Warning: Permanently added '23.20.210.116' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408570-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.69 PID: 11299 Logging PID: 11300 Task: {'appstream': False, 'background': True, 'build_id': 6408570, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd90ec6488e8c84044343d967e56d4d0262350e8a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.72-2', 'project_dirname': 'zlib-ng-compat-mpb', 'project_name': 'zlib-ng-compat-mpb', 'project_owner': 'tuliom', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom', 'source_json': {}, 'source_type': None, 'submitter': 'tuliom', 'tags': [], 'task_id': '6408570-fedora-rawhide-aarch64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn'... Running: git checkout d90ec6488e8c84044343d967e56d4d0262350e8a -- cmd: ['git', 'checkout', 'd90ec6488e8c84044343d967e56d4d0262350e8a', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn rc: 0 stdout: stderr: Note: switching to 'd90ec6488e8c84044343d967e56d4d0262350e8a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d90ec64 automatic import of smoldyn Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.72.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Smoldyn-2.72.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/smoldyn/Smoldyn-2.72.tar.gz/md5/55177f82859a034ac5418e6894089192/Smoldyn-2.72.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Dload Upload Total Spent Left Speed 100 96.4M 100 96.4M 0 0 174M 0 --:--:-- --:--:-- --:--:-- 174M INFO: Reading stdout from command: md5sum Smoldyn-2.72.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695459271.609342 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn/smoldyn.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.1.1 INFO: Mock Version: 5.1.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695459271.609342/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695459271.609342/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/4a5121601dbc816ebcac8f14482a73ae77ec5235171d2cb07e83cd0120003251/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/4a5121601dbc816ebcac8f14482a73ae77ec5235171d2cb07e83cd0120003251/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 61 MB/s | 13 MB 00:00 fedora 40 MB/s | 69 MB 00:01 Last metadata expiration check: 0:00:02 ago on Sat Sep 23 08:54:37 2023. Package python3-dnf-4.17.0-6.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k Installing dependencies: dbus-libs aarch64 1:1.14.10-1.fc40 fedora 156 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus aarch64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd aarch64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 4.6 M Downloading Packages: (1/7): dbus-libs-1.14.10-1.fc40.aarch64.rpm 8.4 MB/s | 156 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.aarch64.rpm 8.0 MB/s | 157 kB 00:00 (3/7): python3-distro-1.8.0-6.fc39.noarch.rpm 34 MB/s | 49 kB 00:00 (4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 16 MB/s | 355 kB 00:00 (5/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 110 MB/s | 293 kB 00:00 (6/7): python3-six-1.16.0-12.fc39.noarch.rpm 18 MB/s | 41 kB 00:00 (7/7): python3-systemd-235-5.fc39.aarch64.rpm 84 MB/s | 107 kB 00:00 -------------------------------------------------------------------------------- Total 3.5 MB/s | 1.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.aarch64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.aarch64 5/7 Installing : python3-dbus-1.3.2-4.fc39.aarch64 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.aarch64 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.aarch64 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.aarch64 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.aarch64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.aarch64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 78 kB/s | 1.5 kB 00:00 Copr repository 157 MB/s | 13 MB 00:00 fedora 372 kB/s | 11 kB 00:00 Last metadata expiration check: 0:00:02 ago on Sat Sep 23 08:55:00 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash aarch64 5.2.15-5.fc39 fedora 1.8 M bzip2 aarch64 1.0.8-16.fc39 fedora 52 k coreutils aarch64 9.4-1.fc40 fedora 1.2 M cpio aarch64 2.14-4.fc39 fedora 277 k diffutils aarch64 3.10-3.fc39 fedora 396 k fedora-release-common noarch 40-0.8 fedora 18 k findutils aarch64 1:4.9.0-6.fc40 fedora 495 k gawk aarch64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack aarch64 2.38.9000-9.fc40 fedora 74 k grep aarch64 3.11-5.fc40 fedora 296 k gzip aarch64 1.12-6.fc39 fedora 164 k info aarch64 7.0.3-3.fc39 fedora 179 k patch aarch64 2.7.6-22.fc39 fedora 123 k redhat-rpm-config noarch 270-1.fc40 copr_base 74 k rpm-build aarch64 4.19.0-1.fc40 fedora 79 k sed aarch64 4.8-14.fc39 fedora 304 k shadow-utils aarch64 2:4.14.0-1.fc40 fedora 1.3 M tar aarch64 2:1.35-2.fc40 fedora 854 k unzip aarch64 6.0-62.fc39 fedora 183 k util-linux aarch64 2.39.2-1.fc40 copr_base 1.1 M which aarch64 2.21-40.fc39 fedora 42 k xz aarch64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives aarch64 1.25-1.fc39 fedora 38 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs aarch64 3.1.2-4.fc40 fedora 118 k authselect aarch64 1.4.2-3.fc39 fedora 144 k authselect-libs aarch64 1.4.2-3.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils aarch64 2.41-5.fc40 fedora 6.7 M binutils-gold aarch64 2.41-5.fc40 fedora 948 k bzip2-libs aarch64 1.0.8-16.fc39 fedora 43 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k coreutils-common aarch64 9.4-1.fc40 fedora 2.1 M cracklib aarch64 2.9.11-2.fc40 copr_base 84 k crypto-policies noarch 20230920-1.git570ea89.fc40 fedora 99 k curl aarch64 8.3.0-1.fc40 copr_base 350 k cyrus-sasl-lib aarch64 2.1.28-11.fc40 copr_base 781 k debugedit aarch64 5.0-10.fc39 fedora 77 k dwz aarch64 0.15-3.fc39 fedora 136 k ed aarch64 1.19-4.fc39 fedora 78 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils aarch64 0.189-6.fc40 fedora 539 k elfutils-debuginfod-client aarch64 0.189-6.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k elfutils-libelf aarch64 0.189-6.fc40 fedora 194 k elfutils-libs aarch64 0.189-6.fc40 fedora 258 k fedora-gpg-keys noarch 40-0.1 fedora 130 k fedora-release noarch 40-0.8 fedora 8.1 k fedora-release-identity-basic noarch 40-0.8 fedora 8.9 k fedora-repos noarch 40-0.1 fedora 9.4 k fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k file aarch64 5.45-1.fc40 copr_base 50 k file-libs aarch64 5.45-1.fc40 copr_base 762 k filesystem aarch64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal aarch64 13.2-9.fc40 fedora 3.8 M gdbm-libs aarch64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 8.1 k glibc aarch64 2.38.9000-9.fc40 fedora 1.7 M glibc-common aarch64 2.38.9000-9.fc40 fedora 351 k glibc-gconv-extra aarch64 2.38.9000-9.fc40 fedora 2.0 M gmp aarch64 1:6.2.1-5.fc39 fedora 266 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k jansson aarch64 2.13.1-7.fc39 fedora 46 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs aarch64 1.6.1-7.fc39 fedora 31 k krb5-libs aarch64 1.21.2-1.fc40 fedora 772 k libacl aarch64 2.3.1-9.fc40 fedora 23 k libarchive aarch64 3.7.2-1.fc40 copr_base 403 k libattr aarch64 2.5.1-9.fc40 fedora 18 k libblkid aarch64 2.39.2-1.fc40 copr_base 116 k libbrotli aarch64 1.1.0-1.fc40 fedora 344 k libcap aarch64 2.48-7.fc39 fedora 68 k libcap-ng aarch64 0.8.3-8.fc40 fedora 32 k libcom_err aarch64 1.47.0-2.fc39 fedora 26 k libcurl aarch64 8.3.0-1.fc40 copr_base 337 k libdb aarch64 5.3.28-58.fc40 copr_base 735 k libeconf aarch64 0.5.2-1.fc40 fedora 30 k libevent aarch64 2.1.12-9.fc39 fedora 254 k libfdisk aarch64 2.39.2-1.fc40 copr_base 158 k libffi aarch64 3.4.4-4.fc39 fedora 38 k libgcc aarch64 13.2.1-3.fc40 fedora 95 k libgomp aarch64 13.2.1-3.fc40 fedora 312 k libidn2 aarch64 2.3.4-3.fc39 fedora 118 k libmount aarch64 2.39.2-1.fc40 copr_base 153 k libnghttp2 aarch64 1.56.0-1.fc40 copr_base 76 k libnsl2 aarch64 2.0.0-6.fc39 fedora 30 k libpkgconf aarch64 1.9.5-2.fc39 fedora 38 k libpsl aarch64 0.21.2-4.fc39 fedora 63 k libpwquality aarch64 1.4.5-6.fc39 fedora 120 k libselinux aarch64 3.5-5.fc39 fedora 86 k libsemanage aarch64 3.5-4.fc39 fedora 117 k libsepol aarch64 3.5-2.fc39 fedora 311 k libsigsegv aarch64 2.14-5.fc39 fedora 27 k libsmartcols aarch64 2.39.2-1.fc40 copr_base 66 k libssh aarch64 0.10.5-2.fc40 copr_base 212 k libssh-config noarch 0.10.5-2.fc40 copr_base 9.7 k libstdc++ aarch64 13.2.1-3.fc40 fedora 811 k libtasn1 aarch64 4.19.0-3.fc39 fedora 73 k libtirpc aarch64 1.3.3-1.rc2.fc39 fedora 95 k libunistring aarch64 1.1-5.fc40 fedora 540 k libutempter aarch64 1.2.1-10.fc39 fedora 27 k libuuid aarch64 2.39.2-1.fc40 copr_base 28 k libverto aarch64 0.3.2-6.fc39 fedora 21 k libxcrypt aarch64 4.4.36-2.fc39 fedora 123 k libxml2 aarch64 2.11.5-1.fc40 copr_base 687 k libzstd aarch64 1.5.5-4.fc40 copr_base 281 k lua-libs aarch64 5.4.6-3.fc39 fedora 131 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs aarch64 1.9.4-4.fc39 fedora 68 k mpfr aarch64 4.2.0-3.fc39 fedora 319 k ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k ncurses-libs aarch64 6.4-7.20230520.fc40 fedora 326 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap aarch64 2.6.6-1.fc39 fedora 251 k openssl-libs aarch64 1:3.1.1-4.fc40 copr_base 2.0 M p11-kit aarch64 0.25.0-2.fc39 fedora 481 k p11-kit-trust aarch64 0.25.0-2.fc39 fedora 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam aarch64 1.5.3-2.fc39 fedora 558 k pam-libs aarch64 1.5.3-2.fc39 fedora 58 k pcre2 aarch64 10.42-1.fc39.2 fedora 219 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf aarch64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config aarch64 1.9.5-2.fc39 fedora 9.6 k popt aarch64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k qt6-srpm-macros noarch 6.5.2-3.fc40 fedora 9.0 k readline aarch64 8.2-4.fc39 fedora 211 k rpm aarch64 4.19.0-1.fc40 fedora 537 k rpm-build-libs aarch64 4.19.0-1.fc40 fedora 92 k rpm-libs aarch64 4.19.0-1.fc40 fedora 306 k rpm-sequoia aarch64 1.5.0-1.fc40 fedora 842 k rust-srpm-macros noarch 24-5.fc40 fedora 12 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs aarch64 3.43.1-1.fc40 fedora 679 k systemd-libs aarch64 254.2-12.fc40 fedora 666 k util-linux-core aarch64 2.39.2-1.fc40 copr_base 477 k xxhash-libs aarch64 0.8.2-1.fc39 fedora 35 k xz-libs aarch64 5.4.4-1.fc39 fedora 106 k zip aarch64 3.0-39.fc40 fedora 262 k zlib-ng-compat aarch64 2.1.3-5.fc40 copr_base 66 k zstd aarch64 1.5.5-4.fc40 copr_base 446 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 52 M Installed size: 303 M Downloading Packages: [SKIPPED] cracklib-2.9.11-2.fc40.aarch64.rpm: Already downloaded [SKIPPED] curl-8.3.0-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc40.aarch64.rpm: Already downloaded [SKIPPED] file-5.45-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] file-libs-5.45-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libarchive-3.7.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libblkid-2.39.