Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c10c' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408207-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 0.69
PID: 5558
Logging PID: 5559
Task:
{'appstream': False,
 'background': True,
 'build_id': 6408207,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '2586c48e65d92db308ab7ffa92c1d46524e9837f',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-16',
 'project_dirname': 'zlib-ng-compat-mpb',
 'project_name': 'zlib-ng-compat-mpb',
 'project_owner': 'tuliom',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom',
 'source_json': {},
 'source_type': None,
 'submitter': 'tuliom',
 'tags': [],
 'task_id': '6408207-fedora-rawhide-x86_64',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq /var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq'...

Running: git checkout 2586c48e65d92db308ab7ffa92c1d46524e9837f --

cmd: ['git', 'checkout', '2586c48e65d92db308ab7ffa92c1d46524e9837f', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq
rc: 0
stdout: 
stderr: Note: switching to '2586c48e65d92db308ab7ffa92c1d46524e9837f'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 2586c48 automatic import of mmseq

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  8485k      0 --:--:-- --:--:-- --:--:-- 8479k
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695053388.093408 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq/mmseq.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.1.1
INFO: Mock Version: 5.1.1
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695053388.093408/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695053388.093408/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/9c51538352da1b77ef981d7b9d8c022ddd2b3cf27c94d14e10f3d86439cd490d/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/9c51538352da1b77ef981d7b9d8c022ddd2b3cf27c94d14e10f3d86439cd490d/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 9.6 MB/s | 5.4 MB     00:00    
fedora                                           12 MB/s |  73 MB     00:05    
Last metadata expiration check: 0:00:01 ago on Mon Sep 18 16:09:59 2023.
Package python3-dnf-4.16.2-4.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch       Version               Repository  Size
================================================================================
Installing:
 python3-dnf-plugins-core     noarch     4.4.2-1.fc39          fedora     293 k
Installing dependencies:
 dbus-libs                    x86_64     1:1.14.10-1.fc40      fedora     155 k
 python3-dateutil             noarch     1:2.8.2-10.fc39       fedora     355 k
 python3-dbus                 x86_64     1.3.2-4.fc39          fedora     157 k
 python3-distro               noarch     1.8.0-6.fc39          fedora      49 k
 python3-six                  noarch     1.16.0-12.fc39        fedora      41 k
 python3-systemd              x86_64     235-5.fc39            fedora     107 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 1.1 M
Installed size: 3.5 M
Downloading Packages:
(1/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm      1.3 MB/s | 155 kB     00:00    
(2/7): python3-distro-1.8.0-6.fc39.noarch.rpm   2.4 MB/s |  49 kB     00:00    
(3/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 6.7 MB/s | 293 kB     00:00    
(4/7): python3-six-1.16.0-12.fc39.noarch.rpm    1.9 MB/s |  41 kB     00:00    
(5/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm     732 kB/s | 157 kB     00:00    
(6/7): python3-systemd-235-5.fc39.x86_64.rpm    5.0 MB/s | 107 kB     00:00    
(7/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 1.5 MB/s | 355 kB     00:00    
--------------------------------------------------------------------------------
Total                                           4.2 MB/s | 1.1 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : python3-systemd-235-5.fc39.x86_64                      1/7 
  Installing       : python3-six-1.16.0-12.fc39.noarch                      2/7 
  Installing       : python3-dateutil-1:2.8.2-10.fc39.noarch                3/7 
  Installing       : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Installing       : dbus-libs-1:1.14.10-1.fc40.x86_64                      5/7 
  Installing       : python3-dbus-1.3.2-4.fc39.x86_64                       6/7 
  Installing       : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Verifying        : dbus-libs-1:1.14.10-1.fc40.x86_64                      1/7 
  Verifying        : python3-dateutil-1:2.8.2-10.fc39.noarch                2/7 
  Verifying        : python3-dbus-1.3.2-4.fc39.x86_64                       3/7 
  Verifying        : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Verifying        : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           5/7 
  Verifying        : python3-six-1.16.0-12.fc39.noarch                      6/7 
  Verifying        : python3-systemd-235-5.fc39.x86_64                      7/7 

Installed:
  dbus-libs-1:1.14.10-1.fc40.x86_64                                             
  python3-dateutil-1:2.8.2-10.fc39.noarch                                       
  python3-dbus-1.3.2-4.fc39.x86_64                                              
  python3-distro-1.8.0-6.fc39.noarch                                            
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch                                  
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-systemd-235-5.fc39.x86_64                                             

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1695053388.093408/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  22 MB/s | 5.4 MB     00:00    
fedora                                          6.9 MB/s |  73 MB     00:10    
Last metadata expiration check: 0:00:01 ago on Mon Sep 18 16:10:34 2023.
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                         x86_64 5.2.15-5.fc39              fedora    1.8 M
 bzip2                        x86_64 1.0.8-16.fc39              fedora     52 k
 coreutils                    x86_64 9.4-1.fc40                 fedora    1.1 M
 cpio                         x86_64 2.14-4.fc39                fedora    279 k
 diffutils                    x86_64 3.10-3.fc39                fedora    398 k
 fedora-release-common        noarch 40-0.7                     fedora     18 k
 findutils                    x86_64 1:4.9.0-6.fc40             fedora    492 k
 gawk                         x86_64 5.2.2-2.fc39               fedora    1.1 M
 glibc-minimal-langpack       x86_64 2.38.9000-8.fc40           copr_base  73 k
 grep                         x86_64 3.11-5.fc40                fedora    298 k
 gzip                         x86_64 1.12-6.fc39                fedora    166 k
 info                         x86_64 7.0.3-3.fc39               fedora    182 k
 patch                        x86_64 2.7.6-22.fc39              fedora    125 k
 redhat-rpm-config            noarch 270-1.fc40                 copr_base  74 k
 rpm-build                    x86_64 4.18.99-1.fc40             fedora     78 k
 sed                          x86_64 4.8-14.fc39                fedora    306 k
 shadow-utils                 x86_64 2:4.14.0-1.fc40            fedora    1.3 M
 tar                          x86_64 2:1.35-2.fc40              fedora    864 k
 unzip                        x86_64 6.0-62.fc39                fedora    184 k
 util-linux                   x86_64 2.39.2-1.fc40              copr_base 1.1 M
 which                        x86_64 2.21-40.fc39               fedora     42 k
 xz                           x86_64 5.4.4-1.fc39               fedora    556 k
Installing dependencies:
 alternatives                 x86_64 1.25-1.fc39                fedora     39 k
 ansible-srpm-macros          noarch 1-11.fc39                  fedora     21 k
 audit-libs                   x86_64 3.1.2-4.fc40               fedora    117 k
 authselect                   x86_64 1.4.2-3.fc39               fedora    144 k
 authselect-libs              x86_64 1.4.2-3.fc39               fedora    249 k
 basesystem                   noarch 11-18.fc39                 fedora    7.2 k
 binutils                     x86_64 2.41-5.fc40                fedora    6.3 M
 binutils-gold                x86_64 2.41-5.fc40                fedora    796 k
 bzip2-libs                   x86_64 1.0.8-16.fc39              fedora     41 k
 ca-certificates              noarch 2023.2.60_v7.0.306-3.fc40  fedora    837 k
 coreutils-common             x86_64 9.4-1.fc40                 fedora    2.1 M
 cracklib                     x86_64 2.9.11-2.fc40              copr_base  83 k
 crypto-policies              noarch 20230731-1.git5ed06e0.fc39 fedora     99 k
 curl                         x86_64 8.3.0-1.fc40               copr_base 354 k
 cyrus-sasl-lib               x86_64 2.1.28-11.fc40             copr_base 793 k
 debugedit                    x86_64 5.0-10.fc39                fedora     77 k
 dwz                          x86_64 0.15-3.fc39                fedora    134 k
 ed                           x86_64 1.19-4.fc39                fedora     79 k
 efi-srpm-macros              noarch 5-9.fc39                   fedora     22 k
 elfutils                     x86_64 0.189-6.fc40               copr_base 530 k
 elfutils-debuginfod-client   x86_64 0.189-6.fc40               copr_base  38 k
 elfutils-default-yama-scope  noarch 0.189-6.fc40               copr_base  14 k
 elfutils-libelf              x86_64 0.189-6.fc40               copr_base 195 k
 elfutils-libs                x86_64 0.189-6.fc40               copr_base 259 k
 fedora-gpg-keys              noarch 40-0.1                     fedora    130 k
 fedora-release               noarch 40-0.7                     fedora    8.0 k
 fedora-release-identity-basic
                              noarch 40-0.7                     fedora    8.8 k
 fedora-repos                 noarch 40-0.1                     fedora    9.4 k
 fedora-repos-rawhide         noarch 40-0.1                     fedora    9.0 k
 file                         x86_64 5.45-1.fc40                copr_base  50 k
 file-libs                    x86_64 5.45-1.fc40                copr_base 764 k
 filesystem                   x86_64 3.18-6.fc39                fedora    1.1 M
 fonts-srpm-macros            noarch 1:2.0.5-12.fc39            fedora     26 k
 forge-srpm-macros            noarch 0.1.0-1.fc40               fedora     18 k
 fpc-srpm-macros              noarch 1.3-8.fc39                 fedora    7.4 k
 gdb-minimal                  x86_64 13.2-8.fc40                fedora    4.2 M
