read.celfile.probeintensity.matrices {affyio} | R Documentation |
This function reads PM, MM or both types of intensities into matrices. These matrices have all the probes for a probeset in adjacent rows
read.celfile.probeintensity.matrices(filenames, cdfInfo, rm.mask=FALSE, rm.outliers=FALSE, rm.extra=FALSE, verbose=FALSE, which= c("pm","mm","both"))
filenames |
a character vector of filenames |
cdfInfo |
a list with items giving PM and MM locations for
desired probesets. In same structure as returned by |
rm.mask |
a |
rm.outliers |
a |
.
rm.extra |
a |
.
verbose |
a |
which |
a string specifing which probe type to return |
returns a list
of matrix
items. One
matrix contains PM probe intensities, with probes in rows and arrays
in columns
B. M. Bolstad <bmb@bmbolstad.com>