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libcurl-8.3.0-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-58.fc40.aarch64.rpm: Already downloaded [SKIPPED] libfdisk-2.39.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libmount-2.39.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libnghttp2-1.56.0-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libsmartcols-2.39.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libssh-0.10.5-2.fc40.aarch64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.5-2.fc40.noarch.rpm: Already downloaded [SKIPPED] libuuid-2.39.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libxml2-2.11.5-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libzstd-1.5.5-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] openssl-libs-3.1.1-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-270-1.fc40.noarch.rpm: Already downloaded [SKIPPED] util-linux-2.39.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] util-linux-core-2.39.2-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] zlib-ng-compat-2.1.3-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] zstd-1.5.5-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] alternatives-1.25-1.fc39.aarch64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] authselect-1.4.2-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-5.fc39.aarch64.rpm: Already downloaded [SKIPPED] binutils-2.41-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] binutils-gold-2.41-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.aarch64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.aarch64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.4-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] coreutils-common-9.4-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] cpio-2.14-4.fc39.aarch64.rpm: Already downloaded [SKIPPED] crypto-policies-20230920-1.git570ea89.fc40.noarch.rpm: Already downloaded [SKIPPED] debugedit-5.0-10.fc39.aarch64.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.aarch64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.189-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.189-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.189-6.fc40.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.189-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.189-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-40-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-40-0.8.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-40-0.8.noarch.rpm: Already downloaded [SKIPPED] 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kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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scriptlet: authselect-libs-1.4.2-3.fc39.aarch64 116/152 Installing : authselect-libs-1.4.2-3.fc39.aarch64 116/152 Installing : gzip-1.12-6.fc39.aarch64 117/152 Installing : cracklib-2.9.11-2.fc40.aarch64 118/152 Installing : libpwquality-1.4.5-6.fc39.aarch64 119/152 Installing : authselect-1.4.2-3.fc39.aarch64 120/152 Installing : libnsl2-2.0.0-6.fc39.aarch64 121/152 Installing : pam-1.5.3-2.fc39.aarch64 122/152 Installing : libarchive-3.7.2-1.fc40.aarch64 123/152 Installing : libevent-2.1.12-9.fc39.aarch64 124/152 Installing : openldap-2.6.6-1.fc39.aarch64 125/152 Installing : rpm-sequoia-1.5.0-1.fc40.aarch64 126/152 Installing : rpm-libs-4.19.0-1.fc40.aarch64 127/152 Installing : ansible-srpm-macros-1-11.fc39.noarch 128/152 Installing : libssh-config-0.10.5-2.fc40.noarch 129/152 Installing : libssh-0.10.5-2.fc40.aarch64 130/152 Installing : libcurl-8.3.0-1.fc40.aarch64 131/152 Installing : elfutils-libs-0.189-6.fc40.aarch64 132/152 Installing : elfutils-debuginfod-client-0.189-6.fc40.aarch64 133/152 Installing : binutils-gold-2.41-5.fc40.aarch64 134/152 Running scriptlet: binutils-gold-2.41-5.fc40.aarch64 134/152 Installing : binutils-2.41-5.fc40.aarch64 135/152 Running scriptlet: binutils-2.41-5.fc40.aarch64 135/152 Installing : elfutils-0.189-6.fc40.aarch64 136/152 Installing : gdb-minimal-13.2-9.fc40.aarch64 137/152 Installing : debugedit-5.0-10.fc39.aarch64 138/152 Installing : rpm-build-libs-4.19.0-1.fc40.aarch64 139/152 Installing : curl-8.3.0-1.fc40.aarch64 140/152 Running scriptlet: rpm-4.19.0-1.fc40.aarch64 141/152 Installing : rpm-4.19.0-1.fc40.aarch64 141/152 Installing : efi-srpm-macros-5-9.fc39.noarch 142/152 Installing : lua-srpm-macros-1-9.fc39.noarch 143/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 144/152 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 145/152 Installing : go-srpm-macros-3.2.0-7.fc40.noarch 146/152 Installing : python-srpm-macros-3.12-4.fc40.noarch 147/152 Installing : redhat-rpm-config-270-1.fc40.noarch 148/152 Installing : rpm-build-4.19.0-1.fc40.aarch64 149/152 Installing : util-linux-2.39.2-1.fc40.aarch64 150/152 Installing : which-2.21-40.fc39.aarch64 151/152 Installing : info-7.0.3-3.fc39.aarch64 152/152 Running scriptlet: filesystem-3.18-6.fc39.aarch64 152/152 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64 152/152 Running scriptlet: rpm-4.19.0-1.fc40.aarch64 152/152 Running scriptlet: info-7.0.3-3.fc39.aarch64 152/152 Verifying : cracklib-2.9.11-2.fc40.aarch64 1/152 Verifying : curl-8.3.0-1.fc40.aarch64 2/152 Verifying : cyrus-sasl-lib-2.1.28-11.fc40.aarch64 3/152 Verifying : file-5.45-1.fc40.aarch64 4/152 Verifying : file-libs-5.45-1.fc40.aarch64 5/152 Verifying : libarchive-3.7.2-1.fc40.aarch64 6/152 Verifying : libblkid-2.39.2-1.fc40.aarch64 7/152 Verifying : libcurl-8.3.0-1.fc40.aarch64 8/152 Verifying : libdb-5.3.28-58.fc40.aarch64 9/152 Verifying : libfdisk-2.39.2-1.fc40.aarch64 10/152 Verifying : libmount-2.39.2-1.fc40.aarch64 11/152 Verifying : libnghttp2-1.56.0-1.fc40.aarch64 12/152 Verifying : libsmartcols-2.39.2-1.fc40.aarch64 13/152 Verifying : libssh-0.10.5-2.fc40.aarch64 14/152 Verifying : libssh-config-0.10.5-2.fc40.noarch 15/152 Verifying : libuuid-2.39.2-1.fc40.aarch64 16/152 Verifying : libxml2-2.11.5-1.fc40.aarch64 17/152 Verifying : libzstd-1.5.5-4.fc40.aarch64 18/152 Verifying : openssl-libs-1:3.1.1-4.fc40.aarch64 19/152 Verifying : redhat-rpm-config-270-1.fc40.noarch 20/152 Verifying : util-linux-2.39.2-1.fc40.aarch64 21/152 Verifying : util-linux-core-2.39.2-1.fc40.aarch64 22/152 Verifying : zlib-ng-compat-2.1.3-5.fc40.aarch64 23/152 Verifying : zstd-1.5.5-4.fc40.aarch64 24/152 Verifying : alternatives-1.25-1.fc39.aarch64 25/152 Verifying : ansible-srpm-macros-1-11.fc39.noarch 26/152 Verifying : audit-libs-3.1.2-4.fc40.aarch64 27/152 Verifying : authselect-1.4.2-3.fc39.aarch64 28/152 Verifying : authselect-libs-1.4.2-3.fc39.aarch64 29/152 Verifying : basesystem-11-18.fc39.noarch 30/152 Verifying : bash-5.2.15-5.fc39.aarch64 31/152 Verifying : binutils-2.41-5.fc40.aarch64 32/152 Verifying : binutils-gold-2.41-5.fc40.aarch64 33/152 Verifying : bzip2-1.0.8-16.fc39.aarch64 34/152 Verifying : bzip2-libs-1.0.8-16.fc39.aarch64 35/152 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 36/152 Verifying : coreutils-9.4-1.fc40.aarch64 37/152 Verifying : coreutils-common-9.4-1.fc40.aarch64 38/152 Verifying : cpio-2.14-4.fc39.aarch64 39/152 Verifying : crypto-policies-20230920-1.git570ea89.fc40.noarc 40/152 Verifying : debugedit-5.0-10.fc39.aarch64 41/152 Verifying : diffutils-3.10-3.fc39.aarch64 42/152 Verifying : dwz-0.15-3.fc39.aarch64 43/152 Verifying : ed-1.19-4.fc39.aarch64 44/152 Verifying : efi-srpm-macros-5-9.fc39.noarch 45/152 Verifying : elfutils-0.189-6.fc40.aarch64 46/152 Verifying : elfutils-debuginfod-client-0.189-6.fc40.aarch64 47/152 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 48/152 Verifying : elfutils-libelf-0.189-6.fc40.aarch64 49/152 Verifying : elfutils-libs-0.189-6.fc40.aarch64 50/152 Verifying : fedora-gpg-keys-40-0.1.noarch 51/152 Verifying : fedora-release-40-0.8.noarch 52/152 Verifying : fedora-release-common-40-0.8.noarch 53/152 Verifying : fedora-release-identity-basic-40-0.8.noarch 54/152 Verifying : fedora-repos-40-0.1.noarch 55/152 Verifying : fedora-repos-rawhide-40-0.1.noarch 56/152 Verifying : filesystem-3.18-6.fc39.aarch64 57/152 Verifying : findutils-1:4.9.0-6.fc40.aarch64 58/152 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 59/152 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 60/152 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 61/152 Verifying : gawk-5.2.2-2.fc39.aarch64 62/152 Verifying : gdb-minimal-13.2-9.fc40.aarch64 63/152 Verifying : gdbm-libs-1:1.23-4.fc39.aarch64 64/152 Verifying : ghc-srpm-macros-1.6.1-3.fc40.noarch 65/152 Verifying : glibc-2.38.9000-9.fc40.aarch64 66/152 Verifying : glibc-common-2.38.9000-9.fc40.aarch64 67/152 Verifying : glibc-gconv-extra-2.38.9000-9.fc40.aarch64 68/152 Verifying : glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 69/152 Verifying : gmp-1:6.2.1-5.fc39.aarch64 70/152 Verifying : gnat-srpm-macros-6-3.fc39.noarch 71/152 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 72/152 Verifying : grep-3.11-5.fc40.aarch64 73/152 Verifying : gzip-1.12-6.fc39.aarch64 74/152 Verifying : info-7.0.3-3.fc39.aarch64 75/152 Verifying : jansson-2.13.1-7.fc39.aarch64 76/152 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 77/152 Verifying : keyutils-libs-1.6.1-7.fc39.aarch64 78/152 Verifying : krb5-libs-1.21.2-1.fc40.aarch64 79/152 Verifying : libacl-2.3.1-9.fc40.aarch64 80/152 Verifying : libattr-2.5.1-9.fc40.aarch64 81/152 Verifying : libbrotli-1.1.0-1.fc40.aarch64 82/152 Verifying : libcap-2.48-7.fc39.aarch64 83/152 Verifying : libcap-ng-0.8.3-8.fc40.aarch64 84/152 Verifying : libcom_err-1.47.0-2.fc39.aarch64 85/152 Verifying : libeconf-0.5.2-1.fc40.aarch64 86/152 Verifying : libevent-2.1.12-9.fc39.aarch64 87/152 Verifying : libffi-3.4.4-4.fc39.aarch64 88/152 Verifying : libgcc-13.2.1-3.fc40.aarch64 89/152 Verifying : libgomp-13.2.1-3.fc40.aarch64 90/152 Verifying : libidn2-2.3.4-3.fc39.aarch64 91/152 Verifying : libnsl2-2.0.0-6.fc39.aarch64 92/152 Verifying : libpkgconf-1.9.5-2.fc39.aarch64 93/152 Verifying : libpsl-0.21.2-4.fc39.aarch64 94/152 Verifying : libpwquality-1.4.5-6.fc39.aarch64 95/152 Verifying : libselinux-3.5-5.fc39.aarch64 96/152 Verifying : libsemanage-3.5-4.fc39.aarch64 97/152 Verifying : libsepol-3.5-2.fc39.aarch64 98/152 Verifying : libsigsegv-2.14-5.fc39.aarch64 99/152 Verifying : libstdc++-13.2.1-3.fc40.aarch64 100/152 Verifying : libtasn1-4.19.0-3.fc39.aarch64 101/152 Verifying : libtirpc-1.3.3-1.rc2.fc39.aarch64 102/152 Verifying : libunistring-1.1-5.fc40.aarch64 103/152 Verifying : libutempter-1.2.1-10.fc39.aarch64 104/152 Verifying : libverto-0.3.2-6.fc39.aarch64 105/152 Verifying : libxcrypt-4.4.36-2.fc39.aarch64 106/152 Verifying : lua-libs-5.4.6-3.fc39.aarch64 107/152 Verifying : lua-srpm-macros-1-9.fc39.noarch 108/152 Verifying : lz4-libs-1.9.4-4.fc39.aarch64 109/152 Verifying : mpfr-4.2.0-3.fc39.aarch64 110/152 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 111/152 Verifying : ncurses-libs-6.4-7.20230520.fc40.aarch64 112/152 