 gdbm-libs                    x86_64 1:1.23-4.fc39              fedora     56 k
 ghc-srpm-macros              noarch 1.6.1-2.fc39               fedora    7.8 k
 glibc                        x86_64 2.38.9000-8.fc40           copr_base 2.2 M
 glibc-common                 x86_64 2.38.9000-8.fc40           copr_base 350 k
 glibc-gconv-extra            x86_64 2.38.9000-8.fc40           copr_base 1.6 M
 gmp                          x86_64 1:6.2.1-5.fc39             fedora    313 k
 gnat-srpm-macros             noarch 6-3.fc39                   fedora    8.8 k
 go-srpm-macros               noarch 3.2.0-7.fc40               fedora     27 k
 jansson                      x86_64 2.13.1-7.fc39              fedora     44 k
 kernel-srpm-macros           noarch 1.0-20.fc39                fedora     10 k
 keyutils-libs                x86_64 1.6.1-7.fc39               fedora     31 k
 krb5-libs                    x86_64 1.21.2-1.fc40              fedora    765 k
 libacl                       x86_64 2.3.1-9.fc40               fedora     23 k
 libarchive                   x86_64 3.7.2-1.fc40               copr_base 408 k
 libattr                      x86_64 2.5.1-9.fc40               fedora     18 k
 libblkid                     x86_64 2.39.2-1.fc40              copr_base 116 k
 libbrotli                    x86_64 1.1.0-1.fc40               fedora    336 k
 libcap                       x86_64 2.48-7.fc39                fedora     68 k
 libcap-ng                    x86_64 0.8.3-8.fc40               fedora     32 k
 libcom_err                   x86_64 1.47.0-2.fc39              fedora     26 k
 libcurl                      x86_64 8.3.0-1.fc40               copr_base 344 k
 libdb                        x86_64 5.3.28-58.fc40             copr_base 759 k
 libeconf                     x86_64 0.5.2-1.fc40               fedora     30 k
 libevent                     x86_64 2.1.12-9.fc39              fedora    258 k
 libfdisk                     x86_64 2.39.2-1.fc40              copr_base 162 k
 libffi                       x86_64 3.4.4-4.fc39               fedora     40 k
 libgcc                       x86_64 13.2.1-1.fc39              fedora    109 k
 libgomp                      x86_64 13.2.1-1.fc39              fedora    319 k
 libidn2                      x86_64 2.3.4-3.fc39               fedora    117 k
 libmount                     x86_64 2.39.2-1.fc40              copr_base 155 k
 libnghttp2                   x86_64 1.56.0-1.fc40              copr_base  76 k
 libnsl2                      x86_64 2.0.0-6.fc39               fedora     30 k
 libpkgconf                   x86_64 1.9.5-2.fc39               fedora     38 k
 libpsl                       x86_64 0.21.2-4.fc39              fedora     63 k
 libpwquality                 x86_64 1.4.5-6.fc39               fedora    120 k
 libselinux                   x86_64 3.5-5.fc39                 fedora     87 k
 libsemanage                  x86_64 3.5-4.fc39                 fedora    120 k
 libsepol                     x86_64 3.5-2.fc39                 fedora    324 k
 libsigsegv                   x86_64 2.14-5.fc39                fedora     27 k
 libsmartcols                 x86_64 2.39.2-1.fc40              copr_base  67 k
 libssh                       x86_64 0.10.5-2.fc40              copr_base 211 k
 libssh-config                noarch 0.10.5-2.fc40              copr_base 9.7 k
 libstdc++                    x86_64 13.2.1-1.fc39              fedora    860 k
 libtasn1                     x86_64 4.19.0-3.fc39              fedora     74 k
 libtirpc                     x86_64 1.3.3-1.rc2.fc39           fedora     94 k
 libunistring                 x86_64 1.1-5.fc40                 fedora    543 k
 libutempter                  x86_64 1.2.1-10.fc39              fedora     26 k
 libuuid                      x86_64 2.39.2-1.fc40              copr_base  28 k
 libverto                     x86_64 0.3.2-6.fc39               fedora     20 k
 libxcrypt                    x86_64 4.4.36-2.fc39              fedora    119 k
 libxml2                      x86_64 2.11.5-1.fc40              copr_base 697 k
 libzstd                      x86_64 1.5.5-4.fc40               copr_base 309 k
 lua-libs                     x86_64 5.4.6-3.fc39               fedora    133 k
 lua-srpm-macros              noarch 1-9.fc39                   fedora    8.6 k
 lz4-libs                     x86_64 1.9.4-4.fc39               fedora     67 k
 mpfr                         x86_64 4.2.0-3.fc39               fedora    344 k
 ncurses-base                 noarch 6.4-7.20230520.fc40        fedora     88 k
 ncurses-libs                 x86_64 6.4-7.20230520.fc40        fedora    337 k
 ocaml-srpm-macros            noarch 8-2.fc39                   fedora     14 k
 openblas-srpm-macros         noarch 2-14.fc39                  fedora    7.5 k
 openldap                     x86_64 2.6.6-1.fc39               fedora    255 k
 openssl-libs                 x86_64 1:3.1.1-4.fc40             copr_base 2.2 M
 p11-kit                      x86_64 0.25.0-2.fc39              fedora    486 k
 p11-kit-trust                x86_64 0.25.0-2.fc39              fedora    142 k
 package-notes-srpm-macros    noarch 0.5-9.fc39                 fedora     11 k
 pam                          x86_64 1.5.3-2.fc39               fedora    548 k
 pam-libs                     x86_64 1.5.3-2.fc39               fedora     58 k
 pcre2                        x86_64 10.42-1.fc39.2             fedora    233 k
 pcre2-syntax                 noarch 10.42-1.fc39.2             fedora    143 k
 perl-srpm-macros             noarch 1-51.fc39                  fedora    8.0 k
 pkgconf                      x86_64 1.9.5-2.fc39               fedora     42 k
 pkgconf-m4                   noarch 1.9.5-2.fc39               fedora     14 k
 pkgconf-pkg-config           x86_64 1.9.5-2.fc39               fedora    9.6 k
 popt                         x86_64 1.19-3.fc39                fedora     66 k
 publicsuffix-list-dafsa      noarch 20230812-1.fc40            fedora     57 k
 pyproject-srpm-macros        noarch 1.9.0-2.fc39               fedora     14 k
 python-srpm-macros           noarch 3.12-4.fc40                fedora     25 k
 qt5-srpm-macros              noarch 5.15.10-2.fc39             fedora    8.3 k
 qt6-srpm-macros              noarch 6.5.2-2.fc39               fedora    9.2 k
 readline                     x86_64 8.2-4.fc39                 fedora    213 k
 rpm                          x86_64 4.18.99-1.fc40             fedora    538 k
 rpm-build-libs               x86_64 4.18.99-1.fc40             fedora     96 k
 rpm-libs                     x86_64 4.18.99-1.fc40             fedora    312 k
 rpm-sequoia                  x86_64 1.5.0-1.fc40               fedora    883 k
 rust-srpm-macros             noarch 24-5.fc40                  fedora     12 k
 setup                        noarch 2.14.4-1.fc39              fedora    154 k
 sqlite-libs                  x86_64 3.43.1-1.fc40              fedora    688 k
 systemd-libs                 x86_64 254.1-2.fc40               fedora    688 k
 tzdata                       noarch 2023c-3.fc40               fedora    718 k
 util-linux-core              x86_64 2.39.2-1.fc40              copr_base 479 k
 xxhash-libs                  x86_64 0.8.2-1.fc39               fedora     37 k
 xz-libs                      x86_64 5.4.4-1.fc39               fedora    108 k
 zip                          x86_64 3.0-38.fc39                fedora    266 k
 zlib-ng-compat               x86_64 2.1.3-3.fc40               copr_base  79 k
 zstd                         x86_64 1.5.5-4.fc40               copr_base 482 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  153 Packages

Total download size: 53 M
Installed size: 182 M
Downloading Packages:
(1/153): cracklib-2.9.11-2.fc40.x86_64.rpm      1.6 MB/s |  83 kB     00:00    
(2/153): cyrus-sasl-lib-2.1.28-11.fc40.x86_64.r  12 MB/s | 793 kB     00:00    
(3/153): curl-8.3.0-1.fc40.x86_64.rpm           5.1 MB/s | 354 kB     00:00    
(4/153): elfutils-0.189-6.fc40.x86_64.rpm        17 MB/s | 530 kB     00:00    
(5/153): elfutils-debuginfod-client-0.189-6.fc4 2.7 MB/s |  38 kB     00:00    
(6/153): elfutils-default-yama-scope-0.189-6.fc 1.0 MB/s |  14 kB     00:00    
(7/153): elfutils-libelf-0.189-6.fc40.x86_64.rp  17 MB/s | 195 kB     00:00    
(8/153): file-5.45-1.fc40.x86_64.rpm            3.5 MB/s |  50 kB     00:00    
(9/153): elfutils-libs-0.189-6.fc40.x86_64.rpm   17 MB/s | 259 kB     00:00    
(10/153): file-libs-5.45-1.fc40.x86_64.rpm       43 MB/s | 764 kB     00:00    
(11/153): glibc-common-2.38.9000-8.fc40.x86_64.  15 MB/s | 350 kB     00:00    
(12/153): glibc-gconv-extra-2.38.9000-8.fc40.x8  35 MB/s | 1.6 MB     00:00    
(13/153): glibc-2.38.9000-8.fc40.x86_64.rpm      34 MB/s | 2.2 MB     00:00    
(14/153): glibc-minimal-langpack-2.38.9000-8.fc 1.8 MB/s |  73 kB     00:00    
(15/153): libarchive-3.7.2-1.fc40.x86_64.rpm     29 MB/s | 408 kB     00:00    
(16/153): libblkid-2.39.2-1.fc40.x86_64.rpm     9.0 MB/s | 116 kB     00:00    
(17/153): libcurl-8.3.0-1.fc40.x86_64.rpm        20 MB/s | 344 kB     00:00    
(18/153): libdb-5.3.28-58.fc40.x86_64.rpm        41 MB/s | 759 kB     00:00    
(19/153): libfdisk-2.39.2-1.fc40.x86_64.rpm     8.6 MB/s | 162 kB     00:00    
(20/153): libmount-2.39.2-1.fc40.x86_64.rpm     9.6 MB/s | 155 kB     00:00    
(21/153): libnghttp2-1.56.0-1.fc40.x86_64.rpm   7.9 MB/s |  76 kB     00:00    
(22/153): libsmartcols-2.39.2-1.fc40.x86_64.rpm 7.3 MB/s |  67 kB     00:00    
(23/153): libssh-0.10.5-2.fc40.x86_64.rpm        20 MB/s | 211 kB     00:00    
(24/153): libssh-config-0.10.5-2.fc40.noarch.rp 1.1 MB/s | 9.7 kB     00:00    
(25/153): libuuid-2.39.2-1.fc40.x86_64.rpm      3.2 MB/s |  28 kB     00:00    
(26/153): libxml2-2.11.5-1.fc40.x86_64.rpm       41 MB/s | 697 kB     00:00    
(27/153): openssl-libs-3.1.1-4.fc40.x86_64.rpm   57 MB/s | 2.2 MB     00:00    
(28/153): libzstd-1.5.5-4.fc40.x86_64.rpm       7.6 MB/s | 309 kB     00:00    
(29/153): redhat-rpm-config-270-1.fc40.noarch.r 2.6 MB/s |  74 kB     00:00    
(30/153): util-linux-core-2.39.2-1.fc40.x86_64.  23 MB/s | 479 kB     00:00    
(31/153): zlib-ng-compat-2.1.3-3.fc40.x86_64.rp 3.2 MB/s |  79 kB     00:00    
(32/153): zstd-1.5.5-4.fc40.x86_64.rpm           26 MB/s | 482 kB     00:00    
(33/153): util-linux-2.39.2-1.fc40.x86_64.rpm    27 MB/s | 1.1 MB     00:00    
(34/153): ansible-srpm-macros-1-11.fc39.noarch.  68 kB/s |  21 kB     00:00    
(35/153): alternatives-1.25-1.fc39.x86_64.rpm   113 kB/s |  39 kB     00:00    
(36/153): audit-libs-3.1.2-4.fc40.x86_64.rpm    259 kB/s | 117 kB     00:00    
