-gpg-keys-40-0.1.noarch.rpm      18 MB/s | 130 kB     00:00    
(62/153): fedora-release-40-0.7.noarch.rpm      3.2 MB/s | 8.0 kB     00:00    
(63/153): fedora-release-common-40-0.7.noarch.r 7.3 MB/s |  18 kB     00:00    
(64/153): fedora-release-identity-basic-40-0.7. 3.7 MB/s | 8.8 kB     00:00    
(65/153): fedora-repos-40-0.1.noarch.rpm        3.9 MB/s | 9.4 kB     00:00    
(66/153): fedora-repos-rawhide-40-0.1.noarch.rp 2.3 MB/s | 9.0 kB     00:00    
(67/153): findutils-4.9.0-6.fc40.aarch64.rpm     38 MB/s | 495 kB     00:00    
(68/153): fonts-srpm-macros-2.0.5-12.fc39.noarc  12 MB/s |  26 kB     00:00    
(69/153): forge-srpm-macros-0.1.0-1.fc40.noarch 6.6 MB/s |  18 kB     00:00    
(70/153): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 2.7 MB/s | 7.4 kB     00:00    
(71/153): filesystem-3.18-6.fc39.aarch64.rpm     31 MB/s | 1.1 MB     00:00    
(72/153): gawk-5.2.2-2.fc39.aarch64.rpm          39 MB/s | 1.1 MB     00:00    
(73/153): gdbm-libs-1.23-4.fc39.aarch64.rpm      14 MB/s |  56 kB     00:00    
(74/153): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 3.6 MB/s | 7.8 kB     00:00    
(75/153): gmp-6.2.1-5.fc39.aarch64.rpm           26 MB/s | 266 kB     00:00    
(76/153): gnat-srpm-macros-6-3.fc39.noarch.rpm  5.2 MB/s | 8.8 kB     00:00    
(77/153): go-srpm-macros-3.2.0-7.fc40.noarch.rp  18 MB/s |  27 kB     00:00    
(78/153): binutils-2.41-5.fc40.aarch64.rpm       23 MB/s | 6.7 MB     00:00    
(79/153): grep-3.11-5.fc40.aarch64.rpm           23 MB/s | 296 kB     00:00    
(80/153): gzip-1.12-6.fc39.aarch64.rpm           31 MB/s | 164 kB     00:00    
(81/153): info-7.0.3-3.fc39.aarch64.rpm          33 MB/s | 179 kB     00:00    
(82/153): kernel-srpm-macros-1.0-20.fc39.noarch 4.1 MB/s |  10 kB     00:00    
(83/153): jansson-2.13.1-7.fc39.aarch64.rpm      10 MB/s |  46 kB     00:00    
(84/153): keyutils-libs-1.6.1-7.fc39.aarch64.rp  15 MB/s |  31 kB     00:00    
(85/153): libacl-2.3.1-9.fc40.aarch64.rpm        10 MB/s |  23 kB     00:00    
(86/153): libattr-2.5.1-9.fc40.aarch64.rpm      7.5 MB/s |  18 kB     00:00    
(87/153): libbrotli-1.1.0-1.fc40.aarch64.rpm     33 MB/s | 344 kB     00:00    
(88/153): libcap-2.48-7.fc39.aarch64.rpm        3.1 MB/s |  68 kB     00:00    
(89/153): libcap-ng-0.8.3-8.fc40.aarch64.rpm     11 MB/s |  32 kB     00:00    
(90/153): libcom_err-1.47.0-2.fc39.aarch64.rpm  7.8 MB/s |  26 kB     00:00    
(91/153): libeconf-0.5.2-1.fc40.aarch64.rpm      11 MB/s |  30 kB     00:00    
(92/153): krb5-libs-1.21.2-1.fc40.aarch64.rpm    14 MB/s | 772 kB     00:00    
(93/153): libevent-2.1.12-9.fc39.aarch64.rpm     32 MB/s | 254 kB     00:00    
(94/153): libffi-3.4.4-4.fc39.aarch64.rpm       9.5 MB/s |  38 kB     00:00    
(95/153): libidn2-2.3.4-3.fc39.aarch64.rpm       27 MB/s | 118 kB     00:00    
(96/153): libnsl2-2.0.0-6.fc39.aarch64.rpm      8.0 MB/s |  30 kB     00:00    
(97/153): libpkgconf-1.9.5-2.fc39.aarch64.rpm    12 MB/s |  38 kB     00:00    
(98/153): libpsl-0.21.2-4.fc39.aarch64.rpm       17 MB/s |  63 kB     00:00    
(99/153): libpwquality-1.4.5-6.fc39.aarch64.rpm  23 MB/s | 120 kB     00:00    
(100/153): libselinux-3.5-5.fc39.aarch64.rpm     18 MB/s |  86 kB     00:00    
(101/153): libsemanage-3.5-4.fc39.aarch64.rpm    26 MB/s | 117 kB     00:00    
(102/153): libsepol-3.5-2.fc39.aarch64.rpm       40 MB/s | 311 kB     00:00    
(103/153): libsigsegv-2.14-5.fc39.aarch64.rpm   8.0 MB/s |  27 kB     00:00    
(104/153): libtasn1-4.19.0-3.fc39.aarch64.rpm    23 MB/s |  73 kB     00:00    
(105/153): libtirpc-1.3.3-1.rc2.fc39.aarch64.rp  16 MB/s |  95 kB     00:00    
(106/153): libutempter-1.2.1-10.fc39.aarch64.rp  13 MB/s |  27 kB     00:00    
(107/153): libverto-0.3.2-6.fc39.aarch64.rpm    7.7 MB/s |  21 kB     00:00    
(108/153): libunistring-1.1-5.fc40.aarch64.rpm   41 MB/s | 540 kB     00:00    
(109/153): libxcrypt-4.4.36-2.fc39.aarch64.rpm   23 MB/s | 123 kB     00:00    
(110/153): lua-srpm-macros-1-9.fc39.noarch.rpm  3.2 MB/s | 8.6 kB     00:00    
(111/153): lz4-libs-1.9.4-4.fc39.aarch64.rpm     21 MB/s |  68 kB     00:00    
(112/153): lua-libs-5.4.6-3.fc39.aarch64.rpm     14 MB/s | 131 kB     00:00    
(113/153): ncurses-base-6.4-7.20230520.fc40.noa  16 MB/s |  88 kB     00:00    
(114/153): mpfr-4.2.0-3.fc39.aarch64.rpm         25 MB/s | 319 kB     00:00    
(115/153): ncurses-libs-6.4-7.20230520.fc40.aar  41 MB/s | 326 kB     00:00    
(116/153): ocaml-srpm-macros-8-2.fc39.noarch.rp 5.8 MB/s |  14 kB     00:00    
(117/153): openblas-srpm-macros-2-14.fc39.noarc 4.4 MB/s | 7.5 kB     00:00    
(118/153): gdb-minimal-13.2-8.fc40.aarch64.rpm   19 MB/s | 3.8 MB     00:00    
(119/153): openldap-2.6.6-1.fc39.aarch64.rpm     17 MB/s | 251 kB     00:00    
(120/153): package-notes-srpm-macros-0.5-9.fc39 5.8 MB/s |  11 kB     00:00    
(121/153): p11-kit-trust-0.25.0-2.fc39.aarch64.  28 MB/s | 140 kB     00:00    
(122/153): p11-kit-0.25.0-2.fc39.aarch64.rpm     21 MB/s | 481 kB     00:00    
(123/153): pam-libs-1.5.3-2.fc39.aarch64.rpm     11 MB/s |  58 kB     00:00    
(124/153): patch-2.7.6-22.fc39.aarch64.rpm       27 MB/s | 123 kB     00:00    
(125/153): pcre2-syntax-10.42-1.fc39.2.noarch.r  21 MB/s | 143 kB     00:00    
(126/153): perl-srpm-macros-1-51.fc39.noarch.rp 2.8 MB/s | 8.0 kB     00:00    
(127/153): pam-1.5.3-2.fc39.aarch64.rpm          24 MB/s | 558 kB     00:00    
(128/153): pcre2-10.42-1.fc39.2.aarch64.rpm      13 MB/s | 219 kB     00:00    
(129/153): pkgconf-1.9.5-2.fc39.aarch64.rpm      15 MB/s |  42 kB     00:00    
(130/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm   5.1 MB/s |  14 kB     00:00    
(131/153): pkgconf-pkg-config-1.9.5-2.fc39.aarc 3.1 MB/s | 9.6 kB     00:00    
(132/153): popt-1.19-3.fc39.aarch64.rpm          19 MB/s |  66 kB     00:00    
(133/153): publicsuffix-list-dafsa-20230812-1.f  17 MB/s |  57 kB     00:00    
(134/153): pyproject-srpm-macros-1.9.0-2.fc39.n 4.1 MB/s |  14 kB     00:00    
(135/153): python-srpm-macros-3.12-4.fc40.noarc 9.2 MB/s |  25 kB     00:00    
(136/153): qt5-srpm-macros-5.15.10-2.fc39.noarc 4.1 MB/s | 8.3 kB     00:00    
(137/153): qt6-srpm-macros-6.5.2-2.fc39.noarch. 4.0 MB/s | 9.2 kB     00:00    
(138/153): rust-srpm-macros-24-5.fc40.noarch.rp 4.3 MB/s |  12 kB     00:00    
(139/153): readline-8.2-4.fc39.aarch64.rpm       17 MB/s | 211 kB     00:00    
(140/153): sed-4.8-14.fc39.aarch64.rpm           34 MB/s | 304 kB     00:00    
(141/153): rpm-sequoia-1.5.0-1.fc40.aarch64.rpm  48 MB/s | 842 kB     00:00    
(142/153): setup-2.14.4-1.fc39.noarch.rpm        12 MB/s | 154 kB     00:00    
(143/153): sqlite-libs-3.43.1-1.fc40.aarch64.rp  36 MB/s | 679 kB     00:00    
(144/153): systemd-libs-254.1-2.fc40.aarch64.rp  38 MB/s | 668 kB     00:00    
(145/153): shadow-utils-4.14.0-1.fc40.aarch64.r  31 MB/s | 1.3 MB     00:00    
(146/153): tar-1.35-2.fc40.aarch64.rpm           43 MB/s | 854 kB     00:00    
(147/153): unzip-6.0-62.fc39.aarch64.rpm         27 MB/s | 183 kB     00:00    
(148/153): tzdata-2023c-3.fc40.noarch.rpm        38 MB/s | 718 kB     00:00    
(149/153): which-2.21-40.fc39.aarch64.rpm       3.4 MB/s |  42 kB     00:00    
(150/153): xxhash-libs-0.8.2-1.fc39.aarch64.rpm 3.8 MB/s |  35 kB     00:00    
(151/153): xz-libs-5.4.4-1.fc39.aarch64.rpm      17 MB/s | 106 kB     00:00    
(152/153): zip-3.0-38.fc39.aarch64.rpm           18 MB/s | 262 kB     00:00    
(153/153): xz-5.4.4-1.fc39.aarch64.rpm           20 MB/s | 556 kB     00:00    
--------------------------------------------------------------------------------
Total                                            73 MB/s |  53 MB     00:00     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x18B8E74C:
 Userid     : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
 Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-6.fc39.aarch64                         1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.2.1-1.fc40.aarch64                         1/153 
  Running scriptlet: libgcc-13.2.1-1.fc40.aarch64                         1/153 
  Installing       : crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/153 
  Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/153 
  Installing       : tzdata-2023c-3.fc40.noarch                           3/153 
  Installing       : fedora-release-identity-basic-40-0.7.noarch          4/153 
  Installing       : fedora-repos-rawhide-40-0.1.noarch                   5/153 
  Installing       : fedora-gpg-keys-40-0.1.noarch                        6/153 
  Installing       : fedora-repos-40-0.1.noarch                           7/153 
  Installing       : fedora-release-common-40-0.7.noarch                  8/153 
  Installing       : fedora-release-40-0.7.noarch                         9/153 
  Installing       : setup-2.14.4-1.fc39.noarch                          10/153 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.4-1.fc39.noarch                          10/153 
  Installing       : filesystem-3.18-6.fc39.aarch64                      11/153 
  Installing       : basesystem-11-18.fc39.noarch                        12/153 
  Installing       : rust-srpm-macros-24-5.fc40.noarch                   13/153 
  Installing       : qt6-srpm-macros-6.5.2-2.fc39.noarch                 14/153 
  Installing       : qt5-srpm-macros-5.15.10-2.fc39.noarch               15/153 
  Installing       : pyproject-srpm-macros-1.9.0-2.fc39.noarch           16/153 
  Installing       : publicsuffix-list-dafsa-20230812-1.fc40.noarch      17/153 
  Installing       : pkgconf-m4-1.9.5-2.fc39.noarch                      18/153 
  Installing       : perl-srpm-macros-1-51.fc39.noarch                   19/153 
  Installing       : pcre2-syntax-10.42-1.fc39.2.noarch                  20/153 
  Installing       : package-notes-srpm-macros-0.5-9.fc39.noarch         21/153 
  Installing       : openblas-srpm-macros-2-14.fc39.noarch               22/153 
  Installing       : ocaml-srpm-macros-8-2.fc39.noarch                   23/153 
  Installing       : ncurses-base-6.4-7.20230520.fc40.noarch             24/153 
  Installing       : glibc-gconv-extra-2.38.9000-8.fc40.aarch64          25/153 
  Running scriptlet: glibc-gconv-extra-2.38.9000-8.fc40.aarch64          25/153 
  Installing       : glibc-minimal-langpack-2.38.9000-8.fc40.aarch64     26/153 
  Installing       : glibc-common-2.38.9000-8.fc40.aarch64               27/153 
  Running scriptlet: glibc-2.38.9000-8.fc40.aarch64                      28/153 
  Installing       : glibc-2.38.9000-8.fc40.aarch64                      28/153 
  Running scriptlet: glibc-2.38.9000-8.fc40.aarch64                      28/153 
  Installing       : ncurses-libs-6.4-7.20230520.fc40.aarch64            29/153 
  Installing       : bash-5.2.15-5.fc39.aarch64                          30/153 
  Running scriptlet: bash-5.2.15-5.fc39.aarch64                          30/153 
  Installing       : zlib-ng-compat-2.1.3-3.fc40.aarch64                 31/153 
  Installing       : xz-libs-5.4.4-1.fc39.aarch64                        32/153 
  Installing       : bzip2-libs-1.0.8-16.fc39.aarch64                    33/153 
  Installing       : libstdc++-13.2.1-1.fc40.aarch64                     34/153 
  Installing       : libuuid-2.39.2-1.fc40.aarch64                       35/153 
  Installing       : libzstd-1.5.5-4.fc40.aarch64                        36/153 
  Installing       : elfutils-libelf-0.189-6.fc40.aarch64                37/153 
  Installing       : popt-1.19-3.fc39.aarch64                            38/153 
  Installing       : libblkid-2.39.2-1.fc40.aarch64                      39/153 
  Installing       : readline-8.2-4.fc39.aarch64                         40/153 
  Installing       : gmp-1:6.2.1-5.fc39.aarch64                          41/153 
  Installing       : libattr-2.5.1-9.fc40.aarch64                        42/153 
  Installing       : libacl-2.3.1-9.fc40.aarch64                         43/153 
  Installing       : libcap-2.48-7.fc39.aarch64                          44/153 
  Installing       : libxcrypt-4.4.36-2.fc39.aarch64                     45/153 
  Installing       : lz4-libs-1.9.4-4.fc39.aarch64                       46/153 
  Installing       : systemd-libs-254.1-2.fc40.aarch64                   47/153 
  Installing       : mpfr-4.2.0-3.fc39.aarch64                           48/153 
  Installing       : dwz-0.15-3.fc39.aarch64                             49/153 
  Installing       : unzip-6.0-62.fc39.aarch64                           50/153 
  Installing       : file-libs-5.45-1.fc40.aarch64                       51/153 
  Installing       : file-5.45-1.fc40.aarch64                            52/153 
  Installing       : libsmartcols-2.39.2-1.fc40.aarch64                  53/153 
  Installing       : alternatives-1.25-1.fc39.aarch64                    54/153 
  Installing       : jansson-2.13.1-7.fc39.aarch64                       55/153 
  Installing       : libcap-ng-0.8.3-8.fc40.aarch64                      56/153 
  Installing       : audit-libs-3.1.2-4.fc40.aarch64                     57/153 
  Installing       : pam-libs-1.5.3-2.fc39.aarch64                       58/153 
  Installing       : libcom_err-1.47.0-2.fc39.aarch64                    59/153 
  Installing       : libsepol-3.5-2.fc39.aarch64                         60/153 
  Installing       : libunistring-1.1-5.fc40.aarch64                     61/153 
  Installing       : libidn2-2.3.4-3.fc39.aarch64                        62/153 
  Installing       : lua-libs-5.4.6-3.fc39.aarch64                       63/153 
  Installing       : pcre2-10.42-1.fc39.2.aarch64                        64/153 
  Installing       : libselinux-3.5-5.fc39.aarch64                       65/153 
  Installing       : sed-4.8-14.fc39.aarch64                             66/153 
  Installing       : grep-3.11-5.fc40.aarch64                            67/153 
  Installing       : findutils-1:4.9.0-6.fc40.aarch64                    68/153 
  Installing       : xz-5.4.4-1.fc39.aarch64                             69/153 
  Installing       : libmount-2.39.2-1.fc40.aarch64                      70/153 
  Installing       : util-linux-core-2.39.2-1.fc40.aarch64               71/153 
  Installing       : libsemanage-3.5-4.fc39.aarch64                      72/153 
  Installing       : tar-2:1.35-2.fc40.aarch64                           73/153 
  Installing       : libpsl-0.21.2-4.fc39.aarch64                        74/153 
  Installing       : zip-3.0-38.fc39.aarch64                             75/153 
  Installing       : zstd-1.5.5-4.fc40.aarch64                           76/153 
  Installing       : libfdisk-2.39.2-1.fc40.aarch64                      77/153 
  Installing       : bzip2-1.0.8-16.fc39.aarch64                         78/153 
  Installing       : libxml2-2.11.5-1.fc40.aarch64                       79/153 
  Installing       : sqlite-libs-3.43.1-1.fc40.aarch64                   80/153 
  Installing       : ed-1.19-4.fc39.aarch64                              81/153 
  Installing       : patch-2.7.6-22.fc39.aarch64                         82/153 
  Installing       : elfutils-default-yama-scope-0.189-6.fc40.noarch     83/153 
  Running scriptlet: elfutils-default-yama-scope-0.189-6.fc40.noarch     83/153 
  Installing       : libdb-5.3.28-58.fc40.aarch64                        84/153 
  Installing       : libgomp-13.2.1-1.fc40.aarch64                       85/153 
  Installing       : libnghttp2-1.56.0-1.fc40.aarch64                    86/153 
  Installing       : cpio-2.14-4.fc39.aarch64                            87/153 
  Installing       : diffutils-3.10-3.fc39.aarch64                       88/153 
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  Installing       : cyrus-sasl-lib-2.1.28-11.fc40.aarch64               90/153 
  Installing       : keyutils-libs-1.6.1-7.fc39.aarch64                  91/153 
  Installing       : libbrotli-1.1.0-1.fc40.aarch64                      92/153 
  Installing       : libeconf-0.5.2-1.fc40.aarch64                       93/153 
  Installing       : shadow-utils-2:4.14.0-1.fc40.aarch64                94/153 
  Running scriptlet: libutempter-1.2.1-10.fc39.aarch64                   95/153 
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  Installing       : libffi-3.4.4-4.fc39.aarch64                         96/153 
  Installing       : p11-kit-0.25.0-2.fc39.aarch64                       97/153 
  Installing       : libpkgconf-1.9.5-2.fc39.aarch64                     98/153 
  Installing       : pkgconf-1.9.5-2.fc39.aarch64                        99/153 
  Installing       : pkgconf-pkg-config-1.9.5-2.fc39.aarch64            100/153 
  Installing       : libsigsegv-2.14-5.fc39.aarch64                     101/153 
  Installing       : gawk-5.2.2-2.fc39.aarch64                          102/153 
  Installing       : libtasn1-4.19.0-3.fc39.aarch64                     103/153 
  Installing       : p11-kit-trust-0.25.0-2.fc39.aarch64                104/153 
  Running scriptlet: p11-kit-trust-0.25.0-2.fc39.aarch64                104/153 
  Installing       : libverto-0.3.2-6.fc39.aarch64                      105/153 
