Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d4' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408136-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.69 PID: 7852 Logging PID: 7853 Task: {'appstream': False, 'background': True, 'build_id': 6408136, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '0183089426e426977962f16d688400b85c69c5b1', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/dolfin', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'dolfin', 'package_version': '2019.1.0.post0-46', 'project_dirname': 'zlib-ng-compat-mpb', 'project_name': 'zlib-ng-compat-mpb', 'project_owner': 'tuliom', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom', 'source_json': {}, 'source_type': None, 'submitter': 'tuliom', 'tags': [], 'task_id': '6408136-fedora-rawhide-x86_64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/dolfin /var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/dolfin', '/var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin'... Running: git checkout 0183089426e426977962f16d688400b85c69c5b1 -- cmd: ['git', 'checkout', '0183089426e426977962f16d688400b85c69c5b1', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin rc: 0 stdout: stderr: Note: switching to '0183089426e426977962f16d688400b85c69c5b1'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 0183089 automatic import of dolfin Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading dolfin-2019.1.0.post0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o dolfin-2019.1.0.post0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/dolfin/dolfin-2019.1.0.post0.tar.gz/md5/79a564ec8f605b8ec434366828e84b60/dolfin-2019.1.0.post0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 10.2M 100 10.2M 0 0 22.6M 0 --:--:-- --:--:-- --:--:-- 22.7M INFO: Reading stdout from command: md5sum dolfin-2019.1.0.post0.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin/dolfin.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695051381.914141 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin/dolfin.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.1.1 INFO: Mock Version: 5.1.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695051381.914141/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695051381.914141/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/9c51538352da1b77ef981d7b9d8c022ddd2b3cf27c94d14e10f3d86439cd490d/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/9c51538352da1b77ef981d7b9d8c022ddd2b3cf27c94d14e10f3d86439cd490d/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 25 MB/s | 4.6 MB 00:00 fedora 18 MB/s | 73 MB 00:04 Last metadata expiration check: 0:00:01 ago on Mon Sep 18 15:36:28 2023. Package python3-dnf-4.16.2-4.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd x86_64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 3.5 M Downloading Packages: (1/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm 1.1 MB/s | 155 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm 982 kB/s | 157 kB 00:00 (3/7): python3-distro-1.8.0-6.fc39.noarch.rpm 1.7 MB/s | 49 kB 00:00 (4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 1.9 MB/s | 355 kB 00:00 (5/7): python3-six-1.16.0-12.fc39.noarch.rpm 1.5 MB/s | 41 kB 00:00 (6/7): python3-systemd-235-5.fc39.x86_64.rpm 3.5 MB/s | 107 kB 00:00 (7/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 5.1 MB/s | 293 kB 00:00 -------------------------------------------------------------------------------- Total 4.4 MB/s | 1.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.x86_64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 5/7 Installing : python3-dbus-1.3.2-4.fc39.x86_64 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.x86_64 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.x86_64 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.x86_64 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1695051381.914141/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 29 kB/s | 1.5 kB 00:00 Copr repository 22 MB/s | 4.6 MB 00:00 fedora 248 kB/s | 7.0 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-5.fc39 fedora 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.4-1.fc40 fedora 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 40-0.7 fedora 18 k findutils x86_64 1:4.9.0-6.fc40 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38.9000-8.fc40 copr_base 73 k grep x86_64 3.11-5.fc40 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 270-1.fc40 copr_base 74 k rpm-build x86_64 4.18.99-1.fc40 fedora 78 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-1.fc40 fedora 1.3 M tar x86_64 2:1.35-2.fc40 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc40 copr_base 1.1 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-4.fc40 fedora 117 k authselect x86_64 1.4.2-3.fc39 fedora 144 k authselect-libs x86_64 1.4.2-3.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.41-5.fc40 fedora 6.3 M binutils-gold x86_64 2.41-5.fc40 fedora 796 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M cracklib x86_64 2.9.11-2.fc40 copr_base 83 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k curl x86_64 8.3.0-1.fc40 copr_base 354 k cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k debugedit x86_64 5.0-10.fc39 fedora 77 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.189-6.fc40 copr_base 530 k elfutils-debuginfod-client x86_64 0.189-6.fc40 copr_base 38 k elfutils-default-yama-scope noarch 0.189-6.fc40 copr_base 14 k elfutils-libelf x86_64 0.189-6.fc40 copr_base 195 k elfutils-libs x86_64 0.189-6.fc40 copr_base 259 k fedora-gpg-keys noarch 40-0.1 fedora 130 k fedora-release noarch 40-0.7 fedora 8.0 k fedora-release-identity-basic noarch 40-0.7 fedora 8.8 k fedora-repos noarch 40-0.1 fedora 9.4 k fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k file x86_64 5.45-1.fc40 copr_base 50 k file-libs x86_64 5.45-1.fc40 copr_base 764 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 13.2-8.fc40 fedora 4.2 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38.9000-8.fc40 copr_base 2.2 M glibc-common x86_64 2.38.9000-8.fc40 copr_base 350 k glibc-gconv-extra x86_64 2.38.9000-8.fc40 copr_base 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k krb5-libs x86_64 1.21.2-1.fc40 fedora 765 k libacl x86_64 2.3.1-9.fc40 fedora 23 k libarchive x86_64 3.7.2-1.fc40 copr_base 408 k libattr x86_64 2.5.1-9.fc40 fedora 18 k libblkid x86_64 2.39.2-1.fc40 copr_base 116 k libbrotli x86_64 1.1.0-1.fc40 fedora 336 k libcap x86_64 2.48-7.fc39 fedora 68 k libcap-ng x86_64 0.8.3-8.fc40 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.3.0-1.fc40 copr_base 344 k libdb x86_64 5.3.28-58.fc40 copr_base 759 k libeconf x86_64 0.5.2-1.fc40 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc40 copr_base 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-1.fc39 fedora 109 k libgomp x86_64 13.2.1-1.fc39 fedora 319 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc40 copr_base 155 k libnghttp2 x86_64 1.56.0-1.fc40 copr_base 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc40 copr_base 67 k libssh x86_64 0.10.5-2.fc39 fedora 211 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ x86_64 13.2.1-1.fc39 fedora 860 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.3-1.rc2.fc39 fedora 94 k libunistring x86_64 1.1-5.fc40 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc40 copr_base 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.11.5-1.fc40 copr_base 697 k libzstd x86_64 1.5.5-4.fc40 copr_base 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k ncurses-libs x86_64 6.4-7.20230520.fc40 fedora 337 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.1-4.fc40 copr_base 2.2 M p11-kit x86_64 0.25.0-2.fc39 fedora 486 k p11-kit-trust x86_64 0.25.0-2.fc39 fedora 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-2.fc39 fedora 548 k pam-libs x86_64 1.5.3-2.fc39 fedora 58 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.18.99-1.fc40 fedora 538 k rpm-build-libs x86_64 4.18.99-1.fc40 fedora 96 k rpm-libs x86_64 4.18.99-1.fc40 fedora 312 k rpm-sequoia x86_64 1.5.0-1.fc40 fedora 883 k rust-srpm-macros noarch 24-5.fc40 fedora 12 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.43.1-1.fc40 fedora 688 k systemd-libs x86_64 254.1-2.fc40 fedora 688 k tzdata noarch 2023c-3.fc40 fedora 718 k util-linux-core x86_64 2.39.2-1.fc40 copr_base 479 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-38.fc39 fedora 266 k zlib-ng-compat x86_64 2.1.3-3.fc40 copr_base 79 k zstd x86_64 1.5.5-4.fc40 copr_base 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total size: 53 M Installed size: 182 M Downloading Packages: [SKIPPED] cracklib-2.9.11-2.fc40.x86_64.rpm: Already downloaded [SKIPPED] curl-8.3.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-0.189-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.189-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.189-6.fc40.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.189-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.189-6.fc40.x86_64.rpm: Already downloaded [SKIPPED] file-5.45-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.45-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] glibc-2.38.9000-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.38.9000-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.38.9000-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.38.9000-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.7.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libcurl-8.3.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-58.fc40.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.56.0-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.11.5-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.5-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.1.1-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-270-1.fc40.noarch.rpm: Already downloaded [SKIPPED] util-linux-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.39.2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] zlib-ng-compat-2.1.3-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.5-4.fc40.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] 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Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-1.fc39.x86_64 1/153 Running scriptlet: libgcc-13.2.1-1.fc39.x86_64 1/153 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Installing : tzdata-2023c-3.fc40.noarch 3/153 Installing : fedora-release-identity-basic-40-0.7.noarch 4/153 Installing : fedora-repos-rawhide-40-0.1.noarch 5/153 Installing : fedora-gpg-keys-40-0.1.noarch 6/153 Installing : fedora-repos-40-0.1.noarch 7/153 Installing : fedora-release-common-40-0.7.noarch 8/153 Installing : fedora-release-40-0.7.noarch 9/153 Installing : setup-2.14.4-1.fc39.noarch 10/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 10/153 Installing : filesystem-3.18-6.fc39.x86_64 11/153 Installing : basesystem-11-18.fc39.noarch 12/153 Installing : rust-srpm-macros-24-5.fc40.noarch 13/153 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p11-kit-trust-0.25.0-2.fc39.x86_64 104/153 Running scriptlet: p11-kit-trust-0.25.0-2.fc39.x86_64 104/153 Installing : libverto-0.3.2-6.fc39.x86_64 105/153 Installing : xxhash-libs-0.8.2-1.fc39.x86_64 106/153 Installing : libssh-config-0.10.5-2.fc39.noarch 107/153 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 108/153 Installing : gnat-srpm-macros-6-3.fc39.noarch 109/153 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 110/153 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 111/153 Installing : coreutils-common-9.4-1.fc40.x86_64 112/153 Installing : openssl-libs-1:3.1.1-4.fc40.x86_64 113/153 Installing : coreutils-9.4-1.fc40.x86_64 114/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 115/153 Installing : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 115/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 115/153 Installing : krb5-libs-1.21.2-1.fc40.x86_64 116/153 Installing : libtirpc-1.3.3-1.rc2.fc39.x86_64 117/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 118/153 Installing : authselect-libs-1.4.2-3.fc39.x86_64 118/153 Installing : gzip-1.12-6.fc39.x86_64 119/153 Installing : cracklib-2.9.11-2.fc40.x86_64 120/153 Installing : libpwquality-1.4.5-6.fc39.x86_64 121/153 Installing : authselect-1.4.2-3.fc39.x86_64 122/153 Installing : libnsl2-2.0.0-6.fc39.x86_64 123/153 Installing : pam-1.5.3-2.fc39.x86_64 124/153 Installing : libssh-0.10.5-2.fc39.x86_64 125/153 Installing : libarchive-3.7.2-1.fc40.x86_64 126/153 Installing : libevent-2.1.12-9.fc39.x86_64 127/153 Installing : openldap-2.6.6-1.fc39.x86_64 128/153 Installing : libcurl-8.3.0-1.fc40.x86_64 129/153 Installing : elfutils-libs-0.189-6.fc40.x86_64 130/153 Installing : elfutils-debuginfod-client-0.189-6.fc40.x86_64 131/153 Installing : binutils-gold-2.41-5.fc40.x86_64 132/153 Running scriptlet: binutils-gold-2.41-5.fc40.x86_64 132/153 Installing : binutils-2.41-5.fc40.x86_64 133/153 Running scriptlet: binutils-2.41-5.fc40.x86_64 133/153 Installing : elfutils-0.189-6.fc40.x86_64 134/153 Installing : gdb-minimal-13.2-8.fc40.x86_64 135/153 Installing : debugedit-5.0-10.fc39.x86_64 136/153 Installing : curl-8.3.0-1.fc40.x86_64 137/153 Installing : rpm-sequoia-1.5.0-1.fc40.x86_64 138/153 Installing : rpm-libs-4.18.99-1.fc40.x86_64 139/153 Running scriptlet: rpm-4.18.99-1.fc40.x86_64 140/153 Installing : rpm-4.18.99-1.fc40.x86_64 140/153 Installing : efi-srpm-macros-5-9.fc39.noarch 141/153 Installing : lua-srpm-macros-1-9.fc39.noarch 142/153 Installing : rpm-build-libs-4.18.99-1.fc40.x86_64 143/153 Installing : ansible-srpm-macros-1-11.fc39.noarch 144/153 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 145/153 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 146/153 Installing : go-srpm-macros-3.2.0-7.fc40.noarch 147/153 Installing : python-srpm-macros-3.12-4.fc40.noarch 148/153 Installing : redhat-rpm-config-270-1.fc40.noarch 149/153 Installing : rpm-build-4.18.99-1.fc40.x86_64 150/153 Installing : util-linux-2.39.2-1.fc40.x86_64 151/153 Installing : which-2.21-40.fc39.x86_64 152/153 Installing : info-7.0.3-3.fc39.x86_64 153/153 Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 153/153 Running scriptlet: rpm-4.18.99-1.fc40.x86_64 153/153 Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153 Verifying : cracklib-2.9.11-2.fc40.x86_64 1/153 Verifying : curl-8.3.0-1.fc40.x86_64 2/153 Verifying : elfutils-0.189-6.fc40.x86_64 3/153 Verifying : elfutils-debuginfod-client-0.189-6.fc40.x86_64 4/153 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 5/153 Verifying : elfutils-libelf-0.189-6.fc40.x86_64 6/153 Verifying : elfutils-libs-0.189-6.fc40.x86_64 7/153 Verifying : file-5.45-1.fc40.x86_64 8/153 Verifying : file-libs-5.45-1.fc40.x86_64 9/153 Verifying : glibc-2.38.9000-8.fc40.x86_64 10/153 Verifying : glibc-common-2.38.9000-8.fc40.x86_64 11/153 Verifying : glibc-gconv-extra-2.38.9000-8.fc40.x86_64 12/153 Verifying : glibc-minimal-langpack-2.38.9000-8.fc40.x86_64 13/153 Verifying : libarchive-3.7.2-1.fc40.x86_64 14/153 Verifying : libblkid-2.39.2-1.fc40.x86_64 15/153 Verifying : libcurl-8.3.0-1.fc40.x86_64 16/153 Verifying : libdb-5.3.28-58.fc40.x86_64 17/153 Verifying : libfdisk-2.39.2-1.fc40.x86_64 18/153 Verifying : libmount-2.39.2-1.fc40.x86_64 19/153 Verifying : libnghttp2-1.56.0-1.fc40.x86_64 20/153 Verifying : libsmartcols-2.39.2-1.fc40.x86_64 21/153 Verifying : libuuid-2.39.2-1.fc40.x86_64 22/153 Verifying : libxml2-2.11.5-1.fc40.x86_64 23/153 Verifying : libzstd-1.5.5-4.fc40.x86_64 24/153 Verifying : openssl-libs-1:3.1.1-4.fc40.x86_64 25/153 Verifying : redhat-rpm-config-270-1.fc40.noarch 26/153 Verifying : util-linux-2.39.2-1.fc40.x86_64 27/153 Verifying : util-linux-core-2.39.2-1.fc40.x86_64 28/153 Verifying : zlib-ng-compat-2.1.3-3.fc40.x86_64 29/153 Verifying : zstd-1.5.5-4.fc40.x86_64 30/153 Verifying : alternatives-1.25-1.fc39.x86_64 31/153 Verifying : ansible-srpm-macros-1-11.fc39.noarch 32/153 Verifying : audit-libs-3.1.2-4.fc40.x86_64 33/153 Verifying : authselect-1.4.2-3.fc39.x86_64 34/153 Verifying : authselect-libs-1.4.2-3.fc39.x86_64 35/153 Verifying : basesystem-11-18.fc39.noarch 36/153 Verifying : bash-5.2.15-5.fc39.x86_64 37/153 Verifying : binutils-2.41-5.fc40.x86_64 38/153 Verifying : binutils-gold-2.41-5.fc40.x86_64 39/153 Verifying : bzip2-1.0.8-16.fc39.x86_64 40/153 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 41/153 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 42/153 Verifying : coreutils-9.4-1.fc40.x86_64 43/153 Verifying : coreutils-common-9.4-1.fc40.x86_64 44/153 Verifying : cpio-2.14-4.fc39.x86_64 45/153 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 46/153 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 47/153 Verifying : debugedit-5.0-10.fc39.x86_64 48/153 Verifying : diffutils-3.10-3.fc39.x86_64 49/153 Verifying : dwz-0.15-3.fc39.x86_64 50/153 Verifying : ed-1.19-4.fc39.x86_64 51/153 Verifying : efi-srpm-macros-5-9.fc39.noarch 52/153 Verifying : fedora-gpg-keys-40-0.1.noarch 53/153 Verifying : fedora-release-40-0.7.noarch 54/153 Verifying : fedora-release-common-40-0.7.noarch 55/153 Verifying : fedora-release-identity-basic-40-0.7.noarch 56/153 Verifying : fedora-repos-40-0.1.noarch 57/153 Verifying : fedora-repos-rawhide-40-0.1.noarch 58/153 Verifying : filesystem-3.18-6.fc39.x86_64 59/153 Verifying : findutils-1:4.9.0-6.fc40.x86_64 60/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 61/153 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 62/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 63/153 Verifying : gawk-5.2.2-2.fc39.x86_64 64/153 Verifying : gdb-minimal-13.2-8.fc40.x86_64 65/153 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 66/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 67/153 Verifying : gmp-1:6.2.1-5.fc39.x86_64 68/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 69/153 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 70/153 Verifying : grep-3.11-5.fc40.x86_64 71/153 Verifying : gzip-1.12-6.fc39.x86_64 72/153 Verifying : info-7.0.3-3.fc39.x86_64 73/153 Verifying : jansson-2.13.1-7.fc39.x86_64 74/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 75/153 Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 76/153 Verifying : krb5-libs-1.21.2-1.fc40.x86_64 77/153 