(37/153): authselect-1.4.2-3.fc39.x86_64.rpm    631 kB/s | 144 kB     00:00    
(38/153): authselect-libs-1.4.2-3.fc39.x86_64.r 829 kB/s | 249 kB     00:00    
(39/153): basesystem-11-18.fc39.noarch.rpm       41 kB/s | 7.2 kB     00:00    
(40/153): bash-5.2.15-5.fc39.x86_64.rpm         6.5 MB/s | 1.8 MB     00:00    
(41/153): bzip2-1.0.8-16.fc39.x86_64.rpm        467 kB/s |  52 kB     00:00    
(42/153): bzip2-libs-1.0.8-16.fc39.x86_64.rpm   534 kB/s |  41 kB     00:00    
(43/153): binutils-2.41-5.fc40.x86_64.rpm        16 MB/s | 6.3 MB     00:00    
(44/153): binutils-gold-2.41-5.fc40.x86_64.rpm  2.0 MB/s | 796 kB     00:00    
(45/153): ca-certificates-2023.2.60_v7.0.306-3. 9.0 MB/s | 837 kB     00:00    
(46/153): coreutils-9.4-1.fc40.x86_64.rpm       6.5 MB/s | 1.1 MB     00:00    
(47/153): coreutils-common-9.4-1.fc40.x86_64.rp 8.5 MB/s | 2.1 MB     00:00    
(48/153): cpio-2.14-4.fc39.x86_64.rpm           1.5 MB/s | 279 kB     00:00    
(49/153): crypto-policies-20230731-1.git5ed06e0 1.1 MB/s |  99 kB     00:00    
(50/153): debugedit-5.0-10.fc39.x86_64.rpm      1.0 MB/s |  77 kB     00:00    
(51/153): diffutils-3.10-3.fc39.x86_64.rpm      4.9 MB/s | 398 kB     00:00    
(52/153): dwz-0.15-3.fc39.x86_64.rpm            1.6 MB/s | 134 kB     00:00    
(53/153): ed-1.19-4.fc39.x86_64.rpm             1.0 MB/s |  79 kB     00:00    
(54/153): efi-srpm-macros-5-9.fc39.noarch.rpm   296 kB/s |  22 kB     00:00    
(55/153): fedora-gpg-keys-40-0.1.noarch.rpm     1.7 MB/s | 130 kB     00:00    
(56/153): fedora-release-40-0.7.noarch.rpm      107 kB/s | 8.0 kB     00:00    
(57/153): fedora-release-common-40-0.7.noarch.r 242 kB/s |  18 kB     00:00    
(58/153): fedora-release-identity-basic-40-0.7. 117 kB/s | 8.8 kB     00:00    
(59/153): fedora-repos-40-0.1.noarch.rpm        125 kB/s | 9.4 kB     00:00    
(60/153): fedora-repos-rawhide-40-0.1.noarch.rp 120 kB/s | 9.0 kB     00:00    
(61/153): filesystem-3.18-6.fc39.x86_64.rpm      11 MB/s | 1.1 MB     00:00    
(62/153): findutils-4.9.0-6.fc40.x86_64.rpm     6.0 MB/s | 492 kB     00:00    
(63/153): fonts-srpm-macros-2.0.5-12.fc39.noarc 351 kB/s |  26 kB     00:00    
(64/153): forge-srpm-macros-0.1.0-1.fc40.noarch 243 kB/s |  18 kB     00:00    
(65/153): fpc-srpm-macros-1.3-8.fc39.noarch.rpm  98 kB/s | 7.4 kB     00:00    
(66/153): gawk-5.2.2-2.fc39.x86_64.rpm           12 MB/s | 1.1 MB     00:00    
(67/153): ghc-srpm-macros-1.6.1-2.fc39.noarch.r  87 kB/s | 7.8 kB     00:00    
(68/153): gdbm-libs-1.23-4.fc39.x86_64.rpm      538 kB/s |  56 kB     00:00    
(69/153): gdb-minimal-13.2-8.fc40.x86_64.rpm     24 MB/s | 4.2 MB     00:00    
(70/153): gmp-6.2.1-5.fc39.x86_64.rpm           3.8 MB/s | 313 kB     00:00    
(71/153): gnat-srpm-macros-6-3.fc39.noarch.rpm  111 kB/s | 8.8 kB     00:00    
(72/153): go-srpm-macros-3.2.0-7.fc40.noarch.rp 361 kB/s |  27 kB     00:00    
(73/153): grep-3.11-5.fc40.x86_64.rpm           3.7 MB/s | 298 kB     00:00    
(74/153): gzip-1.12-6.fc39.x86_64.rpm           2.0 MB/s | 166 kB     00:00    
(75/153): info-7.0.3-3.fc39.x86_64.rpm          2.3 MB/s | 182 kB     00:00    
(76/153): jansson-2.13.1-7.fc39.x86_64.rpm      583 kB/s |  44 kB     00:00    
(77/153): kernel-srpm-macros-1.0-20.fc39.noarch 139 kB/s |  10 kB     00:00    
(78/153): keyutils-libs-1.6.1-7.fc39.x86_64.rpm 412 kB/s |  31 kB     00:00    
(79/153): krb5-libs-1.21.2-1.fc40.x86_64.rpm    8.7 MB/s | 765 kB     00:00    
(80/153): libacl-2.3.1-9.fc40.x86_64.rpm        272 kB/s |  23 kB     00:00    
(81/153): libattr-2.5.1-9.fc40.x86_64.rpm       236 kB/s |  18 kB     00:00    
(82/153): libbrotli-1.1.0-1.fc40.x86_64.rpm     4.1 MB/s | 336 kB     00:00    
(83/153): libcap-2.48-7.fc39.x86_64.rpm         845 kB/s |  68 kB     00:00    
(84/153): libcap-ng-0.8.3-8.fc40.x86_64.rpm     408 kB/s |  32 kB     00:00    
(85/153): libcom_err-1.47.0-2.fc39.x86_64.rpm   345 kB/s |  26 kB     00:00    
(86/153): libeconf-0.5.2-1.fc40.x86_64.rpm      399 kB/s |  30 kB     00:00    
(87/153): libevent-2.1.12-9.fc39.x86_64.rpm     3.2 MB/s | 258 kB     00:00    
(88/153): libffi-3.4.4-4.fc39.x86_64.rpm        525 kB/s |  40 kB     00:00    
(89/153): libgcc-13.2.1-1.fc39.x86_64.rpm       1.4 MB/s | 109 kB     00:00    
(90/153): libgomp-13.2.1-1.fc39.x86_64.rpm      4.0 MB/s | 319 kB     00:00    
(91/153): libidn2-2.3.4-3.fc39.x86_64.rpm       1.5 MB/s | 117 kB     00:00    
(92/153): libnsl2-2.0.0-6.fc39.x86_64.rpm       389 kB/s |  30 kB     00:00    
(93/153): libpkgconf-1.9.5-2.fc39.x86_64.rpm    500 kB/s |  38 kB     00:00    
(94/153): libpsl-0.21.2-4.fc39.x86_64.rpm       826 kB/s |  63 kB     00:00    
(95/153): libpwquality-1.4.5-6.fc39.x86_64.rpm  1.5 MB/s | 120 kB     00:00    
(96/153): libselinux-3.5-5.fc39.x86_64.rpm      1.1 MB/s |  87 kB     00:00    
(97/153): libsemanage-3.5-4.fc39.x86_64.rpm     1.5 MB/s | 120 kB     00:00    
(98/153): libsepol-3.5-2.fc39.x86_64.rpm        4.0 MB/s | 324 kB     00:00    
(99/153): libsigsegv-2.14-5.fc39.x86_64.rpm     354 kB/s |  27 kB     00:00    
(100/153): libstdc++-13.2.1-1.fc39.x86_64.rpm   9.8 MB/s | 860 kB     00:00    
(101/153): libtasn1-4.19.0-3.fc39.x86_64.rpm    897 kB/s |  74 kB     00:00    
(102/153): libtirpc-1.3.3-1.rc2.fc39.x86_64.rpm 1.1 MB/s |  94 kB     00:00    
(103/153): libunistring-1.1-5.fc40.x86_64.rpm   6.4 MB/s | 543 kB     00:00    
(104/153): libutempter-1.2.1-10.fc39.x86_64.rpm 315 kB/s |  26 kB     00:00    
(105/153): libverto-0.3.2-6.fc39.x86_64.rpm     246 kB/s |  20 kB     00:00    
(106/153): libxcrypt-4.4.36-2.fc39.x86_64.rpm   1.5 MB/s | 119 kB     00:00    
(107/153): lua-libs-5.4.6-3.fc39.x86_64.rpm     1.7 MB/s | 133 kB     00:00    
(108/153): lua-srpm-macros-1-9.fc39.noarch.rpm  112 kB/s | 8.6 kB     00:00    
(109/153): lz4-libs-1.9.4-4.fc39.x86_64.rpm     881 kB/s |  67 kB     00:00    
(110/153): mpfr-4.2.0-3.fc39.x86_64.rpm         4.2 MB/s | 344 kB     00:00    
(111/153): ncurses-base-6.4-7.20230520.fc40.noa 1.1 MB/s |  88 kB     00:00    
(112/153): ncurses-libs-6.4-7.20230520.fc40.x86 4.1 MB/s | 337 kB     00:00    
(113/153): ocaml-srpm-macros-8-2.fc39.noarch.rp 180 kB/s |  14 kB     00:00    
(114/153): openblas-srpm-macros-2-14.fc39.noarc 100 kB/s | 7.5 kB     00:00    
(115/153): openldap-2.6.6-1.fc39.x86_64.rpm     3.2 MB/s | 255 kB     00:00    
(116/153): p11-kit-0.25.0-2.fc39.x86_64.rpm     5.6 MB/s | 486 kB     00:00    
(117/153): p11-kit-trust-0.25.0-2.fc39.x86_64.r 1.6 MB/s | 142 kB     00:00    
(118/153): package-notes-srpm-macros-0.5-9.fc39 149 kB/s |  11 kB     00:00    
(119/153): pam-1.5.3-2.fc39.x86_64.rpm          6.4 MB/s | 548 kB     00:00    
(120/153): pam-libs-1.5.3-2.fc39.x86_64.rpm     703 kB/s |  58 kB     00:00    
(121/153): patch-2.7.6-22.fc39.x86_64.rpm       1.6 MB/s | 125 kB     00:00    
(122/153): pcre2-10.42-1.fc39.2.x86_64.rpm      2.9 MB/s | 233 kB     00:00    
(123/153): pcre2-syntax-10.42-1.fc39.2.noarch.r 1.7 MB/s | 143 kB     00:00    
(124/153): perl-srpm-macros-1-51.fc39.noarch.rp 106 kB/s | 8.0 kB     00:00    
(125/153): pkgconf-1.9.5-2.fc39.x86_64.rpm      562 kB/s |  42 kB     00:00    
(126/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm   185 kB/s |  14 kB     00:00    
(127/153): pkgconf-pkg-config-1.9.5-2.fc39.x86_ 128 kB/s | 9.6 kB     00:00    
(128/153): popt-1.19-3.fc39.x86_64.rpm          871 kB/s |  66 kB     00:00    
(129/153): publicsuffix-list-dafsa-20230812-1.f 752 kB/s |  57 kB     00:00    
(130/153): pyproject-srpm-macros-1.9.0-2.fc39.n 187 kB/s |  14 kB     00:00    
(131/153): python-srpm-macros-3.12-4.fc40.noarc 331 kB/s |  25 kB     00:00    
(132/153): qt5-srpm-macros-5.15.10-2.fc39.noarc 111 kB/s | 8.3 kB     00:00    
(133/153): qt6-srpm-macros-6.5.2-2.fc39.noarch. 122 kB/s | 9.2 kB     00:00    
(134/153): readline-8.2-4.fc39.x86_64.rpm       2.6 MB/s | 213 kB     00:00    
[MIRROR] rpm-build-4.18.99-1.fc40.x86_64.rpm: Curl error (55): Failed sending data to the peer for https://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/r/rpm-build-4.18.99-1.fc40.x86_64.rpm []
(135/153): rpm-4.18.99-1.fc40.x86_64.rpm        6.3 MB/s | 538 kB     00:00    
(136/153): rpm-build-libs-4.18.99-1.fc40.x86_64 463 kB/s |  96 kB     00:00    
(137/153): rpm-libs-4.18.99-1.fc40.x86_64.rpm   903 kB/s | 312 kB     00:00    
(138/153): rpm-build-4.18.99-1.fc40.x86_64.rpm  204 kB/s |  78 kB     00:00    
(139/153): rpm-sequoia-1.5.0-1.fc40.x86_64.rpm  3.2 MB/s | 883 kB     00:00    
(140/153): rust-srpm-macros-24-5.fc40.noarch.rp  97 kB/s |  12 kB     00:00    
(141/153): sed-4.8-14.fc39.x86_64.rpm           2.2 MB/s | 306 kB     00:00    
(142/153): setup-2.14.4-1.fc39.noarch.rpm       1.9 MB/s | 154 kB     00:00    
(143/153): shadow-utils-4.14.0-1.fc40.x86_64.rp  10 MB/s | 1.3 MB     00:00    
(144/153): sqlite-libs-3.43.1-1.fc40.x86_64.rpm 4.7 MB/s | 688 kB     00:00    
(145/153): systemd-libs-254.1-2.fc40.x86_64.rpm 6.3 MB/s | 688 kB     00:00    
(146/153): tar-1.35-2.fc40.x86_64.rpm           8.6 MB/s | 864 kB     00:00    
(147/153): tzdata-2023c-3.fc40.noarch.rpm       8.1 MB/s | 718 kB     00:00    
(148/153): unzip-6.0-62.fc39.x86_64.rpm         2.3 MB/s | 184 kB     00:00    
(149/153): which-2.21-40.fc39.x86_64.rpm        554 kB/s |  42 kB     00:00    
(150/153): xxhash-libs-0.8.2-1.fc39.x86_64.rpm  497 kB/s |  37 kB     00:00    
(151/153): xz-5.4.4-1.fc39.x86_64.rpm           6.5 MB/s | 556 kB     00:00    
(152/153): xz-libs-5.4.4-1.fc39.x86_64.rpm      1.4 MB/s | 108 kB     00:00    
(153/153): zip-3.0-38.fc39.x86_64.rpm           3.3 MB/s | 266 kB     00:00    
--------------------------------------------------------------------------------
Total                                            11 MB/s |  53 MB     00:04     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x18B8E74C:
 Userid     : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
 Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-6.fc39.x86_64                          1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.2.1-1.fc39.x86_64                          1/153 
  Running scriptlet: libgcc-13.2.1-1.fc39.x86_64                          1/153 
  Installing       : crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/153 
  Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/153 
  Installing       : tzdata-2023c-3.fc40.noarch                           3/153 
  Installing       : fedora-release-identity-basic-40-0.7.noarch          4/153 
  Installing       : fedora-repos-rawhide-40-0.1.noarch                   5/153 