  Installing       : xxhash-libs-0.8.2-1.fc39.aarch64                   106/153 
  Installing       : kernel-srpm-macros-1.0-20.fc39.noarch              107/153 
  Installing       : gnat-srpm-macros-6-3.fc39.noarch                   108/153 
  Installing       : ghc-srpm-macros-1.6.1-2.fc39.noarch                109/153 
  Installing       : fpc-srpm-macros-1.3-8.fc39.noarch                  110/153 
  Installing       : coreutils-common-9.4-1.fc40.aarch64                111/153 
  Installing       : openssl-libs-1:3.1.1-4.fc40.aarch64                112/153 
  Installing       : coreutils-9.4-1.fc40.aarch64                       113/153 
  Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch   114/153 
  Installing       : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch   114/153 
  Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch   114/153 
  Installing       : krb5-libs-1.21.2-1.fc40.aarch64                    115/153 
  Installing       : libtirpc-1.3.3-1.rc2.fc39.aarch64                  116/153 
  Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64               117/153 
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  Installing       : gzip-1.12-6.fc39.aarch64                           118/153 
  Installing       : cracklib-2.9.11-2.fc40.aarch64                     119/153 
  Installing       : libpwquality-1.4.5-6.fc39.aarch64                  120/153 
  Installing       : authselect-1.4.2-3.fc39.aarch64                    121/153 
  Installing       : libnsl2-2.0.0-6.fc39.aarch64                       122/153 
  Installing       : pam-1.5.3-2.fc39.aarch64                           123/153 
  Installing       : libarchive-3.7.2-1.fc40.aarch64                    124/153 
  Installing       : libevent-2.1.12-9.fc39.aarch64                     125/153 
  Installing       : openldap-2.6.6-1.fc39.aarch64                      126/153 
  Installing       : rpm-sequoia-1.5.0-1.fc40.aarch64                   127/153 
  Installing       : rpm-libs-4.18.99-1.fc40.aarch64                    128/153 
  Installing       : ansible-srpm-macros-1-11.fc39.noarch               129/153 
  Installing       : libssh-config-0.10.5-2.fc40.noarch                 130/153 
  Installing       : libssh-0.10.5-2.fc40.aarch64                       131/153 
  Installing       : libcurl-8.3.0-1.fc40.aarch64                       132/153 
  Installing       : elfutils-libs-0.189-6.fc40.aarch64                 133/153 
  Installing       : elfutils-debuginfod-client-0.189-6.fc40.aarch64    134/153 
  Installing       : binutils-gold-2.41-5.fc40.aarch64                  135/153 
  Running scriptlet: binutils-gold-2.41-5.fc40.aarch64                  135/153 
  Installing       : binutils-2.41-5.fc40.aarch64                       136/153 
  Running scriptlet: binutils-2.41-5.fc40.aarch64                       136/153 
  Installing       : elfutils-0.189-6.fc40.aarch64                      137/153 
  Installing       : gdb-minimal-13.2-8.fc40.aarch64                    138/153 
  Installing       : debugedit-5.0-10.fc39.aarch64                      139/153 
  Installing       : rpm-build-libs-4.18.99-1.fc40.aarch64              140/153 
  Installing       : curl-8.3.0-1.fc40.aarch64                          141/153 
  Running scriptlet: rpm-4.18.99-1.fc40.aarch64                         142/153 
  Installing       : rpm-4.18.99-1.fc40.aarch64                         142/153 
  Installing       : efi-srpm-macros-5-9.fc39.noarch                    143/153 
  Installing       : lua-srpm-macros-1-9.fc39.noarch                    144/153 
  Installing       : fonts-srpm-macros-1:2.0.5-12.fc39.noarch           145/153 
  Installing       : forge-srpm-macros-0.1.0-1.fc40.noarch              146/153 
  Installing       : go-srpm-macros-3.2.0-7.fc40.noarch                 147/153 
  Installing       : python-srpm-macros-3.12-4.fc40.noarch              148/153 
  Installing       : redhat-rpm-config-270-1.fc40.noarch                149/153 
  Installing       : rpm-build-4.18.99-1.fc40.aarch64                   150/153 
  Installing       : util-linux-2.39.2-1.fc40.aarch64                   151/153 
  Installing       : which-2.21-40.fc39.aarch64                         152/153 
  Installing       : info-7.0.3-3.fc39.aarch64                          153/153 
  Running scriptlet: filesystem-3.18-6.fc39.aarch64                     153/153 
  Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch   153/153 
  Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64               153/153 
  Running scriptlet: rpm-4.18.99-1.fc40.aarch64                         153/153 
  Running scriptlet: info-7.0.3-3.fc39.aarch64                          153/153 
  Verifying        : cracklib-2.9.11-2.fc40.aarch64                       1/153 
  Verifying        : curl-8.3.0-1.fc40.aarch64                            2/153 
  Verifying        : cyrus-sasl-lib-2.1.28-11.fc40.aarch64                3/153 
  Verifying        : file-5.45-1.fc40.aarch64                             4/153 
  Verifying        : file-libs-5.45-1.fc40.aarch64                        5/153 
  Verifying        : glibc-2.38.9000-8.fc40.aarch64                       6/153 
  Verifying        : glibc-common-2.38.9000-8.fc40.aarch64                7/153 
  Verifying        : glibc-gconv-extra-2.38.9000-8.fc40.aarch64           8/153 
  Verifying        : glibc-minimal-langpack-2.38.9000-8.fc40.aarch64      9/153 
  Verifying        : libarchive-3.7.2-1.fc40.aarch64                     10/153 
  Verifying        : libblkid-2.39.2-1.fc40.aarch64                      11/153 
  Verifying        : libcurl-8.3.0-1.fc40.aarch64                        12/153 
  Verifying        : libdb-5.3.28-58.fc40.aarch64                        13/153 
  Verifying        : libfdisk-2.39.2-1.fc40.aarch64                      14/153 
  Verifying        : libgcc-13.2.1-1.fc40.aarch64                        15/153 
  Verifying        : libgomp-13.2.1-1.fc40.aarch64                       16/153 
  Verifying        : libmount-2.39.2-1.fc40.aarch64                      17/153 
  Verifying        : libnghttp2-1.56.0-1.fc40.aarch64                    18/153 
  Verifying        : libsmartcols-2.39.2-1.fc40.aarch64                  19/153 
  Verifying        : libssh-0.10.5-2.fc40.aarch64                        20/153 
  Verifying        : libssh-config-0.10.5-2.fc40.noarch                  21/153 
  Verifying        : libstdc++-13.2.1-1.fc40.aarch64                     22/153 
  Verifying        : libuuid-2.39.2-1.fc40.aarch64                       23/153 
  Verifying        : libxml2-2.11.5-1.fc40.aarch64                       24/153 
  Verifying        : libzstd-1.5.5-4.fc40.aarch64                        25/153 
  Verifying        : openssl-libs-1:3.1.1-4.fc40.aarch64                 26/153 
  Verifying        : redhat-rpm-config-270-1.fc40.noarch                 27/153 
  Verifying        : rpm-4.18.99-1.fc40.aarch64                          28/153 
  Verifying        : rpm-build-4.18.99-1.fc40.aarch64                    29/153 
  Verifying        : rpm-build-libs-4.18.99-1.fc40.aarch64               30/153 
  Verifying        : rpm-libs-4.18.99-1.fc40.aarch64                     31/153 
  Verifying        : util-linux-2.39.2-1.fc40.aarch64                    32/153 
  Verifying        : util-linux-core-2.39.2-1.fc40.aarch64               33/153 
  Verifying        : zlib-ng-compat-2.1.3-3.fc40.aarch64                 34/153 
  Verifying        : zstd-1.5.5-4.fc40.aarch64                           35/153 
  Verifying        : alternatives-1.25-1.fc39.aarch64                    36/153 
  Verifying        : ansible-srpm-macros-1-11.fc39.noarch                37/153 
  Verifying        : audit-libs-3.1.2-4.fc40.aarch64                     38/153 
  Verifying        : authselect-1.4.2-3.fc39.aarch64                     39/153 
  Verifying        : authselect-libs-1.4.2-3.fc39.aarch64                40/153 
  Verifying        : basesystem-11-18.fc39.noarch                        41/153 
  Verifying        : bash-5.2.15-5.fc39.aarch64                          42/153 
  Verifying        : binutils-2.41-5.fc40.aarch64                        43/153 
  Verifying        : binutils-gold-2.41-5.fc40.aarch64                   44/153 
  Verifying        : bzip2-1.0.8-16.fc39.aarch64                         45/153 
  Verifying        : bzip2-libs-1.0.8-16.fc39.aarch64                    46/153 
  Verifying        : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch    47/153 
  Verifying        : coreutils-9.4-1.fc40.aarch64                        48/153 
  Verifying        : coreutils-common-9.4-1.fc40.aarch64                 49/153 
  Verifying        : cpio-2.14-4.fc39.aarch64                            50/153 
  Verifying        : crypto-policies-20230731-1.git5ed06e0.fc39.noarc    51/153 
  Verifying        : debugedit-5.0-10.fc39.aarch64                       52/153 
  Verifying        : diffutils-3.10-3.fc39.aarch64                       53/153 
  Verifying        : dwz-0.15-3.fc39.aarch64                             54/153 
  Verifying        : ed-1.19-4.fc39.aarch64                              55/153 
  Verifying        : efi-srpm-macros-5-9.fc39.noarch                     56/153 
  Verifying        : elfutils-0.189-6.fc40.aarch64                       57/153 
  Verifying        : elfutils-debuginfod-client-0.189-6.fc40.aarch64     58/153 
  Verifying        : elfutils-default-yama-scope-0.189-6.fc40.noarch     59/153 
  Verifying        : elfutils-libelf-0.189-6.fc40.aarch64                60/153 
  Verifying        : elfutils-libs-0.189-6.fc40.aarch64                  61/153 
  Verifying        : fedora-gpg-keys-40-0.1.noarch                       62/153 
  Verifying        : fedora-release-40-0.7.noarch                        63/153 
  Verifying        : fedora-release-common-40-0.7.noarch                 64/153 
  Verifying        : fedora-release-identity-basic-40-0.7.noarch         65/153 
  Verifying        : fedora-repos-40-0.1.noarch                          66/153 
  Verifying        : fedora-repos-rawhide-40-0.1.noarch                  67/153 
  Verifying        : filesystem-3.18-6.fc39.aarch64                      68/153 
  Verifying        : findutils-1:4.9.0-6.fc40.aarch64                    69/153 
  Verifying        : fonts-srpm-macros-1:2.0.5-12.fc39.noarch            70/153 
  Verifying        : forge-srpm-macros-0.1.0-1.fc40.noarch               71/153 
  Verifying        : fpc-srpm-macros-1.3-8.fc39.noarch                   72/153 
  Verifying        : gawk-5.2.2-2.fc39.aarch64                           73/153 
  Verifying        : gdb-minimal-13.2-8.fc40.aarch64                     74/153 
  Verifying        : gdbm-libs-1:1.23-4.fc39.aarch64                     75/153 
  Verifying        : ghc-srpm-macros-1.6.1-2.fc39.noarch                 76/153 
  Verifying        : gmp-1:6.2.1-5.fc39.aarch64                          77/153 
  Verifying        : gnat-srpm-macros-6-3.fc39.noarch                    78/153 
  Verifying        : go-srpm-macros-3.2.0-7.fc40.noarch                  79/153 
  Verifying        : grep-3.11-5.fc40.aarch64                            80/153 
  Verifying        : gzip-1.12-6.fc39.aarch64                            81/153 
  Verifying        : info-7.0.3-3.fc39.aarch64                           82/153 
  Verifying        : jansson-2.13.1-7.fc39.aarch64                       83/153 
  Verifying        : kernel-srpm-macros-1.0-20.fc39.noarch               84/153 
  Verifying        : keyutils-libs-1.6.1-7.fc39.aarch64                  85/153 
  Verifying        : krb5-libs-1.21.2-1.fc40.aarch64                     86/153 
  Verifying        : libacl-2.3.1-9.fc40.aarch64                         87/153 
  Verifying        : libattr-2.5.1-9.fc40.aarch64                        88/153 
  Verifying        : libbrotli-1.1.0-1.fc40.aarch64                      89/153 
  Verifying        : libcap-2.48-7.fc39.aarch64                          90/153 
  Verifying        : libcap-ng-0.8.3-8.fc40.aarch64                      91/153 
  Verifying        : libcom_err-1.47.0-2.fc39.aarch64                    92/153 
  Verifying        : libeconf-0.5.2-1.fc40.aarch64                       93/153 
  Verifying        : libevent-2.1.12-9.fc39.aarch64                      94/153 
  Verifying        : libffi-3.4.4-4.fc39.aarch64                         95/153 
  Verifying        : libidn2-2.3.4-3.fc39.aarch64                        96/153 
  Verifying        : libnsl2-2.0.0-6.fc39.aarch64                        97/153 
  Verifying        : libpkgconf-1.9.5-2.fc39.aarch64                     98/153 
  Verifying        : libpsl-0.21.2-4.fc39.aarch64                        99/153 
  Verifying        : libpwquality-1.4.5-6.fc39.aarch64                  100/153 
  Verifying        : libselinux-3.5-5.fc39.aarch64                      101/153 
  Verifying        : libsemanage-3.5-4.fc39.aarch64                     102/153 
  Verifying        : libsepol-3.5-2.fc39.aarch64                        103/153 
  Verifying        : libsigsegv-2.14-5.fc39.aarch64                     104/153 
  Verifying        : libtasn1-4.19.0-3.fc39.aarch64                     105/153 
  Verifying        : libtirpc-1.3.3-1.rc2.fc39.aarch64                  106/153 
  Verifying        : libunistring-1.1-5.fc40.aarch64                    107/153 
  Verifying        : libutempter-1.2.1-10.fc39.aarch64                  108/153 
  Verifying        : libverto-0.3.2-6.fc39.aarch64                      109/153 
  Verifying        : libxcrypt-4.4.36-2.fc39.aarch64                    110/153 
  Verifying        : lua-libs-5.4.6-3.fc39.aarch64                      111/153 
  Verifying        : lua-srpm-macros-1-9.fc39.noarch                    112/153 
  Verifying        : lz4-libs-1.9.4-4.fc39.aarch64                      113/153 
  Verifying        : mpfr-4.2.0-3.fc39.aarch64                          114/153 
  Verifying        : ncurses-base-6.4-7.20230520.fc40.noarch            115/153 
  Verifying        : ncurses-libs-6.4-7.20230520.fc40.aarch64           116/153 
  Verifying        : ocaml-srpm-macros-8-2.fc39.noarch                  117/153 
  Verifying        : openblas-srpm-macros-2-14.fc39.noarch              118/153 
  Verifying        : openldap-2.6.6-1.fc39.aarch64                      119/153 
  Verifying        : p11-kit-0.25.0-2.fc39.aarch64                      120/153 
  Verifying        : p11-kit-trust-0.25.0-2.fc39.aarch64                121/153 
  Verifying        : package-notes-srpm-macros-0.5-9.fc39.noarch        122/153 
  Verifying        : pam-1.5.3-2.fc39.aarch64                           123/153 
  Verifying        : pam-libs-1.5.3-2.fc39.aarch64                      124/153 
  Verifying        : patch-2.7.6-22.fc39.aarch64                        125/153 
  Verifying        : pcre2-10.42-1.fc39.2.aarch64                       126/153 
  Verifying        : pcre2-syntax-10.42-1.fc39.2.noarch                 127/153 
  Verifying        : perl-srpm-macros-1-51.fc39.noarch                  128/153 
  Verifying        : pkgconf-1.9.5-2.fc39.aarch64                       129/153 
  Verifying        : pkgconf-m4-1.9.5-2.fc39.noarch                     130/153 
  Verifying        : pkgconf-pkg-config-1.9.5-2.fc39.aarch64            131/153 
  Verifying        : popt-1.19-3.fc39.aarch64                           132/153 
  Verifying        : publicsuffix-list-dafsa-20230812-1.fc40.noarch     133/153 
  Verifying        : pyproject-srpm-macros-1.9.0-2.fc39.noarch          134/153 
  Verifying        : python-srpm-macros-3.12-4.fc40.noarch              135/153 
  Verifying        : qt5-srpm-macros-5.15.10-2.fc39.noarch              136/153 
  Verifying        : qt6-srpm-macros-6.5.2-2.fc39.noarch                137/153 
  Verifying        : readline-8.2-4.fc39.aarch64                        138/153 
  Verifying        : rpm-sequoia-1.5.0-1.fc40.aarch64                   139/153 
  Verifying        : rust-srpm-macros-24-5.fc40.noarch                  140/153 
  Verifying        : sed-4.8-14.fc39.aarch64                            141/153 
  Verifying        : setup-2.14.4-1.fc39.noarch                         142/153 
  Verifying        : shadow-utils-2:4.14.0-1.fc40.aarch64               143/153 
  Verifying        : sqlite-libs-3.43.1-1.fc40.aarch64                  144/153 
  Verifying        : systemd-libs-254.1-2.fc40.aarch64                  145/153 
  Verifying        : tar-2:1.35-2.fc40.aarch64                          146/153 
  Verifying        : tzdata-2023c-3.fc40.noarch                         147/153 
  Verifying        : unzip-6.0-62.fc39.aarch64                          148/153 
  Verifying        : which-2.21-40.fc39.aarch64                         149/153 
  Verifying        : xxhash-libs-0.8.2-1.fc39.aarch64                   150/153 
  Verifying        : xz-5.4.4-1.fc39.aarch64                            151/153 
  Verifying        : xz-libs-5.4.4-1.fc39.aarch64                       152/153 
  Verifying        : zip-3.0-38.fc39.aarch64                            153/153 