Verifying : libacl-2.3.1-9.fc40.x86_64 78/153 Verifying : libattr-2.5.1-9.fc40.x86_64 79/153 Verifying : libbrotli-1.1.0-1.fc40.x86_64 80/153 Verifying : libcap-2.48-7.fc39.x86_64 81/153 Verifying : libcap-ng-0.8.3-8.fc40.x86_64 82/153 Verifying : libcom_err-1.47.0-2.fc39.x86_64 83/153 Verifying : libeconf-0.5.2-1.fc40.x86_64 84/153 Verifying : libevent-2.1.12-9.fc39.x86_64 85/153 Verifying : libffi-3.4.4-4.fc39.x86_64 86/153 Verifying : libgcc-13.2.1-1.fc39.x86_64 87/153 Verifying : libgomp-13.2.1-1.fc39.x86_64 88/153 Verifying : libidn2-2.3.4-3.fc39.x86_64 89/153 Verifying : libnsl2-2.0.0-6.fc39.x86_64 90/153 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 91/153 Verifying : libpsl-0.21.2-4.fc39.x86_64 92/153 Verifying : libpwquality-1.4.5-6.fc39.x86_64 93/153 Verifying : libselinux-3.5-5.fc39.x86_64 94/153 Verifying : libsemanage-3.5-4.fc39.x86_64 95/153 Verifying : libsepol-3.5-2.fc39.x86_64 96/153 Verifying : libsigsegv-2.14-5.fc39.x86_64 97/153 Verifying : libssh-0.10.5-2.fc39.x86_64 98/153 Verifying : libssh-config-0.10.5-2.fc39.noarch 99/153 Verifying : libstdc++-13.2.1-1.fc39.x86_64 100/153 Verifying : libtasn1-4.19.0-3.fc39.x86_64 101/153 Verifying : libtirpc-1.3.3-1.rc2.fc39.x86_64 102/153 Verifying : libunistring-1.1-5.fc40.x86_64 103/153 Verifying : libutempter-1.2.1-10.fc39.x86_64 104/153 Verifying : libverto-0.3.2-6.fc39.x86_64 105/153 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 106/153 Verifying : lua-libs-5.4.6-3.fc39.x86_64 107/153 Verifying : lua-srpm-macros-1-9.fc39.noarch 108/153 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 109/153 Verifying : mpfr-4.2.0-3.fc39.x86_64 110/153 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 111/153 Verifying : ncurses-libs-6.4-7.20230520.fc40.x86_64 112/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 113/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 114/153 Verifying : openldap-2.6.6-1.fc39.x86_64 115/153 Verifying : p11-kit-0.25.0-2.fc39.x86_64 116/153 Verifying : p11-kit-trust-0.25.0-2.fc39.x86_64 117/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 118/153 Verifying : pam-1.5.3-2.fc39.x86_64 119/153 Verifying : pam-libs-1.5.3-2.fc39.x86_64 120/153 Verifying : patch-2.7.6-22.fc39.x86_64 121/153 Verifying : pcre2-10.42-1.fc39.2.x86_64 122/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 123/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 124/153 Verifying : pkgconf-1.9.5-2.fc39.x86_64 125/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 126/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 127/153 Verifying : popt-1.19-3.fc39.x86_64 128/153 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 129/153 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 130/153 Verifying : python-srpm-macros-3.12-4.fc40.noarch 131/153 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 132/153 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 133/153 Verifying : readline-8.2-4.fc39.x86_64 134/153 Verifying : rpm-4.18.99-1.fc40.x86_64 135/153 Verifying : rpm-build-4.18.99-1.fc40.x86_64 136/153 Verifying : rpm-build-libs-4.18.99-1.fc40.x86_64 137/153 Verifying : rpm-libs-4.18.99-1.fc40.x86_64 138/153 Verifying : rpm-sequoia-1.5.0-1.fc40.x86_64 139/153 Verifying : rust-srpm-macros-24-5.fc40.noarch 140/153 Verifying : sed-4.8-14.fc39.x86_64 141/153 Verifying : setup-2.14.4-1.fc39.noarch 142/153 Verifying : shadow-utils-2:4.14.0-1.fc40.x86_64 143/153 Verifying : sqlite-libs-3.43.1-1.fc40.x86_64 144/153 Verifying : systemd-libs-254.1-2.fc40.x86_64 145/153 Verifying : tar-2:1.35-2.fc40.x86_64 146/153 Verifying : tzdata-2023c-3.fc40.noarch 147/153 Verifying : unzip-6.0-62.fc39.x86_64 148/153 Verifying : which-2.21-40.fc39.x86_64 149/153 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 150/153 Verifying : xz-5.4.4-1.fc39.x86_64 151/153 Verifying : xz-libs-5.4.4-1.fc39.x86_64 152/153 Verifying : zip-3.0-38.fc39.x86_64 153/153 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.x86_64 authselect-1.4.2-3.fc39.x86_64 authselect-libs-1.4.2-3.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.x86_64 binutils-2.41-5.fc40.x86_64 binutils-gold-2.41-5.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc40.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.x86_64 elfutils-debuginfod-client-0.189-6.fc40.x86_64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.x86_64 elfutils-libs-0.189-6.fc40.x86_64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc40.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-8.fc40.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-8.fc40.x86_64 glibc-common-2.38.9000-8.fc40.x86_64 glibc-gconv-extra-2.38.9000-8.fc40.x86_64 glibc-minimal-langpack-2.38.9000-8.fc40.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-1.fc40.x86_64 libacl-2.3.1-9.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.3.0-1.fc40.x86_64 libdb-5.3.28-58.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-1.fc39.x86_64 libgomp-13.2.1-1.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.56.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.3-1.rc2.fc39.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.11.5-1.fc40.x86_64 libzstd-1.5.5-4.fc40.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc40.x86_64 p11-kit-0.25.0-2.fc39.x86_64 p11-kit-trust-0.25.0-2.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.x86_64 pam-libs-1.5.3-2.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.x86_64 rpm-build-4.18.99-1.fc40.x86_64 rpm-build-libs-4.18.99-1.fc40.x86_64 rpm-libs-4.18.99-1.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.x86_64 sqlite-libs-3.43.1-1.fc40.x86_64 systemd-libs-254.1-2.fc40.x86_64 tar-2:1.35-2.fc40.x86_64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-38.fc39.x86_64 zlib-ng-compat-2.1.3-3.fc40.x86_64 zstd-1.5.5-4.fc40.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.x86_64 authselect-1.4.2-3.fc39.x86_64 authselect-libs-1.4.2-3.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.x86_64 binutils-2.41-5.fc40.x86_64 binutils-gold-2.41-5.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc40.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.x86_64 elfutils-debuginfod-client-0.189-6.fc40.x86_64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.x86_64 elfutils-libs-0.189-6.fc40.x86_64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-8.fc40.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-8.fc40.x86_64 glibc-common-2.38.9000-8.fc40.x86_64 glibc-gconv-extra-2.38.9000-8.fc40.x86_64 glibc-minimal-langpack-2.38.9000-8.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-1.fc40.x86_64 libacl-2.3.1-9.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.3.0-1.fc40.x86_64 libdb-5.3.28-58.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-1.fc39.x86_64 libgomp-13.2.1-1.fc39.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.56.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc39.x86_64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc39.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.3-1.rc2.fc39.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.11.5-1.fc40.x86_64 libzstd-1.5.5-4.fc40.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.1-4.fc40.x86_64 p11-kit-0.25.0-2.fc39.x86_64 p11-kit-trust-0.25.0-2.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.x86_64 pam-libs-1.5.3-2.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.x86_64 rpm-build-4.18.99-1.fc40.x86_64 rpm-build-libs-4.18.99-1.fc40.x86_64 rpm-libs-4.18.99-1.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.x86_64 sqlite-libs-3.43.1-1.fc40.x86_64 systemd-libs-254.1-2.fc40.x86_64 tar-1.35-2.fc40.x86_64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-38.fc39.x86_64 zlib-ng-compat-2.1.3-3.fc40.x86_64 zstd-1.5.5-4.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1691884800 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-46.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1695051381.914141/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1695051381.914141/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1695051381.914141/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-me336x3j/dolfin/dolfin.spec) Config(child) 0 minutes 45 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-46.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695051381.914141/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695051381.914141/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1695051381.914141/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.99-1.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for dolfin-2019.1.0.post0-46.fc40.src.rpm Start: build setup for dolfin-2019.1.0.post0-46.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1691884800 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-46.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 45 kB/s | 1.5 kB 00:00 Copr repository 27 MB/s | 4.6 MB 00:00 fedora 175 kB/s | 7.0 kB 00:00 Package pkgconf-1.9.5-2.fc39.x86_64 is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: boost-devel x86_64 1.81.0-6.fc40 copr_base 12 M chrpath x86_64 0.16-21.fc39 fedora 30 k cmake x86_64 3.27.4-8.fc40 fedora 8.0 M eigen3-devel noarch 3.4.0-12.fc39 fedora 1.2 M flexiblas-devel x86_64 3.3.1-5.fc39 fedora 117 k gcc-c++ x86_64 13.2.1-1.fc39 fedora 13 M gnupg2 x86_64 2.4.3-2.fc40 copr_base 2.6 M hdf5-devel x86_64 1.12.1-12.fc39 fedora 1.3 M make x86_64 1:4.4.1-2.fc39 fedora 589 k petsc-devel x86_64 3.19.4-9.fc40 fedora 2.4 M pybind11-devel x86_64 2.11.1-1.fc39 fedora 176 k python3-devel x86_64 3.12.0~rc2-1.fc40 fedora 311 k python3-dijitso noarch 2019.1.0-15.fc39 fedora 88 k python3-ffc noarch 2019.1.0.post0-17.fc39 fedora 705 k python3-numpy x86_64 1:1.24.4-2.fc39 fedora 7.8 M python3-setuptools noarch 67.7.2-7.fc40 fedora 1.5 M python3-ufl noarch 2019.1.0-17.fc39 fedora 530 k scotch-devel x86_64 7.0.4-1.fc40 copr_base 25 k sundials-devel x86_64 6.5.1-5.fc40 fedora 888 k zlib-ng-compat-devel x86_64 2.1.3-3.fc40 copr_base 34 k Installing dependencies: Lmod x86_64 8.7.32-1.fc40 fedora 261 k SuperLU x86_64 6.0.0-1.fc39 fedora 186 k SuperLUMT-common noarch 3.1.0-36.fc39 fedora 642 k SuperLUMT64-double x86_64 3.1.0-36.fc39 fedora 82 k annobin-docs noarch 12.26-1.fc40 fedora 94 k annobin-plugin-gcc x86_64 12.26-1.fc40 fedora 958 k boost x86_64 1.81.0-6.fc40 copr_base 15 k boost-atomic x86_64 1.81.0-6.fc40 copr_base 21 k boost-chrono x86_64 1.81.0-6.fc40 copr_base 27 k boost-container x86_64 1.81.0-6.fc40 copr_base 41 k boost-context x86_64 1.81.0-6.fc40 copr_base 18 k boost-contract x86_64 1.81.0-6.fc40 copr_base 47 k boost-coroutine x86_64 1.81.0-6.fc40 copr_base 21 k boost-date-time x86_64 1.81.0-6.fc40 copr_base 17 k boost-fiber x86_64 1.81.0-6.fc40 copr_base 43 k boost-filesystem x86_64 1.81.0-6.fc40 copr_base 68 k boost-graph x86_64 1.81.0-6.fc40 copr_base 153 k boost-iostreams x86_64 1.81.0-6.fc40 copr_base 43 k boost-json x86_64 1.81.0-6.fc40 copr_base 111 k boost-locale x86_64 1.81.0-6.fc40 copr_base 222 k boost-log x86_64 1.81.0-6.fc40 copr_base 494 k boost-math x86_64 1.81.0-6.fc40 copr_base 219 k boost-nowide x86_64 1.81.0-6.fc40 copr_base 22 k boost-numpy3 x86_64 1.81.0-6.fc40 copr_base 31 k boost-program-options x86_64 1.81.0-6.fc40 copr_base 110 k boost-python3 x86_64 1.81.0-6.fc40 copr_base 98 k boost-random x86_64 1.81.0-6.fc40 copr_base 25 k boost-regex x86_64 1.81.0-6.fc40 copr_base 112 k boost-serialization x86_64 1.81.0-6.fc40 copr_base 136 k boost-stacktrace x86_64 1.81.0-6.fc40 copr_base 31 k boost-system x86_64 1.81.0-6.fc40 copr_base 17 k boost-test x86_64 1.81.0-6.fc40 copr_base 241 k boost-thread x86_64 1.81.0-6.fc40 copr_base 60 k boost-timer x86_64 1.81.0-6.fc40 copr_base 25 k boost-type_erasure x86_64 1.81.0-6.fc40 copr_base 34 k boost-wave x86_64 1.81.0-6.fc40 copr_base 226 k cmake-data noarch 3.27.4-8.fc40 fedora 2.2 M cmake-filesystem x86_64 3.27.4-8.fc40 fedora 19 k cmake-rpm-macros noarch 3.27.4-8.fc40 fedora 18 k cpp x86_64 13.2.1-1.fc39 fedora 11 M emacs-filesystem noarch 1:29.1-1.fc39 fedora 8.4 k expat x86_64 2.5.0-3.fc39 fedora 110 k flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-netlib64 x86_64 3.3.1-5.fc39 fedora 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-5.fc39 fedora 17 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-1.fc39 fedora 34 M gcc-gfortran x86_64 13.2.1-1.fc39 fedora 12 M gcc-plugin-annobin x86_64 13.2.1-1.fc39 fedora 47 k glibc-devel x86_64 2.38.9000-8.fc40 copr_base 84 k glibc-headers-x86 noarch 2.38.9000-8.fc40 copr_base 497 k gnutls x86_64 3.8.1-1.fc40 fedora 1.1 M groff-base x86_64 1.23.0-2.fc39 fedora 1.1 M guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M hdf5 x86_64 1.12.1-12.fc39 fedora 2.2 M hwloc-libs x86_64 2.9.0-7.fc39 fedora 2.2 M json-c x86_64 0.17-1.fc40 fedora 43 k jsoncpp x86_64 1.9.5-5.fc39 fedora 99 k kernel-headers x86_64 6.6.0-0.rc1.git0.1.fc40 fedora 1.6 M libX11 x86_64 1.8.6-3.fc40 fedora 650 k libX11-common noarch 1.8.6-3.fc40 fedora 175 k libXau x86_64 1.0.11-4.fc40 fedora 31 k libaec x86_64 1.0.6-5.fc39 fedora 42 k libaec-devel x86_64 1.0.6-5.fc39 fedora 12 k libassuan x86_64 2.5.6-2.fc39 fedora 67 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libfabric x86_64 1.19.0-1.fc40 fedora 1.6 M libgcrypt x86_64 1.10.2-2.fc39 fedora 507 k libgfortran x86_64 13.2.1-1.fc39 fedora 903 k libgpg-error x86_64 1.47-2.fc39 fedora 230 k libibverbs x86_64 46.0-4.fc39 fedora 431 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libksba x86_64 1.6.4-2.fc39 fedora 159 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libnl3 x86_64 3.8.0-1.fc40 fedora 348 k libpsm2 x86_64 11.2.230-2.fc39 fedora 200 k libquadmath x86_64 13.2.1-1.fc39 fedora 194 k libquadmath-devel x86_64 13.2.1-1.fc39 fedora 36 k librdmacm x86_64 46.0-4.fc39 fedora 72 k libstdc++-devel x86_64 13.2.1-1.fc39 fedora 2.6 M libtool-ltdl x86_64 2.4.7-8.fc40 fedora 36 k libuv x86_64 1:1.46.0-2.fc39 fedora 159 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-filesystem x86_64 1.8.0-9.fc39 fedora 34 k lua-json noarch 1.3.4-4.fc39 fedora 30 k lua-lpeg x86_64 1.0.2-11.fc39 fedora 67 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k lua-term x86_64 0.07-18.fc39 fedora 15 k metis x86_64 5.1.0.3-2.fc39 fedora 572 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k mpi4py-common noarch 3.1.4-5.fc39 fedora 18 k mpich x86_64 4.1.2-5.fc40 fedora 2.1 M ncurses x86_64 6.4-7.20230520.fc40 fedora 415 k nettle x86_64 3.9.1-2.fc39 fedora 425 k npth x86_64 1.6-14.fc39 fedora 25 k numactl-libs x86_64 2.0.16-3.fc39 fedora 30 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M perl-AutoLoader noarch 5.74-500.fc39 fedora 21 k perl-B x86_64 1.88-500.fc39 fedora 177 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Struct noarch 0.68-500.fc39 fedora 22 k perl-Data-Dumper x86_64 2.188-501.fc39 fedora 56 k perl-Digest noarch 1.20-500.fc39 fedora 25 k perl-Digest-MD5 x86_64 2.58-500.fc39 fedora 35 k perl-DynaLoader x86_64 1.54-500.fc39 fedora 26 k perl-Encode x86_64 4:3.19-500.fc39 fedora 1.7 M perl-Errno x86_64 1.37-500.fc39 fedora 15 k perl-Exporter noarch 5.77-500.fc39 fedora 31 k perl-Fcntl x86_64 1.15-500.fc39 fedora 20 k perl-File-Basename noarch 2.86-500.fc39 fedora 17 k perl-File-Path noarch 2.18-500.fc39 fedora 35 k perl-File-Temp noarch 1:0.231.100-500.fc39 fedora 58 k perl-File-stat noarch 1.13-500.fc39 fedora 17 k perl-FileHandle noarch 2.05-500.fc39 fedora 16 k perl-Getopt-Long noarch 1:2.54-500.fc39 fedora 60 k perl-Getopt-Std noarch 1.13-500.fc39 fedora 16 k perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k perl-IO x86_64 1.52-500.fc39 fedora 82 k perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k perl-IO-Socket-SSL noarch 2.083-3.fc39 fedora 225 k perl-IPC-Open3 noarch 1.22-500.fc39 fedora 22 k perl-MIME-Base64 x86_64 3.16-500.fc39 fedora 29 k perl-Mozilla-CA noarch 20230821-1.fc40 fedora 13 k perl-Net-SSLeay x86_64 1.92-10.fc39 fedora 360 k perl-POSIX x86_64 2.13-500.fc39 fedora 97 k perl-PathTools x86_64 3.89-500.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k perl-Scalar-List-Utils x86_64 5:1.63-500.fc39 fedora 72 k perl-SelectSaver noarch 1.02-500.fc39 fedora 12 k perl-Socket x86_64 4:2.037-3.fc39 fedora 55 k perl-Storable x86_64 1:3.32-500.fc39 fedora 99 k perl-Symbol noarch 1.09-500.fc39 fedora 14 k perl-Term-ANSIColor noarch 5.01-501.fc39 fedora 47 k perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k perl-URI noarch 5.21-1.fc40 fedora 125 k perl-base noarch 2.27-500.fc39 fedora 16 k perl-constant noarch 1.33-501.fc39 fedora 22 k perl-if noarch 0.61.000-500.fc39 fedora 14 k perl-interpreter x86_64 4:5.38.0-500.fc39 fedora 72 k perl-libnet noarch 3.15-501.fc39 fedora 129 k perl-libs x86_64 4:5.38.0-500.fc39 fedora 2.3 M perl-locale noarch 1.10-500.fc39 fedora 14 k perl-mro x86_64 1.28-500.fc39 fedora 29 k perl-overload noarch 1.37-500.fc39 fedora 46 k perl-overloading noarch 0.02-500.fc39 fedora 13 k perl-parent noarch 1:0.241-500.fc39 fedora 14 k perl-podlators noarch 1:5.01-500.fc39 fedora 125 k perl-vars noarch 1.05-500.fc39 fedora 13 k petsc x86_64 3.19.4-9.fc40 fedora 6.9 M procps-ng x86_64 4.0.3-5.fc40 fedora 373 k pyproject-rpm-macros noarch 1.9.0-2.fc39 fedora 41 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python-rpm-macros noarch 3.12-4.fc40 fedora 19 k python3 x86_64 3.12.0~rc2-1.fc40 fedora 26 k python3-fiat noarch 2019.1.0-17.fc39 fedora 218 k python3-libs x86_64 3.12.0~rc2-1.fc40 fedora 9.2 M python3-mpi4py-mpich x86_64 3.1.4-5.fc39 fedora 556 k python3-mpich x86_64 4.1.2-5.fc40 fedora 9.4 k python3-mpmath noarch 1.3.0-3.fc39 fedora 1.1 M python3-packaging noarch 23.1-5.fc40 fedora 115 k python3-rpm-generators noarch 14-7.fc39 fedora 30 k python3-rpm-macros noarch 3.12-4.fc40 fedora 14 k python3-sympy x86_64 1.12-2.fc39 fedora 14 M rhash x86_64 1.4.3-3.fc39 fedora 194 k scotch x86_64 7.0.4-1.fc40 copr_base 279 k suitesparse64 x86_64 5.13.0-3.fc39 fedora 1.1 M sundials x86_64 6.5.1-5.fc40 fedora 1.1 M tcl x86_64 1:8.6.13-1.fc40 copr_base 1.1 M tpm2-tss x86_64 4.0.1-4.fc39 fedora 676 k vim-filesystem noarch 2:9.0.1882-1.fc40 fedora 18 k yaksa x86_64 0.2-3.fc37 fedora 6.5 M Transaction Summary ================================================================================ Install 204 Packages Total size: 225 M Total download size: 112 M Installed size: 963 M Downloading Packages: [SKIPPED] glibc-devel-2.38.9000-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.38.9000-8.fc40.noarch.rpm: Already downloaded [SKIPPED] zlib-ng-compat-devel-2.1.3-3.fc40.x86_64.rpm: Already downloaded [SKIPPED] annobin-docs-12.26-1.fc40.