  Installing       : fedora-gpg-keys-40-0.1.noarch                        6/153 
  Installing       : fedora-repos-40-0.1.noarch                           7/153 
  Installing       : fedora-release-common-40-0.7.noarch                  8/153 
  Installing       : fedora-release-40-0.7.noarch                         9/153 
  Installing       : setup-2.14.4-1.fc39.noarch                          10/153 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.4-1.fc39.noarch                          10/153 
  Installing       : filesystem-3.18-6.fc39.x86_64                       11/153 
  Installing       : basesystem-11-18.fc39.noarch                        12/153 
  Installing       : rust-srpm-macros-24-5.fc40.noarch                   13/153 
  Installing       : qt6-srpm-macros-6.5.2-2.fc39.noarch                 14/153 
  Installing       : qt5-srpm-macros-5.15.10-2.fc39.noarch               15/153 
  Installing       : pyproject-srpm-macros-1.9.0-2.fc39.noarch           16/153 
  Installing       : publicsuffix-list-dafsa-20230812-1.fc40.noarch      17/153 
  Installing       : pkgconf-m4-1.9.5-2.fc39.noarch                      18/153 
  Installing       : perl-srpm-macros-1-51.fc39.noarch                   19/153 
  Installing       : pcre2-syntax-10.42-1.fc39.2.noarch                  20/153 
  Installing       : package-notes-srpm-macros-0.5-9.fc39.noarch         21/153 
  Installing       : openblas-srpm-macros-2-14.fc39.noarch               22/153 
  Installing       : ocaml-srpm-macros-8-2.fc39.noarch                   23/153 
  Installing       : ncurses-base-6.4-7.20230520.fc40.noarch             24/153 
  Installing       : glibc-gconv-extra-2.38.9000-8.fc40.x86_64           25/153 
  Running scriptlet: glibc-gconv-extra-2.38.9000-8.fc40.x86_64           25/153 
  Installing       : glibc-minimal-langpack-2.38.9000-8.fc40.x86_64      26/153 
  Installing       : glibc-common-2.38.9000-8.fc40.x86_64                27/153 
  Running scriptlet: glibc-2.38.9000-8.fc40.x86_64                       28/153 
  Installing       : glibc-2.38.9000-8.fc40.x86_64                       28/153 
  Running scriptlet: glibc-2.38.9000-8.fc40.x86_64                       28/153 
  Installing       : ncurses-libs-6.4-7.20230520.fc40.x86_64             29/153 
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  Verifying        : pyproject-srpm-macros-1.9.0-2.fc39.noarch          130/153 
  Verifying        : python-srpm-macros-3.12-4.fc40.noarch              131/153 
  Verifying        : qt5-srpm-macros-5.15.10-2.fc39.noarch              132/153 
  Verifying        : qt6-srpm-macros-6.5.2-2.fc39.noarch                133/153 
  Verifying        : readline-8.2-4.fc39.x86_64                         134/153 
  Verifying        : rpm-4.18.99-1.fc40.x86_64                          135/153 
  Verifying        : rpm-build-4.18.99-1.fc40.x86_64                    136/153 
  Verifying        : rpm-build-libs-4.18.99-1.fc40.x86_64               137/153 
  Verifying        : rpm-libs-4.18.99-1.fc40.x86_64                     138/153 
  Verifying        : rpm-sequoia-1.5.0-1.fc40.x86_64                    139/153 
  Verifying        : rust-srpm-macros-24-5.fc40.noarch                  140/153 
  Verifying        : sed-4.8-14.fc39.x86_64                             141/153 
  Verifying        : setup-2.14.4-1.fc39.noarch                         142/153 
  Verifying        : shadow-utils-2:4.14.0-1.fc40.x86_64                143/153 
  Verifying        : sqlite-libs-3.43.1-1.fc40.x86_64                   144/153 
  Verifying        : systemd-libs-254.1-2.fc40.x86_64                   145/153 
  Verifying        : tar-2:1.35-2.fc40.x86_64                           146/153 
  Verifying        : tzdata-2023c-3.fc40.noarch                         147/153 
  Verifying        : unzip-6.0-62.fc39.x86_64                           148/153 
  Verifying        : which-2.21-40.fc39.x86_64                          149/153 
  Verifying        : xxhash-libs-0.8.2-1.fc39.x86_64                    150/153 
  Verifying        : xz-5.4.4-1.fc39.x86_64                             151/153 
  Verifying        : xz-libs-5.4.4-1.fc39.x86_64                        152/153 
  Verifying        : zip-3.0-38.fc39.x86_64                             153/153 

Installed:
  alternatives-1.25-1.fc39.x86_64                                               
  ansible-srpm-macros-1-11.fc39.noarch                                          
  audit-libs-3.1.2-4.fc40.x86_64                                                
  authselect-1.4.2-3.fc39.x86_64                                                
  authselect-libs-1.4.2-3.fc39.x86_64                                           
  basesystem-11-18.fc39.noarch                                                  
  bash-5.2.15-5.fc39.x86_64                                                     
  binutils-2.41-5.fc40.x86_64                                                   
  binutils-gold-2.41-5.fc40.x86_64                                              
  bzip2-1.0.8-16.fc39.x86_64                                                    
  bzip2-libs-1.0.8-16.fc39.x86_64                                               
  ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch                              
  coreutils-9.4-1.fc40.x86_64                                                   
  coreutils-common-9.4-1.fc40.x86_64                                            
  cpio-2.14-4.fc39.x86_64                                                       
  cracklib-2.9.11-2.fc40.x86_64                                                 
  crypto-policies-20230731-1.git5ed06e0.fc39.noarch                             
  curl-8.3.0-1.fc40.x86_64                                                      
  cyrus-sasl-lib-2.1.28-11.fc40.x86_64                                          
  debugedit-5.0-10.fc39.x86_64                                                  
  diffutils-3.10-3.fc39.x86_64                                                  
  dwz-0.15-3.fc39.x86_64                                                        
  ed-1.19-4.fc39.x86_64                                                         
  efi-srpm-macros-5-9.fc39.noarch                                               
  elfutils-0.189-6.fc40.x86_64                                                  
  elfutils-debuginfod-client-0.189-6.fc40.x86_64                                
  elfutils-default-yama-scope-0.189-6.fc40.noarch                               
  elfutils-libelf-0.189-6.fc40.x86_64                                           
  elfutils-libs-0.189-6.fc40.x86_64                                             
  fedora-gpg-keys-40-0.1.noarch                                                 
  fedora-release-40-0.7.noarch                                                  
  fedora-release-common-40-0.7.noarch                                           
  fedora-release-identity-basic-40-0.7.noarch                                   
  fedora-repos-40-0.1.noarch                                                    
  fedora-repos-rawhide-40-0.1.noarch                                            
  file-5.45-1.fc40.x86_64                                                       
  file-libs-5.45-1.fc40.x86_64                                                  
  filesystem-3.18-6.fc39.x86_64                                                 
  findutils-1:4.9.0-6.fc40.x86_64                                               
  fonts-srpm-macros-1:2.0.5-12.fc39.noarch                                      
  forge-srpm-macros-0.1.0-1.fc40.noarch                                         
  fpc-srpm-macros-1.3-8.fc39.noarch                                             
  gawk-5.2.2-2.fc39.x86_64                                                      
  gdb-minimal-13.2-8.fc40.x86_64                                                
  gdbm-libs-1:1.23-4.fc39.x86_64                                                
  ghc-srpm-macros-1.6.1-2.fc39.noarch                                           
  glibc-2.38.9000-8.fc40.x86_64                                                 
  glibc-common-2.38.9000-8.fc40.x86_64                                          
  glibc-gconv-extra-2.38.9000-8.fc40.x86_64                                     
  glibc-minimal-langpack-2.38.9000-8.fc40.x86_64                                
  gmp-1:6.2.1-5.fc39.x86_64                                                     
  gnat-srpm-macros-6-3.fc39.noarch                                              
  go-srpm-macros-3.2.0-7.fc40.noarch                                            
  grep-3.11-5.fc40.x86_64                                                       
  gzip-1.12-6.fc39.x86_64                                                       
  info-7.0.3-3.fc39.x86_64                                                      
  jansson-2.13.1-7.fc39.x86_64                                                  
  kernel-srpm-macros-1.0-20.fc39.noarch                                         
  keyutils-libs-1.6.1-7.fc39.x86_64                                             
  krb5-libs-1.21.2-1.fc40.x86_64                                                
  libacl-2.3.1-9.fc40.x86_64                                                    
  libarchive-3.7.2-1.fc40.x86_64                                                
  libattr-2.5.1-9.fc40.x86_64                                                   
  libblkid-2.39.2-1.fc40.x86_64                                                 
  libbrotli-1.1.0-1.fc40.x86_64                                                 
  libcap-2.48-7.fc39.x86_64                                                     
  libcap-ng-0.8.3-8.fc40.x86_64                                                 
  libcom_err-1.47.0-2.fc39.x86_64                                               
  libcurl-8.3.0-1.fc40.x86_64                                                   
  libdb-5.3.28-58.fc40.x86_64                                                   
  libeconf-0.5.2-1.fc40.x86_64                                                  
  libevent-2.1.12-9.fc39.x86_64                                                 
  libfdisk-2.39.2-1.fc40.x86_64                                                 
  libffi-3.4.4-4.fc39.x86_64                                                    
  libgcc-13.2.1-1.fc39.x86_64                                                   
  libgomp-13.2.1-1.fc39.x86_64                                                  
  libidn2-2.3.4-3.fc39.x86_64                                                   
  libmount-2.39.2-1.fc40.x86_64                                                 