Installed:
  alternatives-1.25-1.fc39.aarch64                                              
  ansible-srpm-macros-1-11.fc39.noarch                                          
  audit-libs-3.1.2-4.fc40.aarch64                                               
  authselect-1.4.2-3.fc39.aarch64                                               
  authselect-libs-1.4.2-3.fc39.aarch64                                          
  basesystem-11-18.fc39.noarch                                                  
  bash-5.2.15-5.fc39.aarch64                                                    
  binutils-2.41-5.fc40.aarch64                                                  
  binutils-gold-2.41-5.fc40.aarch64                                             
  bzip2-1.0.8-16.fc39.aarch64                                                   
  bzip2-libs-1.0.8-16.fc39.aarch64                                              
  ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch                              
  coreutils-9.4-1.fc40.aarch64                                                  
  coreutils-common-9.4-1.fc40.aarch64                                           
  cpio-2.14-4.fc39.aarch64                                                      
  cracklib-2.9.11-2.fc40.aarch64                                                
  crypto-policies-20230731-1.git5ed06e0.fc39.noarch                             
  curl-8.3.0-1.fc40.aarch64                                                     
  cyrus-sasl-lib-2.1.28-11.fc40.aarch64                                         
  debugedit-5.0-10.fc39.aarch64                                                 
  diffutils-3.10-3.fc39.aarch64                                                 
  dwz-0.15-3.fc39.aarch64                                                       
  ed-1.19-4.fc39.aarch64                                                        
  efi-srpm-macros-5-9.fc39.noarch                                               
  elfutils-0.189-6.fc40.aarch64                                                 
  elfutils-debuginfod-client-0.189-6.fc40.aarch64                               
  elfutils-default-yama-scope-0.189-6.fc40.noarch                               
  elfutils-libelf-0.189-6.fc40.aarch64                                          
  elfutils-libs-0.189-6.fc40.aarch64                                            
  fedora-gpg-keys-40-0.1.noarch                                                 
  fedora-release-40-0.7.noarch                                                  
  fedora-release-common-40-0.7.noarch                                           
  fedora-release-identity-basic-40-0.7.noarch                                   
  fedora-repos-40-0.1.noarch                                                    
  fedora-repos-rawhide-40-0.1.noarch                                            
  file-5.45-1.fc40.aarch64                                                      
  file-libs-5.45-1.fc40.aarch64                                                 
  filesystem-3.18-6.fc39.aarch64                                                
  findutils-1:4.9.0-6.fc40.aarch64                                              
  fonts-srpm-macros-1:2.0.5-12.fc39.noarch                                      
  forge-srpm-macros-0.1.0-1.fc40.noarch                                         
  fpc-srpm-macros-1.3-8.fc39.noarch                                             
  gawk-5.2.2-2.fc39.aarch64                                                     
  gdb-minimal-13.2-8.fc40.aarch64                                               
  gdbm-libs-1:1.23-4.fc39.aarch64                                               
  ghc-srpm-macros-1.6.1-2.fc39.noarch                                           
  glibc-2.38.9000-8.fc40.aarch64                                                
  glibc-common-2.38.9000-8.fc40.aarch64                                         
  glibc-gconv-extra-2.38.9000-8.fc40.aarch64                                    
  glibc-minimal-langpack-2.38.9000-8.fc40.aarch64                               
  gmp-1:6.2.1-5.fc39.aarch64                                                    
  gnat-srpm-macros-6-3.fc39.noarch                                              
  go-srpm-macros-3.2.0-7.fc40.noarch                                            
  grep-3.11-5.fc40.aarch64                                                      
  gzip-1.12-6.fc39.aarch64                                                      
  info-7.0.3-3.fc39.aarch64                                                     
  jansson-2.13.1-7.fc39.aarch64                                                 
  kernel-srpm-macros-1.0-20.fc39.noarch                                         
  keyutils-libs-1.6.1-7.fc39.aarch64                                            
  krb5-libs-1.21.2-1.fc40.aarch64                                               
  libacl-2.3.1-9.fc40.aarch64                                                   
  libarchive-3.7.2-1.fc40.aarch64                                               
  libattr-2.5.1-9.fc40.aarch64                                                  
  libblkid-2.39.2-1.fc40.aarch64                                                
  libbrotli-1.1.0-1.fc40.aarch64                                                
  libcap-2.48-7.fc39.aarch64                                                    
  libcap-ng-0.8.3-8.fc40.aarch64                                                
  libcom_err-1.47.0-2.fc39.aarch64                                              
  libcurl-8.3.0-1.fc40.aarch64                                                  
  libdb-5.3.28-58.fc40.aarch64                                                  
  libeconf-0.5.2-1.fc40.aarch64                                                 
  libevent-2.1.12-9.fc39.aarch64                                                
  libfdisk-2.39.2-1.fc40.aarch64                                                
  libffi-3.4.4-4.fc39.aarch64                                                   
  libgcc-13.2.1-1.fc40.aarch64                                                  
  libgomp-13.2.1-1.fc40.aarch64                                                 
  libidn2-2.3.4-3.fc39.aarch64                                                  
  libmount-2.39.2-1.fc40.aarch64                                                
  libnghttp2-1.56.0-1.fc40.aarch64                                              
  libnsl2-2.0.0-6.fc39.aarch64                                                  
  libpkgconf-1.9.5-2.fc39.aarch64                                               
  libpsl-0.21.2-4.fc39.aarch64                                                  
  libpwquality-1.4.5-6.fc39.aarch64                                             
  libselinux-3.5-5.fc39.aarch64                                                 
  libsemanage-3.5-4.fc39.aarch64                                                
  libsepol-3.5-2.fc39.aarch64                                                   
  libsigsegv-2.14-5.fc39.aarch64                                                
  libsmartcols-2.39.2-1.fc40.aarch64                                            
  libssh-0.10.5-2.fc40.aarch64                                                  
  libssh-config-0.10.5-2.fc40.noarch                                            
  libstdc++-13.2.1-1.fc40.aarch64                                               
  libtasn1-4.19.0-3.fc39.aarch64                                                
  libtirpc-1.3.3-1.rc2.fc39.aarch64                                             
  libunistring-1.1-5.fc40.aarch64                                               
  libutempter-1.2.1-10.fc39.aarch64                                             
  libuuid-2.39.2-1.fc40.aarch64                                                 
  libverto-0.3.2-6.fc39.aarch64                                                 
  libxcrypt-4.4.36-2.fc39.aarch64                                               
  libxml2-2.11.5-1.fc40.aarch64                                                 
  libzstd-1.5.5-4.fc40.aarch64                                                  
  lua-libs-5.4.6-3.fc39.aarch64                                                 
  lua-srpm-macros-1-9.fc39.noarch                                               
  lz4-libs-1.9.4-4.fc39.aarch64                                                 
  mpfr-4.2.0-3.fc39.aarch64                                                     
  ncurses-base-6.4-7.20230520.fc40.noarch                                       
  ncurses-libs-6.4-7.20230520.fc40.aarch64                                      
  ocaml-srpm-macros-8-2.fc39.noarch                                             
  openblas-srpm-macros-2-14.fc39.noarch                                         
  openldap-2.6.6-1.fc39.aarch64                                                 
  openssl-libs-1:3.1.1-4.fc40.aarch64                                           
  p11-kit-0.25.0-2.fc39.aarch64                                                 
  p11-kit-trust-0.25.0-2.fc39.aarch64                                           
  package-notes-srpm-macros-0.5-9.fc39.noarch                                   
  pam-1.5.3-2.fc39.aarch64                                                      
  pam-libs-1.5.3-2.fc39.aarch64                                                 
  patch-2.7.6-22.fc39.aarch64                                                   
  pcre2-10.42-1.fc39.2.aarch64                                                  
  pcre2-syntax-10.42-1.fc39.2.noarch                                            
  perl-srpm-macros-1-51.fc39.noarch                                             
  pkgconf-1.9.5-2.fc39.aarch64                                                  
  pkgconf-m4-1.9.5-2.fc39.noarch                                                
  pkgconf-pkg-config-1.9.5-2.fc39.aarch64                                       
  popt-1.19-3.fc39.aarch64                                                      
  publicsuffix-list-dafsa-20230812-1.fc40.noarch                                
  pyproject-srpm-macros-1.9.0-2.fc39.noarch                                     
  python-srpm-macros-3.12-4.fc40.noarch                                         
  qt5-srpm-macros-5.15.10-2.fc39.noarch                                         
  qt6-srpm-macros-6.5.2-2.fc39.noarch                                           
  readline-8.2-4.fc39.aarch64                                                   
  redhat-rpm-config-270-1.fc40.noarch                                           
  rpm-4.18.99-1.fc40.aarch64                                                    
  rpm-build-4.18.99-1.fc40.aarch64                                              
  rpm-build-libs-4.18.99-1.fc40.aarch64                                         
  rpm-libs-4.18.99-1.fc40.aarch64                                               
  rpm-sequoia-1.5.0-1.fc40.aarch64                                              
  rust-srpm-macros-24-5.fc40.noarch                                             
  sed-4.8-14.fc39.aarch64                                                       
  setup-2.14.4-1.fc39.noarch                                                    
  shadow-utils-2:4.14.0-1.fc40.aarch64                                          
  sqlite-libs-3.43.1-1.fc40.aarch64                                             
  systemd-libs-254.1-2.fc40.aarch64                                             
  tar-2:1.35-2.fc40.aarch64                                                     
  tzdata-2023c-3.fc40.noarch                                                    
  unzip-6.0-62.fc39.aarch64                                                     
  util-linux-2.39.2-1.fc40.aarch64                                              
  util-linux-core-2.39.2-1.fc40.aarch64                                         
  which-2.21-40.fc39.aarch64                                                    
  xxhash-libs-0.8.2-1.fc39.aarch64                                              
  xz-5.4.4-1.fc39.aarch64                                                       
  xz-libs-5.4.4-1.fc39.aarch64                                                  
  zip-3.0-38.fc39.aarch64                                                       
  zlib-ng-compat-2.1.3-3.fc40.aarch64                                           
  zstd-1.5.5-4.fc40.aarch64                                                     