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 113/152 Verifying : openblas-srpm-macros-2-14.fc39.noarch 114/152 Verifying : openldap-2.6.6-1.fc39.aarch64 115/152 Verifying : p11-kit-0.25.0-2.fc39.aarch64 116/152 Verifying : p11-kit-trust-0.25.0-2.fc39.aarch64 117/152 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 118/152 Verifying : pam-1.5.3-2.fc39.aarch64 119/152 Verifying : pam-libs-1.5.3-2.fc39.aarch64 120/152 Verifying : patch-2.7.6-22.fc39.aarch64 121/152 Verifying : pcre2-10.42-1.fc39.2.aarch64 122/152 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 123/152 Verifying : perl-srpm-macros-1-51.fc39.noarch 124/152 Verifying : pkgconf-1.9.5-2.fc39.aarch64 125/152 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 126/152 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.aarch64 127/152 Verifying : popt-1.19-3.fc39.aarch64 128/152 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 129/152 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 130/152 Verifying : python-srpm-macros-3.12-4.fc40.noarch 131/152 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 132/152 Verifying : qt6-srpm-macros-6.5.2-3.fc40.noarch 133/152 Verifying : readline-8.2-4.fc39.aarch64 134/152 Verifying : rpm-4.19.0-1.fc40.aarch64 135/152 Verifying : rpm-build-4.19.0-1.fc40.aarch64 136/152 Verifying : rpm-build-libs-4.19.0-1.fc40.aarch64 137/152 Verifying : rpm-libs-4.19.0-1.fc40.aarch64 138/152 Verifying : rpm-sequoia-1.5.0-1.fc40.aarch64 139/152 Verifying : rust-srpm-macros-24-5.fc40.noarch 140/152 Verifying : sed-4.8-14.fc39.aarch64 141/152 Verifying : setup-2.14.4-1.fc39.noarch 142/152 Verifying : shadow-utils-2:4.14.0-1.fc40.aarch64 143/152 Verifying : sqlite-libs-3.43.1-1.fc40.aarch64 144/152 Verifying : systemd-libs-254.2-12.fc40.aarch64 145/152 Verifying : tar-2:1.35-2.fc40.aarch64 146/152 Verifying : unzip-6.0-62.fc39.aarch64 147/152 Verifying : which-2.21-40.fc39.aarch64 148/152 Verifying : xxhash-libs-0.8.2-1.fc39.aarch64 149/152 Verifying : xz-5.4.4-1.fc39.aarch64 150/152 Verifying : xz-libs-5.4.4-1.fc39.aarch64 151/152 Verifying : zip-3.0-39.fc40.aarch64 152/152 Installed: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.2-3.fc39.aarch64 authselect-libs-1.4.2-3.fc39.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-5.fc40.aarch64 binutils-gold-2.41-5.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc40.aarch64 crypto-policies-20230920-1.git570ea89.fc40.noarch curl-8.3.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc40.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.8.noarch fedora-release-common-40-0.8.noarch fedora-release-identity-basic-40-0.8.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-1:4.9.0-6.fc40.aarch64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-9.fc40.aarch64 gdbm-libs-1:1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-9.fc40.aarch64 glibc-common-2.38.9000-9.fc40.aarch64 glibc-gconv-extra-2.38.9000-9.fc40.aarch64 glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 gmp-1:6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.0.3-3.fc39.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-1.fc40.aarch64 libacl-2.3.1-9.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.3.0-1.fc40.aarch64 libdb-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-3.fc40.aarch64 libgomp-13.2.1-3.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.56.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc40.aarch64 libssh-config-0.10.5-2.fc40.noarch libstdc++-13.2.1-3.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.3-1.rc2.fc39.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc40.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.0-3.fc39.aarch64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.aarch64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-1:3.1.1-4.fc40.aarch64 p11-kit-0.25.0-2.fc39.aarch64 p11-kit-trust-0.25.0-2.fc39.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.aarch64 pam-libs-1.5.3-2.fc39.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-3.fc40.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-270-1.fc40.noarch rpm-4.19.0-1.fc40.aarch64 rpm-build-4.19.0-1.fc40.aarch64 rpm-build-libs-4.19.0-1.fc40.aarch64 rpm-libs-4.19.0-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.aarch64 sqlite-libs-3.43.1-1.fc40.aarch64 systemd-libs-254.2-12.fc40.aarch64 tar-2:1.35-2.fc40.aarch64 unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.3-5.fc40.aarch64 zstd-1.5.5-4.fc40.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.2-3.fc39.aarch64 authselect-libs-1.4.2-3.fc39.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-5.fc40.aarch64 binutils-gold-2.41-5.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc40.aarch64 crypto-policies-20230920-1.git570ea89.fc40.noarch curl-8.3.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc40.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.8.noarch fedora-release-common-40-0.8.noarch fedora-release-identity-basic-40-0.8.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-4.9.0-6.fc40.aarch64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-9.fc40.aarch64 gdbm-libs-1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-9.fc40.aarch64 glibc-common-2.38.9000-9.fc40.aarch64 glibc-gconv-extra-2.38.9000-9.fc40.aarch64 glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 gmp-6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.0.3-3.fc39.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-1.fc40.aarch64 libacl-2.3.1-9.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.3.0-1.fc40.aarch64 libdb-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-3.fc40.aarch64 libgomp-13.2.1-3.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.56.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc40.aarch64 libssh-config-0.10.5-2.fc40.noarch libstdc++-13.2.1-3.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.3-1.rc2.fc39.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc40.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.0-3.fc39.aarch64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.aarch64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-3.1.1-4.fc40.aarch64 p11-kit-0.25.0-2.fc39.aarch64 p11-kit-trust-0.25.0-2.fc39.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.aarch64 pam-libs-1.5.3-2.fc39.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-3.fc40.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-270-1.fc40.noarch rpm-4.19.0-1.fc40.aarch64 rpm-build-4.19.0-1.fc40.aarch64 rpm-build-libs-4.19.0-1.fc40.aarch64 rpm-libs-4.19.0-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.aarch64 sqlite-libs-3.43.1-1.fc40.aarch64 systemd-libs-254.2-12.fc40.aarch64 tar-1.35-2.fc40.aarch64 unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.3-5.fc40.aarch64 zstd-1.5.5-4.fc40.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1692316800 Wrote: /builddir/build/SRPMS/smoldyn-2.72-2.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn/smoldyn.spec) Config(child) 0 minutes 49 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.72-2.fc40.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695459271.609342/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695459271.609342/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 python3-dnf-4.17.0-6.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.17.0-6.fc40.noarch Start: build phase for smoldyn-2.72-2.fc40.src.rpm Start: build setup for smoldyn-2.72-2.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1692316800 Wrote: /builddir/build/SRPMS/smoldyn-2.72-2.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 61 kB/s | 1.5 kB 00:00 fedora 210 kB/s | 11 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: boost-devel aarch64 1.81.0-6.fc40 copr_base 12 M cmake aarch64 3.27.4-8.fc40 fedora 7.4 M freeglut-devel aarch64 3.4.0-4.fc39 fedora 945 k gcc aarch64 13.2.1-3.fc40 fedora 31 M gcc-c++ aarch64 13.2.1-3.fc40 fedora 12 M libXi-devel aarch64 1.8.1-3.fc40 fedora 116 k libXmu-devel aarch64 1.1.4-4.fc40 fedora 27 k libglvnd-devel aarch64 1:1.7.0-1.fc40 fedora 162 k libtiff-devel aarch64 4.4.0-8.fc40 copr_base 513 k make aarch64 1:4.4.1-2.fc39 fedora 585 k perl-macros noarch 4:5.38.0-500.fc40 copr_base 13 k pybind11-devel aarch64 2.11.1-1.fc39 fedora 176 k python3-devel aarch64 3.12.0~rc3-1.fc40 fedora 311 k python3-flaky noarch 3.7.0-12.fc39 fedora 45 k python3-matplotlib aarch64 3.8.0-1.fc40 fedora 4.4 M python3-setuptools noarch 67.7.2-7.fc40 fedora 1.5 M python3-wheel noarch 1:0.40.0-4.fc39 fedora 161 k xorg-x11-server-Xvfb aarch64 1.20.14-24.fc39 fedora 879 k zlib-ng-compat-devel aarch64 2.1.3-5.fc40 copr_base 34 k Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k annobin-docs noarch 12.26-1.fc40 fedora 94 k annobin-plugin-gcc aarch64 12.26-1.fc40 fedora 958 k boost aarch64 1.81.0-6.fc40 copr_base 15 k boost-atomic aarch64 1.81.0-6.fc40 copr_base 20 k boost-chrono aarch64 1.81.0-6.fc40 copr_base 26 k boost-container aarch64 1.81.0-6.fc40 copr_base 40 k boost-context aarch64 1.81.0-6.fc40 copr_base 18 k boost-contract aarch64 1.81.0-6.fc40 copr_base 44 k boost-coroutine aarch64 1.81.0-6.fc40 copr_base 21 k boost-date-time aarch64 1.81.0-6.fc40 copr_base 17 k boost-fiber aarch64 1.81.0-6.fc40 copr_base 43 k boost-filesystem aarch64 1.81.0-6.fc40 copr_base 64 k boost-graph aarch64 1.81.0-6.fc40 copr_base 144 k boost-iostreams aarch64 1.81.0-6.fc40 copr_base 41 k boost-json aarch64 1.81.0-6.fc40 copr_base 108 k boost-locale aarch64 1.81.0-6.fc40 copr_base 207 k boost-log aarch64 1.81.0-6.fc40 copr_base 460 k boost-math aarch64 1.81.0-6.fc40 copr_base 260 k boost-nowide aarch64 1.81.0-6.fc40 copr_base 22 k boost-numpy3 aarch64 1.81.0-6.fc40 copr_base 30 k boost-program-options aarch64 1.81.0-6.fc40 copr_base 106 k boost-python3 aarch64 1.81.0-6.fc40 copr_base 90 k boost-random aarch64 1.81.0-6.fc40 copr_base 25 k boost-regex aarch64 1.81.0-6.fc40 copr_base 109 k boost-serialization aarch64 1.81.0-6.fc40 copr_base 129 k boost-stacktrace aarch64 1.81.0-6.fc40 copr_base 31 k boost-system aarch64 1.81.0-6.fc40 copr_base 17 k boost-test aarch64 1.81.0-6.fc40 copr_base 228 k boost-thread aarch64 1.81.0-6.fc40 copr_base 57 k boost-timer aarch64 1.81.0-6.fc40 copr_base 25 k boost-type_erasure aarch64 1.81.0-6.fc40 copr_base 33 k boost-wave aarch64 1.81.0-6.fc40 copr_base 222 k cairo aarch64 1.17.8-5.fc40 copr_base 689 k cmake-data noarch 3.27.4-8.fc40 fedora 2.2 M cmake-filesystem aarch64 3.27.4-8.fc40 fedora 19 k cmake-rpm-macros noarch 3.27.4-8.fc40 fedora 18 k cpp aarch64 13.2.1-3.fc40 fedora 9.7 M default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k dejavu-sans-fonts noarch 2.37-20.fc38 fedora 1.3 M emacs-filesystem noarch 1:29.1-1.fc40 copr_base 8.9 k expat aarch64 2.5.0-3.fc39 fedora 108 k flexiblas aarch64 3.3.1-5.fc39 fedora 33 k flexiblas-netlib aarch64 3.3.1-5.fc39 fedora 2.6 M flexiblas-openblas-openmp aarch64 3.3.1-5.fc39 fedora 16 k fontconfig aarch64 2.14.2-5.fc40 fedora 301 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freeglut aarch64 3.4.0-4.fc39 fedora 152 k freetype aarch64 2.13.1-2.fc40 copr_base 406 k fribidi aarch64 1.0.13-2.fc39 fedora 91 k gc aarch64 8.2.2-4.fc39 fedora 110 k gcc-plugin-annobin aarch64 13.2.1-3.fc40 fedora 48 k gl-manpages noarch 1.1-29.20190306.fc40 fedora 1.2 M glib2 aarch64 2.78.0-2.fc40 fedora 2.8 M glibc-devel aarch64 2.38.9000-9.fc40 fedora 582 k gnutls aarch64 3.8.1-1.fc40 fedora 1.0 M google-noto-fonts-common noarch 20230801-3.fc40 fedora 17 k google-noto-sans-vf-fonts noarch 20230801-3.fc40 fedora 583 k graphite2 aarch64 1.3.14-12.fc39 fedora 93 k groff-base aarch64 1.23.0-2.fc39 fedora 1.1 M guile22 aarch64 2.2.7-9.fc39 fedora 6.5 M harfbuzz aarch64 8.2.1-1.fc40 fedora 934 k jbigkit-libs aarch64 2.1-26.fc39 fedora 53 k jsoncpp aarch64 1.9.5-5.fc39 fedora 91 k kernel-headers aarch64 6.6.0-0.rc2.git0.1.fc40 fedora 1.5 M lcms2 aarch64 2.15-2.fc40 copr_base 177 k libICE aarch64 1.0.10-12.fc40 fedora 69 k libICE-devel aarch64 1.0.10-12.fc40 fedora 46 k libSM aarch64 1.2.3-14.fc40 fedora 41 k libSM-devel aarch64 1.2.3-14.fc40 fedora 12 k libX11 aarch64 1.8.6-3.fc40 fedora 643 k libX11-common noarch 1.8.6-3.fc40 fedora 175 k libX11-devel aarch64 1.8.6-3.fc40 fedora 1.0 M libX11-xcb aarch64 1.8.6-3.fc40 fedora 12 k libXau aarch64 1.0.11-4.fc40 fedora 32 k libXau-devel aarch64 1.0.11-4.fc40 fedora 14 k libXdmcp aarch64 1.1.3-12.fc40 fedora 35 k libXext aarch64 1.3.5-3.fc39 fedora 39 k libXext-devel aarch64 1.3.5-3.fc39 fedora 85 k libXfixes aarch64 6.0.0-7.fc40 fedora 19 k libXfixes-devel aarch64 6.0.0-7.fc40 fedora 12 k libXfont2 aarch64 2.0.3-16.fc40 fedora 142 k libXft aarch64 2.3.8-4.fc40 fedora 71 k libXi aarch64 1.8.1-3.fc40 fedora 39 k libXmu aarch64 1.1.4-4.fc40 fedora 76 k libXrender aarch64 0.9.11-4.fc40 fedora 27 k libXt aarch64 1.2.1-6.fc40 fedora 176 k libXt-devel aarch64 1.2.1-6.fc40 fedora 460 k libXxf86vm aarch64 1.1.5-4.fc40 fedora 18 k libasan aarch64 13.2.1-3.fc40 fedora 456 k libatomic aarch64 13.2.1-3.fc40 fedora 38 k libb2 aarch64 0.98.1-9.fc39 fedora 24 k libdrm aarch64 2.4.114-3.fc39 fedora 135 k libdrm-devel aarch64 2.4.114-3.fc39 fedora 185 k libfontenc aarch64 1.1.6-3.fc40 copr_base 33 k libgfortran aarch64 13.2.1-3.fc40 fedora 439 k libglvnd aarch64 1:1.7.0-1.fc40 fedora 126 k libglvnd-core-devel aarch64 1:1.7.0-1.fc40 fedora 17 k libglvnd-egl aarch64 1:1.7.0-1.fc40 fedora 37 k libglvnd-gles aarch64 1:1.7.0-1.fc40 fedora 32 k libglvnd-glx aarch64 1:1.7.0-1.fc40 fedora 138 k libglvnd-opengl aarch64 1:1.7.0-1.fc40 fedora 44 k libicu aarch64 73.2-2.fc39 fedora 10 M libicu-devel aarch64 73.2-2.fc39 fedora 925 k libimagequant aarch64 4.0.1-5.fc39 fedora 291 k libjpeg-turbo aarch64 2.1.4-3.fc39 fedora 196 k liblerc aarch64 4.0.0-4.fc39 fedora 179 k libmpc aarch64 1.3.1-3.fc39 fedora 72 k libpng aarch64 2:1.6.40-1.fc40 copr_base 116 k libqhull_r aarch64 1:8.0.2-2.fc40 fedora 193 k libraqm aarch64 0.8.0-5.fc39 fedora 20 k libstdc++-devel aarch64 13.2.1-3.fc40 fedora 2.6 M libtiff aarch64 4.4.0-8.fc40 copr_base 196 k libtool-ltdl aarch64 2.4.7-8.fc40 fedora 36 k libubsan aarch64 13.2.1-3.fc40 fedora 205 k libunwind aarch64 1.7.2-1.fc40 fedora 72 k libuv aarch64 1:1.46.0-2.fc39 fedora 156 k libwayland-client aarch64 1.22.0-2.fc39 fedora 33 k libwayland-server aarch64 1.22.0-2.fc39 fedora 42 k libwebp aarch64 1.3.2-1.fc40 fedora 243 k libxcb aarch64 1.13.1-12.fc39 fedora 238 k libxcb-devel aarch64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel aarch64 4.4.36-2.fc39 fedora 30 k libxkbfile aarch64 1.1.1-4.fc40 fedora 89 k libxshmfence aarch64 1.3-13.fc39 fedora 12 k libxslt aarch64 1.1.38-3.fc39 fedora 185 k mesa-libEGL aarch64 23.2.0~rc3-1.fc40 fedora 133 k mesa-libGL aarch64 23.2.0~rc3-1.fc40 fedora 186 k mesa-libGL-devel aarch64 23.2.0~rc3-1.fc40 fedora 36 k mesa-libGLU aarch64 9.0.3-1.fc39 fedora 148 k mesa-libGLU-devel aarch64 9.0.3-1.fc39 fedora 12 k mesa-libgbm aarch64 23.2.0~rc3-1.fc40 fedora 46 k mesa-libglapi aarch64 23.2.0~rc3-1.fc40 fedora 67 k mpdecimal aarch64 2.5.1-7.fc39 fedora 90 k ncurses aarch64 6.4-7.20230520.fc40 fedora 415 k nettle aarch64 3.9.1-2.fc39 fedora 434 k openblas aarch64 0.3.21-6.fc39 fedora 35 k openblas-openmp aarch64 0.3.21-6.fc39 fedora 3.7 M openjpeg2 aarch64 2.5.0-4.fc39 fedora 176 k perl-AutoLoader noarch 5.74-500.fc40 copr_base 22 k perl-B aarch64 1.88-500.fc40 copr_base 178 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Struct noarch 0.68-500.fc40 copr_base 23 k perl-Data-Dumper aarch64 2.188-501.fc39 fedora 55 k perl-Digest noarch 1.20-500.fc39 fedora 25 k perl-Digest-MD5 aarch64 2.58-500.fc39 fedora 36 k perl-DynaLoader aarch64 1.54-500.fc40 copr_base 27 k perl-Encode aarch64 4:3.19-500.fc39 fedora 1.7 M perl-Errno aarch64 1.37-500.fc40 copr_base 15 k perl-Exporter noarch 5.77-500.fc39 fedora 31 k perl-Fcntl aarch64 1.15-500.fc40 copr_base 21 k perl-File-Basename noarch 2.86-500.fc40 copr_base 18 k perl-File-Path noarch 2.18-500.fc39 fedora 35 k perl-File-Temp noarch 1:0.231.100-500.fc39 fedora 58 k perl-File-stat noarch 1.13-500.fc40 copr_base 18 k perl-FileHandle noarch 2.05-500.fc40 copr_base 16 k perl-Getopt-Long noarch 1:2.54-500.fc39 fedora 60 k perl-Getopt-Std noarch 1.13-500.fc40 copr_base 16 k perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k perl-IO aarch64 1.52-500.fc40 copr_base 78 k perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k perl-IO-Socket-SSL noarch 2.083-3.fc39 fedora 225 k perl-IPC-Open3 noarch 1.22-500.fc40 copr_base 22 k perl-MIME-Base64 aarch64 3.16-500.fc39 fedora 30 k perl-Mozilla-CA noarch 20230821-1.fc40 fedora 13 k perl-Net-SSLeay aarch64 1.92-10.fc39 fedora 356 k perl-POSIX aarch64 2.13-500.fc40 copr_base 98 k perl-PathTools aarch64 3.89-500.fc39 fedora 88 k perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k perl-Scalar-List-Utils aarch64 5:1.63-500.fc39 fedora 71 k perl-SelectSaver noarch 1.02-500.fc40 copr_base 12 k perl-Socket aarch64 4:2.037-3.fc39 fedora 56 k perl-Storable aarch64 1:3.32-500.fc39 fedora 97 k perl-Symbol noarch 1.09-500.fc40 copr_base 15 k perl-Term-ANSIColor noarch 5.01-501.fc39 fedora 47 k perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k perl-URI noarch 5.21-1.fc40 fedora 125 k perl-base noarch 2.27-500.fc40 copr_base 17 k perl-constant noarch 1.33-501.fc39 fedora 22 k perl-if noarch 0.61.000-500.fc40 copr_base 15 k perl-interpreter aarch64 4:5.38.0-500.fc40 copr_base 72 k perl-libnet noarch 3.15-501.fc39 fedora 129 k perl-libs aarch64 4:5.38.0-500.fc40 copr_base 2.2 M perl-locale noarch 1.10-500.fc40 copr_base 14 k perl-mro aarch64 1.28-500.fc40 copr_base 29 k perl-overload noarch 1.37-500.fc40 copr_base 46 k perl-overloading noarch 0.02-500.fc40 copr_base 13 k perl-parent noarch 1:0.241-500.fc39 fedora 14 k perl-podlators noarch 1:5.01-500.fc39 fedora 125 k perl-vars noarch 1.05-500.fc40 copr_base 14 k pixman aarch64 0.42.2-2.fc39 fedora 216 k pyproject-rpm-macros noarch 1.9.0-2.fc39 fedora 41 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python-rpm-macros noarch 3.12-4.fc40 fedora 19 k python3 aarch64 3.12.0~rc3-1.fc40 fedora 26 k python3-appdirs noarch 1.4.4-11.fc39 fedora 23 k python3-brotli aarch64 1.1.0-1.fc40 fedora 346 k python3-cairo aarch64 1.24.0-2.fc39 fedora 127 k python3-charset-normalizer noarch 3.2.0-2.fc39 fedora 105 k python3-contourpy aarch64 1.1.0-2.fc39 fedora 221 k python3-cycler noarch 0.11.0-9.fc39 fedora 21 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-fonttools aarch64 4.42.1-1.fc40 fedora 2.8 M python3-fs noarch 2.4.16-5.fc39 fedora 302 k python3-idna noarch 3.4-5.fc40 fedora 109 k python3-kiwisolver aarch64 1.4.5-1.fc40 fedora 65 k python3-libs aarch64 3.12.0~rc3-1.fc40 fedora 9.1 M python3-lxml aarch64 4.9.3-2.fc39 fedora 1.4 M python3-matplotlib-data noarch 3.8.0-1.fc40 fedora 524 k python3-matplotlib-data-fonts noarch 3.8.0-1.fc40 fedora 2.3 M python3-matplotlib-tk aarch64 3.8.0-1.fc40 fedora 48 k python3-numpy aarch64 1:1.24.4-2.fc39 fedora 7.2 M python3-numpy-f2py aarch64 1:1.24.4-2.fc39 fedora 478 k python3-olefile noarch 0.46-21.fc39 fedora 66 k python3-packaging noarch 23.1-5.fc40 fedora 115 k python3-pillow aarch64 10.0.1-1.fc40 fedora 908 k python3-pillow-tk aarch64 10.0.1-1.fc40 fedora 30 k python3-pooch noarch 1.5.2-12.fc39 fedora 126 k python3-pyparsing noarch 3.0.9-11.fc39 fedora 254 k python3-pysocks noarch 1.7.1-20.fc39 fedora 39 k python3-requests noarch 2.28.2-6.fc40 fedora 151 k python3-rpm-generators noarch 14-7.fc39 fedora 30 k python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k python3-scipy aarch64 1.11.1-1.fc39 fedora 15 M python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-tkinter aarch64 3.12.0~rc3-1.fc40 fedora 407 k python3-urllib3 noarch 1.26.16-3.fc40 fedora 273 k python3-urllib3+socks noarch 1.26.16-3.fc40 fedora 9.9 k rhash aarch64 1.4.3-3.fc39 fedora 192 k tcl aarch64 1:8.6.13-1.fc40 copr_base 1.1 M tk aarch64 1:8.6.13-1.fc40 fedora 1.6 M tzdata noarch 2023c-3.fc40 fedora 718 k vim-filesystem noarch 2:9.0.1882-1.fc40 fedora 18 k xkbcomp aarch64 1.4.6-6.fc39 fedora 97 k xkeyboard-config noarch 2.39-2.fc39 fedora 962 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-proto-devel noarch 2023.2-3.fc40 fedora 298 k xorg-x11-server-common aarch64 1.20.14-24.fc39 fedora 35 k xorg-x11-xauth aarch64 1:1.1.2-4.fc39 fedora 35 k Transaction Summary ================================================================================ Install 264 Packages Total size: 195 M Total download size: 107 M Installed size: 867 M Downloading Packages: [SKIPPED] emacs-filesystem-29.1-1.fc40.noarch.rpm: Already downloaded [SKIPPED] zlib-ng-compat-devel-2.1.3-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] annobin-docs-12.26-1.fc40.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.26-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] cmake-3.27.4-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] cmake-data-3.27.4-8.fc40.noarch.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.27.4-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] cmake-rpm-macros-3.27.4-8.fc40.noarch.rpm: Already downloaded [SKIPPED] cpp-13.2.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] expat-2.5.0-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] gc-8.2.2-4.fc39.aarch64.rpm: Already downloaded [SKIPPED] gcc-13.2.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] gcc-c++-13.2.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.2.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] glibc-devel-2.38.9000-9.fc40.aarch64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-9.fc39.aarch64.rpm: Already downloaded [SKIPPED] jsoncpp-1.9.5-5.fc39.aarch64.rpm: Already downloaded [SKIPPED] kernel-headers-6.6.0-0.rc2.git0.1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libasan-13.2.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libatomic-13.2.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-9.fc39.aarch64.rpm: Already downloaded [SKIPPED] libmpc-1.3.1-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] libstdc++-devel-13.2.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] libubsan-13.2.1-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] libuv-1.46.0-2.fc39.aarch64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.36-2.fc39.aarch64.rpm: Already downloaded [SKIPPED] make-4.4.1-2.fc39.aarch64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-7.fc39.aarch64.rpm: Already downloaded [SKIPPED] python-pip-wheel-23.2.1-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-3.12.0~rc3-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] python3-libs-3.12.0~rc3-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] rhash-1.4.3-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] tzdata-2023c-3.fc40.noarch.rpm: Already downloaded [SKIPPED] vim-filesystem-9.0.1882-1.fc40.noarch.rpm: Already downloaded (36/264): boost-1.81.0-6.fc40.aarch64.rpm 873 kB/s | 15 kB 00:00 (37/264): boost-atomic-1.81.0-6.fc40.aarch64.rp 1.1 MB/s | 20 kB 00:00 (38/264): boost-chrono-1.81.0-6.fc40.aarch64.rp 1.4 MB/s | 26 kB 00:00 (39/264): boost-container-1.81.0-6.fc40.aarch64 26 MB/s | 40 kB 00:00 (40/264): boost-context-1.81.0-6.fc40.aarch64.r 11 MB/s | 18 kB 00:00 (41/264): boost-contract-1.81.0-6.fc40.aarch64. 25 MB/s | 44 kB 00:00 (42/264): boost-coroutine-1.81.0-6.fc40.aarch64 12 MB/s | 21 kB 00:00 (43/264): boost-date-time-1.81.0-6.fc40.aarch64 11 MB/s | 17 kB 00:00 (44/264): boost-fiber-1.81.0-6.fc40.aarch64.rpm 7.5 MB/s | 43 kB 00:00 (45/264): boost-filesystem-1.81.0-6.fc40.aarch6 12 MB/s | 64 kB 00:00 (46/264): boost-graph-1.81.0-6.fc40.aarch64.rpm 30 MB/s | 144 kB 00:00 (47/264): boost-iostreams-1.81.0-6.fc40.aarch64 7.0 MB/s | 41 kB 00:00 (48/264): boost-json-1.81.0-6.fc40.aarch64.rpm 30 MB/s | 108 kB 00:00 (49/264): boost-locale-1.81.0-6.fc40.aarch64.rp 57 MB/s | 207 kB 00:00 (50/264): boost-log-1.81.0-6.fc40.aarch64.rpm 67 MB/s | 460 kB 00:00 (51/264): boost-math-1.81.0-6.fc40.aarch64.rpm 43 MB/s | 260 kB 00:00 (52/264): boost-devel-1.81.0-6.fc40.aarch64.rpm 269 MB/s | 12 MB 00:00 (53/264): boost-nowide-1.81.0-6.fc40.aarch64.rp 1.4 MB/s | 22 kB 00:00 (54/264): boost-numpy3-1.81.0-6.fc40.aarch64.rp 2.2 MB/s | 30 kB 00:00 (55/264): boost-program-options-1.81.0-6.fc40.a 49 MB/s | 106 kB 00:00 (56/264): boost-python3-1.81.0-6.fc40.aarch64.r 39 MB/s | 90 kB 00:00 (57/264): boost-random-1.81.0-6.fc40.aarch64.rp 9.3 MB/s | 25 kB 00:00 (58/264): boost-regex-1.81.0-6.fc40.aarch64.rpm 64 MB/s | 109 kB 00:00 (59/264): boost-serialization-1.81.0-6.fc40.aar 80 MB/s | 129 kB 00:00 (60/264): boost-stacktrace-1.81.0-6.fc40.aarch6 19 MB/s | 31 kB 00:00 (61/264): boost-system-1.81.0-6.fc40.aarch64.rp 9.4 MB/s | 17 kB 00:00 (62/264): boost-test-1.81.0-6.fc40.aarch64.rpm 108 MB/s | 228 kB 00:00 (63/264): boost-thread-1.81.0-6.fc40.aarch64.rp 28 MB/s | 57 kB 00:00 (64/264): boost-timer-1.81.0-6.fc40.aarch64.rpm 12 MB/s | 25 kB 00:00 (65/264): boost-type_erasure-1.81.0-6.fc40.aarc 19 MB/s | 33 kB 00:00 (66/264): boost-wave-1.81.0-6.fc40.aarch64.rpm 105 MB/s | 222 kB 00:00 (67/264): cairo-1.17.8-5.fc40.aarch64.rpm 181 MB/s | 689 kB 00:00 (68/264): freetype-2.13.1-2.fc40.aarch64.rpm 103 MB/s | 406 kB 00:00 (69/264): lcms2-2.15-2.fc40.aarch64.rpm 42 MB/s | 177 kB 00:00 (70/264): libfontenc-1.1.6-3.fc40.aarch64.rpm 15 MB/s | 33 kB 00:00 (71/264): libpng-1.6.40-1.fc40.aarch64.rpm 62 MB/s | 116 kB 00:00 (72/264): libtiff-4.4.0-8.fc40.aarch64.rpm 89 MB/s | 196 kB 00:00 (73/264): libtiff-devel-4.4.0-8.fc40.aarch64.rp 179 MB/s | 513 kB 00:00 (74/264): perl-AutoLoader-5.74-500.fc40.noarch. 9.4 MB/s | 22 kB 00:00 (75/264): perl-B-1.88-500.fc40.aarch64.rpm 95 MB/s | 178 kB 00:00 (76/264): perl-Class-Struct-0.68-500.fc40.noarc 15 MB/s | 23 kB 00:00 (77/264): perl-DynaLoader-1.54-500.fc40.aarch64 17 MB/s | 27 kB 00:00 (78/264): perl-Errno-1.37-500.fc40.aarch64.rpm 10 MB/s | 15 kB 00:00 (79/264): perl-Fcntl-1.15-500.fc40.aarch64.rpm 14 MB/s | 21 kB 00:00 (80/264): perl-File-Basename-2.86-500.fc40.noar 12 MB/s | 18 kB 00:00 (81/264): perl-File-stat-1.13-500.fc40.noarch.r 12 MB/s | 18 kB 00:00 (82/264): perl-FileHandle-2.05-500.fc40.noarch. 7.9 MB/s | 16 kB 00:00 (83/264): perl-IO-1.52-500.fc40.aarch64.rpm 45 MB/s | 78 kB 00:00 (84/264): perl-IPC-Open3-1.22-500.fc40.noarch.r 14 MB/s | 22 kB 00:00 (85/264): perl-Getopt-Std-1.13-500.fc40.noarch. 4.8 MB/s | 16 kB 00:00 (86/264): perl-POSIX-2.13-500.fc40.aarch64.rpm 57 MB/s | 98 kB 00:00 (87/264): perl-SelectSaver-1.02-500.fc40.noarch 8.3 MB/s | 12 kB 00:00 (88/264): perl-Symbol-1.09-500.fc40.noarch.rpm 9.5 MB/s | 15 kB 00:00 (89/264): perl-base-2.27-500.fc40.noarch.rpm 8.0 MB/s | 17 kB 00:00 (90/264): perl-if-0.61.000-500.fc40.noarch.rpm 7.3 MB/s | 15 kB 00:00 (91/264): perl-interpreter-5.38.0-500.fc40.aarc 34 MB/s | 72 kB 00:00 (92/264): perl-locale-1.10-500.fc40.noarch.rpm 9.0 MB/s | 14 kB 00:00 (93/264): perl-mro-1.28-500.fc40.aarch64.rpm 9.1 MB/s | 29 kB 00:00 (94/264): perl-libs-5.38.0-500.fc40.aarch64.rpm 240 MB/s | 2.2 MB 00:00 (95/264): perl-overload-1.37-500.fc40.noarch.rp 16 MB/s | 46 kB 00:00 (96/264): perl-overloading-0.02-500.fc40.noarch 7.7 MB/s | 13 kB 00:00 (97/264): perl-macros-5.38.0-500.fc40.noarch.rp 1.1 MB/s | 13 kB 00:00 (98/264): perl-vars-1.05-500.fc40.noarch.rpm 7.0 MB/s | 14 kB 00:00 (99/264): tcl-8.6.13-1.fc40.aarch64.rpm 242 MB/s | 1.1 MB 00:00 (100/264): dejavu-sans-fonts-2.37-20.fc38.noarc 76 MB/s | 1.3 MB 00:00 (101/264): default-fonts-core-sans-4.0-9.fc40.n 1.4 MB/s | 32 kB 00:00 (102/264): flexiblas-3.3.1-5.fc39.aarch64.rpm 7.2 MB/s | 33 kB 00:00 (103/264): abattis-cantarell-vf-fonts-0.301-10. 3.8 MB/s | 121 kB 00:00 (104/264): flexiblas-openblas-openmp-3.3.1-5.fc 1.9 MB/s | 16 kB 00:00 (105/264): flexiblas-netlib-3.3.1-5.fc39.aarch6 142 MB/s | 2.6 MB 00:00 (106/264): fontconfig-2.14.2-5.fc40.aarch64.rpm 37 MB/s | 301 kB 00:00 (107/264): fonts-filesystem-2.0.5-12.fc39.noarc 836 kB/s | 8.2 kB 00:00 (108/264): freeglut-3.4.0-4.fc39.aarch64.rpm 26 MB/s | 152 kB 00:00 (109/264): freeglut-devel-3.4.0-4.fc39.aarch64. 64 MB/s | 945 kB 00:00 (110/264): fribidi-1.0.13-2.fc39.aarch64.rpm 6.7 MB/s | 91 kB 00:00 (111/264): gnutls-3.8.1-1.fc40.aarch64.rpm 70 MB/s | 1.0 MB 00:00 (112/264): gl-manpages-1.1-29.20190306.fc40.noa 41 MB/s | 1.2 MB 00:00 (113/264): glib2-2.78.0-2.fc40.aarch64.rpm 124 MB/s | 2.8 MB 00:00 (114/264): google-noto-fonts-common-20230801-3. 1.7 MB/s | 17 kB 00:00 (115/264): graphite2-1.3.14-12.fc39.aarch64.rpm 17 MB/s | 93 kB 00:00 (116/264): google-noto-sans-vf-fonts-20230801-3 51 MB/s | 583 kB 00:00 (117/264): groff-base-1.23.0-2.fc39.aarch64.rpm 136 MB/s | 1.1 MB 00:00 (118/264): harfbuzz-8.2.1-1.fc40.aarch64.rpm 85 MB/s | 934 kB 00:00 (119/264): libICE-1.0.10-12.fc40.aarch64.rpm 13 MB/s | 69 kB 00:00 (120/264): libSM-1.2.3-14.fc40.aarch64.rpm 8.1 MB/s | 41 kB 00:00 (121/264): jbigkit-libs-2.1-26.fc39.aarch64.rpm 3.1 MB/s | 53 kB 00:00 (122/264): libSM-devel-1.2.3-14.fc40.aarch64.rp 2.7 MB/s | 12 kB 00:00 (123/264): libICE-devel-1.0.10-12.fc40.aarch64. 3.0 MB/s | 46 kB 00:00 (124/264): libX11-common-1.8.6-3.fc40.noarch.rp 26 MB/s | 175 kB 00:00 (125/264): libX11-1.8.6-3.fc40.aarch64.rpm 62 MB/s | 643 kB 00:00 (126/264): libX11-xcb-1.8.6-3.fc40.aarch64.rpm 2.8 MB/s | 12 kB 00:00 (127/264): libXau-devel-1.0.11-4.fc40.aarch64.r 2.7 MB/s | 14 kB 00:00 (128/264): libX11-devel-1.8.6-3.fc40.aarch64.rp 59 MB/s | 1.0 MB 00:00 (129/264): libXau-1.0.11-4.fc40.aarch64.rpm 2.9 MB/s | 32 kB 00:00 (130/264): libXdmcp-1.1.3-12.fc40.aarch64.rpm 7.3 MB/s | 35 kB 00:00 (131/264): libXext-devel-1.3.5-3.fc39.aarch64.r 16 MB/s | 85 kB 00:00 (132/264): libXfixes-devel-6.0.0-7.fc40.aarch64 3.5 MB/s | 12 kB 00:00 (133/264): libXext-1.3.5-3.fc39.aarch64.rpm 2.7 MB/s | 39 kB 00:00 (134/264): libXfixes-6.0.0-7.fc40.aarch64.rpm 1.6 MB/s | 19 kB 00:00 (135/264): libXi-1.8.1-3.fc40.aarch64.rpm 19 MB/s | 39 kB 00:00 (136/264): libXft-2.3.8-4.fc40.aarch64.rpm 5.7 MB/s | 71 kB 00:00 (137/264): libXi-devel-1.8.1-3.fc40.aarch64.rpm 13 MB/s | 116 kB 00:00 (138/264): libXfont2-2.0.3-16.fc40.aarch64.rpm 6.6 MB/s | 142 kB 00:00 (139/264): libXmu-devel-1.1.4-4.fc40.aarch64.rp 6.2 MB/s | 27 kB 00:00 (140/264): libXmu-1.1.4-4.fc40.aarch64.rpm 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Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : xorg-x11-proto-devel-2023.2-3.fc40.noarch 1/264 Installing : boost-system-1.81.0-6.fc40.aarch64 2/264 Installing : boost-chrono-1.81.0-6.fc40.aarch64 3/264 Installing : boost-thread-1.81.0-6.fc40.aarch64 4/264 Installing : libicu-73.2-2.fc39.aarch64 5/264 Installing : libglvnd-1:1.7.0-1.fc40.aarch64 6/264 Installing : expat-2.5.0-3.fc39.aarch64 7/264 Installing : libdrm-2.4.114-3.fc39.aarch64 8/264 Installing : libXau-1.0.11-4.fc40.aarch64 9/264 Installing : libxcb-1.13.1-12.fc39.aarch64 10/264 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 11/264 Installing : cmake-filesystem-3.27.4-8.fc40.aarch64 12/264 Installing : boost-regex-1.81.0-6.fc40.aarch64 13/264 Installing : python-rpm-macros-3.12-4.fc40.noarch 14/264 Installing : pixman-0.42.2-2.fc39.aarch64 15/264 Installing : mesa-libglapi-23.2.0~rc3-1.fc40.aarch64 16/264 Installing : libmpc-1.3.1-3.fc39.aarch64 17/264 Installing : libgfortran-13.2.1-3.fc40.aarch64 18/264 Installing 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libwebp-1.3.2-1.fc40.aarch64 156/264 Verifying : libxcb-1.13.1-12.fc39.aarch64 157/264 Verifying : libxcb-devel-1.13.1-12.fc39.aarch64 158/264 Verifying : libxcrypt-devel-4.4.36-2.fc39.aarch64 159/264 Verifying : libxkbfile-1.1.1-4.fc40.aarch64 160/264 Verifying : libxshmfence-1.3-13.fc39.aarch64 161/264 Verifying : libxslt-1.1.38-3.fc39.aarch64 162/264 Verifying : make-1:4.4.1-2.fc39.aarch64 163/264 Verifying : mesa-libEGL-23.2.0~rc3-1.fc40.aarch64 164/264 Verifying : mesa-libGL-23.2.0~rc3-1.fc40.aarch64 165/264 Verifying : mesa-libGL-devel-23.2.0~rc3-1.fc40.aarch64 166/264 Verifying : mesa-libGLU-9.0.3-1.fc39.aarch64 167/264 Verifying : mesa-libGLU-devel-9.0.3-1.fc39.aarch64 168/264 Verifying : mesa-libgbm-23.2.0~rc3-1.fc40.aarch64 169/264 Verifying : mesa-libglapi-23.2.0~rc3-1.fc40.aarch64 170/264 Verifying : mpdecimal-2.5.1-7.fc39.aarch64 171/264 Verifying : ncurses-6.4-7.20230520.fc40.aarch64 172/264 Verifying : nettle-3.9.1-2.fc39.aarch64 173/264 Verifying : openblas-0.3.21-6.fc39.aarch64 174/264 Verifying : openblas-openmp-0.3.21-6.fc39.aarch64 175/264 Verifying : openjpeg2-2.5.0-4.fc39.aarch64 176/264 Verifying : perl-Carp-1.54-500.fc39.noarch 177/264 Verifying : perl-Data-Dumper-2.188-501.fc39.aarch64 178/264 Verifying : perl-Digest-1.20-500.fc39.noarch 179/264 Verifying : perl-Digest-MD5-2.58-500.fc39.aarch64 180/264 Verifying : perl-Encode-4:3.19-500.fc39.aarch64 181/264 Verifying : perl-Exporter-5.77-500.fc39.noarch 182/264 Verifying : perl-File-Path-2.18-500.fc39.noarch 183/264 Verifying : perl-File-Temp-1:0.231.100-500.fc39.noarch 184/264 Verifying : perl-Getopt-Long-1:2.54-500.fc39.noarch 185/264 Verifying : perl-HTTP-Tiny-0.088-3.fc39.noarch 186/264 Verifying : perl-IO-Socket-IP-0.42-1.fc39.noarch 187/264 Verifying : perl-IO-Socket-SSL-2.083-3.fc39.noarch 188/264 Verifying : perl-MIME-Base64-3.16-500.fc39.aarch64 189/264 Verifying : perl-Mozilla-CA-20230821-1.fc40.noarch 190/264 Verifying : perl-Net-SSLeay-1.92-10.fc39.aarch64 191/264 Verifying : perl-PathTools-3.89-500.fc39.aarch64 192/264 Verifying : perl-Pod-Escapes-1:1.07-501.fc40.noarch 193/264 Verifying : perl-Pod-Perldoc-3.28.01-501.fc39.noarch 194/264 Verifying : perl-Pod-Simple-1:3.45-4.fc39.noarch 195/264 Verifying : perl-Pod-Usage-4:2.03-500.fc39.noarch 196/264 Verifying : perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64 197/264 Verifying : perl-Socket-4:2.037-3.fc39.aarch64 198/264 Verifying : perl-Storable-1:3.32-500.fc39.aarch64 199/264 Verifying : perl-Term-ANSIColor-5.01-501.fc39.noarch 200/264 Verifying : perl-Term-Cap-1.18-500.fc39.noarch 201/264 Verifying : perl-Text-ParseWords-3.31-500.fc39.noarch 202/264 Verifying : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 203/264 Verifying : perl-Time-Local-2:1.350-3.fc39.noarch 204/264 Verifying : perl-URI-5.21-1.fc40.noarch 205/264 Verifying : perl-constant-1.33-501.fc39.noarch 206/264 Verifying : perl-libnet-3.15-501.fc39.noarch 207/264 Verifying : perl-parent-1:0.241-500.fc39.noarch 208/264 Verifying : perl-podlators-1:5.01-500.fc39.noarch 209/264 Verifying : pixman-0.42.2-2.fc39.aarch64 210/264 Verifying : pybind11-devel-2.11.1-1.fc39.aarch64 211/264 Verifying : pyproject-rpm-macros-1.9.0-2.fc39.noarch 212/264 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 213/264 Verifying : python-rpm-macros-3.12-4.fc40.noarch 214/264 Verifying : python3-3.12.0~rc3-1.fc40.aarch64 215/264 Verifying : python3-appdirs-1.4.4-11.fc39.noarch 216/264 Verifying : python3-brotli-1.1.0-1.fc40.aarch64 217/264 Verifying : python3-cairo-1.24.0-2.fc39.aarch64 218/264 Verifying : python3-charset-normalizer-3.2.0-2.fc39.noarch 219/264 Verifying : python3-contourpy-1.1.0-2.fc39.aarch64 220/264 Verifying : python3-cycler-0.11.0-9.fc39.noarch 221/264 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 222/264 Verifying : python3-devel-3.12.0~rc3-1.fc40.aarch64 223/264 Verifying : python3-flaky-3.7.0-12.fc39.noarch 224/264 Verifying : python3-fonttools-4.42.1-1.fc40.aarch64 225/264 Verifying : python3-fs-2.4.16-5.fc39.noarch 226/264 Verifying : python3-idna-3.4-5.fc40.noarch 227/264 Verifying : python3-kiwisolver-1.4.5-1.fc40.aarch64 228/264 Verifying : python3-libs-3.12.0~rc3-1.fc40.aarch64 229/264 Verifying : python3-lxml-4.9.3-2.fc39.aarch64 230/264 Verifying : python3-matplotlib-3.8.0-1.fc40.aarch64 231/264 Verifying : python3-matplotlib-data-3.8.0-1.fc40.noarch 232/264 Verifying : python3-matplotlib-data-fonts-3.8.0-1.fc40.noarc 233/264 Verifying : python3-matplotlib-tk-3.8.0-1.fc40.aarch64 234/264 Verifying : python3-numpy-1:1.24.4-2.fc39.aarch64 235/264 Verifying : python3-numpy-f2py-1:1.24.4-2.fc39.aarch64 236/264 Verifying : python3-olefile-0.46-21.fc39.noarch 237/264 Verifying : python3-packaging-23.1-5.fc40.noarch 238/264 Verifying : python3-pillow-10.0.1-1.fc40.aarch64 239/264 Verifying : python3-pillow-tk-10.0.1-1.fc40.aarch64 240/264 Verifying : python3-pooch-1.5.2-12.fc39.noarch 241/264 Verifying : python3-pyparsing-3.0.9-11.fc39.noarch 242/264 Verifying : python3-pysocks-1.7.1-20.fc39.noarch 243/264 Verifying : python3-requests-2.28.2-6.fc40.noarch 244/264 Verifying : python3-rpm-generators-14-7.fc39.noarch 245/264 Verifying : python3-rpm-macros-3.12-4.fc40.noarch 246/264 Verifying : python3-scipy-1.11.1-1.fc39.aarch64 247/264 Verifying : python3-setuptools-67.7.2-7.fc40.noarch 248/264 Verifying : python3-six-1.16.0-12.fc39.noarch 249/264 Verifying : python3-tkinter-3.12.0~rc3-1.fc40.aarch64 250/264 Verifying : python3-urllib3+socks-1.26.16-3.fc40.noarch 251/264 Verifying : python3-urllib3-1.26.16-3.fc40.noarch 252/264 Verifying : python3-wheel-1:0.40.0-4.fc39.noarch 253/264 Verifying : rhash-1.4.3-3.fc39.aarch64 254/264 Verifying : tk-1:8.6.13-1.fc40.aarch64 255/264 Verifying : tzdata-2023c-3.fc40.noarch 256/264 Verifying : vim-filesystem-2:9.0.1882-1.fc40.noarch 257/264 Verifying : xkbcomp-1.4.6-6.fc39.aarch64 258/264 Verifying : xkeyboard-config-2.39-2.fc39.noarch 259/264 Verifying : xml-common-0.6.3-61.fc39.noarch 260/264 Verifying : xorg-x11-proto-devel-2023.2-3.fc40.noarch 261/264 Verifying : xorg-x11-server-Xvfb-1.20.14-24.fc39.aarch64 262/264 Verifying : xorg-x11-server-common-1.20.14-24.fc39.aarch64 263/264 Verifying : xorg-x11-xauth-1:1.1.2-4.fc39.aarch64 264/264 Installed: abattis-cantarell-vf-fonts-0.301-10.fc39.noarch annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.aarch64 boost-1.81.0-6.fc40.aarch64 boost-atomic-1.81.0-6.fc40.aarch64 boost-chrono-1.81.0-6.fc40.aarch64 boost-container-1.81.0-6.fc40.aarch64 boost-context-1.81.0-6.fc40.aarch64 boost-contract-1.81.0-6.fc40.aarch64 boost-coroutine-1.81.0-6.fc40.aarch64 boost-date-time-1.81.0-6.fc40.aarch64 boost-devel-1.81.0-6.fc40.aarch64 boost-fiber-1.81.0-6.fc40.aarch64 boost-filesystem-1.81.0-6.fc40.aarch64 boost-graph-1.81.0-6.fc40.aarch64 boost-iostreams-1.81.0-6.fc40.aarch64 boost-json-1.81.0-6.fc40.aarch64 boost-locale-1.81.0-6.fc40.aarch64 boost-log-1.81.0-6.fc40.aarch64 boost-math-1.81.0-6.fc40.aarch64 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libglvnd-gles-1:1.7.0-1.fc40.aarch64 libglvnd-glx-1:1.7.0-1.fc40.aarch64 libglvnd-opengl-1:1.7.0-1.fc40.aarch64 libicu-73.2-2.fc39.aarch64 libicu-devel-73.2-2.fc39.aarch64 libimagequant-4.0.1-5.fc39.aarch64 libjpeg-turbo-2.1.4-3.fc39.aarch64 liblerc-4.0.0-4.fc39.aarch64 libmpc-1.3.1-3.fc39.aarch64 libpng-2:1.6.40-1.fc40.aarch64 libqhull_r-1:8.0.2-2.fc40.aarch64 libraqm-0.8.0-5.fc39.aarch64 libstdc++-devel-13.2.1-3.fc40.aarch64 libtiff-4.4.0-8.fc40.aarch64 libtiff-devel-4.4.0-8.fc40.aarch64 libtool-ltdl-2.4.7-8.fc40.aarch64 libubsan-13.2.1-3.fc40.aarch64 libunwind-1.7.2-1.fc40.aarch64 libuv-1:1.46.0-2.fc39.aarch64 libwayland-client-1.22.0-2.fc39.aarch64 libwayland-server-1.22.0-2.fc39.aarch64 libwebp-1.3.2-1.fc40.aarch64 libxcb-1.13.1-12.fc39.aarch64 libxcb-devel-1.13.1-12.fc39.aarch64 libxcrypt-devel-4.4.36-2.fc39.aarch64 libxkbfile-1.1.1-4.fc40.aarch64 libxshmfence-1.3-13.fc39.aarch64 libxslt-1.1.38-3.fc39.aarch64 make-1:4.4.1-2.fc39.aarch64 mesa-libEGL-23.2.0~rc3-1.fc40.aarch64 mesa-libGL-23.2.0~rc3-1.fc40.aarch64 mesa-libGL-devel-23.2.0~rc3-1.fc40.aarch64 mesa-libGLU-9.0.3-1.fc39.aarch64 mesa-libGLU-devel-9.0.3-1.fc39.aarch64 mesa-libgbm-23.2.0~rc3-1.fc40.aarch64 mesa-libglapi-23.2.0~rc3-1.fc40.aarch64 mpdecimal-2.5.1-7.fc39.aarch64 ncurses-6.4-7.20230520.fc40.aarch64 nettle-3.9.1-2.fc39.aarch64 openblas-0.3.21-6.fc39.aarch64 openblas-openmp-0.3.21-6.fc39.aarch64 openjpeg2-2.5.0-4.fc39.aarch64 perl-AutoLoader-5.74-500.fc40.noarch perl-B-1.88-500.fc40.aarch64 perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-500.fc40.noarch perl-Data-Dumper-2.188-501.fc39.aarch64 perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.58-500.fc39.aarch64 perl-DynaLoader-1.54-500.fc40.aarch64 perl-Encode-4:3.19-500.fc39.aarch64 perl-Errno-1.37-500.fc40.aarch64 perl-Exporter-5.77-500.fc39.noarch perl-Fcntl-1.15-500.fc40.aarch64 perl-File-Basename-2.86-500.fc40.noarch perl-File-Path-2.18-500.fc39.noarch perl-File-Temp-1:0.231.100-500.fc39.noarch perl-File-stat-1.13-500.fc40.noarch perl-FileHandle-2.05-500.fc40.noarch perl-Getopt-Long-1:2.54-500.fc39.noarch perl-Getopt-Std-1.13-500.fc40.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-500.fc40.aarch64 perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.083-3.fc39.noarch perl-IPC-Open3-1.22-500.fc40.noarch perl-MIME-Base64-3.16-500.fc39.aarch64 perl-Mozilla-CA-20230821-1.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.aarch64 perl-POSIX-2.13-500.fc40.aarch64 perl-PathTools-3.89-500.fc39.aarch64 perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64 perl-SelectSaver-1.02-500.fc40.noarch perl-Socket-4:2.037-3.fc39.aarch64 perl-Storable-1:3.32-500.fc39.aarch64 perl-Symbol-1.09-500.fc40.noarch perl-Term-ANSIColor-5.01-501.fc39.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-500.fc40.noarch perl-constant-1.33-501.fc39.noarch perl-if-0.61.000-500.fc40.noarch perl-interpreter-4:5.38.0-500.fc40.aarch64 perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.0-500.fc40.aarch64 perl-locale-1.10-500.fc40.noarch perl-macros-4:5.38.0-500.fc40.noarch perl-mro-1.28-500.fc40.aarch64 perl-overload-1.37-500.fc40.noarch perl-overloading-0.02-500.fc40.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-vars-1.05-500.fc40.noarch pixman-0.42.2-2.fc39.aarch64 pybind11-devel-2.11.1-1.fc39.aarch64 pyproject-rpm-macros-1.9.0-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0~rc3-1.fc40.aarch64 python3-appdirs-1.4.4-11.fc39.noarch python3-brotli-1.1.0-1.fc40.aarch64 python3-cairo-1.24.0-2.fc39.aarch64 python3-charset-normalizer-3.2.0-2.fc39.noarch python3-contourpy-1.1.0-2.fc39.aarch64 python3-cycler-0.11.0-9.fc39.noarch python3-dateutil-1:2.8.2-10.fc39.noarch python3-devel-3.12.0~rc3-1.fc40.aarch64 python3-flaky-3.7.0-12.fc39.noarch python3-fonttools-4.42.1-1.fc40.aarch64 python3-fs-2.4.16-5.fc39.noarch python3-idna-3.4-5.fc40.noarch python3-kiwisolver-1.4.5-1.fc40.aarch64 python3-libs-3.12.0~rc3-1.fc40.aarch64 python3-lxml-4.9.3-2.fc39.aarch64 python3-matplotlib-3.8.0-1.fc40.aarch64 python3-matplotlib-data-3.8.0-1.fc40.noarch python3-matplotlib-data-fonts-3.8.0-1.fc40.noarch python3-matplotlib-tk-3.8.0-1.fc40.aarch64 python3-numpy-1:1.24.4-2.fc39.aarch64 python3-numpy-f2py-1:1.24.4-2.fc39.aarch64 python3-olefile-0.46-21.fc39.noarch python3-packaging-23.1-5.fc40.noarch python3-pillow-10.0.1-1.fc40.aarch64 python3-pillow-tk-10.0.1-1.fc40.aarch64 python3-pooch-1.5.2-12.fc39.noarch python3-pyparsing-3.0.9-11.fc39.noarch python3-pysocks-1.7.1-20.fc39.noarch python3-requests-2.28.2-6.fc40.noarch python3-rpm-generators-14-7.fc39.noarch python3-rpm-macros-3.12-4.fc40.noarch python3-scipy-1.11.1-1.fc39.aarch64 python3-setuptools-67.7.2-7.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-tkinter-3.12.0~rc3-1.fc40.aarch64 python3-urllib3-1.26.16-3.fc40.noarch python3-urllib3+socks-1.26.16-3.fc40.noarch python3-wheel-1:0.40.0-4.fc39.noarch rhash-1.4.3-3.fc39.aarch64 tcl-1:8.6.13-1.fc40.aarch64 tk-1:8.6.13-1.fc40.aarch64 tzdata-2023c-3.fc40.noarch vim-filesystem-2:9.0.1882-1.fc40.noarch xkbcomp-1.4.6-6.fc39.aarch64 xkeyboard-config-2.39-2.fc39.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch xorg-x11-server-Xvfb-1.20.14-24.fc39.aarch64 xorg-x11-server-common-1.20.14-24.fc39.aarch64 xorg-x11-xauth-1:1.1.2-4.fc39.aarch64 zlib-ng-compat-devel-2.1.3-5.fc40.aarch64 Complete! Finish: build setup for smoldyn-2.72-2.fc40.src.rpm Start: rpmbuild smoldyn-2.72-2.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1692316800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.JCkAAe + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.72 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.72.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.72 + rm -rf /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (smoldyn-fix_libpaths.patch): + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 370 (offset 44 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 490 (offset 5 lines). Hunk #2 succeeded at 522 (offset 52 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.h9rTLr + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.72 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 13.2.1 -- The C compiler identification is GNU 13.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.72' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.11.1") -- [TEST] Found 15 test scripts -- Configuring done (2.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.72 -B/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend /usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/libSteve /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build /usr/bin/gmake -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o [ 3%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o [ 3%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o [ 4%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/List.c cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/StructuredGrid.cpp cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Geometry.c cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Species.cpp [ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/math2.c [ 7%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/opengl2.c [ 8%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/ReactionEquation.cpp [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.cpp [ 11%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/parse.c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/parse.c: In function ‘Parse_ReadLine’: /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/parse.c:382:60: warning: comparison is always true due to limited range of data type [-Wtype-limits] 382 | while((ch=fgetc(pfp->fptr))!=EOF && ch!='\n' && ch!='\r'); | ^~ [ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/queue.c [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o [ 14%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Kairos.cpp cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.c [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Rn.c [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd 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-std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/rxnparam.c [ 19%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Io.cpp [ 20%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Geometry.cpp [ 22%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SimCommand.c [ 23%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Sphere.c [ 24%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SurfaceParam.c [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Zn.c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/string2.c: In function ‘strmatheval’: /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/string2.c:1415:9: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation] 1415 | strncpy(expr,expression,STRCHAR); | ^ [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT.c gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 29%] Built target Steve gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 29%] Built target nsv /usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend /usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build 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CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o [ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o [ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o [ 34%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 35%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In file included from /usr/include/stdio.h:964, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ In file included from /usr/include/stdio.h:964, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=] 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here 1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1); | ^~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In file included from /usr/include/stdio.h:964, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=] 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here 1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=] 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here 1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=] 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here 1442 | CHECKS(!er,"error adding monomer %s",str1); }} | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here 1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=] 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here 1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1); | ^~ In function ‘snprintf’, inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c [ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 39%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:964, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 40%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 41%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c [ 43%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c [ 44%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 45%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 46%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolport.c [ 48%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 49%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 50%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c [ 51%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 53%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolrule.c In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:964, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=] 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here 894 | CHECKS(s>=0,"surface name '%s' not recognized",nm); | ^~ In file included from /usr/include/stdio.h:964, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9: In function ‘snprintf’, inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3: /usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 54%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c [ 55%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp [ 56%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 58%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 59%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c [ 60%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 61%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 62%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c [ 64%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 65%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp [ 66%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o 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CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolport.c [ 69%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 71%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd 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-Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolreact.c [ 75%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp [ 76%] Linking CXX static library libsmoldyn_static.a /usr/bin/cmake -P CMakeFiles/smoldyn_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsmoldyn_static.a CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 76%] Built target smoldyn_static [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes] /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes] [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 80%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp [ 81%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolrule.c [ 82%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes] /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes] /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=] 166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString); | ^~ ~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12: In function ‘sprintf’, inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 83%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c [ 85%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c [ 86%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp [ 87%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.72 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’ 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’ 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ [ 88%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o 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Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 88%] Built target _pysmoldyn /usr/bin/gmake -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build gmake[2]: Entering directory 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/CallbackFunc.cpp [ 91%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/Command.cpp [ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/Simulation.cpp /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/module.cpp /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.72 libsmoldyn_shared.so.2 libsmoldyn_shared.so gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 93%] Built target smoldyn_shared /usr/bin/gmake -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 95%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.cpp [ 96%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.72 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 96%] Built target smoldyn [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /builddir/build/BUILD/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1045:16: warning: type ‘struct simstruct’ violates the C++ One Definition Rule [-Wodr] 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a different type is defined in another translation unit 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1106:19: note: the first difference of corresponding definitions is field ‘callbacks’ 1106 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a type with different number of fields is defined in another translation unit 1045 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’ 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’ 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’: /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [ 97%] Built target _smoldyn /usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build /usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build [100%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py/smoldyn gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [100%] Built target copy_python_tree running bdist_wheel running build running build_py creating build creating build/lib.linux-aarch64-cpython-312 creating build/lib.linux-aarch64-cpython-312/smoldyn copying smoldyn/__init__.py -> build/lib.linux-aarch64-cpython-312/smoldyn copying smoldyn/__main__.py -> build/lib.linux-aarch64-cpython-312/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-aarch64-cpython-312/smoldyn copying smoldyn/types.py -> build/lib.linux-aarch64-cpython-312/smoldyn copying smoldyn/utils.py -> build/lib.linux-aarch64-cpython-312/smoldyn creating build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so -> build/lib.linux-aarch64-cpython-312/smoldyn running build_ext /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64 creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/smoldyn copying build/lib.linux-aarch64-cpython-312/smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/smoldyn creating build/bdist.linux-aarch64/wheel/smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators copying build/lib.linux-aarch64-cpython-312/smoldyn/utils.py -> build/bdist.linux-aarch64/wheel/smoldyn copying build/lib.linux-aarch64-cpython-312/smoldyn/types.py -> build/bdist.linux-aarch64/wheel/smoldyn copying build/lib.linux-aarch64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-aarch64/wheel/smoldyn copying build/lib.linux-aarch64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-aarch64/wheel/smoldyn copying build/lib.linux-aarch64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-aarch64/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-aarch64/wheel/smoldyn-2.72-py3.12.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/smoldyn-2.72.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/smoldyn-2.72-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.72.dist-info/METADATA' adding 'smoldyn-2.72.dist-info/WHEEL' adding 'smoldyn-2.72.dist-info/top_level.txt' adding 'smoldyn-2.72.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' [100%] Built target wheel gmake[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.TYjAvW + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/libsmoldyn_shared.so.2.72 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/include/smoldyn/smoldynconfigure.h + pushd redhat-linux-build/py ~/build/BUILD/Smoldyn-2.72/redhat-linux-build/py ~/build/BUILD/Smoldyn-2.72 + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12/site-packages/ + popd ~/build/BUILD/Smoldyn-2.72 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.72-2.fc40 --unique-debug-suffix -2.72-2.fc40.aarch64 --unique-debug-src-base smoldyn-2.72-2.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.72 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.72-2.fc40.aarch64 3558 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.6DPlWh + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' ~/build/BUILD/Smoldyn-2.72/redhat-linux-build ~/build/BUILD/Smoldyn-2.72 + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.72 + pushd redhat-linux-build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:424 Here: 424 /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:436 Here: 436 /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:408 Test project /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_actions /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_api /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_func /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_var /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_getters /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sanity /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:1414 Checking test dependency graph... /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:1443 Checking test dependency graph end /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 2 /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:526 Start 2: test_api /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_api.py" /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:806 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:985 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:988 Testing test_api ... /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.26 sec /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 3 /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:526 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:806 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:985 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:988 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.29 sec /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 14 /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:526 Start 14: test_sanity /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:806 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: (, '') /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:985 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:988 Testing test_sanity ... /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.23 sec /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309 Current_Time: Sep 23 08:57 UTC /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:447 The following tests passed: /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:452 test_api /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:452 test_biosimulators /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:452 test_sanity /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:613 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:629 Total Test time (real) = 0.79 sec + popd + RPM_EC=0 ~/build/BUILD/Smoldyn-2.72 ++ jobs -p + exit 0 Processing files: smoldyn-2.72-2.fc40.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.hie3Dp + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/README.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.72-2.fc40 smoldyn(aarch-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.72-2.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.8zetJT + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/BioNetGen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/CMakeLists.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/Doxyfile.in /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/README.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/SmolCrowd /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/SmolEmulate /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/Smoldyn /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/_static /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/build_doxygen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/conf.py /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/doxygen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/examples /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/index.rst /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/libSteve /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/python /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/requirements.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/tikz /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/user /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.72-2.fc40.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.rxuKZ1 + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.72/License.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.72/LICENSE /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.72-2.fc40 smoldyn-libs(aarch-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.72-2.fc40.aarch64 Provides: smoldyn-libs-devel = 2.72-2.fc40 smoldyn-libs-devel(aarch-64) = 2.72-2.fc40 smoldyn-libs-static = 0:2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.72-2.fc40.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.2BVd5R + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/License.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.72/LICENSE /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.72-2.fc40 python3-smoldyn = 2.72-2.fc40 python3-smoldyn(aarch-64) = 2.72-2.fc40 python3.12-smoldyn = 2.72-2.fc40 python3.12dist(smoldyn) = 2.72 python3dist(smoldyn) = 2.72 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.72-2.fc40 Processing files: smoldyn-debugsource-2.72-2.fc40.aarch64 Provides: smoldyn-debugsource = 2.72-2.fc40 smoldyn-debugsource(aarch-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.72-2.fc40.aarch64 Provides: debuginfo(build-id) = a4a19cee4bf132b7558d271d1dac48cab3c2332c smoldyn-debuginfo = 2.72-2.fc40 smoldyn-debuginfo(aarch-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(aarch-64) = 2.72-2.fc40 Processing files: smoldyn-libs-debuginfo-2.72-2.fc40.aarch64 Provides: debuginfo(build-id) = c0e303e51a4deb47c1bffa7a9acda9195dae457b libsmoldyn_shared.so.2.72-2.72-2.fc40.aarch64.debug()(64bit) smoldyn-libs-debuginfo = 2.72-2.fc40 smoldyn-libs-debuginfo(aarch-64) = 2.72-2.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(aarch-64) = 2.72-2.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64 Wrote: /builddir/build/RPMS/python3-smoldyn-2.72-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.72-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.72-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.72-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.72-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.72-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.72-2.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.72-2.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.H3GCtY + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.72 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Llcv4a + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS + rm -rf Smoldyn-2.72 Smoldyn-2.72.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild smoldyn-2.72-2.fc40.src.rpm Finish: build phase for smoldyn-2.72-2.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.72-2.fc40.src.rpm) Config(child) 1 minutes 46 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "smoldyn", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "aarch64" }, { "name": "python3-smoldyn", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "aarch64" }, { "name": "smoldyn", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "src" }, { "name": "smoldyn-doc", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "noarch" }, { "name": "smoldyn-debuginfo", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "aarch64" }, { "name": "smoldyn-libs", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "aarch64" }, { "name": "smoldyn-libs-debuginfo", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "aarch64" }, { "name": "smoldyn-libs-devel", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "aarch64" }, { "name": "smoldyn-debugsource", "epoch": null, "version": "2.72", "release": "2.fc40", "arch": "aarch64" } ] } RPMResults finished