  libnghttp2-1.56.0-1.fc40.x86_64                                               
  libnsl2-2.0.0-6.fc39.x86_64                                                   
  libpkgconf-1.9.5-2.fc39.x86_64                                                
  libpsl-0.21.2-4.fc39.x86_64                                                   
  libpwquality-1.4.5-6.fc39.x86_64                                              
  libselinux-3.5-5.fc39.x86_64                                                  
  libsemanage-3.5-4.fc39.x86_64                                                 
  libsepol-3.5-2.fc39.x86_64                                                    
  libsigsegv-2.14-5.fc39.x86_64                                                 
  libsmartcols-2.39.2-1.fc40.x86_64                                             
  libssh-0.10.5-2.fc40.x86_64                                                   
  libssh-config-0.10.5-2.fc40.noarch                                            
  libstdc++-13.2.1-1.fc39.x86_64                                                
  libtasn1-4.19.0-3.fc39.x86_64                                                 
  libtirpc-1.3.3-1.rc2.fc39.x86_64                                              
  libunistring-1.1-5.fc40.x86_64                                                
  libutempter-1.2.1-10.fc39.x86_64                                              
  libuuid-2.39.2-1.fc40.x86_64                                                  
  libverto-0.3.2-6.fc39.x86_64                                                  
  libxcrypt-4.4.36-2.fc39.x86_64                                                
  libxml2-2.11.5-1.fc40.x86_64                                                  
  libzstd-1.5.5-4.fc40.x86_64                                                   
  lua-libs-5.4.6-3.fc39.x86_64                                                  
  lua-srpm-macros-1-9.fc39.noarch                                               
  lz4-libs-1.9.4-4.fc39.x86_64                                                  
  mpfr-4.2.0-3.fc39.x86_64                                                      
  ncurses-base-6.4-7.20230520.fc40.noarch                                       
  ncurses-libs-6.4-7.20230520.fc40.x86_64                                       
  ocaml-srpm-macros-8-2.fc39.noarch                                             
  openblas-srpm-macros-2-14.fc39.noarch                                         
  openldap-2.6.6-1.fc39.x86_64                                                  
  openssl-libs-1:3.1.1-4.fc40.x86_64                                            
  p11-kit-0.25.0-2.fc39.x86_64                                                  
  p11-kit-trust-0.25.0-2.fc39.x86_64                                            
  package-notes-srpm-macros-0.5-9.fc39.noarch                                   
  pam-1.5.3-2.fc39.x86_64                                                       
  pam-libs-1.5.3-2.fc39.x86_64                                                  
  patch-2.7.6-22.fc39.x86_64                                                    
  pcre2-10.42-1.fc39.2.x86_64                                                   
  pcre2-syntax-10.42-1.fc39.2.noarch                                            
  perl-srpm-macros-1-51.fc39.noarch                                             
  pkgconf-1.9.5-2.fc39.x86_64                                                   
  pkgconf-m4-1.9.5-2.fc39.noarch                                                
  pkgconf-pkg-config-1.9.5-2.fc39.x86_64                                        
  popt-1.19-3.fc39.x86_64                                                       
  publicsuffix-list-dafsa-20230812-1.fc40.noarch                                
  pyproject-srpm-macros-1.9.0-2.fc39.noarch                                     
  python-srpm-macros-3.12-4.fc40.noarch                                         
  qt5-srpm-macros-5.15.10-2.fc39.noarch                                         
  qt6-srpm-macros-6.5.2-2.fc39.noarch                                           
  readline-8.2-4.fc39.x86_64                                                    
  redhat-rpm-config-270-1.fc40.noarch                                           
  rpm-4.18.99-1.fc40.x86_64                                                     
  rpm-build-4.18.99-1.fc40.x86_64                                               
  rpm-build-libs-4.18.99-1.fc40.x86_64                                          
  rpm-libs-4.18.99-1.fc40.x86_64                                                
  rpm-sequoia-1.5.0-1.fc40.x86_64                                               
  rust-srpm-macros-24-5.fc40.noarch                                             
  sed-4.8-14.fc39.x86_64                                                        
  setup-2.14.4-1.fc39.noarch                                                    
  shadow-utils-2:4.14.0-1.fc40.x86_64                                           
  sqlite-libs-3.43.1-1.fc40.x86_64                                              
  systemd-libs-254.1-2.fc40.x86_64                                              
  tar-2:1.35-2.fc40.x86_64                                                      
  tzdata-2023c-3.fc40.noarch                                                    
  unzip-6.0-62.fc39.x86_64                                                      
  util-linux-2.39.2-1.fc40.x86_64                                               
  util-linux-core-2.39.2-1.fc40.x86_64                                          
  which-2.21-40.fc39.x86_64                                                     
  xxhash-libs-0.8.2-1.fc39.x86_64                                               
  xz-5.4.4-1.fc39.x86_64                                                        
  xz-libs-5.4.4-1.fc39.x86_64                                                   
  zip-3.0-38.fc39.x86_64                                                        
  zlib-ng-compat-2.1.3-3.fc40.x86_64                                            
  zstd-1.5.5-4.fc40.x86_64                                                      

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.x86_64
authselect-1.4.2-3.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.x86_64
binutils-2.41-5.fc40.x86_64
binutils-gold-2.41-5.fc40.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.x86_64
coreutils-common-9.4-1.fc40.x86_64
cpio-2.14-4.fc39.x86_64
cracklib-2.9.11-2.fc40.x86_64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.x86_64
cyrus-sasl-lib-2.1.28-11.fc40.x86_64
debugedit-5.0-10.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.19-4.fc39.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.x86_64
elfutils-debuginfod-client-0.189-6.fc40.x86_64
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.x86_64
elfutils-libs-0.189-6.fc40.x86_64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.x86_64
file-libs-5.45-1.fc40.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-4.9.0-6.fc40.x86_64
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.x86_64
gdb-minimal-13.2-8.fc40.x86_64
gdbm-libs-1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.x86_64
glibc-common-2.38.9000-8.fc40.x86_64
glibc-gconv-extra-2.38.9000-8.fc40.x86_64
glibc-minimal-langpack-2.38.9000-8.fc40.x86_64
gmp-6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.0.3-3.fc39.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.x86_64
krb5-libs-1.21.2-1.fc40.x86_64
libacl-2.3.1-9.fc40.x86_64
libarchive-3.7.2-1.fc40.x86_64
libattr-2.5.1-9.fc40.x86_64
libblkid-2.39.2-1.fc40.x86_64
libbrotli-1.1.0-1.fc40.x86_64
libcap-2.48-7.fc39.x86_64
libcap-ng-0.8.3-8.fc40.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.3.0-1.fc40.x86_64
libdb-5.3.28-58.fc40.x86_64
libeconf-0.5.2-1.fc40.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.2-1.fc40.x86_64
libffi-3.4.4-4.fc39.x86_64
libgcc-13.2.1-1.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.2-1.fc40.x86_64
libnghttp2-1.56.0-1.fc40.x86_64
libnsl2-2.0.0-6.fc39.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
libpwquality-1.4.5-6.fc39.x86_64
libselinux-3.5-5.fc39.x86_64
libsemanage-3.5-4.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
libsmartcols-2.39.2-1.fc40.x86_64
libssh-0.10.5-2.fc40.x86_64
libssh-config-0.10.5-2.fc40.noarch
libstdc++-13.2.1-1.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.3-1.rc2.fc39.x86_64
libunistring-1.1-5.fc40.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.2-1.fc40.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-2.fc39.x86_64
libxml2-2.11.5-1.fc40.x86_64
libzstd-1.5.5-4.fc40.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-3.1.1-4.fc40.x86_64
p11-kit-0.25.0-2.fc39.x86_64
p11-kit-trust-0.25.0-2.fc39.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.x86_64
pam-libs-1.5.3-2.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-1.fc39.2.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.x86_64
redhat-rpm-config-270-1.fc40.noarch
rpm-4.18.99-1.fc40.x86_64
rpm-build-4.18.99-1.fc40.x86_64
rpm-build-libs-4.18.99-1.fc40.x86_64
rpm-libs-4.18.99-1.fc40.x86_64
rpm-sequoia-1.5.0-1.fc40.x86_64
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.4-1.fc39.noarch
shadow-utils-4.14.0-1.fc40.x86_64
sqlite-libs-3.43.1-1.fc40.x86_64
systemd-libs-254.1-2.fc40.x86_64
tar-1.35-2.fc40.x86_64
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.x86_64
util-linux-2.39.2-1.fc40.x86_64
util-linux-core-2.39.2-1.fc40.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
zip-3.0-38.fc39.x86_64
zlib-ng-compat-2.1.3-3.fc40.x86_64
zstd-1.5.5-4.fc40.x86_64
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1695053388.093408/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1695053388.093408/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1695053388.093408/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-j0f0mljd/mmseq/mmseq.spec) Config(child) 1 minutes 28 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695053388.093408/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695053388.093408/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1695053388.093408/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.18.99-1.fc40.x86_64
  rpm-sequoia-1.5.0-1.fc40.x86_64
  python3-dnf-4.16.2-4.fc40.noarch
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch
  yum-4.16.2-4.fc40.noarch
Start: build phase for mmseq-1.0.11-16.fc40.src.rpm
Start: build setup for mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  38 kB/s | 1.5 kB     00:00    
fedora                                          246 kB/s | 7.0 kB     00:00    
Dependencies resolved.