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.aarch64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.aarch64
authselect-1.4.2-3.fc39.aarch64
authselect-libs-1.4.2-3.fc39.aarch64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.aarch64
binutils-2.41-5.fc40.aarch64
binutils-gold-2.41-5.fc40.aarch64
bzip2-1.0.8-16.fc39.aarch64
bzip2-libs-1.0.8-16.fc39.aarch64
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.aarch64
coreutils-common-9.4-1.fc40.aarch64
cpio-2.14-4.fc39.aarch64
cracklib-2.9.11-2.fc40.aarch64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.aarch64
cyrus-sasl-lib-2.1.28-11.fc40.aarch64
debugedit-5.0-10.fc39.aarch64
diffutils-3.10-3.fc39.aarch64
dwz-0.15-3.fc39.aarch64
ed-1.19-4.fc39.aarch64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.aarch64
elfutils-debuginfod-client-0.189-6.fc40.aarch64
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.aarch64
elfutils-libs-0.189-6.fc40.aarch64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.aarch64
file-libs-5.45-1.fc40.aarch64
filesystem-3.18-6.fc39.aarch64
findutils-4.9.0-6.fc40.aarch64
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.aarch64
gdb-minimal-13.2-8.fc40.aarch64
gdbm-libs-1.23-4.fc39.aarch64
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.aarch64
glibc-common-2.38.9000-8.fc40.aarch64
glibc-gconv-extra-2.38.9000-8.fc40.aarch64
glibc-minimal-langpack-2.38.9000-8.fc40.aarch64
gmp-6.2.1-5.fc39.aarch64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.aarch64
gzip-1.12-6.fc39.aarch64
info-7.0.3-3.fc39.aarch64
jansson-2.13.1-7.fc39.aarch64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.aarch64
krb5-libs-1.21.2-1.fc40.aarch64
libacl-2.3.1-9.fc40.aarch64
libarchive-3.7.2-1.fc40.aarch64
libattr-2.5.1-9.fc40.aarch64
libblkid-2.39.2-1.fc40.aarch64
libbrotli-1.1.0-1.fc40.aarch64
libcap-2.48-7.fc39.aarch64
libcap-ng-0.8.3-8.fc40.aarch64
libcom_err-1.47.0-2.fc39.aarch64
libcurl-8.3.0-1.fc40.aarch64
libdb-5.3.28-58.fc40.aarch64
libeconf-0.5.2-1.fc40.aarch64
libevent-2.1.12-9.fc39.aarch64
libfdisk-2.39.2-1.fc40.aarch64
libffi-3.4.4-4.fc39.aarch64
libgcc-13.2.1-1.fc40.aarch64
libgomp-13.2.1-1.fc40.aarch64
libidn2-2.3.4-3.fc39.aarch64
libmount-2.39.2-1.fc40.aarch64
libnghttp2-1.56.0-1.fc40.aarch64
libnsl2-2.0.0-6.fc39.aarch64
libpkgconf-1.9.5-2.fc39.aarch64
libpsl-0.21.2-4.fc39.aarch64
libpwquality-1.4.5-6.fc39.aarch64
libselinux-3.5-5.fc39.aarch64
libsemanage-3.5-4.fc39.aarch64
libsepol-3.5-2.fc39.aarch64
libsigsegv-2.14-5.fc39.aarch64
libsmartcols-2.39.2-1.fc40.aarch64
libssh-0.10.5-2.fc40.aarch64
libssh-config-0.10.5-2.fc40.noarch
libstdc++-13.2.1-1.fc40.aarch64
libtasn1-4.19.0-3.fc39.aarch64
libtirpc-1.3.3-1.rc2.fc39.aarch64
libunistring-1.1-5.fc40.aarch64
libutempter-1.2.1-10.fc39.aarch64
libuuid-2.39.2-1.fc40.aarch64
libverto-0.3.2-6.fc39.aarch64
libxcrypt-4.4.36-2.fc39.aarch64
libxml2-2.11.5-1.fc40.aarch64
libzstd-1.5.5-4.fc40.aarch64
lua-libs-5.4.6-3.fc39.aarch64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.aarch64
mpfr-4.2.0-3.fc39.aarch64
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.aarch64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.aarch64
openssl-libs-3.1.1-4.fc40.aarch64
p11-kit-0.25.0-2.fc39.aarch64
p11-kit-trust-0.25.0-2.fc39.aarch64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.aarch64
pam-libs-1.5.3-2.fc39.aarch64
patch-2.7.6-22.fc39.aarch64
pcre2-10.42-1.fc39.2.aarch64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.aarch64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.aarch64
popt-1.19-3.fc39.aarch64
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.aarch64
redhat-rpm-config-270-1.fc40.noarch
rpm-4.18.99-1.fc40.aarch64
rpm-build-4.18.99-1.fc40.aarch64
rpm-build-libs-4.18.99-1.fc40.aarch64
rpm-libs-4.18.99-1.fc40.aarch64
rpm-sequoia-1.5.0-1.fc40.aarch64
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.aarch64
setup-2.14.4-1.fc39.noarch
shadow-utils-4.14.0-1.fc40.aarch64
sqlite-libs-3.43.1-1.fc40.aarch64
systemd-libs-254.1-2.fc40.aarch64
tar-1.35-2.fc40.aarch64
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.aarch64
util-linux-2.39.2-1.fc40.aarch64
util-linux-core-2.39.2-1.fc40.aarch64
which-2.21-40.fc39.aarch64
xxhash-libs-0.8.2-1.fc39.aarch64
xz-5.4.4-1.fc39.aarch64
xz-libs-5.4.4-1.fc39.aarch64
zip-3.0-38.fc39.aarch64
zlib-ng-compat-2.1.3-3.fc40.aarch64
zstd-1.5.5-4.fc40.aarch64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1689984000
Wrote: /builddir/build/SRPMS/samtools-1.15.1-3.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1695062940.091470/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-aarch64-1695062940.091470/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-aarch64-1695062940.091470/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-5ewmaf25/samtools/samtools.spec) Config(child) 1 minutes 3 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/samtools-1.15.1-3.fc40.src.rpm)  Config(fedora-rawhide-aarch64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695062940.091470/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695062940.091470/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695062940.091470/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.18.99-1.fc40.aarch64
  rpm-sequoia-1.5.0-1.fc40.aarch64
  python3-dnf-4.16.2-4.fc40.noarch
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch
  yum-4.16.2-4.fc40.noarch
Start: build phase for samtools-1.15.1-3.fc40.src.rpm
Start: build setup for samtools-1.15.1-3.fc40.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1689984000
Wrote: /builddir/build/SRPMS/samtools-1.15.1-3.fc40.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  66 kB/s | 1.5 kB     00:00    
fedora                                          137 kB/s | 7.0 kB     00:00    
Dependencies resolved.
================================================================================
 Package                  Arch      Version                   Repository   Size
================================================================================
Installing:
 gcc                      aarch64   13.2.1-1.fc40             copr_base    31 M
 htslib-devel             aarch64   1.15.1-3.fc40             copr_base   100 k
 htslib-tools             aarch64   1.15.1-3.fc40             copr_base   544 k
 make                     aarch64   1:4.4.1-2.fc39            fedora      585 k
 ncurses-devel            aarch64   6.4-7.20230520.fc40       fedora      546 k
 perl-FindBin             noarch    1.53-500.fc39             fedora       14 k
 perl-Getopt-Long         noarch    1:2.54-500.fc39           fedora       60 k
 perl-interpreter         aarch64   4:5.38.0-500.fc39         fedora       72 k
 perl-lib                 aarch64   0.65-500.fc39             fedora       15 k
 zlib-ng-compat-devel     aarch64   2.1.3-3.fc40              copr_base    34 k
Installing dependencies:
 annobin-docs             noarch    12.26-1.fc40              fedora       94 k
 annobin-plugin-gcc       aarch64   12.26-1.fc40              fedora      958 k
 cpp                      aarch64   13.2.1-1.fc40             copr_base   9.7 M
 gc                       aarch64   8.2.2-4.fc39              fedora      110 k
 gcc-plugin-annobin       aarch64   13.2.1-1.fc40             copr_base    47 k
 glibc-devel              aarch64   2.38.9000-8.fc40          copr_base   503 k
 groff-base               aarch64   1.23.0-2.fc39             fedora      1.1 M
 guile22                  aarch64   2.2.7-9.fc39              fedora      6.5 M
 htslib                   aarch64   1.15.1-3.fc40             copr_base   480 k
 kernel-headers           aarch64   6.6.0-0.rc1.git0.1.fc40   fedora      1.5 M
 libasan                  aarch64   13.2.1-1.fc40             copr_base   455 k
 libatomic                aarch64   13.2.1-1.fc40             copr_base    36 k
 libmpc                   aarch64   1.3.1-3.fc39              fedora       72 k
 libtool-ltdl             aarch64   2.4.7-8.fc40              fedora       36 k
 libubsan                 aarch64   13.2.1-1.fc40             copr_base   204 k
 libxcrypt-devel          aarch64   4.4.36-2.fc39             fedora       30 k
 ncurses                  aarch64   6.4-7.20230520.fc40       fedora      415 k
 ncurses-c++-libs         aarch64   6.4-7.20230520.fc40       fedora       37 k
 perl-AutoLoader          noarch    5.74-500.fc39             fedora       21 k
 perl-B                   aarch64   1.88-500.fc39             fedora      178 k
 perl-Carp                noarch    1.54-500.fc39             fedora       29 k
 perl-Class-Struct        noarch    0.68-500.fc39             fedora       22 k
 perl-Data-Dumper         aarch64   2.188-501.fc39            fedora       55 k
 perl-Digest              noarch    1.20-500.fc39             fedora       25 k
 perl-Digest-MD5          aarch64   2.58-500.fc39             fedora       36 k
 perl-DynaLoader          aarch64   1.54-500.fc39             fedora       26 k
 perl-Encode              aarch64   4:3.19-500.fc39           fedora      1.7 M
 perl-Errno               aarch64   1.37-500.fc39             fedora       15 k
 perl-Exporter            noarch    5.77-500.fc39             fedora       31 k
 perl-Fcntl               aarch64   1.15-500.fc39             fedora       21 k
 perl-File-Basename       noarch    2.86-500.fc39             fedora       17 k
 perl-File-Path           noarch    2.18-500.fc39             fedora       35 k
 perl-File-Temp           noarch    1:0.231.100-500.fc39      fedora       58 k
 perl-File-stat           noarch    1.13-500.fc39             fedora       17 k
 perl-FileHandle          noarch    2.05-500.fc39             fedora       16 k
 perl-Getopt-Std          noarch    1.13-500.fc39             fedora       16 k
 perl-HTTP-Tiny           noarch    0.088-3.fc39              fedora       56 k
 perl-IO                  aarch64   1.52-500.fc39             fedora       83 k
 perl-IO-Socket-IP        noarch    0.42-1.fc39               fedora       42 k
 perl-IO-Socket-SSL       noarch    2.083-3.fc39              fedora      225 k
 perl-IPC-Open3           noarch    1.22-500.fc39             fedora       22 k
 perl-MIME-Base64         aarch64   3.16-500.fc39             fedora       30 k
 perl-Mozilla-CA          noarch    20230821-1.fc40           fedora       13 k
 perl-Net-SSLeay          aarch64   1.92-10.fc39              fedora      356 k
 perl-POSIX               aarch64   2.13-500.fc39             fedora       98 k
 perl-PathTools           aarch64   3.89-500.fc39             fedora       88 k
 perl-Pod-Escapes         noarch    1:1.07-501.fc40           fedora       19 k
 perl-Pod-Perldoc         noarch    3.28.01-501.fc39          fedora       86 k
 perl-Pod-Simple          noarch    1:3.45-4.fc39             fedora      218 k
 perl-Pod-Usage           noarch    4:2.03-500.fc39           fedora       39 k
 perl-Scalar-List-Utils   aarch64   5:1.63-500.fc39           fedora       71 k
 perl-SelectSaver         noarch    1.02-500.fc39             fedora       12 k
 perl-Socket              aarch64   4:2.037-3.fc39            fedora       56 k
 perl-Storable            aarch64   1:3.32-500.fc39           fedora       97 k
 perl-Symbol              noarch    1.09-500.fc39             fedora       14 k
 perl-Term-ANSIColor      noarch    5.01-501.fc39             fedora       47 k
 perl-Term-Cap            noarch    1.18-500.fc39             fedora       22 k
 perl-Text-ParseWords     noarch    3.31-500.fc39             fedora       16 k
 perl-Text-Tabs+Wrap      noarch    2023.0511-3.fc39          fedora       22 k
 perl-Time-Local          noarch    2:1.350-3.fc39            fedora       34 k
 perl-URI                 noarch    5.21-1.fc40               fedora      125 k
 perl-base                noarch    2.27-500.fc39             fedora       16 k
 perl-constant            noarch    1.33-501.fc39             fedora       22 k
 perl-if                  noarch    0.61.000-500.fc39         fedora       14 k
 perl-libnet              noarch    3.15-501.fc39             fedora      129 k
 perl-libs                aarch64   4:5.38.0-500.fc39         fedora      2.3 M
 perl-locale              noarch    1.10-500.fc39             fedora       14 k
 perl-mro                 aarch64   1.28-500.fc39             fedora       29 k
 perl-overload            noarch    1.37-500.fc39             fedora       46 k
 perl-overloading         noarch    0.02-500.fc39             fedora       13 k
 perl-parent              noarch    1:0.241-500.fc39          fedora       14 k
 perl-podlators           noarch    1:5.01-500.fc39           fedora      125 k
 perl-vars                noarch    1.05-500.fc39             fedora       13 k

Transaction Summary
================================================================================
Install  83 Packages

Total download size: 62 M
Installed size: 216 M
Downloading Packages:
(1/83): gcc-plugin-annobin-13.2.1-1.fc40.aarch6 2.0 MB/s |  47 kB     00:00    
(2/83): glibc-devel-2.38.9000-8.fc40.aarch64.rp  30 MB/s | 503 kB     00:00    
(3/83): htslib-1.15.1-3.fc40.aarch64.rpm         87 MB/s | 480 kB     00:00    
(4/83): cpp-13.2.1-1.fc40.aarch64.rpm           124 MB/s | 9.7 MB     00:00    
(5/83): htslib-devel-1.15.1-3.fc40.aarch64.rpm  7.7 MB/s | 100 kB     00:00    
(6/83): libasan-13.2.1-1.fc40.aarch64.rpm        62 MB/s | 455 kB     00:00    
(7/83): libatomic-13.2.1-1.fc40.aarch64.rpm      11 MB/s |  36 kB     00:00    
(8/83): libubsan-13.2.1-1.fc40.aarch64.rpm       37 MB/s | 204 kB     00:00    
(9/83): htslib-tools-1.15.1-3.fc40.aarch64.rpm   23 MB/s | 544 kB     00:00    
(10/83): zlib-ng-compat-devel-2.1.3-3.fc40.aarc  14 MB/s |  34 kB     00:00    
(11/83): annobin-docs-12.26-1.fc40.noarch.rpm   5.8 MB/s |  94 kB     00:00    
(12/83): gc-8.2.2-4.fc39.aarch64.rpm             26 MB/s | 110 kB     00:00    
(13/83): gcc-13.2.1-1.fc40.aarch64.rpm          197 MB/s |  31 MB     00:00    
(14/83): annobin-plugin-gcc-12.26-1.fc40.aarch6  18 MB/s | 958 kB     00:00    
(15/83): groff-base-1.23.0-2.fc39.aarch64.rpm    30 MB/s | 1.1 MB     00:00    
(16/83): libmpc-1.3.1-3.fc39.aarch64.rpm         17 MB/s |  72 kB     00:00    
(17/83): libtool-ltdl-2.4.7-8.fc40.aarch64.rpm   10 MB/s |  36 kB     00:00    
(18/83): libxcrypt-devel-4.4.36-2.fc39.aarch64.  10 MB/s |  30 kB     00:00    
(19/83): make-4.4.1-2.fc39.aarch64.rpm           41 MB/s | 585 kB     00:00    
(20/83): kernel-headers-6.6.0-0.rc1.git0.1.fc40  50 MB/s | 1.5 MB     00:00    
(21/83): ncurses-6.4-7.20230520.fc40.aarch64.rp  79 MB/s | 415 kB     00:00    
(22/83): ncurses-c++-libs-6.4-7.20230520.fc40.a  15 MB/s |  37 kB     00:00    
(23/83): ncurses-devel-6.4-7.20230520.fc40.aarc 125 MB/s | 546 kB     00:00    
(24/83): perl-AutoLoader-5.74-500.fc39.noarch.r 4.3 MB/s |  21 kB     00:00    
(25/83): perl-B-1.88-500.fc39.aarch64.rpm        88 MB/s | 178 kB     00:00    
(26/83): perl-Carp-1.54-500.fc39.noarch.rpm     6.6 MB/s |  29 kB     00:00    
(27/83): perl-Class-Struct-0.68-500.fc39.noarch 7.0 MB/s |  22 kB     00:00    
(28/83): perl-Data-Dumper-2.188-501.fc39.aarch6  19 MB/s |  55 kB     00:00    
(29/83): perl-Digest-1.20-500.fc39.noarch.rpm   7.9 MB/s |  25 kB     00:00    
(30/83): perl-Digest-MD5-2.58-500.fc39.aarch64.  22 MB/s |  36 kB     00:00    
(31/83): perl-DynaLoader-1.54-500.fc39.aarch64.  14 MB/s |  26 kB     00:00    
(32/83): perl-Encode-3.19-500.fc39.aarch64.rpm  164 MB/s | 1.7 MB     00:00    
(33/83): perl-Errno-1.37-500.fc39.aarch64.rpm   1.5 MB/s |  15 kB     00:00    
(34/83): perl-Exporter-5.77-500.fc39.noarch.rpm  10 MB/s |  31 kB     00:00    
(35/83): perl-Fcntl-1.15-500.fc39.aarch64.rpm   5.7 MB/s |  21 kB     00:00    
(36/83): perl-File-Basename-2.86-500.fc39.noarc 7.4 MB/s |  17 kB     00:00    
(37/83): perl-File-Path-2.18-500.fc39.noarch.rp  14 MB/s |  35 kB     00:00    
(38/83): perl-File-Temp-0.231.100-500.fc39.noar  40 MB/s |  58 kB     00:00    
(39/83): perl-File-stat-1.13-500.fc39.noarch.rp 8.0 MB/s |  17 kB     00:00    
(40/83): perl-FileHandle-2.05-500.fc39.noarch.r 5.8 MB/s |  16 kB     00:00    
(41/83): perl-Getopt-Long-2.54-500.fc39.noarch.  32 MB/s |  60 kB     00:00    
(42/83): perl-FindBin-1.53-500.fc39.noarch.rpm  4.7 MB/s |  14 kB     00:00    
(43/83): perl-Getopt-Std-1.13-500.fc39.noarch.r  12 MB/s |  16 kB     00:00    
(44/83): perl-HTTP-Tiny-0.088-3.fc39.noarch.rpm  28 MB/s |  56 kB     00:00    
(45/83): perl-IO-1.52-500.fc39.aarch64.rpm       50 MB/s |  83 kB     00:00    
(46/83): perl-IO-Socket-IP-0.42-1.fc39.noarch.r  25 MB/s |  42 kB     00:00    
(47/83): perl-IO-Socket-SSL-2.083-3.fc39.noarch  85 MB/s | 225 kB     00:00    
(48/83): perl-IPC-Open3-1.22-500.fc39.noarch.rp 9.4 MB/s |  22 kB     00:00    
(49/83): perl-MIME-Base64-3.16-500.fc39.aarch64  14 MB/s |  30 kB     00:00    
(50/83): perl-Mozilla-CA-20230821-1.fc40.noarch 5.1 MB/s |  13 kB     00:00    
(51/83): perl-Net-SSLeay-1.92-10.fc39.aarch64.r 100 MB/s | 356 kB     00:00    
(52/83): perl-POSIX-2.13-500.fc39.aarch64.rpm    28 MB/s |  98 kB     00:00    
(53/83): perl-PathTools-3.89-500.fc39.aarch64.r  38 MB/s |  88 kB     00:00    
(54/83): perl-Pod-Escapes-1.07-501.fc40.noarch. 6.9 MB/s |  19 kB     00:00    
(55/83): perl-Pod-Perldoc-3.28.01-501.fc39.noar  66 MB/s |  86 kB     00:00    
(56/83): perl-Pod-Simple-3.45-4.fc39.noarch.rpm  91 MB/s | 218 kB     00:00    
(57/83): perl-Pod-Usage-2.03-500.fc39.noarch.rp  21 MB/s |  39 kB     00:00    
(58/83): perl-Scalar-List-Utils-1.63-500.fc39.a  55 MB/s |  71 kB     00:00    
(59/83): perl-SelectSaver-1.02-500.fc39.noarch. 9.1 MB/s |  12 kB     00:00    
(60/83): perl-Socket-2.037-3.fc39.aarch64.rpm    23 MB/s |  56 kB     00:00    
(61/83): perl-Storable-3.32-500.fc39.aarch64.rp  68 MB/s |  97 kB     00:00    
(62/83): perl-Symbol-1.09-500.fc39.noarch.rpm    12 MB/s |  14 kB     00:00    
(63/83): perl-Term-ANSIColor-5.01-501.fc39.noar  20 MB/s |  47 kB     00:00    
(64/83): perl-Term-Cap-1.18-500.fc39.noarch.rpm 7.9 MB/s |  22 kB     00:00    
(65/83): perl-Text-ParseWords-3.31-500.fc39.noa  13 MB/s |  16 kB     00:00    
(66/83): perl-Text-Tabs+Wrap-2023.0511-3.fc39.n  10 MB/s |  22 kB     00:00    
(67/83): perl-Time-Local-1.350-3.fc39.noarch.rp  20 MB/s |  34 kB     00:00    
(68/83): perl-URI-5.21-1.fc40.noarch.rpm         49 MB/s | 125 kB     00:00    
(69/83): perl-base-2.27-500.fc39.noarch.rpm     5.8 MB/s |  16 kB     00:00    
(70/83): perl-constant-1.33-501.fc39.noarch.rpm  19 MB/s |  22 kB     00:00    
(71/83): perl-if-0.61.000-500.fc39.noarch.rpm   8.9 MB/s |  14 kB     00:00    
(72/83): perl-interpreter-5.38.0-500.fc39.aarch  47 MB/s |  72 kB     00:00    
(73/83): perl-libnet-3.15-501.fc39.noarch.rpm    50 MB/s | 129 kB     00:00    
(74/83): perl-lib-0.65-500.fc39.aarch64.rpm     3.6 MB/s |  15 kB     00:00    
(75/83): perl-locale-1.10-500.fc39.noarch.rpm   1.8 MB/s |  14 kB     00:00    
(76/83): perl-libs-5.38.0-500.fc39.aarch64.rpm  204 MB/s | 2.3 MB     00:00    
(77/83): perl-mro-1.28-500.fc39.aarch64.rpm     5.5 MB/s |  29 kB     00:00    
(78/83): guile22-2.2.7-9.fc39.aarch64.rpm        46 MB/s | 6.5 MB     00:00    
(79/83): perl-overload-1.37-500.fc39.noarch.rpm 3.6 MB/s |  46 kB     00:00    
(80/83): perl-overloading-0.02-500.fc39.noarch. 1.2 MB/s |  13 kB     00:00    
(81/83): perl-parent-0.241-500.fc39.noarch.rpm   13 MB/s |  14 kB     00:00    
(82/83): perl-podlators-5.01-500.fc39.noarch.rp  74 MB/s | 125 kB     00:00    
(83/83): perl-vars-1.05-500.fc39.noarch.rpm     6.6 MB/s |  13 kB     00:00    
--------------------------------------------------------------------------------
Total                                           171 MB/s |  62 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : libmpc-1.3.1-3.fc39.aarch64                           1/83 
  Installing       : htslib-1.15.1-3.fc40.aarch64                          2/83 
  Installing       : cpp-13.2.1-1.fc40.aarch64                             3/83 
  Installing       : ncurses-c++-libs-6.4-7.20230520.fc40.aarch64          4/83 
  Installing       : ncurses-6.4-7.20230520.fc40.aarch64                   5/83 
  Installing       : libtool-ltdl-2.4.7-8.fc40.aarch64                     6/83 
  Installing       : kernel-headers-6.6.0-0.rc1.git0.1.fc40.aarch64        7/83 
  Installing       : libxcrypt-devel-4.4.36-2.fc39.aarch64                 8/83 
  Installing       : glibc-devel-2.38.9000-8.fc40.aarch64                  9/83 
  Running scriptlet: groff-base-1.23.0-2.fc39.aarch64                     10/83 
  Installing       : groff-base-1.23.0-2.fc39.aarch64                     10/83 
  Running scriptlet: groff-base-1.23.0-2.fc39.aarch64                     10/83 
  Installing       : perl-Digest-1.20-500.fc39.noarch                     11/83 
  Installing       : perl-Digest-MD5-2.58-500.fc39.aarch64                12/83 
  Installing       : perl-B-1.88-500.fc39.aarch64                         13/83 
  Installing       : perl-FileHandle-2.05-500.fc39.noarch                 14/83 
  Installing       : perl-Data-Dumper-2.188-501.fc39.aarch64              15/83 
  Installing       : perl-libnet-3.15-501.fc39.noarch                     16/83 
  Installing       : perl-AutoLoader-5.74-500.fc39.noarch                 17/83 
  Installing       : perl-base-2.27-500.fc39.noarch                       18/83 
  Installing       : perl-URI-5.21-1.fc40.noarch                          19/83 
  Installing       : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch          20/83 
  Installing       : perl-Mozilla-CA-20230821-1.fc40.noarch               21/83 
  Installing       : perl-if-0.61.000-500.fc39.noarch                     22/83 
  Installing       : perl-locale-1.10-500.fc39.noarch                     23/83 
  Installing       : perl-IO-Socket-IP-0.42-1.fc39.noarch                 24/83 
  Installing       : perl-Time-Local-2:1.350-3.fc39.noarch                25/83 
  Installing       : perl-File-Path-2.18-500.fc39.noarch                  26/83 
  Installing       : perl-IO-Socket-SSL-2.083-3.fc39.noarch               27/83 
  Installing       : perl-Net-SSLeay-1.92-10.fc39.aarch64                 28/83 
  Installing       : perl-Pod-Escapes-1:1.07-501.fc40.noarch              29/83 
  Installing       : perl-Class-Struct-0.68-500.fc39.noarch               30/83 
  Installing       : perl-Term-ANSIColor-5.01-501.fc39.noarch             31/83 
  Installing       : perl-POSIX-2.13-500.fc39.aarch64                     32/83 
  Installing       : perl-IPC-Open3-1.22-500.fc39.noarch                  33/83 
  Installing       : perl-File-Temp-1:0.231.100-500.fc39.noarch           34/83 
  Installing       : perl-HTTP-Tiny-0.088-3.fc39.noarch                   35/83 
  Installing       : perl-Term-Cap-1.18-500.fc39.noarch                   36/83 
  Installing       : perl-Pod-Simple-1:3.45-4.fc39.noarch                 37/83 
  Installing       : perl-Socket-4:2.037-3.fc39.aarch64                   38/83 
  Installing       : perl-SelectSaver-1.02-500.fc39.noarch                39/83 
  Installing       : perl-Symbol-1.09-500.fc39.noarch                     40/83 
  Installing       : perl-File-stat-1.13-500.fc39.noarch                  41/83 
  Installing       : perl-podlators-1:5.01-500.fc39.noarch                42/83 
  Installing       : perl-Pod-Perldoc-3.28.01-501.fc39.noarch             43/83 
  Installing       : perl-Fcntl-1.15-500.fc39.aarch64                     44/83 
  Installing       : perl-Text-ParseWords-3.31-500.fc39.noarch            45/83 
  Installing       : perl-mro-1.28-500.fc39.aarch64                       46/83 
  Installing       : perl-IO-1.52-500.fc39.aarch64                        47/83 
  Installing       : perl-overloading-0.02-500.fc39.noarch                48/83 
  Installing       : perl-Pod-Usage-4:2.03-500.fc39.noarch                49/83 
  Installing       : perl-Errno-1.37-500.fc39.aarch64                     50/83 
  Installing       : perl-File-Basename-2.86-500.fc39.noarch              51/83 
  Installing       : perl-Getopt-Std-1.13-500.fc39.noarch                 52/83 
  Installing       : perl-MIME-Base64-3.16-500.fc39.aarch64               53/83 
  Installing       : perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64       54/83 
  Installing       : perl-constant-1.33-501.fc39.noarch                   55/83 
  Installing       : perl-Storable-1:3.32-500.fc39.aarch64                56/83 
  Installing       : perl-overload-1.37-500.fc39.noarch                   57/83 
  Installing       : perl-parent-1:0.241-500.fc39.noarch                  58/83 
  Installing       : perl-vars-1.05-500.fc39.noarch                       59/83 
  Installing       : perl-Getopt-Long-1:2.54-500.fc39.noarch              60/83 
  Installing       : perl-Carp-1.54-500.fc39.noarch                       61/83 
  Installing       : perl-Exporter-5.77-500.fc39.noarch                   62/83 
  Installing       : perl-PathTools-3.89-500.fc39.aarch64                 63/83 
  Installing       : perl-DynaLoader-1.54-500.fc39.aarch64                64/83 
  Installing       : perl-Encode-4:3.19-500.fc39.aarch64                  65/83 
  Installing       : perl-libs-4:5.38.0-500.fc39.aarch64                  66/83 
  Installing       : perl-interpreter-4:5.38.0-500.fc39.aarch64           67/83 
  Installing       : gc-8.2.2-4.fc39.aarch64                              68/83 
  Installing       : guile22-2.2.7-9.fc39.aarch64                         69/83 
  Installing       : make-1:4.4.1-2.fc39.aarch64                          70/83 
  Installing       : annobin-docs-12.26-1.fc40.noarch                     71/83 
  Installing       : libubsan-13.2.1-1.fc40.aarch64                       72/83 
  Installing       : libatomic-13.2.1-1.fc40.aarch64                      73/83 
  Installing       : libasan-13.2.1-1.fc40.aarch64                        74/83 
  Installing       : gcc-13.2.1-1.fc40.aarch64                            75/83 
  Running scriptlet: gcc-13.2.1-1.fc40.aarch64                            75/83 
  Installing       : gcc-plugin-annobin-13.2.1-1.fc40.aarch64             76/83 
  Running scriptlet: gcc-plugin-annobin-13.2.1-1.fc40.aarch64             76/83 
  Installing       : annobin-plugin-gcc-12.26-1.fc40.aarch64              77/83 
  Running scriptlet: annobin-plugin-gcc-12.26-1.fc40.aarch64              77/83 
  Installing       : perl-FindBin-1.53-500.fc39.noarch                    78/83 
  Installing       : perl-lib-0.65-500.fc39.aarch64                       79/83 
  Installing       : ncurses-devel-6.4-7.20230520.fc40.aarch64            80/83 
  Installing       : htslib-devel-1.15.1-3.fc40.aarch64                   81/83 
  Installing       : htslib-tools-1.15.1-3.fc40.aarch64                   82/83 
  Installing       : zlib-ng-compat-devel-2.1.3-3.fc40.aarch64            83/83 
  Running scriptlet: zlib-ng-compat-devel-2.1.3-3.fc40.aarch64            83/83 
  Verifying        : cpp-13.2.1-1.fc40.aarch64                             1/83 
  Verifying        : gcc-13.2.1-1.fc40.aarch64                             2/83 
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  Verifying        : annobin-docs-12.26-1.fc40.noarch                     12/83 
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  Verifying        : gc-8.2.2-4.fc39.aarch64                              14/83 
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  Verifying        : guile22-2.2.7-9.fc39.aarch64                         16/83 
  Verifying        : kernel-headers-6.6.0-0.rc1.git0.1.fc40.aarch64       17/83 
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  Verifying        : perl-vars-1.05-500.fc39.noarch                       83/83 

Installed:
  annobin-docs-12.26-1.fc40.noarch                                              
  annobin-plugin-gcc-12.26-1.fc40.aarch64                                       
  cpp-13.2.1-1.fc40.aarch64                                                     
  gc-8.2.2-4.fc39.aarch64                                                       
  gcc-13.2.1-1.fc40.aarch64                                                     
  gcc-plugin-annobin-13.2.1-1.fc40.aarch64                                      
  glibc-devel-2.38.9000-8.fc40.aarch64                                          
  groff-base-1.23.0-2.fc39.aarch64                                              
  guile22-2.2.7-9.fc39.aarch64                                                  
  htslib-1.15.1-3.fc40.aarch64                                                  
  htslib-devel-1.15.1-3.fc40.aarch64                                            
  htslib-tools-1.15.1-3.fc40.aarch64                                            
  kernel-headers-6.6.0-0.rc1.git0.1.fc40.aarch64                                
  libasan-13.2.1-1.fc40.aarch64                                                 
  libatomic-13.2.1-1.fc40.aarch64                                               
  libmpc-1.3.1-3.fc39.aarch64                                                   
  libtool-ltdl-2.4.7-8.fc40.aarch64                                             
  libubsan-13.2.1-1.fc40.aarch64                                                
  libxcrypt-devel-4.4.36-2.fc39.aarch64                                         
  make-1:4.4.1-2.fc39.aarch64                                                   
  ncurses-6.4-7.20230520.fc40.aarch64                                           
  ncurses-c++-libs-6.4-7.20230520.fc40.aarch64                                  
  ncurses-devel-6.4-7.20230520.fc40.aarch64                                     
  perl-AutoLoader-5.74-500.fc39.noarch                                          
  perl-B-1.88-500.fc39.aarch64                                                  
  perl-Carp-1.54-500.fc39.noarch                                                
  perl-Class-Struct-0.68-500.fc39.noarch                                        
  perl-Data-Dumper-2.188-501.fc39.aarch64                                       
  perl-Digest-1.20-500.fc39.noarch                                              
  perl-Digest-MD5-2.58-500.fc39.aarch64                                         
  perl-DynaLoader-1.54-500.fc39.aarch64                                         
  perl-Encode-4:3.19-500.fc39.aarch64                                           
  perl-Errno-1.37-500.fc39.aarch64                                              
  perl-Exporter-5.77-500.fc39.noarch                                            
  perl-Fcntl-1.15-500.fc39.aarch64                                              
  perl-File-Basename-2.86-500.fc39.noarch                                       
  perl-File-Path-2.18-500.fc39.noarch                                           
  perl-File-Temp-1:0.231.100-500.fc39.noarch                                    
  perl-File-stat-1.13-500.fc39.noarch                                           
  perl-FileHandle-2.05-500.fc39.noarch                                          
  perl-FindBin-1.53-500.fc39.noarch                                             
  perl-Getopt-Long-1:2.54-500.fc39.noarch                                       
  perl-Getopt-Std-1.13-500.fc39.noarch                                          
  perl-HTTP-Tiny-0.088-3.fc39.noarch                                            
  perl-IO-1.52-500.fc39.aarch64                                                 
  perl-IO-Socket-IP-0.42-1.fc39.noarch                                          
  perl-IO-Socket-SSL-2.083-3.fc39.noarch                                        
  perl-IPC-Open3-1.22-500.fc39.noarch                                           
  perl-MIME-Base64-3.16-500.fc39.aarch64                                        
  perl-Mozilla-CA-20230821-1.fc40.noarch                                        
  perl-Net-SSLeay-1.92-10.fc39.aarch64                                          
  perl-POSIX-2.13-500.fc39.aarch64                                              
  perl-PathTools-3.89-500.fc39.aarch64                                          
  perl-Pod-Escapes-1:1.07-501.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-501.fc39.noarch                                      
  perl-Pod-Simple-1:3.45-4.fc39.noarch                                          
  perl-Pod-Usage-4:2.03-500.fc39.noarch                                         
  perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64                                
  perl-SelectSaver-1.02-500.fc39.noarch                                         
  perl-Socket-4:2.037-3.fc39.aarch64                                            
  perl-Storable-1:3.32-500.fc39.aarch64                                         
  perl-Symbol-1.09-500.fc39.noarch                                              
  perl-Term-ANSIColor-5.01-501.fc39.noarch                                      
  perl-Term-Cap-1.18-500.fc39.noarch                                            
  perl-Text-ParseWords-3.31-500.fc39.noarch                                     
  perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch                                   
  perl-Time-Local-2:1.350-3.fc39.noarch                                         
  perl-URI-5.21-1.fc40.noarch                                                   
  perl-base-2.27-500.fc39.noarch                                                
  perl-constant-1.33-501.fc39.noarch                                            
  perl-if-0.61.000-500.fc39.noarch                                              
  perl-interpreter-4:5.38.0-500.fc39.aarch64                                    
  perl-lib-0.65-500.fc39.aarch64                                                
  perl-libnet-3.15-501.fc39.noarch                                              
  perl-libs-4:5.38.0-500.fc39.aarch64                                           
  perl-locale-1.10-500.fc39.noarch                                              
  perl-mro-1.28-500.fc39.aarch64                                                
  perl-overload-1.37-500.fc39.noarch                                            
  perl-overloading-0.02-500.fc39.noarch                                         
  perl-parent-1:0.241-500.fc39.noarch                                           
  perl-podlators-1:5.01-500.fc39.noarch                                         
  perl-vars-1.05-500.fc39.noarch                                                
  zlib-ng-compat-devel-2.1.3-3.fc40.aarch64                                     

Complete!
Finish: build setup for samtools-1.15.1-3.fc40.src.rpm
Start: rpmbuild samtools-1.15.1-3.fc40.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1689984000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Th34p9
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf samtools-1.15.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/samtools-1.15.1.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd samtools-1.15.1
+ rm -rf /builddir/build/BUILD/samtools-1.15.1-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/samtools-1.15.1-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -f INSTALL
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.krHm6C
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
--- ./htslib-1.15.1/configure.backup	2022-04-07 15:42:52.000000000 +0000
+++ ./htslib-1.15.1/configure	2023-09-18 18:50:15.785678445 +0000
@@ -1697,7 +1697,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=aarch64-redhat-linux --host=aarch64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' --prefix=/usr --with-htslib=system
checking for gawk... gawk
checking for aarch64-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking for NcursesW wide-character library... yes
checking for working ncursesw/curses.h... yes
checking for library containing cbreak... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
+ /usr/bin/make -O -j4 V=1 VERBOSE=1
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_aux.o bam_aux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_index.o bam_index.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam.o bam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_cat.o bam_cat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_fastq.o bam_fastq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_plbuf.o bam_plbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_md.o bam_md.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_plcmd.o bam_plcmd.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_reheader.o bam_reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o sam_view.o sam_view.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_rmdup.o bam_rmdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_rmdupse.o bam_rmdupse.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_color.o bam_color.c
echo '#define SAMTOOLS_VERSION "1.15.1"' > version.h
echo '#define SAMTOOLS_CC "gcc"' >> version.h
echo '#define SAMTOOLS_CPPFLAGS ""' >> version.h
echo '#define SAMTOOLS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer"' >> version.h
echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "' >> version.h
echo '#define SAMTOOLS_HTSDIR ""' >> version.h
echo '#define SAMTOOLS_LIBS ""' >> version.h
echo '#define SAMTOOLS_CURSES_LIB "-lncursesw"' >> version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_stat.o bam_stat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam2bcf.o bam2bcf.c
bam2bcf.c: In function ‘bcf_call_glfgen’:
bam2bcf.c:81:33: warning: argument 2 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   81 |         bca->bases = (uint16_t*)realloc(bca->bases, 2 * bca->max_bases);
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/htslib/kstring.h:30,
                 from /usr/include/htslib/hts.h:37,
                 from bam2bcf.c:30:
/usr/include/stdlib.h:683:14: note: in a call to allocation function ‘realloc’ declared here
  683 | extern void *realloc (void *__ptr, size_t __size)
      |              ^~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_mate.o bam_mate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o sample.o sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o cut_target.o cut_target.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o coverage.o coverage.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam2depth.o bam2depth.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o padding.o padding.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o phase.o phase.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bedcov.o bedcov.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o faidx.o faidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o dict.o dict.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o stats_isize.o stats_isize.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bamshuf.o bamshuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_flags.o bam_flags.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_sort.o bam_sort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_split.o bam_split.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_tview.o bam_tview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_tview_curses.o bam_tview_curses.c
bam_tview_curses.c: In function ‘tv_win_help’:
bam_tview_curses.c:333:14: warning: ‘base’ is used uninitialized [-Wuninitialized]
  333 |     tview_t* base=(tview_t*)base;
      |              ^~~~
bam_tview_curses.c:333:14: note: ‘base’ was declared here
  333 |     tview_t* base=(tview_t*)base;
      |              ^~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_tview_html.o bam_tview_html.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_quickcheck.o bam_quickcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_lpileup.o bam_lpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o tmp_file.o tmp_file.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_addrprg.o bam_addrprg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o stats.o stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_import.o bam_import.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_ampliconclip.o bam_ampliconclip.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_samples.o bam_samples.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_markdup.o bam_markdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o consensus_pileup.o consensus_pileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o sam_opts.o sam_opts.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o amplicon_stats.o amplicon_stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o sam_utils.o sam_utils.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bam_consensus.o bam_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMAQ_LONGREADS -I.  -I./lz4  -c -o misc/maq2sam-long.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o misc/maq2sam-short.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bedidx.o bedidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o misc/md5sum-lite.o misc/md5sum-lite.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o misc/md5fa.o misc/md5fa.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o misc/ace2sam.o misc/ace2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/test.o test/test.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o misc/wgsim.o misc/wgsim.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o lz4/lz4.o lz4/lz4.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/split/test_count_rg.o test/split/test_count_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/split/test_parse_args.o test/split/test_parse_args.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/vcf-miniview.o test/vcf-miniview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c
ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o bamtk.o bamtk.c
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/maq2sam-long misc/maq2sam-long.o -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/maq2sam-short misc/maq2sam-short.o -lz 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -I./lz4  -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/md5fa misc/md5fa.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/ace2sam misc/ace2sam.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/wgsim misc/wgsim.o -lm -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/vcf-miniview test/vcf-miniview.o -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o samtools bam.o bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o ./lz4/lz4.o libst.a -lhts -lncursesw -lm -lz  -lpthread
In function ‘bcf_call_glfgen’,
    inlined from ‘tv_pl_func’ at bam_tview.c:196:9:
bam2bcf.c:81:33: warning: argument 2 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   81 |         bca->bases = (uint16_t*)realloc(bca->bases, 2 * bca->max_bases);
      |                                 ^
/usr/include/stdlib.h: In function ‘tv_pl_func’:
/usr/include/stdlib.h:683:14: note: in a call to allocation function ‘realloc’ declared here
  683 | extern void *realloc (void *__ptr, size_t __size)
      |              ^
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.YeE4Wr
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64
++ dirname /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/man/man1
/usr/bin/install -p samtools /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin
/usr/bin/install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin
/usr/bin/install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin
/usr/bin/install -p -m 644 doc/samtools*.1 misc/wgsim.1 /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/man/man1
++ grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/ace2sam /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/blast2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/bowtie2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/export2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/fasta-sanitize.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/interpolate_sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/maq2sam-long /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/maq2sam-short /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/md5fa /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/md5sum-lite /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/novo2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/plot-ampliconstats /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/plot-bamstats /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/psl2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/sam2vcf.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/samtools /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/samtools.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/seq_cache_populate.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/soap2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/wgsim_eval.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/zoom2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/blast2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/bowtie2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/export2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/fasta-sanitize.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/interpolate_sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/novo2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/plot-ampliconstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/plot-bamstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/psl2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/sam2vcf.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/samtools.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/seq_cache_populate.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/soap2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/wgsim_eval.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/bin/zoom2sam.pl
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.15.1-3.fc40 --unique-debug-suffix -1.15.1-3.fc40.aarch64 --unique-debug-src-base samtools-1.15.1-3.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/samtools-1.15.1
find-debuginfo: starting
Extracting debug info from 7 files
DWARF-compressing 7 files
sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/samtools-1.15.1-3.fc40.aarch64
2442 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.fRpfxC
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ ldd samtools
+ grep -E '/lib(64)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x0000ffff91b00000)
+ make test
test/split/test_count_rg
test/split/test_expand_format_string
test/split/test_filter_header_rg
test/split/test_parse_args
REF_PATH=: test/test.pl --exec bgzip= ${TEST_OPTS:-}
bgzip -c -b 65272 -s 5 /tmp/Of2twowlXD/bgzip.dat.gz
.. ok

bgzip -c -b 979200 -s 6 /tmp/Of2twowlXD/bgzip.dat.gz
.. ok

bgzip -c -b 652804 -s 6 /tmp/Of2twowlXD/bgzip.dat.gz
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/Of2twowlXD/faidx.fa 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/Of2twowlXD/faidx.fa.gz 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/Of2twowlXD/faidx.fa 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/Of2twowlXD/faidx.fa.gz 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/Of2twowlXD/faidx.fa 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/Of2twowlXD/faidx.fa.gz 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/Of2twowlXD/faidx.fa 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/Of2twowlXD/faidx.fa.gz 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/Of2twowlXD/fqidx.fq 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/Of2twowlXD/fqidx.fq.gz 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/Of2twowlXD/fqidx.fq 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/Of2twowlXD/fqidx.fq.gz 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/Of2twowlXD/fqidx.fq 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/Of2twowlXD/fqidx.fq.gz 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/Of2twowlXD/fqidx.fq 1:99998-100007
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/Of2twowlXD/fqidx.fq.gz 1:99998-100007
.. ok

.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/Of2twowlXD/dict.fa.gz
.. ok

test_dict:
	cat /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa | /builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -AH < /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.alias.fa
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/Of2twowlXD/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/Of2twowlXD/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/Of2twowlXD/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/Of2twowlXD/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/Of2twowlXD/auto_indexed.csi && cat /tmp/Of2twowlXD/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/Of2twowlXD/auto_indexed.crai && cat /tmp/Of2twowlXD/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/Of2twowlXD/auto_indexed.csi && cat /tmp/Of2twowlXD/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/Of2twowlXD/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/Of2twowlXD/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/Of2twowlXD/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/Of2twowlXD/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/Of2twowlXD/auto_indexed.csi && cat /tmp/Of2twowlXD/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/Of2twowlXD/auto_indexed.crai && cat /tmp/Of2twowlXD/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/Of2twowlXD/auto_indexed.csi && cat /tmp/Of2twowlXD/auto_indexed.csi
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/Of2twowlXD/mpileup.bam.list -f /tmp/Of2twowlXD/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/Of2twowlXD/mpileup.cram.list -f /tmp/Of2twowlXD/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/Of2twowlXD/mpileup.bam.urllist -f /tmp/Of2twowlXD/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/Of2twowlXD/mpileup.cram.urllist -f /tmp/Of2twowlXD/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/Of2twowlXD/mpileup.ref.fa.gz -r17:1050-1060 /tmp/Of2twowlXD/mpileup.1.bam | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/Of2twowlXD/mpileup.ref.fa.gz -r17:1050-1060 /tmp/Of2twowlXD/mpileup.1.cram | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup /builddir/build/BUILD/samtools-1.15.1/test/mpileup/overlap.bam | grep 128814202
test/test.pl: no IO::Pty module or can't open pty; skipping usage tests
.. ok

test_usage:
	samtools
test_view:
	Generating test data file .................. done
	1: SAM -> BAM -> SAM                                        .. ok

	2: SAM -> uncompressed BAM                                  .. ok

	3: uncompressed BAM -> SAM and compare                      .. ok

	4: SAM -> fast compressed BAM                               .. ok

	5: fast compressed BAM -> SAM and compare                   .. ok

	6: SAM -> CRAM -> SAM (UR header tags)                      .. ok

	7: SAM -> CRAM -> SAM (M5 header tags)                      .. ok

	8: BAM -> CRAM with UR -> SAM                               .. ok

	9: SAM -> BAM (M5 header tags)                              .. ok

	10: SAM -> BAM -> CRAM -> SAM (M5 header tags)              .. ok

	11: CRAM -> BAM with UR                                     .. ok

	12: CRAM -> BAM with M5                                     .. ok

	13: SAM -> SAM via stdout                                   .. ok

	14: SAM -> BAM via stdout                                   .. ok

	15: SAM -> CRAM via stdout                                  .. ok

	16: SAM from stdin -> SAM                                   .. ok

	17: BAM from stdin -> SAM                                   .. ok

	18: CRAM from stdin -> SAM                                  .. ok

	19: samtools view -H (SAM input)                            .. ok

	20: samtools view -H (BAM input)                            .. ok

	21: samtools view -H (CRAM input)                           .. ok

	22: No headers (SAM input)                                  .. ok

	23: No headers (BAM input)                                  .. ok

	24: No headers (CRAM input)                                 .. ok

	25: Filter -f 128 (SAM input)                               .. ok

	26: Count -f 128 (SAM input)                                .. ok

	27: Filter -f 128 (BAM input)                               .. ok

	28: Count -f 128 (BAM input)                                .. ok

	29: Filter -f 128 (CRAM input)                              .. ok

	30: Count -f 128 (CRAM input)                               .. ok

	31: Filter -F 128 (SAM input)                               .. ok

	32: Count -F 128 (SAM input)                                .. ok

	33: Filter -F 128 (BAM input)                               .. ok

	34: Count -F 128 (BAM input)                                .. ok

	35: Filter -F 128 (CRAM input)                              .. ok

	36: Count -F 128 (CRAM input)                               .. ok

	37: Filter -F 128 -f 2 (SAM input)                          .. ok

	38: Count -F 128 -f 2 (SAM input)                           .. ok

	39: Filter -F 128 -f 2 (BAM input)                          .. ok

	40: Count -F 128 -f 2 (BAM input)                           .. ok

	41: Filter -F 128 -f 2 (CRAM input)                         .. ok

	42: Count -F 128 -f 2 (CRAM input)                          .. ok

	43: Filter -r grp2 (SAM input)                              .. ok

	44: Count -r grp2 (SAM input)                               .. ok

	45: Filter -r grp2 (BAM input)                              .. ok

	46: Count -r grp2 (BAM input)                               .. ok

	47: Filter -r grp2 (CRAM input)                             .. ok

	48: Count -r grp2 (CRAM input)                              .. ok

	49: Filter -R /tmp/Of2twowlXD/view.001.fogn (SAM input)     .. ok

	50: Count -R /tmp/Of2twowlXD/view.001.fogn (SAM input)      .. ok

	51: Filter -R /tmp/Of2twowlXD/view.001.fogn (BAM input)     .. ok

	52: Count -R /tmp/Of2twowlXD/view.001.fogn (BAM input)      .. ok

	53: Filter -R /tmp/Of2twowlXD/view.001.fogn (CRAM input)    .. ok

	54: Count -R /tmp/Of2twowlXD/view.001.fogn (CRAM input)     .. ok

	55: Filter -R /tmp/Of2twowlXD/view.001.fogn -r grp2 (SAM input).. ok

	56: Count -R /tmp/Of2twowlXD/view.001.fogn -r grp2 (SAM input).. ok

	57: Filter -R /tmp/Of2twowlXD/view.001.fogn -r grp2 (BAM input).. ok

	58: Count -R /tmp/Of2twowlXD/view.001.fogn -r grp2 (BAM input).. ok

	59: Filter -R /tmp/Of2twowlXD/view.001.fogn -r grp2 (CRAM input).. ok

	60: Count -R /tmp/Of2twowlXD/view.001.fogn -r grp2 (CRAM input).. ok

	61: Filter -r grp2 -R /tmp/Of2twowlXD/view.001.fogn (SAM input).. ok

	62: Count -r grp2 -R /tmp/Of2twowlXD/view.001.fogn (SAM input).. ok

	63: Filter -r grp2 -R /tmp/Of2twowlXD/view.001.fogn (BAM input).. ok

	64: Count -r grp2 -R /tmp/Of2twowlXD/view.001.fogn (BAM input).. ok

	65: Filter -r grp2 -R /tmp/Of2twowlXD/view.001.fogn (CRAM input).. ok

	66: Count -r grp2 -R /tmp/Of2twowlXD/view.001.fogn (CRAM input).. ok

	67: Filter -N /tmp/Of2twowlXD/view.001.forn (SAM input)     .. ok

	68: Count -N /tmp/Of2twowlXD/view.001.forn (SAM input)      .. ok

	69: Filter -N /tmp/Of2twowlXD/view.001.forn (BAM input)     .. ok

	70: Count -N /tmp/Of2twowlXD/view.001.forn (BAM input)      .. ok

	71: Filter -N /tmp/Of2twowlXD/view.001.forn (CRAM input)    .. ok

	72: Count -N /tmp/Of2twowlXD/view.001.forn (CRAM input)     .. ok

	73: Filter -d BC (SAM input)                                .. ok

	74: Count -d BC (SAM input)                                 .. ok

	75: Filter -d BC (BAM input)                                .. ok

	76: Count -d BC (BAM input)                                 .. ok

	77: Filter -d BC (CRAM input)                               .. ok

	78: Count -d BC (CRAM input)                                .. ok

	79: Filter -d BC:TGCA (SAM input)                           .. ok

	80: Count -d BC:TGCA (SAM input)                            .. ok

	81: Filter -d BC:TGCA (BAM input)                           .. ok

	82: Count -d BC:TGCA (BAM input)                            .. ok

	83: Filter -d BC:TGCA (CRAM input)                          .. ok

	84: Count -d BC:TGCA (CRAM input)                           .. ok

	85: Filter -D BC:/tmp/Of2twowlXD/view.001.fobc (SAM input)  .. ok

	86: Count -D BC:/tmp/Of2twowlXD/view.001.fobc (SAM input)   .. ok

	87: Filter -D BC:/tmp/Of2twowlXD/view.001.fobc (BAM input)  .. ok

	88: Count -D BC:/tmp/Of2twowlXD/view.001.fobc (BAM input)   .. ok

	89: Filter -D BC:/tmp/Of2twowlXD/view.001.fobc (CRAM input) .. ok

	90: Count -D BC:/tmp/Of2twowlXD/view.001.fobc (CRAM input)  .. ok

	91: Filter -D BC:/tmp/Of2twowlXD/view.001.fobc -d BC:TGCA (SAM input).. ok

	92: Count -D BC:/tmp/Of2twowlXD/view.001.fobc -d BC:TGCA (SAM input).. ok

	93: Filter -D BC:/tmp/Of2twowlXD/view.001.fobc -d BC:TGCA (BAM input).. ok

	94: Count -D BC:/tmp/Of2twowlXD/view.001.fobc -d BC:TGCA (BAM input).. ok

	95: Filter -D BC:/tmp/Of2twowlXD/view.001.fobc -d BC:TGCA (CRAM input).. ok

	96: Count -D BC:/tmp/Of2twowlXD/view.001.fobc -d BC:TGCA (CRAM input).. ok

	97: Filter -d BC:TGCA -D BC:/tmp/Of2twowlXD/view.001.fobc (SAM input).. ok

	98: Count -d BC:TGCA -D BC:/tmp/Of2twowlXD/view.001.fobc (SAM input).. ok

	99: Filter -d BC:TGCA -D BC:/tmp/Of2twowlXD/view.001.fobc (BAM input).. ok

	100: Count -d BC:TGCA -D BC:/tmp/Of2twowlXD/view.001.fobc (BAM input).. ok

	101: Filter -d BC:TGCA -D BC:/tmp/Of2twowlXD/view.001.fobc (CRAM input).. ok

	102: Count -d BC:TGCA -D BC:/tmp/Of2twowlXD/view.001.fobc (CRAM input).. ok

	103: Filter -D RG:/tmp/Of2twowlXD/view.001.fogn (SAM input) .. ok

	104: Count -D RG:/tmp/Of2twowlXD/view.001.fogn (SAM input)  .. ok

	105: Filter -D RG:/tmp/Of2twowlXD/view.001.fogn (BAM input) .. ok

	106: Count -D RG:/tmp/Of2twowlXD/view.001.fogn (BAM input)  .. ok

	107: Filter -D RG:/tmp/Of2twowlXD/view.001.fogn (CRAM input).. ok

	108: Count -D RG:/tmp/Of2twowlXD/view.001.fogn (CRAM input) .. ok

	109: Filter -d NE:TGCA (SAM input)                          .. ok

	110: Count -d NE:TGCA (SAM input)                           .. ok

	111: Filter -d NE:TGCA (BAM input)                          .. ok

	112: Count -d NE:TGCA (BAM input)                           .. ok

	113: Filter -d NE:TGCA (CRAM input)                         .. ok

	114: Count -d NE:TGCA (CRAM input)                          .. ok

	115: Filter -d TGCA (SAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test115.sam -h -d TGCA /tmp/Of2twowlXD/view.001.sam --no-PG


.. expected failure

	116: Count -d TGCA (SAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/Of2twowlXD/view.001.sam --no-PG


.. expected failure

	117: Filter -d TGCA (BAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test117.sam -h -d TGCA /tmp/Of2twowlXD/view.test001.bam --no-PG


.. expected failure

	118: Count -d TGCA (BAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/Of2twowlXD/view.test001.bam --no-PG


.. expected failure

	119: Filter -d TGCA (CRAM input)                            samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test119.sam -h -d TGCA /tmp/Of2twowlXD/view.test006.cram --no-PG


.. expected failure

	120: Count -d TGCA (CRAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/Of2twowlXD/view.test006.cram --no-PG


.. expected failure

	121: Filter -D BClong:/tmp/Of2twowlXD/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/Of2twowlXD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test121.sam -h -D BClong:/tmp/Of2twowlXD/view.001.fobc /tmp/Of2twowlXD/view.001.sam --no-PG


.. expected failure

	122: Count -D BClong:/tmp/Of2twowlXD/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/Of2twowlXD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/Of2twowlXD/view.001.fobc /tmp/Of2twowlXD/view.001.sam --no-PG


.. expected failure

	123: Filter -D BClong:/tmp/Of2twowlXD/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/Of2twowlXD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test123.sam -h -D BClong:/tmp/Of2twowlXD/view.001.fobc /tmp/Of2twowlXD/view.test001.bam --no-PG


.. expected failure

	124: Count -D BClong:/tmp/Of2twowlXD/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/Of2twowlXD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/Of2twowlXD/view.001.fobc /tmp/Of2twowlXD/view.test001.bam --no-PG


.. expected failure

	125: Filter -D BClong:/tmp/Of2twowlXD/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/Of2twowlXD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test125.sam -h -D BClong:/tmp/Of2twowlXD/view.001.fobc /tmp/Of2twowlXD/view.test006.cram --no-PG


.. expected failure

	126: Count -D BClong:/tmp/Of2twowlXD/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/Of2twowlXD/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/Of2twowlXD/view.001.fobc /tmp/Of2twowlXD/view.test006.cram --no-PG


.. expected failure

	127: Filter -d BC:ACGT -d RG:grp2 (SAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/Of2twowlXD/view.001.sam --no-PG


.. expected failure

	128: Count -d BC:ACGT -d RG:grp2 (SAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/Of2twowlXD/view.001.sam --no-PG


.. expected failure

	129: Filter -d BC:ACGT -d RG:grp2 (BAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/Of2twowlXD/view.test001.bam --no-PG


.. expected failure

	130: Count -d BC:ACGT -d RG:grp2 (BAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/Of2twowlXD/view.test001.bam --no-PG


.. expected failure

	131: Filter -d BC:ACGT -d RG:grp2 (CRAM input)              samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/Of2twowlXD/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/Of2twowlXD/view.test006.cram --no-PG


.. expected failure

	132: Count -d BC:ACGT -d RG:grp2 (CRAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/Of2twowlXD/view.test006.cram --no-PG


.. expected failure

	133: Filter -d NM:13 (SAM input)                            .. ok

	134: Count -d NM:13 (SAM input)                             .. ok

	135: Filter -d NM:13 (BAM input)                            .. ok

	136: Count -d NM:13 (BAM input)                             .. ok

	137: Filter -d NM:13 (CRAM input)                           .. ok

	138: Count -d NM:13 (CRAM input)                            .. ok

	139: Filter -d ab:z (SAM input)                             .. ok

	140: Count -d ab:z (SAM input)                              .. ok

	141: Filter -d ab:z (BAM input)                             .. ok

	142: Count -d ab:z (BAM input)                              .. ok

	143: Filter -d ab:z (CRAM input)                            .. ok

	144: Count -d ab:z (CRAM input)                             .. ok

	145: Filter -l Library 2 (SAM input)                        .. ok

	146: Count -l Library 2 (SAM input)                         .. ok

	147: Filter -l Library 2 (BAM input)                        .. ok

	148: Count -l Library 2 (BAM input)                         .. ok

	149: Filter -l Library 2 (CRAM input)                       .. ok

	150: Count -l Library 2 (CRAM input)                        .. ok

	151: Filter -l Library 3 (SAM input)                        .. ok

	152: Count -l Library 3 (SAM input)                         .. ok

	153: Filter -l Library 3 (BAM input)                        .. ok

	154: Count -l Library 3 (BAM input)                         .. ok

	155: Filter -l Library 3 (CRAM input)                       .. ok

	156: Count -l Library 3 (CRAM input)                        .. ok

	157: Filter -q 50 (SAM input)                               .. ok

	158: Count -q 50 (SAM input)                                .. ok

	159: Filter -q 50 (BAM input)                               .. ok

	160: Count -q 50 (BAM input)                                .. ok

	161: Filter -q 50 (CRAM input)                              .. ok

	162: Count -q 50 (CRAM input)                               .. ok

	163: Filter -q 99 (SAM input)                               .. ok

	164: Count -q 99 (SAM input)                                .. ok

	165: Filter -q 99 (BAM input)                               .. ok

	166: Count -q 99 (BAM input)                                .. ok

	167: Filter -q 99 (CRAM input)                              .. ok

	168: Count -q 99 (CRAM input)                               .. ok

	169: Filter -q 100 (SAM input)                              .. ok

	170: Count -q 100 (SAM input)                               .. ok

	171: Filter -q 100 (BAM input)                              .. ok

	172: Count -q 100 (BAM input)                               .. ok

	173: Filter -q 100 (CRAM input)                             .. ok

	174: Count -q 100 (CRAM input)                              .. ok

	175: Filter -x fa (SAM input)                               .. ok

	176: Count -x fa (SAM input)                                .. ok

	177: Filter -x fa (BAM input)                               .. ok

	178: Count -x fa (BAM input)                                .. ok

	179: Filter -x fa (CRAM input)                              .. ok

	180: Count -x fa (CRAM input)                               .. ok

	181: Filter -x fa -x ha (SAM input)                         .. ok

	182: Count -x fa -x ha (SAM input)                          .. ok

	183: Filter -x fa -x ha (BAM input)                         .. ok

	184: Count -x fa -x ha (BAM input)                          .. ok

	185: Filter -x fa -x ha (CRAM input)                        .. ok

	186: Count -x fa -x ha (CRAM input)                         .. ok

	187: Filter -x fa,ha (SAM input)                            .. ok

	188: Count -x fa,ha (SAM input)                             .. ok

	189: Filter -x fa,ha (BAM input)                            .. ok

	190: Count -x fa,ha (BAM input)                             .. ok

	191: Filter -x fa,ha (CRAM input)                           .. ok

	192: Count -x fa,ha (CRAM input)                            .. ok

	193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	205: Filter -x fa -r grp2 (SAM input)                       .. ok

	206: Count -x fa -r grp2 (SAM input)                        .. ok

	207: Filter -x fa -r grp2 (BAM input)                       .. ok

	208: Count -x fa -r grp2 (BAM input)                        .. ok

	209: Filter -x fa -r grp2 (CRAM input)                      .. ok

	210: Count -x fa -r grp2 (CRAM input)                       .. ok

	211: Filter -x RG -r grp2 (SAM input)                       .. ok

	212: Count -x RG -r grp2 (SAM input)                        .. ok

	213: Filter -x RG -r grp2 (BAM input)                       .. ok

	214: Count -x RG -r grp2 (BAM input)                        .. ok

	215: Filter -x RG -r grp2 (CRAM input)                      .. ok

	216: Count -x RG -r grp2 (CRAM input)                       .. ok

	217: Filter -m 10 (SAM input)                               .. ok

	218: Count -m 10 (SAM input)                                .. ok

	219: Filter -m 10 (BAM input)                               .. ok

	220: Count -m 10 (BAM input)                                .. ok

	221: Filter -m 10 (CRAM input)                              .. ok

	222: Count -m 10 (CRAM input)                               .. ok

	223: Filter -m 11 (SAM input)                               .. ok

	224: Count -m 11 (SAM input)                                .. ok

	225: Filter -m 11 (BAM input)                               .. ok

	226: Count -m 11 (BAM input)                                .. ok

	227: Filter -m 11 (CRAM input)                              .. ok

	228: Count -m 11 (CRAM input)                               .. ok

	229: Filter -m 15 (SAM input)                               .. ok

	230: Count -m 15 (SAM input)                                .. ok

	231: Filter -m 15 (BAM input)                               .. ok

	232: Count -m 15 (BAM input)                                .. ok

	233: Filter -m 15 (CRAM input)                              .. ok

	234: Count -m 15 (CRAM input)                               .. ok

	235: Filter -m 16 (SAM input)                               .. ok

	236: Count -m 16 (SAM input)                                .. ok

	237: Filter -m 16 (BAM input)                               .. ok

	238: Count -m 16 (BAM input)                                .. ok

	239: Filter -m 16 (CRAM input)                              .. ok

	240: Count -m 16 (CRAM input)                               .. ok

	241: Filter -e !(flag & 128) && (flag & 2) (SAM input)      .. ok

	242: Count -e !(flag & 128) && (flag & 2) (SAM input)       .. ok

	243: Filter -e !(flag & 128) && (flag & 2) (BAM input)      .. ok

	244: Count -e !(flag & 128) && (flag & 2) (BAM input)       .. ok

	245: Filter -e !(flag & 128) && (flag & 2) (CRAM input)     .. ok

	246: Count -e !(flag & 128) && (flag & 2) (CRAM input)      .. ok

	247: Filter -e [BC] (SAM input)                             .. ok

	248: Count -e [BC] (SAM input)                              .. ok

	249: Filter -e [BC] (BAM input)                             .. ok

	250: Count -e [BC] (BAM input)                              .. ok

	251: Filter -e [BC] (CRAM input)                            .. ok

	252: Count -e [BC] (CRAM input)                             .. ok

	253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	259: Filter -e mapq >= 50 (SAM input)                       .. ok

	260: Count -e mapq >= 50 (SAM input)                        .. ok

	261: Filter -e mapq >= 50 (BAM input)                       .. ok

	262: Count -e mapq >= 50 (BAM input)                        .. ok

	263: Filter -e mapq >= 50 (CRAM input)                      .. ok

	264: Count -e mapq >= 50 (CRAM input)                       .. ok

	265: Filter -e mapq >= 99 (SAM input)                       .. ok

	266: Count -e mapq >= 99 (SAM input)                        .. ok

	267: Filter -e mapq >= 99 (BAM input)                       .. ok

	268: Count -e mapq >= 99 (BAM input)                        .. ok

	269: Filter -e mapq >= 99 (CRAM input)                      .. ok

	270: Count -e mapq >= 99 (CRAM input)                       .. ok

	271: Filter -e mapq >= 100 (SAM input)                      .. ok

	272: Count -e mapq >= 100 (SAM input)                       .. ok

	273: Filter -e mapq >= 100 (BAM input)                      .. ok

	274: Count -e mapq >= 100 (BAM input)                       .. ok

	275: Filter -e mapq >= 100 (CRAM input)                     .. ok

	276: Count -e mapq >= 100 (CRAM input)                      .. ok

	277: 1bp reads file SAM -> BAM -> SAM                       .. ok

	278: 1bp reads file SAM -> CRAM -> SAM                      .. ok

	278: Region  Z (BAM input)                                  .. ok

	279: Count  Z (BAM input)                                   .. ok

	280: Region  Z (CRAM input)                                 .. ok

	281: Count  Z (CRAM input)                                  .. ok

	282: Region  Z:30 (BAM input)                               .. ok

	283: Count  Z:30 (BAM input)                                .. ok

	284: Region  Z:30 (CRAM input)                              .. ok

	285: Count  Z:30 (CRAM input)                               .. ok

	286: Region  Z:20-40 (BAM input)                            .. ok

	287: Count  Z:20-40 (BAM input)                             .. ok

	288: Region  Z:20-40 (CRAM input)                           .. ok

	289: Count  Z:20-40 (CRAM input)                            .. ok

	290: Region  ref1 (BAM input)                               .. ok

	291: Count  ref1 (BAM input)                                .. ok

	292: Region  ref1 (CRAM input)                              .. ok

	293: Count  ref1 (CRAM input)                               .. ok

	294: Region  ref1:15 (BAM input)                            .. ok

	295: Count  ref1:15 (BAM input)                             .. ok

	296: Region  ref1:15 (CRAM input)                           .. ok

	297: Count  ref1:15 (CRAM input)                            .. ok

	298: Region  ref1:15-45 (BAM input)                         .. ok

	299: Count  ref1:15-45 (BAM input)                          .. ok

	300: Region  ref1:15-45 (CRAM input)                        .. ok

	301: Count  ref1:15-45 (CRAM input)                         .. ok

	302: Region  ref1:15-45 ref2 (BAM input)                    .. ok

	303: Count  ref1:15-45 ref2 (BAM input)                     .. ok

	304: Region  ref1:15-45 ref2 (CRAM input)                   .. ok

	305: Count  ref1:15-45 ref2 (CRAM input)                    .. ok

	306: Region  ref1:15-45 ref2:16 (BAM input)                 .. ok

	307: Count  ref1:15-45 ref2:16 (BAM input)                  .. ok

	308: Region  ref1:15-45 ref2:16 (CRAM input)                .. ok

	309: Count  ref1:15-45 ref2:16 (CRAM input)                 .. ok

	310: Region  ref1:15-45 ref2:16-31 (BAM input)              .. ok

	311: Count  ref1:15-45 ref2:16-31 (BAM input)               .. ok

	312: Region  ref1:15-45 ref2:16-31 (CRAM input)             .. ok

	313: Count  ref1:15-45 ref2:16-31 (CRAM input)              .. ok

	314: Region  ref1:15-15 ref1:45-45 (BAM input)              .. ok

	315: Count  ref1:15-15 ref1:45-45 (BAM input)               .. ok

	316: Region  ref1:15-15 ref1:45-45 (CRAM input)             .. ok

	317: Count  ref1:15-15 ref1:45-45 (CRAM input)              .. ok

	318: Region -f 128 ref1 (BAM input)                         .. ok

	319: Count -f 128 ref1 (BAM input)                          .. ok

	320: Region -f 128 ref1 (CRAM input)                        .. ok

	321: Count -f 128 ref1 (CRAM input)                         .. ok

	322: Region -q 50 ref1:15-45 (BAM input)                    .. ok

	323: Count -q 50 ref1:15-45 (BAM input)                     .. ok

	324: Region -q 50 ref1:15-45 (CRAM input)                   .. ok

	325: Count -q 50 ref1:15-45 (CRAM input)                    .. ok

	326: Region -r grp2 ref1:15-45 (BAM input)                  .. ok

	327: Count -r grp2 ref1:15-45 (BAM input)                   .. ok

	328: Region -r grp2 ref1:15-45 (CRAM input)                 .. ok

	329: Count -r grp2 ref1:15-45 (CRAM input)                  .. ok

	330: Region  * (BAM input)                                  .. ok

	331: Count  * (BAM input)                                   .. ok

	332: Region  * (CRAM input)                                 .. ok

	333: Count  * (CRAM input)                                  .. ok

	334: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	335: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	336: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	337: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	338: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	339: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	340: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	341: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	342: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	343: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	344: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	345: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	346: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	347: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	348: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	349: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	350: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	351: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	352: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	353: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	354: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	355: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	356: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	357: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	358: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	359: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	360: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	361: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	362: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	363: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	364: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	365: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	366: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	367: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	368: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	369: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	370: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	371: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	372: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	373: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	374: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	375: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	376: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	377: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	378: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	379: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	380: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	381: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	382: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	383: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	384: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	385: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	386: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	387: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	388: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	389: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	390: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	391: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	392: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	393: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	394: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	395: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	396: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	397: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	398: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	399: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	400: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	401: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	402: Make BAM with no M5/UR tags                            .. ok

	403: Add @SQ with -t (SAM -> SAM)                           .. ok

	404: Add @SQ with -T (SAM -> SAM)                           .. ok

	405: Add @SQ with -t (BAM -> SAM)                           .. ok

	406: Add @SQ with -T (BAM -> SAM)                           .. ok

	407: Add @SQ with -t (SAM -> BAM)                           .. ok

	408: Add @SQ with -T (SAM -> BAM)                           .. ok

	409: Add @SQ with -t (BAM -> BAM)                           .. ok

	410: Add @SQ with -T (BAM -> BAM)                           .. ok

	411: Add @SQ with -t (SAM -> CRAM)                          .. ok

	412: Add @SQ with -T (SAM -> CRAM)                          .. ok

	413: Add @SQ with -t (BAM -> CRAM)                          .. ok

	414: Add @SQ with -T (BAM -> CRAM)                          .. ok

	415: Make CRAM with no UR field                             .. ok

	416: Decoding CRAM with no UR field via -T                  .. ok

	417: CIGAR B-operator removal                               .. ok

	418: Big SAM -> BAM                                         .. ok

	419: Big SAM -> BAM (2 threads)                             .. ok

	420: Big SAM -> BAM (4 threads)                             .. ok

	421: Big SAM -> CRAM                                        .. ok

	422: Big SAM -> CRAM (2 threads)                            .. ok

	423: Big SAM -> CRAM (4 threads)                            .. ok

	424: Subsample 0.2 (SAM input) ............ ok

	425: Subsample 0.5 (SAM input) ............ ok

	426: Subsample 0.8 (SAM input) ............ ok

	427: Subsample 0.2 (BAM input) ............ ok

	428: Subsample 0.5 (BAM input) ............ ok

	429: Subsample 0.8 (BAM input) ............ ok

	430: Subsample 0.2 (CRAM input) ............ ok

	431: Subsample 0.5 (CRAM input) ............ ok

	432: Subsample 0.8 (CRAM input) ............ ok

	433: SAM add PG                                             .. ok

	434: Unset dup flag, remove dt and do tags                  .. ok

	435: Unmap dup flagged reads.                               .. ok

	436: Unmap dup flagged reads.                               .. ok

	437: fetch pairs                                            .. ok

	438: fetch pairs                                            .. ok

	439: fetch pairs                                            .. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 29 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 30 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 -n 5 < /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_cat:
	Generating test data file .................. done
	Generate BAM file #1                                        .. ok

	Generate CRAM file #1                                       .. ok

	Generating test data file .................. done
	Generate BAM file #2                                        .. ok

	Generate CRAM file #2                                       .. ok

	Generating test data file .................. done
	Generate BAM file #3                                        .. ok

	Generate CRAM file #3                                       .. ok

	Generating test data file .................. done
	Generate BAM file #4                                        .. ok

	Generate CRAM file #4                                       .. ok

	1: cat BAM files                                            .. ok

	2: cat recompressed BAM files                               .. ok

	3: cat CRAM files                                           .. ok

	4: cat BAM files to stdout                                  .. ok

	5: cat recompressed BAM files to stdout                     .. ok

	6: cat CRAM files to stdout                                 .. ok

	7: cat BAM files with new header                            .. ok

	8: cat recompressed BAM files with new header               .. ok

	9: cat CRAM files with new header                           .. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -0 test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/5.s.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT,MD,ia -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG	ID:rgid'
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/2.interleaved.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/3.interleaved.fq -i
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T "*"
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T XZ,XA,AA
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ
.. ok

test_bam2fq:
	Generate BAM file                                           .. ok

	Generate CRAM file                                          .. ok

	1: fastq  (SAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input)                                      [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input)                                    [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -s /tmp/Of2twowlXD/bam2fq.discard.s.fq -0 /tmp/Of2twowlXD/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	Generate BAM file (2 threads)                               .. ok

	Generate CRAM file (2 threads)                              .. ok

	1: fastq  (SAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input) (2 threads)                          [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input) (2 threads)                        [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -s /tmp/Of2twowlXD/bam2fq.discard.s.fq -0 /tmp/Of2twowlXD/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_depad:
	Generate BAM file                                           .. ok

	depad  (SAM input)                                          .. ok

	depad -s (SAM input)                                        .. ok

	depad -u (SAM input)                                        .. ok

	depad -1 (SAM input)                                        .. ok

	depad  (BAM input)                                          .. ok

	depad -s (BAM input)                                        .. ok

	depad -u (BAM input)                                        .. ok

	depad -1 (BAM input)                                        .. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa -i 0 /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/10_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I s1 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp2 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp3 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I Sample /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam -b /tmp/vWrnKbCpoX - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/Of2twowlXD/merge.tag.1.bam /tmp/Of2twowlXD/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/Of2twowlXD/merge.tag.3.bam /tmp/Of2twowlXD/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/Of2twowlXD/merge.bed.1.bam /tmp/Of2twowlXD/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam -b /tmp/ntx5v3CtmB - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/Of2twowlXD/merge.tag.1.bam /tmp/Of2twowlXD/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/Of2twowlXD/merge.tag.3.bam /tmp/Of2twowlXD/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/Of2twowlXD/merge.bed.1.bam /tmp/Of2twowlXD/merge.bed.2.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/Of2twowlXD/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/Of2twowlXD/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/Of2twowlXD/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/Of2twowlXD/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/Of2twowlXD/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/Of2twowlXD/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -@ 2 -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.cram
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -v  /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -uv /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -j /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -g512 -G2048 /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/Of2twowlXD/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/Of2twowlXD/longref.sam.gz CHROMOSOME_I:10000000114-10000000168
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG -L /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /tmp/Of2twowlXD/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -O sam --no-PG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref_name.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam --no-PG - /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref2.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth -b /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/Of2twowlXD/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -n -m 10M test/large_pos/longref3.sam |
                     /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam --no-PG - - |
                     /builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -m 10M
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_hard_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped_strand.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_clipped.expected.sam | egrep -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconstats/mixed_clipped.sam | egrep -v 'Samtools version|Command line'
.. ok


Number of tests:
    total            .. 807
    passed           .. 776
    failed           .. 0
    expected failure .. 31
    unexpected pass  .. 0

test/merge/test_bam_translate test/merge/test_bam_translate.tmp
test/merge/test_rtrans_build
test/merge/test_trans_tbl_init
cd test/mpileup && AWK="gawk" ../regression.sh mpileup.reg

=== Testing mpileup.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools mpileup -ABQ0 -a -l xx.bed3 xx#depth3.bam

Expected   passes:   118
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh depth.reg

=== Testing depth.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools depth -a -b xx.bed3 xx#depth3.bam

Expected   passes:   47
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   62
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: samtools-1.15.1-3.fc40.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.kKqXBU
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ DOCDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/doc/samtools
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/AUTHORS /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/ChangeLog.old /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/NEWS /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/examples /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/doc/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.jSdbn3
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ LICENSEDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/licenses/samtools
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/licenses/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/LICENSE /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64/usr/share/licenses/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: samtools = 1.15.1-3.fc40 samtools(aarch-64) = 1.15.1-3.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libncursesw.so.6()(64bit) libtinfo.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: samtools-debugsource-1.15.1-3.fc40.aarch64
Provides: samtools-debugsource = 1.15.1-3.fc40 samtools-debugsource(aarch-64) = 1.15.1-3.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: samtools-debuginfo-1.15.1-3.fc40.aarch64
Provides: debuginfo(build-id) = 1955b51418b9a4f5500f8ea99cf5459d9d8bc1cd debuginfo(build-id) = 228a700ab769fc085da2019b0a54205033051bea debuginfo(build-id) = 77babd62139f49a1507f2936523735e2346482d9 debuginfo(build-id) = a8a8e53c7bcf04a761e48099192a9431c1cbab15 debuginfo(build-id) = ba9e68069e22b7f0234cf835b2b07e1de4ebf2a4 debuginfo(build-id) = db9f35ae4f54e196ca2ac05034902875c0b88539 debuginfo(build-id) = f17d2e60495ffb62874f155042d1af5b18cee9a9 samtools-debuginfo = 1.15.1-3.fc40 samtools-debuginfo(aarch-64) = 1.15.1-3.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: samtools-debugsource(aarch-64) = 1.15.1-3.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64
Wrote: /builddir/build/RPMS/samtools-1.15.1-3.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/samtools-debugsource-1.15.1-3.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/samtools-debuginfo-1.15.1-3.fc40.aarch64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.GgwFra
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.aarch64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.2FtQSk
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/samtools-1.15.1-SPECPARTS
+ rm -rf samtools-1.15.1 samtools-1.15.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild samtools-1.15.1-3.fc40.src.rpm
Finish: build phase for samtools-1.15.1-3.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1695062940.091470/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-aarch64-1695062940.091470/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-aarch64-1695062940.091470/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/samtools-1.15.1-3.fc40.src.rpm) Config(child) 0 minutes 57 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "samtools-debugsource",
            "epoch": null,
            "version": "1.15.1",
            "release": "3.fc40",
            "arch": "aarch64"
        },
        {
            "name": "samtools",
            "epoch": null,
            "version": "1.15.1",
            "release": "3.fc40",
            "arch": "src"
        },
        {
            "name": "samtools",
            "epoch": null,
            "version": "1.15.1",
            "release": "3.fc40",
            "arch": "aarch64"
        },
        {
            "name": "samtools-debuginfo",
            "epoch": null,
            "version": "1.15.1",
            "release": "3.fc40",
            "arch": "aarch64"
        }
    ]
}
RPMResults finished