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.26-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-3.27.4-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-data-3.27.4-8.fc40.noarch.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.27.4-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] cmake-rpm-macros-3.27.4-8.fc40.noarch.rpm: Already downloaded [SKIPPED] cpp-13.2.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] emacs-filesystem-29.1-1.fc39.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] gc-8.2.2-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-13.2.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-c++-13.2.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.2.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] groff-base-1.23.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] jsoncpp-1.9.5-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] kernel-headers-6.6.0-0.rc1.git0.1.fc40.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] libicu-73.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libicu-devel-73.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libmpc-1.3.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] libstdc++-devel-13.2.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-8.fc40.x86_64.rpm: Already downloaded [SKIPPED] libuv-1.46.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.36-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] make-4.4.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] ncurses-6.4-7.20230520.fc40.x86_64.rpm: Already downloaded [SKIPPED] perl-AutoLoader-5.74-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-B-1.88-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Carp-1.54-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.68-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dumper-2.188-501.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Digest-1.20-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Digest-MD5-2.58-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.54-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Encode-3.19-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Errno-1.37-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Exporter-5.77-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.86-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-File-Path-2.18-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-File-Temp-0.231.100-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-File-stat-1.13-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-FileHandle-2.05-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Long-2.54-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Std-1.13-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.088-3.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-IO-1.52-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-IO-Socket-IP-0.42-1.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-IO-Socket-SSL-2.083-3.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-IPC-Open3-1.22-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-MIME-Base64-3.16-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Mozilla-CA-20230821-1.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Net-SSLeay-1.92-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-POSIX-2.13-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-PathTools-3.89-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Pod-Escapes-1.07-501.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Perldoc-3.28.01-501.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Simple-3.45-4.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Usage-2.03-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Scalar-List-Utils-1.63-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-SelectSaver-1.02-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Socket-2.037-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Storable-3.32-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-Symbol-1.09-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Term-ANSIColor-5.01-501.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Term-Cap-1.18-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Text-ParseWords-3.31-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Time-Local-1.350-3.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-URI-5.21-1.fc40.noarch.rpm: Already downloaded [SKIPPED] perl-base-2.27-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-constant-1.33-501.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-if-0.61.000-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-interpreter-5.38.0-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-libnet-3.15-501.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-libs-5.38.0-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-locale-1.10-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-mro-1.28-500.fc39.x86_64.rpm: Already downloaded [SKIPPED] perl-overload-1.37-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-overloading-0.02-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-parent-0.241-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-podlators-5.01-500.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-vars-1.05-500.fc39.noarch.rpm: Already downloaded [SKIPPED] python-pip-wheel-23.2.1-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-3.12.0~rc2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] python3-libs-3.12.0~rc2-1.fc40.x86_64.rpm: Already downloaded [SKIPPED] rhash-1.4.3-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] vim-filesystem-9.0.1882-1.fc40.noarch.rpm: Already downloaded (94/204): boost-atomic-1.81.0-6.fc40.x86_64.rpm 646 kB/s | 21 kB 00:00 (95/204): boost-chrono-1.81.0-6.fc40.x86_64.rpm 645 kB/s | 27 kB 00:00 (96/204): boost-1.81.0-6.fc40.x86_64.rpm 350 kB/s | 15 kB 00:00 (97/204): boost-container-1.81.0-6.fc40.x86_64. 2.2 MB/s | 41 kB 00:00 (98/204): boost-context-1.81.0-6.fc40.x86_64.rp 1.7 MB/s | 18 kB 00:00 (99/204): boost-contract-1.81.0-6.fc40.x86_64.r 3.1 MB/s | 47 kB 00:00 (100/204): boost-coroutine-1.81.0-6.fc40.x86_64 2.2 MB/s | 21 kB 00:00 (101/204): boost-date-time-1.81.0-6.fc40.x86_64 1.8 MB/s | 17 kB 00:00 (102/204): boost-fiber-1.81.0-6.fc40.x86_64.rpm 1.2 MB/s | 43 kB 00:00 (103/204): boost-filesystem-1.81.0-6.fc40.x86_6 1.9 MB/s | 68 kB 00:00 (104/204): boost-graph-1.81.0-6.fc40.x86_64.rpm 1.5 MB/s | 153 kB 00:00 (105/204): boost-iostreams-1.81.0-6.fc40.x86_64 423 kB/s | 43 kB 00:00 (106/204): boost-devel-1.81.0-6.fc40.x86_64.rpm 62 MB/s | 12 MB 00:00 (107/204): boost-json-1.81.0-6.fc40.x86_64.rpm 2.2 MB/s | 111 kB 00:00 (108/204): boost-locale-1.81.0-6.fc40.x86_64.rp 4.6 MB/s | 222 kB 00:00 (109/204): boost-log-1.81.0-6.fc40.x86_64.rpm 32 MB/s | 494 kB 00:00 (110/204): boost-math-1.81.0-6.fc40.x86_64.rpm 13 MB/s | 219 kB 00:00 (111/204): boost-nowide-1.81.0-6.fc40.x86_64.rp 1.3 MB/s | 22 kB 00:00 (112/204): boost-numpy3-1.81.0-6.fc40.x86_64.rp 3.2 MB/s | 31 kB 00:00 (113/204): boost-program-options-1.81.0-6.fc40. 11 MB/s | 110 kB 00:00 (114/204): 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tcl-8.6.13-1.fc40.x86_64.rpm 40 MB/s | 1.1 MB 00:00 (129/204): SuperLU-6.0.0-1.fc39.x86_64.rpm 1.1 MB/s | 186 kB 00:00 (130/204): Lmod-8.7.32-1.fc40.x86_64.rpm 1.5 MB/s | 261 kB 00:00 (131/204): SuperLUMT64-double-3.1.0-36.fc39.x86 1.8 MB/s | 82 kB 00:00 (132/204): chrpath-0.16-21.fc39.x86_64.rpm 776 kB/s | 30 kB 00:00 (133/204): SuperLUMT-common-3.1.0-36.fc39.noarc 3.0 MB/s | 642 kB 00:00 (134/204): flexiblas-3.3.1-5.fc39.x86_64.rpm 292 kB/s | 33 kB 00:00 (135/204): eigen3-devel-3.4.0-12.fc39.noarch.rp 7.4 MB/s | 1.2 MB 00:00 (136/204): flexiblas-devel-3.3.1-5.fc39.x86_64. 922 kB/s | 117 kB 00:00 (137/204): flexiblas-netlib-3.3.1-5.fc39.x86_64 30 MB/s | 3.1 MB 00:00 (138/204): flexiblas-netlib64-3.3.1-5.fc39.x86_ 25 MB/s | 3.0 MB 00:00 (139/204): flexiblas-openblas-openmp-3.3.1-5.fc 141 kB/s | 17 kB 00:00 (140/204): flexiblas-openblas-openmp64-3.3.1-5. 273 kB/s | 17 kB 00:00 (141/204): gnutls-3.8.1-1.fc40.x86_64.rpm 5.0 MB/s | 1.1 MB 00:00 (142/204): hdf5-1.12.1-12.fc39.x86_64.rpm 8.6 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python3-ufl-2019.1.0-17.fc39.noarch. 452 kB/s | 530 kB 00:01 (201/204): sundials-6.5.1-5.fc40.x86_64.rpm 8.6 MB/s | 1.1 MB 00:00 (202/204): sundials-devel-6.5.1-5.fc40.x86_64.r 5.7 MB/s | 888 kB 00:00 (203/204): tpm2-tss-4.0.1-4.fc39.x86_64.rpm 3.5 MB/s | 676 kB 00:00 (204/204): yaksa-0.2-3.fc37.x86_64.rpm 13 MB/s | 6.5 MB 00:00 -------------------------------------------------------------------------------- Total 18 MB/s | 112 MB 00:06 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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Installing : annobin-plugin-gcc-12.26-1.fc40.x86_64 195/204 Running scriptlet: annobin-plugin-gcc-12.26-1.fc40.x86_64 195/204 Installing : gcc-plugin-annobin-13.2.1-1.fc39.x86_64 196/204 Running scriptlet: gcc-plugin-annobin-13.2.1-1.fc39.x86_64 196/204 Installing : scotch-devel-7.0.4-1.fc40.x86_64 197/204 Installing : pybind11-devel-2.11.1-1.fc39.x86_64 198/204 Installing : gnupg2-2.4.3-2.fc40.x86_64 199/204 Installing : python3-devel-3.12.0~rc2-1.fc40.x86_64 200/204 Installing : python3-setuptools-67.7.2-7.fc40.noarch 201/204 Installing : flexiblas-devel-3.3.1-5.fc39.x86_64 202/204 Installing : eigen3-devel-3.4.0-12.fc39.noarch 203/204 Installing : chrpath-0.16-21.fc39.x86_64 204/204 Running scriptlet: chrpath-0.16-21.fc39.x86_64 204/204 Verifying : boost-1.81.0-6.fc40.x86_64 1/204 Verifying : boost-atomic-1.81.0-6.fc40.x86_64 2/204 Verifying : boost-chrono-1.81.0-6.fc40.x86_64 3/204 Verifying : boost-container-1.81.0-6.fc40.x86_64 4/204 Verifying : boost-context-1.81.0-6.fc40.x86_64 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Verifying : annobin-docs-12.26-1.fc40.noarch 43/204 Verifying : annobin-plugin-gcc-12.26-1.fc40.x86_64 44/204 Verifying : chrpath-0.16-21.fc39.x86_64 45/204 Verifying : cmake-3.27.4-8.fc40.x86_64 46/204 Verifying : cmake-data-3.27.4-8.fc40.noarch 47/204 Verifying : cmake-filesystem-3.27.4-8.fc40.x86_64 48/204 Verifying : cmake-rpm-macros-3.27.4-8.fc40.noarch 49/204 Verifying : cpp-13.2.1-1.fc39.x86_64 50/204 Verifying : eigen3-devel-3.4.0-12.fc39.noarch 51/204 Verifying : emacs-filesystem-1:29.1-1.fc39.noarch 52/204 Verifying : expat-2.5.0-3.fc39.x86_64 53/204 Verifying : flexiblas-3.3.1-5.fc39.x86_64 54/204 Verifying : flexiblas-devel-3.3.1-5.fc39.x86_64 55/204 Verifying : flexiblas-netlib-3.3.1-5.fc39.x86_64 56/204 Verifying : flexiblas-netlib64-3.3.1-5.fc39.x86_64 57/204 Verifying : flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 58/204 Verifying : flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 59/204 Verifying : gc-8.2.2-4.fc39.x86_64 60/204 Verifying : gcc-13.2.1-1.fc39.x86_64 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lua-filesystem-1.8.0-9.fc39.x86_64 101/204 Verifying : lua-json-1.3.4-4.fc39.noarch 102/204 Verifying : lua-lpeg-1.0.2-11.fc39.x86_64 103/204 Verifying : lua-posix-36.2.1-3.fc39.x86_64 104/204 Verifying : lua-term-0.07-18.fc39.x86_64 105/204 Verifying : make-1:4.4.1-2.fc39.x86_64 106/204 Verifying : metis-5.1.0.3-2.fc39.x86_64 107/204 Verifying : mpdecimal-2.5.1-7.fc39.x86_64 108/204 Verifying : mpi4py-common-3.1.4-5.fc39.noarch 109/204 Verifying : mpich-4.1.2-5.fc40.x86_64 110/204 Verifying : ncurses-6.4-7.20230520.fc40.x86_64 111/204 Verifying : nettle-3.9.1-2.fc39.x86_64 112/204 Verifying : npth-1.6-14.fc39.x86_64 113/204 Verifying : numactl-libs-2.0.16-3.fc39.x86_64 114/204 Verifying : openblas-0.3.21-6.fc39.x86_64 115/204 Verifying : openblas-openmp-0.3.21-6.fc39.x86_64 116/204 Verifying : openblas-openmp64-0.3.21-6.fc39.x86_64 117/204 Verifying : perl-AutoLoader-5.74-500.fc39.noarch 118/204 Verifying : perl-B-1.88-500.fc39.x86_64 119/204 Verifying : perl-Carp-1.54-500.fc39.noarch 120/204 Verifying : perl-Class-Struct-0.68-500.fc39.noarch 121/204 Verifying : perl-Data-Dumper-2.188-501.fc39.x86_64 122/204 Verifying : perl-Digest-1.20-500.fc39.noarch 123/204 Verifying : perl-Digest-MD5-2.58-500.fc39.x86_64 124/204 Verifying : perl-DynaLoader-1.54-500.fc39.x86_64 125/204 Verifying : perl-Encode-4:3.19-500.fc39.x86_64 126/204 Verifying : perl-Errno-1.37-500.fc39.x86_64 127/204 Verifying : perl-Exporter-5.77-500.fc39.noarch 128/204 Verifying : perl-Fcntl-1.15-500.fc39.x86_64 129/204 Verifying : perl-File-Basename-2.86-500.fc39.noarch 130/204 Verifying : perl-File-Path-2.18-500.fc39.noarch 131/204 Verifying : perl-File-Temp-1:0.231.100-500.fc39.noarch 132/204 Verifying : perl-File-stat-1.13-500.fc39.noarch 133/204 Verifying : perl-FileHandle-2.05-500.fc39.noarch 134/204 Verifying : perl-Getopt-Long-1:2.54-500.fc39.noarch 135/204 Verifying : perl-Getopt-Std-1.13-500.fc39.noarch 136/204 Verifying : perl-HTTP-Tiny-0.088-3.fc39.noarch 137/204 Verifying : perl-IO-1.52-500.fc39.x86_64 138/204 Verifying : perl-IO-Socket-IP-0.42-1.fc39.noarch 139/204 Verifying : perl-IO-Socket-SSL-2.083-3.fc39.noarch 140/204 Verifying : perl-IPC-Open3-1.22-500.fc39.noarch 141/204 Verifying : perl-MIME-Base64-3.16-500.fc39.x86_64 142/204 Verifying : perl-Mozilla-CA-20230821-1.fc40.noarch 143/204 Verifying : perl-Net-SSLeay-1.92-10.fc39.x86_64 144/204 Verifying : perl-POSIX-2.13-500.fc39.x86_64 145/204 Verifying : perl-PathTools-3.89-500.fc39.x86_64 146/204 Verifying : perl-Pod-Escapes-1:1.07-501.fc40.noarch 147/204 Verifying : perl-Pod-Perldoc-3.28.01-501.fc39.noarch 148/204 Verifying : perl-Pod-Simple-1:3.45-4.fc39.noarch 149/204 Verifying : perl-Pod-Usage-4:2.03-500.fc39.noarch 150/204 Verifying : perl-Scalar-List-Utils-5:1.63-500.fc39.x86_64 151/204 Verifying : perl-SelectSaver-1.02-500.fc39.noarch 152/204 Verifying : perl-Socket-4:2.037-3.fc39.x86_64 153/204 Verifying : perl-Storable-1:3.32-500.fc39.x86_64 154/204 Verifying : perl-Symbol-1.09-500.fc39.noarch 155/204 Verifying : perl-Term-ANSIColor-5.01-501.fc39.noarch 156/204 Verifying : perl-Term-Cap-1.18-500.fc39.noarch 157/204 Verifying : perl-Text-ParseWords-3.31-500.fc39.noarch 158/204 Verifying : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 159/204 Verifying : perl-Time-Local-2:1.350-3.fc39.noarch 160/204 Verifying : perl-URI-5.21-1.fc40.noarch 161/204 Verifying : perl-base-2.27-500.fc39.noarch 162/204 Verifying : perl-constant-1.33-501.fc39.noarch 163/204 Verifying : perl-if-0.61.000-500.fc39.noarch 164/204 Verifying : perl-interpreter-4:5.38.0-500.fc39.x86_64 165/204 Verifying : perl-libnet-3.15-501.fc39.noarch 166/204 Verifying : perl-libs-4:5.38.0-500.fc39.x86_64 167/204 Verifying : perl-locale-1.10-500.fc39.noarch 168/204 Verifying : perl-mro-1.28-500.fc39.x86_64 169/204 Verifying : perl-overload-1.37-500.fc39.noarch 170/204 Verifying : perl-overloading-0.02-500.fc39.noarch 171/204 Verifying : perl-parent-1:0.241-500.fc39.noarch 172/204 Verifying : perl-podlators-1:5.01-500.fc39.noarch 173/204 Verifying : perl-vars-1.05-500.fc39.noarch 174/204 Verifying : petsc-3.19.4-9.fc40.x86_64 175/204 Verifying : petsc-devel-3.19.4-9.fc40.x86_64 176/204 Verifying : procps-ng-4.0.3-5.fc40.x86_64 177/204 Verifying : pybind11-devel-2.11.1-1.fc39.x86_64 178/204 Verifying : pyproject-rpm-macros-1.9.0-2.fc39.noarch 179/204 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 180/204 Verifying : python-rpm-macros-3.12-4.fc40.noarch 181/204 Verifying : python3-3.12.0~rc2-1.fc40.x86_64 182/204 Verifying : python3-devel-3.12.0~rc2-1.fc40.x86_64 183/204 Verifying : python3-dijitso-2019.1.0-15.fc39.noarch 184/204 Verifying : python3-ffc-2019.1.0.post0-17.fc39.noarch 185/204 Verifying : python3-fiat-2019.1.0-17.fc39.noarch 186/204 Verifying : python3-libs-3.12.0~rc2-1.fc40.x86_64 187/204 Verifying : python3-mpi4py-mpich-3.1.4-5.fc39.x86_64 188/204 Verifying : python3-mpich-4.1.2-5.fc40.x86_64 189/204 Verifying : python3-mpmath-1.3.0-3.fc39.noarch 190/204 Verifying : python3-numpy-1:1.24.4-2.fc39.x86_64 191/204 Verifying : python3-packaging-23.1-5.fc40.noarch 192/204 Verifying : python3-rpm-generators-14-7.fc39.noarch 193/204 Verifying : python3-rpm-macros-3.12-4.fc40.noarch 194/204 Verifying : python3-setuptools-67.7.2-7.fc40.noarch 195/204 Verifying : python3-sympy-1.12-2.fc39.x86_64 196/204 Verifying : python3-ufl-2019.1.0-17.fc39.noarch 197/204 Verifying : rhash-1.4.3-3.fc39.x86_64 198/204 Verifying : suitesparse64-5.13.0-3.fc39.x86_64 199/204 Verifying : sundials-6.5.1-5.fc40.x86_64 200/204 Verifying : sundials-devel-6.5.1-5.fc40.x86_64 201/204 Verifying : tpm2-tss-4.0.1-4.fc39.x86_64 202/204 Verifying : vim-filesystem-2:9.0.1882-1.fc40.noarch 203/204 Verifying : yaksa-0.2-3.fc37.x86_64 204/204 Installed: Lmod-8.7.32-1.fc40.x86_64 SuperLU-6.0.0-1.fc39.x86_64 SuperLUMT-common-3.1.0-36.fc39.noarch SuperLUMT64-double-3.1.0-36.fc39.x86_64 annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.x86_64 boost-1.81.0-6.fc40.x86_64 boost-atomic-1.81.0-6.fc40.x86_64 boost-chrono-1.81.0-6.fc40.x86_64 boost-container-1.81.0-6.fc40.x86_64 boost-context-1.81.0-6.fc40.x86_64 boost-contract-1.81.0-6.fc40.x86_64 boost-coroutine-1.81.0-6.fc40.x86_64 boost-date-time-1.81.0-6.fc40.x86_64 boost-devel-1.81.0-6.fc40.x86_64 boost-fiber-1.81.0-6.fc40.x86_64 boost-filesystem-1.81.0-6.fc40.x86_64 boost-graph-1.81.0-6.fc40.x86_64 boost-iostreams-1.81.0-6.fc40.x86_64 boost-json-1.81.0-6.fc40.x86_64 boost-locale-1.81.0-6.fc40.x86_64 boost-log-1.81.0-6.fc40.x86_64 boost-math-1.81.0-6.fc40.x86_64 boost-nowide-1.81.0-6.fc40.x86_64 boost-numpy3-1.81.0-6.fc40.x86_64 boost-program-options-1.81.0-6.fc40.x86_64 boost-python3-1.81.0-6.fc40.x86_64 boost-random-1.81.0-6.fc40.x86_64 boost-regex-1.81.0-6.fc40.x86_64 boost-serialization-1.81.0-6.fc40.x86_64 boost-stacktrace-1.81.0-6.fc40.x86_64 boost-system-1.81.0-6.fc40.x86_64 boost-test-1.81.0-6.fc40.x86_64 boost-thread-1.81.0-6.fc40.x86_64 boost-timer-1.81.0-6.fc40.x86_64 boost-type_erasure-1.81.0-6.fc40.x86_64 boost-wave-1.81.0-6.fc40.x86_64 chrpath-0.16-21.fc39.x86_64 cmake-3.27.4-8.fc40.x86_64 cmake-data-3.27.4-8.fc40.noarch cmake-filesystem-3.27.4-8.fc40.x86_64 cmake-rpm-macros-3.27.4-8.fc40.noarch cpp-13.2.1-1.fc39.x86_64 eigen3-devel-3.4.0-12.fc39.noarch emacs-filesystem-1:29.1-1.fc39.noarch expat-2.5.0-3.fc39.x86_64 flexiblas-3.3.1-5.fc39.x86_64 flexiblas-devel-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-netlib64-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-1.fc39.x86_64 gcc-c++-13.2.1-1.fc39.x86_64 gcc-gfortran-13.2.1-1.fc39.x86_64 gcc-plugin-annobin-13.2.1-1.fc39.x86_64 glibc-devel-2.38.9000-8.fc40.x86_64 glibc-headers-x86-2.38.9000-8.fc40.noarch gnupg2-2.4.3-2.fc40.x86_64 gnutls-3.8.1-1.fc40.x86_64 groff-base-1.23.0-2.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 hdf5-1.12.1-12.fc39.x86_64 hdf5-devel-1.12.1-12.fc39.x86_64 hwloc-libs-2.9.0-7.fc39.x86_64 json-c-0.17-1.fc40.x86_64 jsoncpp-1.9.5-5.fc39.x86_64 kernel-headers-6.6.0-0.rc1.git0.1.fc40.x86_64 libX11-1.8.6-3.fc40.x86_64 libX11-common-1.8.6-3.fc40.noarch libXau-1.0.11-4.fc40.x86_64 libaec-1.0.6-5.fc39.x86_64 libaec-devel-1.0.6-5.fc39.x86_64 libassuan-2.5.6-2.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libfabric-1.19.0-1.fc40.x86_64 libgcrypt-1.10.2-2.fc39.x86_64 libgfortran-13.2.1-1.fc39.x86_64 libgpg-error-1.47-2.fc39.x86_64 libibverbs-46.0-4.fc39.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libksba-1.6.4-2.fc39.x86_64 libmpc-1.3.1-3.fc39.x86_64 libnl3-3.8.0-1.fc40.x86_64 libpsm2-11.2.230-2.fc39.x86_64 libquadmath-13.2.1-1.fc39.x86_64 libquadmath-devel-13.2.1-1.fc39.x86_64 librdmacm-46.0-4.fc39.x86_64 libstdc++-devel-13.2.1-1.fc39.x86_64 libtool-ltdl-2.4.7-8.fc40.x86_64 libuv-1:1.46.0-2.fc39.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-filesystem-1.8.0-9.fc39.x86_64 lua-json-1.3.4-4.fc39.noarch lua-lpeg-1.0.2-11.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 lua-term-0.07-18.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 metis-5.1.0.3-2.fc39.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 mpi4py-common-3.1.4-5.fc39.noarch mpich-4.1.2-5.fc40.x86_64 ncurses-6.4-7.20230520.fc40.x86_64 nettle-3.9.1-2.fc39.x86_64 npth-1.6-14.fc39.x86_64 numactl-libs-2.0.16-3.fc39.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 perl-AutoLoader-5.74-500.fc39.noarch perl-B-1.88-500.fc39.x86_64 perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-500.fc39.noarch perl-Data-Dumper-2.188-501.fc39.x86_64 perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.58-500.fc39.x86_64 perl-DynaLoader-1.54-500.fc39.x86_64 perl-Encode-4:3.19-500.fc39.x86_64 perl-Errno-1.37-500.fc39.x86_64 perl-Exporter-5.77-500.fc39.noarch perl-Fcntl-1.15-500.fc39.x86_64 perl-File-Basename-2.86-500.fc39.noarch perl-File-Path-2.18-500.fc39.noarch perl-File-Temp-1:0.231.100-500.fc39.noarch perl-File-stat-1.13-500.fc39.noarch perl-FileHandle-2.05-500.fc39.noarch perl-Getopt-Long-1:2.54-500.fc39.noarch perl-Getopt-Std-1.13-500.fc39.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-500.fc39.x86_64 perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.083-3.fc39.noarch perl-IPC-Open3-1.22-500.fc39.noarch perl-MIME-Base64-3.16-500.fc39.x86_64 perl-Mozilla-CA-20230821-1.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.x86_64 perl-POSIX-2.13-500.fc39.x86_64 perl-PathTools-3.89-500.fc39.x86_64 perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.x86_64 perl-SelectSaver-1.02-500.fc39.noarch perl-Socket-4:2.037-3.fc39.x86_64 perl-Storable-1:3.32-500.fc39.x86_64 perl-Symbol-1.09-500.fc39.noarch perl-Term-ANSIColor-5.01-501.fc39.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-500.fc39.noarch perl-constant-1.33-501.fc39.noarch perl-if-0.61.000-500.fc39.noarch perl-interpreter-4:5.38.0-500.fc39.x86_64 perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.0-500.fc39.x86_64 perl-locale-1.10-500.fc39.noarch perl-mro-1.28-500.fc39.x86_64 perl-overload-1.37-500.fc39.noarch perl-overloading-0.02-500.fc39.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-vars-1.05-500.fc39.noarch petsc-3.19.4-9.fc40.x86_64 petsc-devel-3.19.4-9.fc40.x86_64 procps-ng-4.0.3-5.fc40.x86_64 pybind11-devel-2.11.1-1.fc39.x86_64 pyproject-rpm-macros-1.9.0-2.fc39.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-4.fc40.noarch python3-3.12.0~rc2-1.fc40.x86_64 python3-devel-3.12.0~rc2-1.fc40.x86_64 python3-dijitso-2019.1.0-15.fc39.noarch python3-ffc-2019.1.0.post0-17.fc39.noarch python3-fiat-2019.1.0-17.fc39.noarch python3-libs-3.12.0~rc2-1.fc40.x86_64 python3-mpi4py-mpich-3.1.4-5.fc39.x86_64 python3-mpich-4.1.2-5.fc40.x86_64 python3-mpmath-1.3.0-3.fc39.noarch python3-numpy-1:1.24.4-2.fc39.x86_64 python3-packaging-23.1-5.fc40.noarch python3-rpm-generators-14-7.fc39.noarch python3-rpm-macros-3.12-4.fc40.noarch python3-setuptools-67.7.2-7.fc40.noarch python3-sympy-1.12-2.fc39.x86_64 python3-ufl-2019.1.0-17.fc39.noarch rhash-1.4.3-3.fc39.x86_64 scotch-7.0.4-1.fc40.x86_64 scotch-devel-7.0.4-1.fc40.x86_64 suitesparse64-5.13.0-3.fc39.x86_64 sundials-6.5.1-5.fc40.x86_64 sundials-devel-6.5.1-5.fc40.x86_64 tcl-1:8.6.13-1.fc40.x86_64 tpm2-tss-4.0.1-4.fc39.x86_64 vim-filesystem-2:9.0.1882-1.fc40.noarch yaksa-0.2-3.fc37.x86_64 zlib-ng-compat-devel-2.1.3-3.fc40.x86_64 Complete! Finish: build setup for dolfin-2019.1.0.post0-46.fc40.src.rpm Start: rpmbuild dolfin-2019.1.0.post0-46.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1691884800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.MNpGXi + umask 022 + cd /builddir/build/BUILD + /usr/lib/rpm/redhat/gpgverify --keyring=/builddir/build/SOURCES/3083BE4C722232E28AD0828CBED06106DD22BAB3.gpg --signature=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz.asc --data=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz gpgv: Signature made Fri Apr 26 07:47:43 2019 UTC gpgv: using RSA key 3083BE4C722232E28AD0828CBED06106DD22BAB3 gpgv: Good signature from "FEniCS Project Steering Council " + cd /builddir/build/BUILD + rm -rf dolfin-2019.1.0.post0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd dolfin-2019.1.0.post0 + rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-pkgconfig-drop-irrelevant-part-from-Libs-and-Cflags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Add-missing-include-for-compatiblity-with-gcc-13.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i -r 's|pybind11==|pybind11>=|' python/setup.py + rm cmake/modules/FindBLAS.cmake + cat + sed -r -i 's/#include \n\0/' dolfin/geometry/IntersectionConstruction.cpp dolfin/mesh/MeshFunction.h + sed -r -i 's|boost/detail/endian.hpp|boost/endian/arithmetic.hpp|' dolfin/io/VTKFile.cpp dolfin/io/VTKWriter.cpp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.g0wEDP + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + mkdir -p build + cd build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON .. -DBLA_VENDOR=FlexiBLAS -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=off -Wno-dev -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) -- Found Boost: /usr/include (found version "1.81.0") found components: timer filesystem program_options iostreams chrono regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12", minimum required is "3") -- Found UFC: /usr/lib/python3.12/site-packages/ffc/backends/ufc (Required is at least version "2019.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Found PETSc: TRUE (found suitable version "3.19.4", minimum required is "3.7") -- Checking for one of the modules 'crayslepc_real;SLEPc' -- SLEPc could not be found. Be sure to set SLEPC_DIR. (missing: SLEPC_FOUND) (Required is at least version "3.7") -- Checking for package 'AMD' -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib64/libflexiblas.so -- UMFPACK could not be found. Be sure to set UMFPACK_DIR. (missing: UMFPACK_INCLUDE_DIRS AMD_LIBRARIES UMFPACK_TEST_RUNS) -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- CHOLMOD could not be found. Be sure to set CHOLMOD_DIR. (missing: CHOLMOD_INCLUDE_DIRS CHOLMOD_TEST_RUNS) -- Found HDF5: /lib64/libhdf5.so (found version "1.12.1") found components: C -- Checking for Trilinos -- Unable to find Trilinos (>= 12.4.0) -- Trilinos could not be found -- Found ZLIB: /lib64/libz.so (found version "1.2.13") -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC). * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information. * DOLFIN_ENABLE_DOCS, Enable generation of documentation. * DOLFIN_ENABLE_MPI, Compile with support for MPI. * DOLFIN_ENABLE_PETSC, Compile with support for PETSc. * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos. * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK. * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD. * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS. * DOLFIN_ENABLE_SUNDIALS, Compile with support for SUNDIALS. * DOLFIN_ENABLE_ZLIB, Compile with support for zlib. * DOLFIN_ENABLE_HDF5, Compile with support for HDF5. -- The following OPTIONAL packages have been found: * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, Enables the PETSc linear algebra backend * BLAS, Basic Linear Algebra Subprograms, * HDF5, Hierarchical Data Format 5 (HDF5), * ZLIB, Compression library, -- The following REQUIRED packages have been found: * Boost, Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PythonInterp (required version >= 3), Interactive high-level object-oriented language, * UFC (required version >= 2019.1), Unified language for form-compilers (part of FFC), * PkgConfig -- The following features have been disabled: * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects. * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage. * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs. * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors. * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * MPI, Message Passing Interface (MPI) Enables DOLFIN to run in parallel with MPI * SLEPc (required version >= 3.7), Scalable Library for Eigenvalue Problem Computations, * UMFPACK, Sparse LU factorization library, * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, -- -- Generating demo source files from reStructuredText -- -------------------------------------------------- /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/Biharmonic.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/built-in-meshes/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P1.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P3.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/Poisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/main.cpp -- -- Generating form files in demo, test and bench directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo, test and bench directories -- ------------------------------------------------------------------- -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done (29.1s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson1D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson1D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson2D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson2D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson3D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson3D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/adapt.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/adaptivesolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/ErrorControl.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/GoalFunctional.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/marking.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/Extrapolation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:30: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from ‘void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from ‘void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o -MF CMakeFiles/dolfin.dir/ale/ALE.cpp.o.d -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/ALE.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -MF CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o.d -o CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/MeshDisplacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -DDOLFIN_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"1e5e8d5476f82af05ab9c93365d99f971e0284d6\" -MD -MT dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o -MF CMakeFiles/dolfin.dir/common/defines.cpp.o.d -o CMakeFiles/dolfin.dir/common/defines.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/defines.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o -MF CMakeFiles/dolfin.dir/common/init.cpp.o.d -o CMakeFiles/dolfin.dir/common/init.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o -MF CMakeFiles/dolfin.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/MPI.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/HarmonicSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -MF CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o.d -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o -MF CMakeFiles/dolfin.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfin.dir/common/Timer.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/Timer.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -MF CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o.d -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/UniqueIdGenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o -MF CMakeFiles/dolfin.dir/common/timing.cpp.o.d -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/timing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o -MF CMakeFiles/dolfin.dir/common/utils.cpp.o.d -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o -MF CMakeFiles/dolfin.dir/common/Variable.cpp.o.d -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/assemble.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/assemble_local.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -MF CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o.d -o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/AssemblerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/Assembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Assembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -MF CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DiscreteOperators.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o -MF CMakeFiles/dolfin.dir/fem/Equation.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Equation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp: In static member function ‘static void dolfin::DofMapBuilder::compute_node_reordering(dolfin::IndexMap&, std::vector&, const std::unordered_map >&, const std::vector&, const std::vector >&, const std::vector&, const std::set&, MPI_Comm)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp:1663:13: warning: unused variable ‘it’ [-Wunused-variable] 1663 | for (auto it : old_to_new_local) | ^~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -MF CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o.d -o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/fem_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -MF CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o.d -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/FiniteElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearTimeDependentProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o -MF CMakeFiles/dolfin.dir/fem/Form.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Form.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp: In member function ‘void dolfin::LinearVariationalProblem::check_forms() const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 114 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: note: use reference type to prevent copying 114 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LocalAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LocalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshForm.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp: In member function ‘void dolfin::NonlinearVariationalProblem::check_forms() const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 156 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: note: use reference type to prevent copying 156 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -MF CMakeFiles/dolfin.dir/fem/PointSource.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PointSource.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG 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'/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -MF CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp: In static member function ‘static std::shared_ptr dolfin::PETScDMCollection::create_transfer_matrix(const dolfin::FunctionSpace&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp:545:15: warning: unused variable ‘mend’ [-Wunused-variable] 545 | std::size_t mend = finemap->ownership_range().second; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/SparsityPatternBuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/SystemAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o -MF CMakeFiles/dolfin.dir/fem/UFC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/UFC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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/usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o -MF CMakeFiles/dolfin.dir/function/assign.cpp.o.d -o CMakeFiles/dolfin.dir/function/assign.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/assign.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o -MF CMakeFiles/dolfin.dir/function/Constant.cpp.o.d -o CMakeFiles/dolfin.dir/function/Constant.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Constant.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o -MF CMakeFiles/dolfin.dir/function/Expression.cpp.o.d -o CMakeFiles/dolfin.dir/function/Expression.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Expression.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionAXPY.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o -MF CMakeFiles/dolfin.dir/function/Function.cpp.o.d -o CMakeFiles/dolfin.dir/function/Function.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Function.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/GenericFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && 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CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshCoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -MF CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o.d -o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/LagrangeInterpolator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG 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-I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshSubSpace.cpp make[2]: Leaving directory 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/usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -MF CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o.d -o CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/SpecialFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/BoxMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/IntervalMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/RectangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/SphericalShellMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitDiscMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitTetrahedronMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitTriangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/BoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/CollisionPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -MF CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp: In static member function ‘static std::vector > dolfin::ConvexTriangulation::_triangulate_1d(const std::vector&, std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp:238:10: warning: variable ‘collinear’ set but not used [-Wunused-but-set-variable] 238 | bool collinear = true; | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function ‘static void dolfin::GeometryDebugging::print(const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 42 | for (const Point p : simplex) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: note: use reference type to prevent copying 42 | for (const Point p : simplex) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function ‘static void dolfin::GeometryDebugging::print(const std::vector&, const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 52 | for (const Point p : simplex_0) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: note: use reference type to prevent copying 52 | for (const Point p : simplex_0) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 57 | for (const Point p : simplex_1) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: note: use reference type to prevent copying 57 | for (const Point p : simplex_1) | ^ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -MF CMakeFiles/dolfin.dir/geometry/intersect.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/intersect.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GenericBoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -MF CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/MeshPointIntersection.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o -MF CMakeFiles/dolfin.dir/geometry/Point.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/Point.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -MF CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/IntersectionConstruction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/predicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/predicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -MF CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/BoostGraphOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp: In static member function ‘static int32_t dolfin::GraphBuilder::compute_nonlocal_dual_graph(MPI_Comm, const boost::multi_array&, const dolfin::CellType&, int64_t, std::vector >&, FacetCellMap&, std::set&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp:364:21: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 364 | const std::int8_t num_vertices_per_cell = cell_type.num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -MF CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/ParMETIS.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -MF CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -MF CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o.d -o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/SCOTCH.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o -MF CMakeFiles/dolfin.dir/io/base64.cpp.o.d -o CMakeFiles/dolfin.dir/io/base64.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/base64.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -MF CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/ZoltanInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -MF CMakeFiles/dolfin.dir/io/GenericFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/GenericFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o -MF CMakeFiles/dolfin.dir/io/File.cpp.o.d -o CMakeFiles/dolfin.dir/io/File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp: In member function ‘void dolfin::File::init(MPI_Comm, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp:150:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp:21: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp:157:63: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | boost::filesystem::extension(boost::filesystem::basename(path)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp:157:35: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 157 | boost::filesystem::extension(boost::filesystem::basename(path)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:28: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:119:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instamake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' ntiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:151:14: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static hid_t dolfin::HDF5Interface::open_file(MPI_Comm, std::string, std::string, bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:96:10: warning: unused variable ‘status’ [-Wunused-variable] 96 | herr_t status = H5Pclose(plist_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::close_file(hid_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:104:10: warning: unused variable ‘status’ [-Wunused-variable] 104 | herr_t status = H5Fclose(hdf5_file_handle); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::flush_file(hid_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:110:10: warning: unused variable ‘status’ [-Wunused-variable] 110 | herr_t status = H5Fflush(hdf5_file_handle, H5F_SCOPE_GLOBAL); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static const std::string dolfin::HDF5Interface::get_attribute_type(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:135:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 135 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::delete_attribute(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:196:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 196 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static const std::vector > dolfin::HDF5Interface::list_attributes(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:234:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 234 | herr_t status = H5Aiterate2(dset_id, H5_INDEX_NAME, H5_ITER_INC, &n, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_attribute(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:250:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 250 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:272:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 272 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_dataset(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:303:10: warning: unused variable ‘status’ [-Wunused-variable] 303 | herr_t status = H5Pclose(lapl_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::add_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:336:14: warning: unused variable ‘status’ [-Wunused-variable] 336 | herr_t status = H5Gclose(group_id_vis); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static int dolfin::HDF5Interface::dataset_rank(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:359:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 359 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static std::vector dolfin::HDF5Interface::get_dataset_shape(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:387:13: warning: unused variable ‘ndims’ [-Wunused-variable] 387 | const int ndims = H5Sget_simple_extent_dims(space, size.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:391:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 391 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static int dolfin::HDF5Interface::num_datasets_in_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:405:10: warning: unused variable ‘status’ [-Wunused-variable] 405 | herr_t status = H5Gget_info_by_name(hdf5_file_handle, group_name.c_str(), | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static std::vector > dolfin::HDF5Interface::dataset_list(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:418:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 418 | herr_t status; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5File.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:50: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::write(const dolfin::Mesh&, std::size_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:446:24: warning: unused variable ‘num_cells’ [-Wunused-variable] 446 | const std::int64_t num_cells | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::write(const dolfin::Function&, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:918:30: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 918 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:23: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::read(dolfin::Function&, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1067:21: warning: unused variable ‘num_global_dofs’ [-Wunused-variable] 1067 | const std::size_t num_global_dofs = vector_shape[0]; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:172:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:257:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:465:33: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1046:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1058:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1640:33: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1820:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:450:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:925:13: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:929:13: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from ‘void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from ‘void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from ‘void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from ‘void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o -MF CMakeFiles/dolfin.dir/io/pugixml.cpp.o.d -o CMakeFiles/dolfin.dir/io/pugixml.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/pugixml.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -MF CMakeFiles/dolfin.dir/io/SVGFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/SVGFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -MF CMakeFiles/dolfin.dir/io/RAWFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/RAWFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/VTKFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/VTKWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DOM.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp: In static member function ‘static void dolfin::X3DOM::add_menu_color_tab(pugi::xml_node&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp:933:18: warning: variable ‘br_node’ set but not used [-Wunused-but-set-variable] 933 | pugi::xml_node br_node = xml_node.append_child("br"); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp: In member function ‘void dolfin::XMLFile::load_xml_doc(pugi::xml_document&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:403:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 403 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:26: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp: In member function ‘void dolfin::XMLFile::save_xml_doc(const pugi::xml_document&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:467:63: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 467 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function ‘static void dolfin::XMLFunctionData::build_global_to_cell_dof(std::vector > >&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:212:23: warning: unused variable ‘D’ [-Wunused-variable] 212 | const std::size_t D = mesh.topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function ‘static void dolfin::XMLFunctionData::build_dof_map(std::vector >&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:291:23: warning: unused variable ‘D’ [-Wunused-variable] 291 | const std::size_t D = mesh.topology().dim(); | ^ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:51: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::write_checkpoint(const dolfin::Function&, std::string, double, Encoding, bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:152:28: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 152 | pugi::xml_parse_result result = _xml_doc->load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:184:20: warning: variable ‘domain_node’ set but not used [-Wunused-but-set-variable] 184 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::write(const dolfin::Function&, double, Encoding)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:417:20: warning: variable ‘domain_node’ set but not used [-Wunused-but-set-variable] 417 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function ‘static void dolfin::XDMFFile::add_function(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Function&, std::string, const dolfin::Mesh&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1268:30: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 1268 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:20: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::read(dolfin::Mesh&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1326:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 1326 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::read_checkpoint(dolfin::Function&, std::string, int64_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1445:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 1445 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function ‘static void dolfin::XDMFFile::build_mesh_quadratic(dolfin::Mesh&, const dolfin::CellType&, int64_t, int64_t, int, int, const pugi::xml_node&, const pugi::xml_node&, const boost::filesystem::path&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1566:13: warning: unused variable ‘num_edges_per_cell’ [-Wunused-variable] 1566 | const int num_edges_per_cell = cell_type.num_entities(1); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:778:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:792:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = double; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:797:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1119:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1127:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' ugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = double; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1137:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:391:16: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1293:16: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long unsigned int; MPI_Comm = int]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1509:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = int; MPI_Comm = int]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1526:36: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = double; MPI_Comm = int]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1541:26: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long int; MPI_Comm = int]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1729:55: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1827:16: required from ‘static void dolfin::XDMFFile::add_topology_data(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Mesh&, int) [with T = long int; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1159:36: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLTable.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -MF CMakeFiles/dolfin.dir/io/xmlutils.cpp.o.d -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/xmlutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLVector.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/Amesos2LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BelosKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XYZFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XYZFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BlockMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BlockVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/CoordinateMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/DefaultFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/GenericLinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/Ifpack2Preconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/GenericMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -MF CMakeFiles/dolfin.dir/la/IndexMap.cpp.o.d -o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/IndexMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/KrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/MueluPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScLinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp: In member function ‘void dolfin::PETScKrylovSolver::monitor(bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:500:77: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use KSPMonitorTrueResidual() (since version 3.15) [-Wdeprecated-declarations] 500 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:7, from /usr/include/petsc/petscts.h:8, from /usr/include/petsc/petsc.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:29: /usr/include/petsc/petscksp.h:480:109: note: declared here 480 | PETSC_DEPRECATED_FUNCTION("Use KSPMonitorTrueResidual() (since version 3.15)") static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScObject.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScOptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SLEPcEigenSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o -MF CMakeFiles/dolfin.dir/la/solve.cpp.o.d -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -MF CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o.d -o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TensorLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function ‘void dolfin::SparsityPattern::insert_full_rows_local(const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:261:21: warning: unused variable ‘ghosted_size0’ [-Wunused-variable] 261 | const std::size_t ghosted_size0 = | ^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function ‘void dolfin::SparsityPattern::apply()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:384:21: warning: unused variable ‘proc_number’ [-Wunused-variable] 384 | const std::size_t proc_number = _mpi_comm.rank(); | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -MF CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o.d -o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TrilinosParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -MF CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o.d -o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/test_nullspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o -MF CMakeFiles/dolfin.dir/log/Event.cpp.o.d -o CMakeFiles/dolfin.dir/log/Event.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -MF CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o.d -o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/VectorSpaceBasis.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o -MF CMakeFiles/dolfin.dir/log/log.cpp.o.d -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/log.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o -MF CMakeFiles/dolfin.dir/log/LogManager.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/LogManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o -MF CMakeFiles/dolfin.dir/log/Logger.cpp.o.d -o CMakeFiles/dolfin.dir/log/Logger.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o -MF CMakeFiles/dolfin.dir/log/LogStream.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/LogStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB 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'/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o -MF CMakeFiles/dolfin.dir/math/basic.cpp.o.d -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/basic.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -MF CMakeFiles/dolfin.dir/math/Lagrange.cpp.o.d -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/Lagrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o -MF CMakeFiles/dolfin.dir/log/Table.cpp.o.d -o CMakeFiles/dolfin.dir/log/Table.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o -MF CMakeFiles/dolfin.dir/math/Legendre.cpp.o.d -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/legendre.hpp:16, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp:24: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Cell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Cell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -MF CMakeFiles/dolfin.dir/mesh/CellType.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/CellType.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/DynamicMeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Edge.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Edge.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Face.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Face.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/DistributedMeshTools.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/FacetCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Facet.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Facet.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/HexahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/IntervalCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/LocalMeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshConnectivity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshDomains.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshEntity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshGeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshHierarchy.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshQuality.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function ‘static dolfin::Mesh dolfin::MeshRenumbering::renumber_by_color(const dolfin::Mesh&, std::vector)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:149:42: warning: variable ‘insert’ set but not used [-Wunused-but-set-variable] 149 | std::pair insert | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function ‘static void dolfin::MeshRenumbering::compute_renumbering(const dolfin::Mesh&, const std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:167:21: warning: unused variable ‘num_cells’ [-Wunused-variable] 167 | const std::size_t num_cells = mesh.num_cells(); | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:204:35: warning: unused variable ‘colors_old’ [-Wunused-variable] 204 | const std::vector& colors_old = mesh_coloring->second.first; | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp: In static member function ‘static int32_t dolfin::MeshPartitioning::distribute_cells(MPI_Comm, const dolfin::LocalMeshData&, const std::vector&, const std::map >&, boost::multi_array&, std::vector&, std::vector&, std::map >&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp:727:21: warning: unused variable ‘num_local_cells’ [-Wunused-variable] 727 | const std::size_t num_local_cells = mesh_data.topology.cell_vertices.size(); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshTopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/PeriodicBoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/PointCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function ‘void dolfin::MultiMesh::_build_quadrature_rules_overlap(std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: warning: loop variable ‘cutting’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: note: use reference type to prevent copying 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function ‘void dolfin::MultiMesh::_build_quadrature_rules_interface(std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: warning: loop variable ‘cut_i’ creates a copy from type ‘const std::pair > >’ [-Wrange-loop-construct] 931 | for (const auto cut_i: cmap) | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: note: use reference type to prevent copying 931 | for (const auto cut_i: cmap) | ^~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: warning: loop variable ‘boundary_cell_index_j’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: note: use reference type to prevent copying 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/QuadrilateralCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/SubMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/SubDomain.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TetrahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TriangleCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TopologyComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -MF CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp: In member function ‘void dolfin::MultiStageScheme::_check_arguments()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 228 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: note: use reference type to prevent copying 228 | for (const auto bc: _bcs) | ^~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 260 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: note: use reference type to prevent copying 260 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/RKSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/PointIntegralSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/NewtonSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp: In member function ‘void dolfin::PETScSNESSolver::set_linear_solver_parameters()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:520:79: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use KSPMonitorTrueResidual() (since version 3.15) [-Wdeprecated-declarations] 520 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:35: /usr/include/petsc/petscksp.h:480:109: note: declared here 480 | PETSC_DEPRECATED_FUNCTION("Use KSPMonitorTrueResidual() (since version 3.15)") static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In constructor ‘dolfin::PETScTAOSolver::PETScTAOSolver(MPI_Comm, std::string, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:99:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use TaoSetHessian() (since version 3.17) [-Wdeprecated-declarations] 99 | ierr = TaoSetHessianRoutine(_tao, _matH.mat(), _matP.mat(), nullptr, nullptr); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsc.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:34, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:31: /usr/include/petsc/petsctao.h:322:100: note: declared here 322 | PETSC_DEPRECATED_FUNCTION("Use TaoSetHessian() (since version 3.17)") static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function ‘void dolfin::PETScTAOSolver::init(dolfin::OptimisationProblem&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:226:29: warning: ‘PetscErrorCode TaoSetInitialVector(Tao, Vec)’ is deprecated: Use TaoSetSolution() (since version 3.17) [-Wdeprecated-declarations] 226 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:289:101: note: declared here 289 | PETSC_DEPRECATED_FUNCTION("Use TaoSetSolution() (since version 3.17)") static inline PetscErrorCode TaoSetInitialVector(Tao t, Vec v) | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:237:43: warning: ‘PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)’ is deprecated: Use TaoSetObjectiveAndGradient() (since version 3.17) [-Wdeprecated-declarations] 237 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, FormFunctionGradient, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:318:113: note: declared here 318 | PETSC_DEPRECATED_FUNCTION("Use TaoSetObjectiveAndGradient() (since version 3.17)") static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t, PetscErrorCode (*f)(Tao, Vec, PetscReal *, Vec, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:239:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use TaoSetHessian() (since version 3.17) [-Wdeprecated-declarations] 239 | ierr = TaoSetHessianRoutine(_tao, nullptr, nullptr, FormHessian, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:322:100: note: declared here 322 | PETSC_DEPRECATED_FUNCTION("Use TaoSetHessian() (since version 3.17)") static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In static member function ‘static PetscErrorCode dolfin::PETScTAOSolver::FormHessian(Tao, Vec, Mat, Mat, void*)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:391:47: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use TaoSetHessian() (since version 3.17) [-Wdeprecated-declarations] 391 | PetscErrorCode ierr = TaoSetHessianRoutine(tao, nullptr, H, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 392 | nullptr, nullptr); | ~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:322:100: note: declared here 322 | PETSC_DEPRECATED_FUNCTION("Use TaoSetHessian() (since version 3.17)") static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function ‘void dolfin::PETScTAOSolver::set_ksp_options()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:580:77: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use KSPMonitorTrueResidual() (since version 3.15) [-Wdeprecated-declarations] 580 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31: /usr/include/petsc/petscksp.h:480:109: note: declared here 480 | PETSC_DEPRECATED_FUNCTION("Use KSPMonitorTrueResidual() (since version 3.15)") static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function ‘std::size_t dolfin::TAOLinearBoundSolver::solve(const dolfin::PETScMatrix&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:175:29: warning: ‘PetscErrorCode TaoSetInitialVector(Tao, Vec)’ is deprecated: Use TaoSetSolution() (since version 3.17) [-Wdeprecated-declarations] 175 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsc.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:29: /usr/include/petsc/petsctao.h:289:101: note: declared here 289 | PETSC_DEPRECATED_FUNCTION("Use TaoSetSolution() (since version 3.17)") static inline PetscErrorCode TaoSetInitialVector(Tao t, Vec v) | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:184:43: warning: ‘PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)’ is deprecated: Use TaoSetObjectiveAndGradient() (since version 3.17) [-Wdeprecated-declarations] 184 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 185 | __TAOFormFunctionGradientQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:318:113: note: declared here 318 | PETSC_DEPRECATED_FUNCTION("Use TaoSetObjectiveAndGradient() (since version 3.17)") static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t, PetscErrorCode (*f)(Tao, Vec, PetscReal *, Vec, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:188:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use TaoSetHessian() (since version 3.17) [-Wdeprecated-declarations] 188 | ierr = TaoSetHessianRoutine(_tao, A->mat(), A->mat(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | __TAOFormHessianQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:322:100: note: declared here 322 | PETSC_DEPRECATED_FUNCTION("Use TaoSetHessian() (since version 3.17)") static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function ‘void dolfin::TAOLinearBoundSolver::set_ksp_options()’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:416:86: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use KSPMonitorTrueResidual() (since version 3.15) [-Wdeprecated-declarations] 416 | ierr = KSPMonitorSet(ksp, (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:7, from /usr/include/petsc/petscts.h:8, from /usr/include/petsc/petsc.h:30: /usr/include/petsc/petscksp.h:480:109: note: declared here 480 | PETSC_DEPRECATED_FUNCTION("Use KSPMonitorTrueResidual() (since version 3.15)") static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In static member function ‘static PetscErrorCode dolfin::TAOLinearBoundSolver::__TAOMonitor(Tao, void*)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:54: warning: unknown conversion type character ‘\x09’ in format [-Wformat=] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:59: warning: format ‘%g’ expects argument of type ‘double’, but argument 3 has type ‘PetscInt’ {aka ‘int’} [-Wformat=] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ~^ ~~~ | | | | | PetscInt {aka int} | double | %d /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:41: warning: too many arguments for format [-Wformat-extra-args] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/GlobalParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -MF CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -MF CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/BisectionRefinement1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 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/builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/Parameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -MF CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/LocalMeshCoarsening.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/ParallelRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o -MF CMakeFiles/dolfin.dir/refinement/refine.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/refine.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/refine.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -MF CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/PlazaRefinementND.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o -MF CMakeFiles/dolfin.dir/ts/CVode.cpp.o.d -o CMakeFiles/dolfin.dir/ts/CVode.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ts/CVode.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp: In static member function ‘static void dolfin::RegularCutRefinement::refine_marked(dolfin::Mesh&, const dolfin::Mesh&, const std::vector&, const dolfin::IndexSet&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp:323:19: warning: unused variable ‘twin_marker’ [-Wunused-variable] 323 | const int twin_marker = refinement_markers[bisection_twin]; | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Linking CXX shared library libdolfin.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfin.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now 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CMakeFiles/dolfin.dir/common/init.cpp.o CMakeFiles/dolfin.dir/common/MPI.cpp.o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o CMakeFiles/dolfin.dir/common/Timer.cpp.o CMakeFiles/dolfin.dir/common/timing.cpp.o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o CMakeFiles/dolfin.dir/common/utils.cpp.o CMakeFiles/dolfin.dir/common/Variable.cpp.o CMakeFiles/dolfin.dir/fem/assemble.cpp.o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o CMakeFiles/dolfin.dir/fem/Equation.cpp.o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o CMakeFiles/dolfin.dir/fem/Form.cpp.o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o 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CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o CMakeFiles/dolfin.dir/la/solve.cpp.o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o CMakeFiles/dolfin.dir/log/Event.cpp.o CMakeFiles/dolfin.dir/log/log.cpp.o CMakeFiles/dolfin.dir/log/Logger.cpp.o CMakeFiles/dolfin.dir/log/LogManager.cpp.o CMakeFiles/dolfin.dir/log/LogStream.cpp.o CMakeFiles/dolfin.dir/log/Progress.cpp.o CMakeFiles/dolfin.dir/log/Table.cpp.o CMakeFiles/dolfin.dir/math/basic.cpp.o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o CMakeFiles/dolfin.dir/math/Legendre.cpp.o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o CMakeFiles/dolfin.dir/mesh/Face.cpp.o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o CMakeFiles/dolfin.dir/refinement/refine.cpp.o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o CMakeFiles/dolfin.dir/ts/CVode.cpp.o /usr/lib64/libboost_timer.so /usr/lib64/libboost_filesystem.so /usr/lib64/libboost_program_options.so /usr/lib64/libboost_iostreams.so /lib64/libhdf5.so /lib64/libz.so /usr/lib64/libboost_chrono.so /usr/lib64/libboost_regex.so /usr/lib64/libpetsc.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_symlink_library libdolfin.so.2019.1.0 libdolfin.so.2019.1 libdolfin.so make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 ++ python3 -c 'import ffc; print(ffc.get_include_path())' + ffc_path=/usr/lib/python3.12/site-packages/ffc/backends/ufc ++ pkgconf --cflags eigen3 + eigen_options=-I/usr/include/eigen3 + sed -r -i 's|Cflags:.*|\0 -I/usr/lib/python3.12/site-packages/ffc/backends/ufc -I/usr/include/eigen3|' dolfin.pc + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-convert -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-order -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-plot -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/dolfin.conf -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-version -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/fenics-version -- Installing: 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshEntityIterator.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshFunction.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshGeometry.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/Mesh.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshHierarchy.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshOrdering.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshPartitioning.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshQuality.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshRelation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshRenumbering.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshSmoothing.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshTopology.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshTransformation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MeshValueCollection.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/MultiMesh.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/PeriodicBoundaryComputation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/PointCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/QuadrilateralCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/SubDomain.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/SubMesh.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/mesh/Vertex.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/multistage/RKSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/refine.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/dolfin copying dolfin/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin creating build/lib.linux-x86_64-cpython-312/dolfin/common copying dolfin/common/timer.py -> build/lib.linux-x86_64-cpython-312/dolfin/common copying dolfin/common/plotting.py -> build/lib.linux-x86_64-cpython-312/dolfin/common copying dolfin/common/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/common creating build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/specialfunctions.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/multimeshfunctionspace.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/multimeshfunction.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/jit.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/functionspace.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/function.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/expression.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/constant.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/argument.py -> build/lib.linux-x86_64-cpython-312/dolfin/function copying dolfin/function/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/function creating build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/solving.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/solvers.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/projection.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/problem.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/norms.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/multimeshdirichletbc.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/interpolation.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/formmanipulations.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/form.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/errorcontrolgenerator.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/dirichletbc.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/assembling.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/adaptivesolving.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem copying dolfin/fem/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/fem creating build/lib.linux-x86_64-cpython-312/dolfin/la copying dolfin/la/solver.py -> build/lib.linux-x86_64-cpython-312/dolfin/la copying dolfin/la/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/la creating build/lib.linux-x86_64-cpython-312/dolfin/io copying dolfin/io/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/io creating build/lib.linux-x86_64-cpython-312/dolfin/jit copying dolfin/jit/pybind11jit.py -> build/lib.linux-x86_64-cpython-312/dolfin/jit copying dolfin/jit/jit.py -> build/lib.linux-x86_64-cpython-312/dolfin/jit copying dolfin/jit/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/jit creating build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/ufl_util.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/svgtools.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/subdomain.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/meshvaluecollection.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/meshfunction.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/ale.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh copying dolfin/mesh/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/mesh creating build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/rushlarsenschemes.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/multistagesolvers.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/multistagescheme.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/factorize.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage copying dolfin/multistage/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/multistage creating build/lib.linux-x86_64-cpython-312/dolfin/parameter copying dolfin/parameter/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin/parameter creating build/lib.linux-x86_64-cpython-312/dolfin_utils creating build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/xml_writer.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/meshconvert.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/abaqus.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert creating build/lib.linux-x86_64-cpython-312/dolfin_utils/test copying dolfin_utils/test/skips.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/test copying dolfin_utils/test/paths.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/test copying dolfin_utils/test/fixtures.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/test copying dolfin_utils/test/__init__.py -> build/lib.linux-x86_64-cpython-312/dolfin_utils/test creating build/lib.linux-x86_64-cpython-312/fenics copying fenics/__init__.py -> build/lib.linux-x86_64-cpython-312/fenics running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:188 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:21 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12", minimum required is "3.6") -- Found PythonLibs: /usr/lib64/libpython3.12.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.11.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Checking for package 'PETSc4Py' -- PETSc4py could not be found. Be sure to set PYTHONPATH appropriately. (missing: PETSC4PY_INCLUDE_DIRS PETSC4PY_VERSION) Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'mpi4py' jfa: mpi4py not found -- Could NOT find MPI4PY (missing: MPI4PY_INCLUDE_DIR) -- Configuring done (1.4s) -- Generating done (0.0s) -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 Change Dir: '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j1 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0/python -B/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312 /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' [ 4%] Building CXX object CMakeFiles/cpp.dir/src/dolfin.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/dolfin.cpp.o -MF CMakeFiles/cpp.dir/src/dolfin.cpp.o.d -o CMakeFiles/cpp.dir/src/dolfin.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/dolfin.cpp [ 9%] Building CXX object CMakeFiles/cpp.dir/src/parameter.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/parameter.cpp.o -MF CMakeFiles/cpp.dir/src/parameter.cpp.o.d -o CMakeFiles/cpp.dir/src/parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/parameter.cpp [ 14%] Building CXX object CMakeFiles/cpp.dir/src/adaptivity.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/adaptivity.cpp.o -MF CMakeFiles/cpp.dir/src/adaptivity.cpp.o.d -o CMakeFiles/cpp.dir/src/adaptivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/adaptivity.cpp [ 19%] Building CXX object CMakeFiles/cpp.dir/src/ale.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/ale.cpp.o -MF CMakeFiles/cpp.dir/src/ale.cpp.o.d -o CMakeFiles/cpp.dir/src/ale.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/ale.cpp [ 23%] Building CXX object CMakeFiles/cpp.dir/src/common.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/common.cpp.o -MF CMakeFiles/cpp.dir/src/common.cpp.o.d -o CMakeFiles/cpp.dir/src/common.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/common.cpp [ 28%] Building CXX object CMakeFiles/cpp.dir/src/fem.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/fem.cpp.o -MF CMakeFiles/cpp.dir/src/fem.cpp.o.d -o CMakeFiles/cpp.dir/src/fem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/fem.cpp [ 33%] Building CXX object CMakeFiles/cpp.dir/src/function.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/function.cpp.o -MF CMakeFiles/cpp.dir/src/function.cpp.o.d -o CMakeFiles/cpp.dir/src/function.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/function.cpp [ 38%] Building CXX object CMakeFiles/cpp.dir/src/generation.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/generation.cpp.o -MF CMakeFiles/cpp.dir/src/generation.cpp.o.d -o CMakeFiles/cpp.dir/src/generation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/generation.cpp [ 42%] Building CXX object CMakeFiles/cpp.dir/src/geometry.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/geometry.cpp.o -MF CMakeFiles/cpp.dir/src/geometry.cpp.o.d -o CMakeFiles/cpp.dir/src/geometry.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/geometry.cpp [ 47%] Building CXX object CMakeFiles/cpp.dir/src/graph.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/graph.cpp.o -MF CMakeFiles/cpp.dir/src/graph.cpp.o.d -o CMakeFiles/cpp.dir/src/graph.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/graph.cpp [ 52%] Building CXX object CMakeFiles/cpp.dir/src/log.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/log.cpp.o -MF CMakeFiles/cpp.dir/src/log.cpp.o.d -o CMakeFiles/cpp.dir/src/log.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/log.cpp [ 57%] Building CXX object CMakeFiles/cpp.dir/src/math.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/math.cpp.o -MF CMakeFiles/cpp.dir/src/math.cpp.o.d -o CMakeFiles/cpp.dir/src/math.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/math.cpp [ 61%] Building CXX object CMakeFiles/cpp.dir/src/mesh.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/mesh.cpp.o -MF CMakeFiles/cpp.dir/src/mesh.cpp.o.d -o CMakeFiles/cpp.dir/src/mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:27: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = bool; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1613:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:429:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1613:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:430:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = double; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1613:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:431:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = long unsigned int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:206:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1613:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:432:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] [ 66%] Building CXX object CMakeFiles/cpp.dir/src/multistage.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/multistage.cpp.o -MF CMakeFiles/cpp.dir/src/multistage.cpp.o.d -o CMakeFiles/cpp.dir/src/multistage.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/multistage.cpp [ 71%] Building CXX object CMakeFiles/cpp.dir/src/ts.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/ts.cpp.o -MF CMakeFiles/cpp.dir/src/ts.cpp.o.d -o CMakeFiles/cpp.dir/src/ts.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/ts.cpp [ 76%] Building CXX object CMakeFiles/cpp.dir/src/io.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/io.cpp.o -MF CMakeFiles/cpp.dir/src/io.cpp.o.d -o CMakeFiles/cpp.dir/src/io.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/io.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/io.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ [ 80%] Building CXX object CMakeFiles/cpp.dir/src/la.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/la.cpp.o -MF CMakeFiles/cpp.dir/src/la.cpp.o.d -o CMakeFiles/cpp.dir/src/la.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/la.cpp [ 85%] Building CXX object CMakeFiles/cpp.dir/src/nls.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/nls.cpp.o -MF CMakeFiles/cpp.dir/src/nls.cpp.o.d -o CMakeFiles/cpp.dir/src/nls.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/nls.cpp [ 90%] Building CXX object CMakeFiles/cpp.dir/src/refinement.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/refinement.cpp.o -MF CMakeFiles/cpp.dir/src/refinement.cpp.o.d -o CMakeFiles/cpp.dir/src/refinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/refinement.cpp [ 95%] Building CXX object CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.12 -isystem /usr/lib/python3.12/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -MF CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o.d -o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/MPICommWrapper.cpp [100%] Linking CXX shared library /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-312/dolfin/cpp.cpython-312-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,cpp.cpython-312-x86_64-linux-gnu.so -o /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-312/dolfin/cpp.cpython-312-x86_64-linux-gnu.so CMakeFiles/cpp.dir/src/dolfin.cpp.o CMakeFiles/cpp.dir/src/parameter.cpp.o CMakeFiles/cpp.dir/src/adaptivity.cpp.o CMakeFiles/cpp.dir/src/ale.cpp.o CMakeFiles/cpp.dir/src/common.cpp.o CMakeFiles/cpp.dir/src/fem.cpp.o CMakeFiles/cpp.dir/src/function.cpp.o CMakeFiles/cpp.dir/src/generation.cpp.o CMakeFiles/cpp.dir/src/geometry.cpp.o CMakeFiles/cpp.dir/src/graph.cpp.o CMakeFiles/cpp.dir/src/log.cpp.o CMakeFiles/cpp.dir/src/math.cpp.o CMakeFiles/cpp.dir/src/mesh.cpp.o CMakeFiles/cpp.dir/src/multistage.cpp.o CMakeFiles/cpp.dir/src/ts.cpp.o CMakeFiles/cpp.dir/src/io.cpp.o CMakeFiles/cpp.dir/src/la.cpp.o CMakeFiles/cpp.dir/src/nls.cpp.o CMakeFiles/cpp.dir/src/refinement.cpp.o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -Wl,-rpath,/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64 /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/libdolfin.so.2019.1.0 /usr/lib64/libboost_timer.so /usr/lib64/libboost_chrono.so /lib64/libhdf5.so /usr/lib64/libpetsc.so /usr/bin/strip /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-312/dolfin/cpp.cpython-312-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' [100%] Built target cpp gmake[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-312/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Idcucc + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + cd build + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-convert -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-order -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-plot -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/dolfin.conf -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-version -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/fenics-version -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-get-demos -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.py -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/time-series -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/time-series/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/time-series/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/time-series/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/Poisson.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/sym-dirichlet-bc/cpp/Poisson.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/submesh -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/submesh/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/submesh/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/submesh/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/refinement -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/refinement/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/refinement/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/refinement/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D/cpp/Poisson.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D/cpp/Poisson.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/Poisson.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/cpp/Poisson.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson-disc -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson-disc/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson-disc/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson-disc/cpp/PoissonDisc.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson-disc/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/poisson-disc/cpp/PoissonDisc.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parameters -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parameters/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parameters/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parameters/cpp/parameters.xml -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parameters/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parallel-refinement -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parallel-refinement/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parallel-refinement/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/parallel-refinement/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection/cpp/P1_projection.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection/cpp/P3.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection/cpp/main.cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection/cpp/P3.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection/cpp/P1_projection.ufl -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/multimesh-stokes -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/multimesh-stokes/cpp -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/multimesh-stokes/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/multimesh-stokes/cpp/MultiMeshStokes.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/demo/undocumented/multimesh-stokes/cpp/main.cpp -- 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/multistage/RKSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/refine.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 --prefix /usr running install /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12 creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/fenics copying build/lib.linux-x86_64-cpython-312/fenics/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/fenics creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-312/dolfin_utils/test/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-312/dolfin_utils/test/fixtures.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-312/dolfin_utils/test/paths.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-312/dolfin_utils/test/skips.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert/abaqus.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert/meshconvert.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-312/dolfin_utils/meshconvert/xml_writer.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin copying build/lib.linux-x86_64-cpython-312/dolfin/cpp.cpython-312-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/parameter copying build/lib.linux-x86_64-cpython-312/dolfin/parameter/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/parameter creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/factorize.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/multistagescheme.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/multistagesolvers.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-312/dolfin/multistage/rushlarsenschemes.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/ale.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/meshfunction.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/meshvaluecollection.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/subdomain.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/svgtools.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-312/dolfin/mesh/ufl_util.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-312/dolfin/jit/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-312/dolfin/jit/jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-312/dolfin/jit/pybind11jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/io copying build/lib.linux-x86_64-cpython-312/dolfin/io/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/io creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la copying build/lib.linux-x86_64-cpython-312/dolfin/la/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la copying build/lib.linux-x86_64-cpython-312/dolfin/la/solver.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/adaptivesolving.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/assembling.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/dirichletbc.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/errorcontrolgenerator.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/form.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/formmanipulations.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/interpolation.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/multimeshdirichletbc.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/norms.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/problem.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/projection.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/solvers.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-312/dolfin/fem/solving.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/argument.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/constant.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/expression.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/function.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/functionspace.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/multimeshfunction.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/multimeshfunctionspace.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-312/dolfin/function/specialfunctions.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-312/dolfin/common/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-312/dolfin/common/plotting.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-312/dolfin/common/timer.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-312/dolfin/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/fenics/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test/fixtures.py to fixtures.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test/paths.py to paths.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/test/skips.py to skips.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/abaqus.py to abaqus.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py to meshconvert.cpython-312.pyc /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/xml_writer.py to xml_writer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/parameter/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/factorize.py to factorize.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/multistagescheme.py to multistagescheme.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/multistagesolvers.py to multistagesolvers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/multistage/rushlarsenschemes.py to rushlarsenschemes.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/ale.py to ale.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/meshfunction.py to meshfunction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/meshvaluecollection.py to meshvaluecollection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/subdomain.py to subdomain.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/svgtools.py to svgtools.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/mesh/ufl_util.py to ufl_util.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit/jit.py to jit.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/jit/pybind11jit.py to pybind11jit.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/io/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/la/solver.py to solver.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/adaptivesolving.py to adaptivesolving.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/assembling.py to assembling.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/dirichletbc.py to dirichletbc.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/errorcontrolgenerator.py to errorcontrolgenerator.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/form.py to form.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/formmanipulations.py to formmanipulations.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/interpolation.py to interpolation.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/multimeshdirichletbc.py to multimeshdirichletbc.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/norms.py to norms.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/problem.py to problem.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/projection.py to projection.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/solvers.py to solvers.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/fem/solving.py to solving.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/argument.py to argument.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/constant.py to constant.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/expression.py to expression.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/function.py to function.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/functionspace.py to functionspace.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/jit.py to jit.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/multimeshfunction.py to multimeshfunction.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/multimeshfunctionspace.py to multimeshfunctionspace.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/function/specialfunctions.py to specialfunctions.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common/__init__.py to __init__.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common/plotting.py to plotting.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/common/timer.py to timer.cpython-312.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/__init__.py to __init__.cpython-312.pyc writing byte-compilation script '/tmp/tmpf3k0q74u.py' /usr/bin/python3 /tmp/tmpf3k0q74u.py /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' removing /tmp/tmpf3k0q74u.py running install_egg_info running egg_info creating fenics_dolfin.egg-info writing fenics_dolfin.egg-info/PKG-INFO writing dependency_links to fenics_dolfin.egg-info/dependency_links.txt writing requirements to fenics_dolfin.egg-info/requires.txt writing top-level names to fenics_dolfin.egg-info/top_level.txt writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfin.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' Copying fenics_dolfin.egg-info to /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/fenics_dolfin-2019.1.0-py3.12.egg-info running install_scripts + rm -rfv /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/__pycache__ + sed -r -i '1 {s|#!/usr/bin/env python.*|#!/usr/bin/python3|}' /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-order /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-plot /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/bin/dolfin-convert + rm /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/dolfin/dolfin.conf + chrpath /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/cpp.cpython-312-x86_64-linux-gnu.so /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/cpp.cpython-312-x86_64-linux-gnu.so: RUNPATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64 + chrpath --delete /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/cpp.cpython-312-x86_64-linux-gnu.so + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2019.1.0.post0-46.fc40 --unique-debug-suffix -2019.1.0.post0-46.fc40.x86_64 --unique-debug-src-base dolfin-2019.1.0.post0-46.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/dolfin-2019.1.0.post0 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/dolfin-2019.1.0.post0-46.fc40.x86_64 9132 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12/site-packages/dolfin/cpp.cpython-312-x86_64-linux-gnu.so Found '/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64' in installed files; aborting + : + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/dolfin-get-demos from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/fenics-version from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/dolfin-version from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/lib64/python3.12 using python3.12 /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.12/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.3pOrQc + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + ctest -V -j2 UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0/DartConfiguration.tcl Test project /builddir/build/BUILD/dolfin-2019.1.0.post0 Constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! + RPM_EC=0 ++ jobs -p + exit 0 Processing files: dolfin-2019.1.0.post0-46.fc40.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.1lHMYC + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + DOCDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/doc/dolfin + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/doc/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0/README.rst /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/doc/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.bhDvc9 + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + LICENSEDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/licenses/dolfin + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0/COPYING /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0/COPYING.LESSER /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0/AUTHORS /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64/usr/share/licenses/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Provides: dolfin = 2019.1.0.post0-46.fc40 dolfin(x86-64) = 2019.1.0.post0-46.fc40 libdolfin.so.2019.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash libboost_filesystem.so.1.81.0()(64bit) libboost_iostreams.so.1.81.0()(64bit) libboost_program_options.so.1.81.0()(64bit) libboost_timer.so.1.81.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libpetsc.so.3.19()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: dolfin-devel-2019.1.0.post0-46.fc40.x86_64 Provides: dolfin-devel = 2019.1.0.post0-46.fc40 dolfin-devel(x86-64) = 2019.1.0.post0-46.fc40 pkgconfig(dolfin) = 2019.1.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libdolfin.so.2019.1()(64bit) Processing files: python3-dolfin-2019.1.0.post0-46.fc40.x86_64 Provides: python-dolfin = 2019.1.0.post0-46.fc40 python3-dolfin = 2019.1.0.post0-46.fc40 python3-dolfin(x86-64) = 2019.1.0.post0-46.fc40 python3.12-dolfin = 2019.1.0.post0-46.fc40 python3.12dist(fenics-dolfin) = 2019.1 python3dist(fenics-dolfin) = 2019.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(fenics-dijitso) < 2019.2~~ with python3.12dist(fenics-dijitso) >= 2019.1) (python3.12dist(fenics-ffc) < 2019.2~~ with python3.12dist(fenics-ffc) >= 2019.1) (python3.12dist(fenics-ufl) < 2019.2~~ with python3.12dist(fenics-ufl) >= 2019.1) /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdolfin.so.2019.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 python3.12dist(numpy) python3.12dist(pkgconfig) python3.12dist(pybind11) >= 2.2.4 rtld(GNU_HASH) Obsoletes: python-dolfin < 2019.1.0.post0-46.fc40 Processing files: dolfin-doc-2019.1.0.post0-46.fc40.noarch Provides: dolfin-doc = 2019.1.0.post0-46.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash Processing files: dolfin-debugsource-2019.1.0.post0-46.fc40.x86_64 Provides: dolfin-debugsource = 2019.1.0.post0-46.fc40 dolfin-debugsource(x86-64) = 2019.1.0.post0-46.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: dolfin-debuginfo-2019.1.0.post0-46.fc40.x86_64 Provides: debuginfo(build-id) = 304600aacd48dfce996d09c2617b718f9c6262ef dolfin-debuginfo = 2019.1.0.post0-46.fc40 dolfin-debuginfo(x86-64) = 2019.1.0.post0-46.fc40 libdolfin.so.2019.1.0-2019.1.0.post0-46.fc40.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: dolfin-debugsource(x86-64) = 2019.1.0.post0-46.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 Wrote: /builddir/build/RPMS/dolfin-doc-2019.1.0.post0-46.fc40.noarch.rpm Wrote: /builddir/build/RPMS/dolfin-2019.1.0.post0-46.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debugsource-2019.1.0.post0-46.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/python3-dolfin-2019.1.0.post0-46.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-devel-2019.1.0.post0-46.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debuginfo-2019.1.0.post0-46.fc40.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Sp922n + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-46.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.xnkd3O + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-SPECPARTS + rm -rf dolfin-2019.1.0.post0 dolfin-2019.1.0.post0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild dolfin-2019.1.0.post0-46.fc40.src.rpm Finish: build phase for dolfin-2019.1.0.post0-46.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1695051381.914141/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1695051381.914141/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1695051381.914141/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-46.fc40.src.rpm) Config(child) 12 minutes 4 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "dolfin-debuginfo", "epoch": null, "version": "2019.1.0.post0", "release": "46.fc40", "arch": "x86_64" }, { "name": "dolfin-doc", "epoch": null, "version": "2019.1.0.post0", "release": "46.fc40", "arch": "noarch" }, { "name": "dolfin-devel", "epoch": null, "version": "2019.1.0.post0", "release": "46.fc40", "arch": "x86_64" }, { "name": "dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "46.fc40", "arch": "src" }, { "name": "dolfin-debugsource", "epoch": null, "version": "2019.1.0.post0", "release": "46.fc40", "arch": "x86_64" }, { "name": "dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "46.fc40", "arch": "x86_64" }, { "name": "python3-dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "46.fc40", "arch": "x86_64" } ] } RPMResults finished