================================================================================
 Package                      Arch    Version                  Repository  Size
================================================================================
Installing:
 armadillo-devel              x86_64  10.8.2-5.fc39            fedora     2.2 M
 boost-devel                  x86_64  1.81.0-6.fc40            copr_base   12 M
 flexiblas-devel              x86_64  3.3.1-5.fc39             fedora     117 k
 gcc-c++                      x86_64  13.2.1-1.fc39            fedora      13 M
 gsl-devel                    x86_64  2.7.1-5.fc39             fedora     653 k
 htslib-devel                 x86_64  1.15.1-3.fc40            copr_base  100 k
 make                         x86_64  1:4.4.1-2.fc39           fedora     589 k
 perl-generators              noarch  1.16-3.fc39              fedora      16 k
 zlib-ng-compat-devel         x86_64  2.1.3-3.fc40             copr_base   34 k
Installing dependencies:
 SuperLU                      x86_64  6.0.0-1.fc39             fedora     186 k
 SuperLU-devel                x86_64  6.0.0-1.fc39             fedora      27 k
 annobin-docs                 noarch  12.26-1.fc40             fedora      94 k
 annobin-plugin-gcc           x86_64  12.26-1.fc40             fedora     958 k
 armadillo                    x86_64  10.8.2-5.fc39            fedora      34 k
 arpack                       x86_64  3.8.0-7.fc39             fedora     205 k
 arpack-devel                 x86_64  3.8.0-7.fc39             fedora      14 k
 autoconf                     noarch  2.71-7.fc40              fedora     733 k
 automake                     noarch  1.16.5-14.fc40           fedora     697 k
 boost                        x86_64  1.81.0-6.fc40            copr_base   15 k
 boost-atomic                 x86_64  1.81.0-6.fc40            copr_base   21 k
 boost-chrono                 x86_64  1.81.0-6.fc40            copr_base   27 k
 boost-container              x86_64  1.81.0-6.fc40            copr_base   41 k
 boost-context                x86_64  1.81.0-6.fc40            copr_base   18 k
 boost-contract               x86_64  1.81.0-6.fc40            copr_base   47 k
 boost-coroutine              x86_64  1.81.0-6.fc40            copr_base   21 k
 boost-date-time              x86_64  1.81.0-6.fc40            copr_base   17 k
 boost-fiber                  x86_64  1.81.0-6.fc40            copr_base   43 k
 boost-filesystem             x86_64  1.81.0-6.fc40            copr_base   68 k
 boost-graph                  x86_64  1.81.0-6.fc40            copr_base  153 k
 boost-iostreams              x86_64  1.81.0-6.fc40            copr_base   43 k
 boost-json                   x86_64  1.81.0-6.fc40            copr_base  111 k
 boost-locale                 x86_64  1.81.0-6.fc40            copr_base  222 k
 boost-log                    x86_64  1.81.0-6.fc40            copr_base  494 k
 boost-math                   x86_64  1.81.0-6.fc40            copr_base  219 k
 boost-nowide                 x86_64  1.81.0-6.fc40            copr_base   22 k
 boost-numpy3                 x86_64  1.81.0-6.fc40            copr_base   31 k
 boost-program-options        x86_64  1.81.0-6.fc40            copr_base  110 k
 boost-python3                x86_64  1.81.0-6.fc40            copr_base   98 k
 boost-random                 x86_64  1.81.0-6.fc40            copr_base   25 k
 boost-regex                  x86_64  1.81.0-6.fc40            copr_base  112 k
 boost-serialization          x86_64  1.81.0-6.fc40            copr_base  136 k
 boost-stacktrace             x86_64  1.81.0-6.fc40            copr_base   31 k
 boost-system                 x86_64  1.81.0-6.fc40            copr_base   17 k
 boost-test                   x86_64  1.81.0-6.fc40            copr_base  241 k
 boost-thread                 x86_64  1.81.0-6.fc40            copr_base   60 k
 boost-timer                  x86_64  1.81.0-6.fc40            copr_base   25 k
 boost-type_erasure           x86_64  1.81.0-6.fc40            copr_base   34 k
 boost-wave                   x86_64  1.81.0-6.fc40            copr_base  226 k
 cmake-filesystem             x86_64  3.27.4-8.fc40            fedora      19 k
 cpp                          x86_64  13.2.1-1.fc39            fedora      11 M
 emacs-filesystem             noarch  1:29.1-1.fc39            fedora     8.4 k
 expat                        x86_64  2.5.0-3.fc39             fedora     110 k
 flexiblas                    x86_64  3.3.1-5.fc39             fedora      33 k
 flexiblas-netlib             x86_64  3.3.1-5.fc39             fedora     3.1 M
 flexiblas-netlib64           x86_64  3.3.1-5.fc39             fedora     3.0 M
 flexiblas-openblas-openmp    x86_64  3.3.1-5.fc39             fedora      17 k
 flexiblas-openblas-openmp64  x86_64  3.3.1-5.fc39             fedora      17 k
 gc                           x86_64  8.2.2-4.fc39             fedora     110 k
 gcc                          x86_64  13.2.1-1.fc39            fedora      34 M
 gcc-gfortran                 x86_64  13.2.1-1.fc39            fedora      12 M
 gcc-plugin-annobin           x86_64  13.2.1-1.fc39            fedora      47 k
 glibc-devel                  x86_64  2.38.9000-8.fc40         copr_base   84 k
 glibc-headers-x86            noarch  2.38.9000-8.fc40         copr_base  497 k
 groff-base                   x86_64  1.23.0-2.fc39            fedora     1.1 M
 gsl                          x86_64  2.7.1-5.fc39             fedora     1.1 M
 guile22                      x86_64  2.2.7-9.fc39             fedora     6.5 M
 hdf5                         x86_64  1.12.1-12.fc39           fedora     2.2 M
 hdf5-devel                   x86_64  1.12.1-12.fc39           fedora     1.3 M
 htslib                       x86_64  1.15.1-3.fc40            copr_base  490 k
 kernel-headers               x86_64  6.6.0-0.rc1.git0.1.fc40  fedora     1.6 M
 libaec                       x86_64  1.0.6-5.fc39             fedora      42 k
 libaec-devel                 x86_64  1.0.6-5.fc39             fedora      12 k
 libb2                        x86_64  0.98.1-9.fc39            fedora      25 k
 libgfortran                  x86_64  13.2.1-1.fc39            fedora     903 k
 libicu                       x86_64  73.2-2.fc39              fedora      11 M
 libicu-devel                 x86_64  73.2-2.fc39              fedora     924 k
 libmpc                       x86_64  1.3.1-3.fc39             fedora      70 k
 libquadmath                  x86_64  13.2.1-1.fc39            fedora     194 k
 libquadmath-devel            x86_64  13.2.1-1.fc39            fedora      36 k
 libstdc++-devel              x86_64  13.2.1-1.fc39            fedora     2.6 M
 libtool-ltdl                 x86_64  2.4.7-8.fc40             fedora      36 k
 libxcrypt-devel              x86_64  4.4.36-2.fc39            fedora      30 k
 m4                           x86_64  1.4.19-7.fc40            fedora     303 k
 metis                        x86_64  5.1.0.3-2.fc39           fedora     572 k
 mpdecimal                    x86_64  2.5.1-7.fc39             fedora      89 k
 ncurses                      x86_64  6.4-7.20230520.fc40      fedora     415 k
 openblas                     x86_64  0.3.21-6.fc39            fedora      35 k
 openblas-openmp              x86_64  0.3.21-6.fc39            fedora     4.9 M
 openblas-openmp64            x86_64  0.3.21-6.fc39            fedora     4.8 M
 perl-AutoLoader              noarch  5.74-500.fc39            fedora      21 k
 perl-B                       x86_64  1.88-500.fc39            fedora     177 k
 perl-Carp                    noarch  1.54-500.fc39            fedora      29 k
 perl-Class-Struct            noarch  0.68-500.fc39            fedora      22 k
 perl-Data-Dumper             x86_64  2.188-501.fc39           fedora      56 k
 perl-Digest                  noarch  1.20-500.fc39            fedora      25 k
 perl-Digest-MD5              x86_64  2.58-500.fc39            fedora      35 k
 perl-DynaLoader              x86_64  1.54-500.fc39            fedora      26 k
 perl-Encode                  x86_64  4:3.19-500.fc39          fedora     1.7 M
 perl-Errno                   x86_64  1.37-500.fc39            fedora      15 k
 perl-Exporter                noarch  5.77-500.fc39            fedora      31 k
 perl-Fcntl                   x86_64  1.15-500.fc39            fedora      20 k
 perl-Fedora-VSP              noarch  0.001-32.fc39            fedora      23 k
 perl-File-Basename           noarch  2.86-500.fc39            fedora      17 k
 perl-File-Compare            noarch  1.100.700-500.fc39       fedora      13 k
 perl-File-Copy               noarch  2.41-500.fc39            fedora      20 k
 perl-File-Find               noarch  1.43-500.fc39            fedora      25 k
 perl-File-Path               noarch  2.18-500.fc39            fedora      35 k
 perl-File-Temp               noarch  1:0.231.100-500.fc39     fedora      58 k
 perl-File-stat               noarch  1.13-500.fc39            fedora      17 k
 perl-FileHandle              noarch  2.05-500.fc39            fedora      16 k
 perl-Getopt-Long             noarch  1:2.54-500.fc39          fedora      60 k
 perl-Getopt-Std              noarch  1.13-500.fc39            fedora      16 k
 perl-HTTP-Tiny               noarch  0.088-3.fc39             fedora      56 k
 perl-IO                      x86_64  1.52-500.fc39            fedora      82 k
 perl-IO-Socket-IP            noarch  0.42-1.fc39              fedora      42 k
 perl-IO-Socket-SSL           noarch  2.083-3.fc39             fedora     225 k
 perl-IPC-Open3               noarch  1.22-500.fc39            fedora      22 k
 perl-MIME-Base64             x86_64  3.16-500.fc39            fedora      29 k
 perl-Mozilla-CA              noarch  20230821-1.fc40          fedora      13 k
 perl-Net-SSLeay              x86_64  1.92-10.fc39             fedora     360 k
 perl-POSIX                   x86_64  2.13-500.fc39            fedora      97 k
 perl-PathTools               x86_64  3.89-500.fc39            fedora      87 k
 perl-Pod-Escapes             noarch  1:1.07-501.fc40          fedora      19 k
 perl-Pod-Perldoc             noarch  3.28.01-501.fc39         fedora      86 k
 perl-Pod-Simple              noarch  1:3.45-4.fc39            fedora     218 k
 perl-Pod-Usage               noarch  4:2.03-500.fc39          fedora      39 k
 perl-Scalar-List-Utils       x86_64  5:1.63-500.fc39          fedora      72 k
 perl-SelectSaver             noarch  1.02-500.fc39            fedora      12 k
 perl-Socket                  x86_64  4:2.037-3.fc39           fedora      55 k
 perl-Storable                x86_64  1:3.32-500.fc39          fedora      99 k
 perl-Symbol                  noarch  1.09-500.fc39            fedora      14 k
 perl-Term-ANSIColor          noarch  5.01-501.fc39            fedora      47 k
 perl-Term-Cap                noarch  1.18-500.fc39            fedora      22 k
 perl-Text-ParseWords         noarch  3.31-500.fc39            fedora      16 k
 perl-Text-Tabs+Wrap          noarch  2023.0511-3.fc39         fedora      22 k
 perl-Thread-Queue            noarch  3.14-501.fc40            fedora      21 k
 perl-Time-Local              noarch  2:1.350-3.fc39           fedora      34 k
 perl-URI                     noarch  5.21-1.fc40              fedora     125 k
 perl-base                    noarch  2.27-500.fc39            fedora      16 k
 perl-constant                noarch  1.33-501.fc39            fedora      22 k
 perl-if                      noarch  0.61.000-500.fc39        fedora      14 k
 perl-interpreter             x86_64  4:5.38.0-500.fc39        fedora      72 k
 perl-libnet                  noarch  3.15-501.fc39            fedora     129 k
 perl-libs                    x86_64  4:5.38.0-500.fc39        fedora     2.3 M
 perl-locale                  noarch  1.10-500.fc39            fedora      14 k
 perl-macros                  noarch  4:5.38.0-500.fc39        fedora      12 k
 perl-mro                     x86_64  1.28-500.fc39            fedora      29 k
 perl-overload                noarch  1.37-500.fc39            fedora      46 k
 perl-overloading             noarch  0.02-500.fc39            fedora      13 k
 perl-parent                  noarch  1:0.241-500.fc39         fedora      14 k
 perl-podlators               noarch  1:5.01-500.fc39          fedora     125 k
 perl-threads                 x86_64  1:2.36-500.fc39          fedora      58 k
 perl-threads-shared          x86_64  1.68-500.fc39            fedora      45 k
 perl-vars                    noarch  1.05-500.fc39            fedora      13 k
 python-pip-wheel             noarch  23.2.1-1.fc39            fedora     1.5 M
 python3                      x86_64  3.12.0~rc2-1.fc40        fedora      26 k
 python3-libs                 x86_64  3.12.0~rc2-1.fc40        fedora     9.2 M
 python3-numpy                x86_64  1:1.24.4-2.fc39          fedora     7.8 M

Transaction Summary
================================================================================
Install  158 Packages

Total download size: 164 M
Installed size: 705 M
Downloading Packages:
(1/158): boost-1.81.0-6.fc40.x86_64.rpm         478 kB/s |  15 kB     00:00    
(2/158): boost-atomic-1.81.0-6.fc40.x86_64.rpm  515 kB/s |  21 kB     00:00    
(3/158): boost-chrono-1.81.0-6.fc40.x86_64.rpm  645 kB/s |  27 kB     00:00    
(4/158): boost-container-1.81.0-6.fc40.x86_64.r 3.4 MB/s |  41 kB     00:00    
(5/158): boost-context-1.81.0-6.fc40.x86_64.rpm 1.6 MB/s |  18 kB     00:00    
(6/158): boost-contract-1.81.0-6.fc40.x86_64.rp 3.0 MB/s |  47 kB     00:00    
(7/158): boost-coroutine-1.81.0-6.fc40.x86_64.r 1.4 MB/s |  21 kB     00:00    
(8/158): boost-date-time-1.81.0-6.fc40.x86_64.r 1.5 MB/s |  17 kB     00:00    
(9/158): boost-fiber-1.81.0-6.fc40.x86_64.rpm   1.8 MB/s |  43 kB     00:00    
(10/158): boost-filesystem-1.81.0-6.fc40.x86_64 1.9 MB/s |  68 kB     00:00    
(11/158): boost-graph-1.81.0-6.fc40.x86_64.rpm  1.5 MB/s | 153 kB     00:00    
(12/158): boost-iostreams-1.81.0-6.fc40.x86_64. 323 kB/s |  43 kB     00:00    
(13/158): boost-devel-1.81.0-6.fc40.x86_64.rpm   56 MB/s |  12 MB     00:00    
(14/158): boost-json-1.81.0-6.fc40.x86_64.rpm   1.4 MB/s | 111 kB     00:00    
(15/158): boost-locale-1.81.0-6.fc40.x86_64.rpm 6.5 MB/s | 222 kB     00:00    
(16/158): boost-log-1.81.0-6.fc40.x86_64.rpm     32 MB/s | 494 kB     00:00    
(17/158): boost-nowide-1.81.0-6.fc40.x86_64.rpm 1.5 MB/s |  22 kB     00:00    
(18/158): boost-math-1.81.0-6.fc40.x86_64.rpm    13 MB/s | 219 kB     00:00    
(19/158): boost-numpy3-1.81.0-6.fc40.x86_64.rpm 3.0 MB/s |  31 kB     00:00    
(20/158): boost-program-options-1.81.0-6.fc40.x  11 MB/s | 110 kB     00:00    
(21/158): boost-python3-1.81.0-6.fc40.x86_64.rp 9.5 MB/s |  98 kB     00:00    
(22/158): boost-random-1.81.0-6.fc40.x86_64.rpm 2.5 MB/s |  25 kB     00:00    
(23/158): boost-regex-1.81.0-6.fc40.x86_64.rpm   10 MB/s | 112 kB     00:00    
(24/158): boost-serialization-1.81.0-6.fc40.x86  11 MB/s | 136 kB     00:00    
(25/158): boost-stacktrace-1.81.0-6.fc40.x86_64 3.2 MB/s |  31 kB     00:00    
(26/158): boost-system-1.81.0-6.fc40.x86_64.rpm 1.9 MB/s |  17 kB     00:00    
(27/158): boost-test-1.81.0-6.fc40.x86_64.rpm    19 MB/s | 241 kB     00:00    
(28/158): boost-thread-1.81.0-6.fc40.x86_64.rpm 6.0 MB/s |  60 kB     00:00    
(29/158): boost-timer-1.81.0-6.fc40.x86_64.rpm  2.4 MB/s |  25 kB     00:00    
(30/158): boost-type_erasure-1.81.0-6.fc40.x86_ 3.8 MB/s |  34 kB     00:00    
(31/158): boost-wave-1.81.0-6.fc40.x86_64.rpm    18 MB/s | 226 kB     00:00    
(32/158): glibc-devel-2.38.9000-8.fc40.x86_64.r 7.1 MB/s |  84 kB     00:00    
(33/158): glibc-headers-x86-2.38.9000-8.fc40.no  31 MB/s | 497 kB     00:00    
(34/158): htslib-1.15.1-3.fc40.x86_64.rpm        26 MB/s | 490 kB     00:00    
(35/158): htslib-devel-1.15.1-3.fc40.x86_64.rpm 5.3 MB/s | 100 kB     00:00    
(36/158): zlib-ng-compat-devel-2.1.3-3.fc40.x86 3.6 MB/s |  34 kB     00:00    
(37/158): SuperLU-devel-6.0.0-1.fc39.x86_64.rpm  60 kB/s |  27 kB     00:00    
(38/158): annobin-docs-12.26-1.fc40.noarch.rpm  176 kB/s |  94 kB     00:00    
(39/158): armadillo-10.8.2-5.fc39.x86_64.rpm    228 kB/s |  34 kB     00:00    
(40/158): SuperLU-6.0.0-1.fc39.x86_64.rpm       257 kB/s | 186 kB     00:00    
(41/158): arpack-3.8.0-7.fc39.x86_64.rpm        689 kB/s | 205 kB     00:00    
(42/158): annobin-plugin-gcc-12.26-1.fc40.x86_6 1.4 MB/s | 958 kB     00:00    
(43/158): arpack-devel-3.8.0-7.fc39.x86_64.rpm   88 kB/s |  14 kB     00:00    
(44/158): autoconf-2.71-7.fc40.noarch.rpm       5.0 MB/s | 733 kB     00:00    
(45/158): armadillo-devel-10.8.2-5.fc39.x86_64. 3.2 MB/s | 2.2 MB     00:00    
(46/158): cmake-filesystem-3.27.4-8.fc40.x86_64 142 kB/s |  19 kB     00:00    
(47/158): automake-1.16.5-14.fc40.noarch.rpm    2.5 MB/s | 697 kB     00:00    
(48/158): emacs-filesystem-29.1-1.fc39.noarch.r  63 kB/s | 8.4 kB     00:00    
(49/158): expat-2.5.0-3.fc39.x86_64.rpm         811 kB/s | 110 kB     00:00    
(50/158): flexiblas-3.3.1-5.fc39.x86_64.rpm     198 kB/s |  33 kB     00:00    
(51/158): flexiblas-devel-3.3.1-5.fc39.x86_64.r 761 kB/s | 117 kB     00:00    
(52/158): flexiblas-netlib-3.3.1-5.fc39.x86_64. 9.3 MB/s | 3.1 MB     00:00    
(53/158): flexiblas-netlib64-3.3.1-5.fc39.x86_6 8.8 MB/s | 3.0 MB     00:00    
(54/158): flexiblas-openblas-openmp-3.3.1-5.fc3 119 kB/s |  17 kB     00:00    
(55/158): flexiblas-openblas-openmp64-3.3.1-5.f 111 kB/s |  17 kB     00:00    
(56/158): gc-8.2.2-4.fc39.x86_64.rpm            828 kB/s | 110 kB     00:00    
(57/158): cpp-13.2.1-1.fc39.x86_64.rpm          9.9 MB/s |  11 MB     00:01    
(58/158): gcc-gfortran-13.2.1-1.fc39.x86_64.rpm  11 MB/s |  12 MB     00:01    
(59/158): gcc-plugin-annobin-13.2.1-1.fc39.x86_ 365 kB/s |  47 kB     00:00    
(60/158): groff-base-1.23.0-2.fc39.x86_64.rpm   8.2 MB/s | 1.1 MB     00:00    
(61/158): gsl-2.7.1-5.fc39.x86_64.rpm           5.4 MB/s | 1.1 MB     00:00    
(62/158): gsl-devel-2.7.1-5.fc39.x86_64.rpm     3.5 MB/s | 653 kB     00:00    
(63/158): gcc-c++-13.2.1-1.fc39.x86_64.rpm      5.6 MB/s |  13 MB     00:02    
(64/158): guile22-2.2.7-9.fc39.x86_64.rpm        10 MB/s | 6.5 MB     00:00    
(65/158): hdf5-1.12.1-12.fc39.x86_64.rpm        6.9 MB/s | 2.2 MB     00:00    
(66/158): hdf5-devel-1.12.1-12.fc39.x86_64.rpm  6.3 MB/s | 1.3 MB     00:00    
(67/158): kernel-headers-6.6.0-0.rc1.git0.1.fc4 4.8 MB/s | 1.6 MB     00:00    
(68/158): libaec-1.0.6-5.fc39.x86_64.rpm        303 kB/s |  42 kB     00:00    
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(135/158): perl-Thread-Queue-3.14-501.fc40.noar 166 kB/s |  21 kB     00:00    
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(137/158): perl-URI-5.21-1.fc40.noarch.rpm      951 kB/s | 125 kB     00:00    
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(139/158): perl-constant-1.33-501.fc39.noarch.r 158 kB/s |  22 kB     00:00    
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(150/158): perl-podlators-5.01-500.fc39.noarch. 947 kB/s | 125 kB     00:00    
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(152/158): perl-threads-2.36-500.fc39.x86_64.rp 444 kB/s |  58 kB     00:00    
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(154/158): perl-threads-shared-1.68-500.fc39.x8 330 kB/s |  45 kB     00:00    
(155/158): python3-3.12.0~rc2-1.fc40.x86_64.rpm 191 kB/s |  26 kB     00:00    
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Total                                            13 MB/s | 164 MB     00:12     
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Installed:
  SuperLU-6.0.0-1.fc39.x86_64                                                   
  SuperLU-devel-6.0.0-1.fc39.x86_64                                             
  annobin-docs-12.26-1.fc40.noarch                                              
  annobin-plugin-gcc-12.26-1.fc40.x86_64                                        
  armadillo-10.8.2-5.fc39.x86_64                                                
  armadillo-devel-10.8.2-5.fc39.x86_64                                          
  arpack-3.8.0-7.fc39.x86_64                                                    
  arpack-devel-3.8.0-7.fc39.x86_64                                              
  autoconf-2.71-7.fc40.noarch                                                   
  automake-1.16.5-14.fc40.noarch                                                
  boost-1.81.0-6.fc40.x86_64                                                    
  boost-atomic-1.81.0-6.fc40.x86_64                                             
  boost-chrono-1.81.0-6.fc40.x86_64                                             
  boost-container-1.81.0-6.fc40.x86_64                                          
  boost-context-1.81.0-6.fc40.x86_64                                            
  boost-contract-1.81.0-6.fc40.x86_64                                           
  boost-coroutine-1.81.0-6.fc40.x86_64                                          
  boost-date-time-1.81.0-6.fc40.x86_64                                          
  boost-devel-1.81.0-6.fc40.x86_64                                              
  boost-fiber-1.81.0-6.fc40.x86_64                                              
  boost-filesystem-1.81.0-6.fc40.x86_64                                         
  boost-graph-1.81.0-6.fc40.x86_64                                              
  boost-iostreams-1.81.0-6.fc40.x86_64                                          
  boost-json-1.81.0-6.fc40.x86_64                                               
  boost-locale-1.81.0-6.fc40.x86_64                                             
  boost-log-1.81.0-6.fc40.x86_64                                                
  boost-math-1.81.0-6.fc40.x86_64                                               
  boost-nowide-1.81.0-6.fc40.x86_64                                             
  boost-numpy3-1.81.0-6.fc40.x86_64                                             
  boost-program-options-1.81.0-6.fc40.x86_64                                    
  boost-python3-1.81.0-6.fc40.x86_64                                            
  boost-random-1.81.0-6.fc40.x86_64                                             
  boost-regex-1.81.0-6.fc40.x86_64                                              
  boost-serialization-1.81.0-6.fc40.x86_64                                      
  boost-stacktrace-1.81.0-6.fc40.x86_64                                         
  boost-system-1.81.0-6.fc40.x86_64                                             
  boost-test-1.81.0-6.fc40.x86_64                                               
  boost-thread-1.81.0-6.fc40.x86_64                                             
  boost-timer-1.81.0-6.fc40.x86_64                                              
  boost-type_erasure-1.81.0-6.fc40.x86_64                                       
  boost-wave-1.81.0-6.fc40.x86_64                                               
  cmake-filesystem-3.27.4-8.fc40.x86_64                                         
  cpp-13.2.1-1.fc39.x86_64                                                      
  emacs-filesystem-1:29.1-1.fc39.noarch                                         
  expat-2.5.0-3.fc39.x86_64                                                     
  flexiblas-3.3.1-5.fc39.x86_64                                                 
  flexiblas-devel-3.3.1-5.fc39.x86_64                                           
  flexiblas-netlib-3.3.1-5.fc39.x86_64                                          
  flexiblas-netlib64-3.3.1-5.fc39.x86_64                                        
  flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64                                 
  flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64                               
  gc-8.2.2-4.fc39.x86_64                                                        
  gcc-13.2.1-1.fc39.x86_64                                                      
  gcc-c++-13.2.1-1.fc39.x86_64                                                  
  gcc-gfortran-13.2.1-1.fc39.x86_64                                             
  gcc-plugin-annobin-13.2.1-1.fc39.x86_64                                       
  glibc-devel-2.38.9000-8.fc40.x86_64                                           
  glibc-headers-x86-2.38.9000-8.fc40.noarch                                     
  groff-base-1.23.0-2.fc39.x86_64                                               
  gsl-2.7.1-5.fc39.x86_64                                                       
  gsl-devel-2.7.1-5.fc39.x86_64                                                 
  guile22-2.2.7-9.fc39.x86_64                                                   
  hdf5-1.12.1-12.fc39.x86_64                                                    
  hdf5-devel-1.12.1-12.fc39.x86_64                                              
  htslib-1.15.1-3.fc40.x86_64                                                   
  htslib-devel-1.15.1-3.fc40.x86_64                                             
  kernel-headers-6.6.0-0.rc1.git0.1.fc40.x86_64                                 
  libaec-1.0.6-5.fc39.x86_64                                                    
  libaec-devel-1.0.6-5.fc39.x86_64                                              
  libb2-0.98.1-9.fc39.x86_64                                                    
  libgfortran-13.2.1-1.fc39.x86_64                                              
  libicu-73.2-2.fc39.x86_64                                                     
  libicu-devel-73.2-2.fc39.x86_64                                               
  libmpc-1.3.1-3.fc39.x86_64                                                    
  libquadmath-13.2.1-1.fc39.x86_64                                              
  libquadmath-devel-13.2.1-1.fc39.x86_64                                        
  libstdc++-devel-13.2.1-1.fc39.x86_64                                          
  libtool-ltdl-2.4.7-8.fc40.x86_64                                              
  libxcrypt-devel-4.4.36-2.fc39.x86_64                                          
  m4-1.4.19-7.fc40.x86_64                                                       
  make-1:4.4.1-2.fc39.x86_64                                                    
  metis-5.1.0.3-2.fc39.x86_64                                                   
  mpdecimal-2.5.1-7.fc39.x86_64                                                 
  ncurses-6.4-7.20230520.fc40.x86_64                                            
  openblas-0.3.21-6.fc39.x86_64                                                 
  openblas-openmp-0.3.21-6.fc39.x86_64                                          
  openblas-openmp64-0.3.21-6.fc39.x86_64                                        
  perl-AutoLoader-5.74-500.fc39.noarch                                          
  perl-B-1.88-500.fc39.x86_64                                                   
  perl-Carp-1.54-500.fc39.noarch                                                
  perl-Class-Struct-0.68-500.fc39.noarch                                        
  perl-Data-Dumper-2.188-501.fc39.x86_64                                        
  perl-Digest-1.20-500.fc39.noarch                                              
  perl-Digest-MD5-2.58-500.fc39.x86_64                                          
  perl-DynaLoader-1.54-500.fc39.x86_64                                          
  perl-Encode-4:3.19-500.fc39.x86_64                                            
  perl-Errno-1.37-500.fc39.x86_64                                               
  perl-Exporter-5.77-500.fc39.noarch                                            
  perl-Fcntl-1.15-500.fc39.x86_64                                               
  perl-Fedora-VSP-0.001-32.fc39.noarch                                          
  perl-File-Basename-2.86-500.fc39.noarch                                       
  perl-File-Compare-1.100.700-500.fc39.noarch                                   
  perl-File-Copy-2.41-500.fc39.noarch                                           
  perl-File-Find-1.43-500.fc39.noarch                                           
  perl-File-Path-2.18-500.fc39.noarch                                           
  perl-File-Temp-1:0.231.100-500.fc39.noarch                                    
  perl-File-stat-1.13-500.fc39.noarch                                           
  perl-FileHandle-2.05-500.fc39.noarch                                          
  perl-Getopt-Long-1:2.54-500.fc39.noarch                                       
  perl-Getopt-Std-1.13-500.fc39.noarch                                          
  perl-HTTP-Tiny-0.088-3.fc39.noarch                                            
  perl-IO-1.52-500.fc39.x86_64                                                  
  perl-IO-Socket-IP-0.42-1.fc39.noarch                                          
  perl-IO-Socket-SSL-2.083-3.fc39.noarch                                        
  perl-IPC-Open3-1.22-500.fc39.noarch                                           
  perl-MIME-Base64-3.16-500.fc39.x86_64                                         
  perl-Mozilla-CA-20230821-1.fc40.noarch                                        
  perl-Net-SSLeay-1.92-10.fc39.x86_64                                           
  perl-POSIX-2.13-500.fc39.x86_64                                               
  perl-PathTools-3.89-500.fc39.x86_64                                           
  perl-Pod-Escapes-1:1.07-501.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-501.fc39.noarch                                      
  perl-Pod-Simple-1:3.45-4.fc39.noarch                                          
  perl-Pod-Usage-4:2.03-500.fc39.noarch                                         
  perl-Scalar-List-Utils-5:1.63-500.fc39.x86_64                                 
  perl-SelectSaver-1.02-500.fc39.noarch                                         
  perl-Socket-4:2.037-3.fc39.x86_64                                             
  perl-Storable-1:3.32-500.fc39.x86_64                                          
  perl-Symbol-1.09-500.fc39.noarch                                              
  perl-Term-ANSIColor-5.01-501.fc39.noarch                                      
  perl-Term-Cap-1.18-500.fc39.noarch                                            
  perl-Text-ParseWords-3.31-500.fc39.noarch                                     
  perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch                                   
  perl-Thread-Queue-3.14-501.fc40.noarch                                        
  perl-Time-Local-2:1.350-3.fc39.noarch                                         
  perl-URI-5.21-1.fc40.noarch                                                   
  perl-base-2.27-500.fc39.noarch                                                
  perl-constant-1.33-501.fc39.noarch                                            
  perl-generators-1.16-3.fc39.noarch                                            
  perl-if-0.61.000-500.fc39.noarch                                              
  perl-interpreter-4:5.38.0-500.fc39.x86_64                                     
  perl-libnet-3.15-501.fc39.noarch                                              
  perl-libs-4:5.38.0-500.fc39.x86_64                                            
  perl-locale-1.10-500.fc39.noarch                                              
  perl-macros-4:5.38.0-500.fc39.noarch                                          
  perl-mro-1.28-500.fc39.x86_64                                                 
  perl-overload-1.37-500.fc39.noarch                                            
  perl-overloading-0.02-500.fc39.noarch                                         
  perl-parent-1:0.241-500.fc39.noarch                                           
  perl-podlators-1:5.01-500.fc39.noarch                                         
  perl-threads-1:2.36-500.fc39.x86_64                                           
  perl-threads-shared-1.68-500.fc39.x86_64                                      
  perl-vars-1.05-500.fc39.noarch                                                
  python-pip-wheel-23.2.1-1.fc39.noarch                                         
  python3-3.12.0~rc2-1.fc40.x86_64                                              
  python3-libs-3.12.0~rc2-1.fc40.x86_64                                         
  python3-numpy-1:1.24.4-2.fc39.x86_64                                          
  zlib-ng-compat-devel-2.1.3-3.fc40.x86_64                                      

Complete!
Finish: build setup for mmseq-1.0.11-16.fc40.src.rpm
Start: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689811200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.pWugmh
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #2 (mmseq-zlib.patch):'
Patch #2 (mmseq-zlib.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.37qIFK
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccncms65.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x3ef6): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1f3b2d
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-16.fc40 --unique-debug-suffix -1.0.11-16.fc40.x86_64 --unique-debug-src-base mmseq-1.0.11-16.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-16.fc40.x86_64
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.JqdkxX
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-16.fc40.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.5dOFkk
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/share/doc/mmseq
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/README.md /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/COPYING /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/doc /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-16.fc40 mmseq(x86-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.81.0()(64bit) libboost_regex.so.1.81.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-16.fc40.x86_64
Provides: mmseq-debugsource = 1.0.11-16.fc40 mmseq-debugsource(x86-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-16.fc40.x86_64
Provides: debuginfo(build-id) = 30731367aeb9614a8a63a1e81c287befd5afd069 debuginfo(build-id) = 7aa386fb60983974962d4e80edf832196ac0e83e debuginfo(build-id) = 93c68dbf4bd8d64c57207f672515b8d8a7657e6d debuginfo(build-id) = 98b51c89ec406443bbad612d58edf7d3712dd601 debuginfo(build-id) = bdd0652f1d43fd2a3946eda5d942216b2cf44d88 debuginfo(build-id) = d05ea58f1a639975a059064832bcdce071c678c3 debuginfo(build-id) = ebfd52004e92c46345a1771735576e449d029416 debuginfo(build-id) = fa4a72f97573dc84a88b187b43edad0cabf11295 mmseq-debuginfo = 1.0.11-16.fc40 mmseq-debuginfo(x86-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(x86-64) = 1.0.11-16.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64
Wrote: /builddir/build/RPMS/mmseq-1.0.11-16.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-16.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-16.fc40.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.fycpkZ
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.lcX0Vc
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ rm -rf mmseq-1.0.11 mmseq-1.0.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
Finish: build phase for mmseq-1.0.11-16.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1695053388.093408/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1695053388.093408/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1695053388.093408/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm) Config(child) 1 minutes 44 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "x86_64"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "src"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "x86_64"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished