Warning: Permanently added '23.20.210.116' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408570-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64


Version: 0.69
PID: 11299
Logging PID: 11300
Task:
{'appstream': False,
 'background': True,
 'build_id': 6408570,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-aarch64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'd90ec6488e8c84044343d967e56d4d0262350e8a',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/smoldyn',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'smoldyn',
 'package_version': '2.72-2',
 'project_dirname': 'zlib-ng-compat-mpb',
 'project_name': 'zlib-ng-compat-mpb',
 'project_owner': 'tuliom',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-aarch64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom',
 'source_json': {},
 'source_type': None,
 'submitter': 'tuliom',
 'tags': [],
 'task_id': '6408570-fedora-rawhide-aarch64',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn'...

Running: git checkout d90ec6488e8c84044343d967e56d4d0262350e8a --

cmd: ['git', 'checkout', 'd90ec6488e8c84044343d967e56d4d0262350e8a', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn
rc: 0
stdout: 
stderr: Note: switching to 'd90ec6488e8c84044343d967e56d4d0262350e8a'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at d90ec64 automatic import of smoldyn

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading Smoldyn-2.72.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o Smoldyn-2.72.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/smoldyn/Smoldyn-2.72.tar.gz/md5/55177f82859a034ac5418e6894089192/Smoldyn-2.72.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
                                 Dload  Upload   Total   Spent    Left  Speed
100 96.4M  100 96.4M    0     0   174M      0 --:--:-- --:--:-- --:--:--  174M
INFO: Reading stdout from command: md5sum Smoldyn-2.72.tar.gz

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695459271.609342 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn/smoldyn.spec)  Config(fedora-rawhide-aarch64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.1.1
INFO: Mock Version: 5.1.1
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695459271.609342/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695459271.609342/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/4a5121601dbc816ebcac8f14482a73ae77ec5235171d2cb07e83cd0120003251/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/4a5121601dbc816ebcac8f14482a73ae77ec5235171d2cb07e83cd0120003251/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  61 MB/s |  13 MB     00:00    
fedora                                           40 MB/s |  69 MB     00:01    
Last metadata expiration check: 0:00:02 ago on Sat Sep 23 08:54:37 2023.
Package python3-dnf-4.17.0-6.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch        Version              Repository  Size
================================================================================
Installing:
 python3-dnf-plugins-core     noarch      4.4.2-1.fc39         fedora     293 k
Installing dependencies:
 dbus-libs                    aarch64     1:1.14.10-1.fc40     fedora     156 k
 python3-dateutil             noarch      1:2.8.2-10.fc39      fedora     355 k
 python3-dbus                 aarch64     1.3.2-4.fc39         fedora     157 k
 python3-distro               noarch      1.8.0-6.fc39         fedora      49 k
 python3-six                  noarch      1.16.0-12.fc39       fedora      41 k
 python3-systemd              aarch64     235-5.fc39           fedora     107 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 1.1 M
Installed size: 4.6 M
Downloading Packages:
(1/7): dbus-libs-1.14.10-1.fc40.aarch64.rpm     8.4 MB/s | 156 kB     00:00    
(2/7): python3-dbus-1.3.2-4.fc39.aarch64.rpm    8.0 MB/s | 157 kB     00:00    
(3/7): python3-distro-1.8.0-6.fc39.noarch.rpm    34 MB/s |  49 kB     00:00    
(4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp  16 MB/s | 355 kB     00:00    
(5/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 110 MB/s | 293 kB     00:00    
(6/7): python3-six-1.16.0-12.fc39.noarch.rpm     18 MB/s |  41 kB     00:00    
(7/7): python3-systemd-235-5.fc39.aarch64.rpm    84 MB/s | 107 kB     00:00    
--------------------------------------------------------------------------------
Total                                           3.5 MB/s | 1.1 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : python3-systemd-235-5.fc39.aarch64                     1/7 
  Installing       : python3-six-1.16.0-12.fc39.noarch                      2/7 
  Installing       : python3-dateutil-1:2.8.2-10.fc39.noarch                3/7 
  Installing       : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Installing       : dbus-libs-1:1.14.10-1.fc40.aarch64                     5/7 
  Installing       : python3-dbus-1.3.2-4.fc39.aarch64                      6/7 
  Installing       : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Verifying        : dbus-libs-1:1.14.10-1.fc40.aarch64                     1/7 
  Verifying        : python3-dateutil-1:2.8.2-10.fc39.noarch                2/7 
  Verifying        : python3-dbus-1.3.2-4.fc39.aarch64                      3/7 
  Verifying        : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Verifying        : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           5/7 
  Verifying        : python3-six-1.16.0-12.fc39.noarch                      6/7 
  Verifying        : python3-systemd-235-5.fc39.aarch64                     7/7 

Installed:
  dbus-libs-1:1.14.10-1.fc40.aarch64                                            
  python3-dateutil-1:2.8.2-10.fc39.noarch                                       
  python3-dbus-1.3.2-4.fc39.aarch64                                             
  python3-distro-1.8.0-6.fc39.noarch                                            
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch                                  
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-systemd-235-5.fc39.aarch64                                            

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  78 kB/s | 1.5 kB     00:00    
Copr repository                                 157 MB/s |  13 MB     00:00    
fedora                                          372 kB/s |  11 kB     00:00    
Last metadata expiration check: 0:00:02 ago on Sat Sep 23 08:55:00 2023.
Dependencies resolved.
================================================================================
 Package                     Arch    Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                        aarch64 5.2.15-5.fc39              fedora    1.8 M
 bzip2                       aarch64 1.0.8-16.fc39              fedora     52 k
 coreutils                   aarch64 9.4-1.fc40                 fedora    1.2 M
 cpio                        aarch64 2.14-4.fc39                fedora    277 k
 diffutils                   aarch64 3.10-3.fc39                fedora    396 k
 fedora-release-common       noarch  40-0.8                     fedora     18 k
 findutils                   aarch64 1:4.9.0-6.fc40             fedora    495 k
 gawk                        aarch64 5.2.2-2.fc39               fedora    1.1 M
 glibc-minimal-langpack      aarch64 2.38.9000-9.fc40           fedora     74 k
 grep                        aarch64 3.11-5.fc40                fedora    296 k
 gzip                        aarch64 1.12-6.fc39                fedora    164 k
 info                        aarch64 7.0.3-3.fc39               fedora    179 k
 patch                       aarch64 2.7.6-22.fc39              fedora    123 k
 redhat-rpm-config           noarch  270-1.fc40                 copr_base  74 k
 rpm-build                   aarch64 4.19.0-1.fc40              fedora     79 k
 sed                         aarch64 4.8-14.fc39                fedora    304 k
 shadow-utils                aarch64 2:4.14.0-1.fc40            fedora    1.3 M
 tar                         aarch64 2:1.35-2.fc40              fedora    854 k
 unzip                       aarch64 6.0-62.fc39                fedora    183 k
 util-linux                  aarch64 2.39.2-1.fc40              copr_base 1.1 M
 which                       aarch64 2.21-40.fc39               fedora     42 k
 xz                          aarch64 5.4.4-1.fc39               fedora    556 k
Installing dependencies:
 alternatives                aarch64 1.25-1.fc39                fedora     38 k
 ansible-srpm-macros         noarch  1-11.fc39                  fedora     21 k
 audit-libs                  aarch64 3.1.2-4.fc40               fedora    118 k
 authselect                  aarch64 1.4.2-3.fc39               fedora    144 k
 authselect-libs             aarch64 1.4.2-3.fc39               fedora    249 k
 basesystem                  noarch  11-18.fc39                 fedora    7.2 k
 binutils                    aarch64 2.41-5.fc40                fedora    6.7 M
 binutils-gold               aarch64 2.41-5.fc40                fedora    948 k
 bzip2-libs                  aarch64 1.0.8-16.fc39              fedora     43 k
 ca-certificates             noarch  2023.2.60_v7.0.306-3.fc40  fedora    837 k
 coreutils-common            aarch64 9.4-1.fc40                 fedora    2.1 M
 cracklib                    aarch64 2.9.11-2.fc40              copr_base  84 k
 crypto-policies             noarch  20230920-1.git570ea89.fc40 fedora     99 k
 curl                        aarch64 8.3.0-1.fc40               copr_base 350 k
 cyrus-sasl-lib              aarch64 2.1.28-11.fc40             copr_base 781 k
 debugedit                   aarch64 5.0-10.fc39                fedora     77 k
 dwz                         aarch64 0.15-3.fc39                fedora    136 k
 ed                          aarch64 1.19-4.fc39                fedora     78 k
 efi-srpm-macros             noarch  5-9.fc39                   fedora     22 k
 elfutils                    aarch64 0.189-6.fc40               fedora    539 k
 elfutils-debuginfod-client  aarch64 0.189-6.fc40               fedora     38 k
 elfutils-default-yama-scope noarch  0.189-6.fc40               fedora     13 k
 elfutils-libelf             aarch64 0.189-6.fc40               fedora    194 k
 elfutils-libs               aarch64 0.189-6.fc40               fedora    258 k
 fedora-gpg-keys             noarch  40-0.1                     fedora    130 k
 fedora-release              noarch  40-0.8                     fedora    8.1 k
 fedora-release-identity-basic
                             noarch  40-0.8                     fedora    8.9 k
 fedora-repos                noarch  40-0.1                     fedora    9.4 k
 fedora-repos-rawhide        noarch  40-0.1                     fedora    9.0 k
 file                        aarch64 5.45-1.fc40                copr_base  50 k
 file-libs                   aarch64 5.45-1.fc40                copr_base 762 k
 filesystem                  aarch64 3.18-6.fc39                fedora    1.1 M
 fonts-srpm-macros           noarch  1:2.0.5-12.fc39            fedora     26 k
 forge-srpm-macros           noarch  0.1.0-1.fc40               fedora     18 k
 fpc-srpm-macros             noarch  1.3-8.fc39                 fedora    7.4 k
 gdb-minimal                 aarch64 13.2-9.fc40                fedora    3.8 M
 gdbm-libs                   aarch64 1:1.23-4.fc39              fedora     56 k
 ghc-srpm-macros             noarch  1.6.1-3.fc40               fedora    8.1 k
 glibc                       aarch64 2.38.9000-9.fc40           fedora    1.7 M
 glibc-common                aarch64 2.38.9000-9.fc40           fedora    351 k
 glibc-gconv-extra           aarch64 2.38.9000-9.fc40           fedora    2.0 M
 gmp                         aarch64 1:6.2.1-5.fc39             fedora    266 k
 gnat-srpm-macros            noarch  6-3.fc39                   fedora    8.8 k
 go-srpm-macros              noarch  3.2.0-7.fc40               fedora     27 k
 jansson                     aarch64 2.13.1-7.fc39              fedora     46 k
 kernel-srpm-macros          noarch  1.0-20.fc39                fedora     10 k
 keyutils-libs               aarch64 1.6.1-7.fc39               fedora     31 k
 krb5-libs                   aarch64 1.21.2-1.fc40              fedora    772 k
 libacl                      aarch64 2.3.1-9.fc40               fedora     23 k
 libarchive                  aarch64 3.7.2-1.fc40               copr_base 403 k
 libattr                     aarch64 2.5.1-9.fc40               fedora     18 k
 libblkid                    aarch64 2.39.2-1.fc40              copr_base 116 k
 libbrotli                   aarch64 1.1.0-1.fc40               fedora    344 k
 libcap                      aarch64 2.48-7.fc39                fedora     68 k
 libcap-ng                   aarch64 0.8.3-8.fc40               fedora     32 k
 libcom_err                  aarch64 1.47.0-2.fc39              fedora     26 k
 libcurl                     aarch64 8.3.0-1.fc40               copr_base 337 k
 libdb                       aarch64 5.3.28-58.fc40             copr_base 735 k
 libeconf                    aarch64 0.5.2-1.fc40               fedora     30 k
 libevent                    aarch64 2.1.12-9.fc39              fedora    254 k
 libfdisk                    aarch64 2.39.2-1.fc40              copr_base 158 k
 libffi                      aarch64 3.4.4-4.fc39               fedora     38 k
 libgcc                      aarch64 13.2.1-3.fc40              fedora     95 k
 libgomp                     aarch64 13.2.1-3.fc40              fedora    312 k
 libidn2                     aarch64 2.3.4-3.fc39               fedora    118 k
 libmount                    aarch64 2.39.2-1.fc40              copr_base 153 k
 libnghttp2                  aarch64 1.56.0-1.fc40              copr_base  76 k
 libnsl2                     aarch64 2.0.0-6.fc39               fedora     30 k
 libpkgconf                  aarch64 1.9.5-2.fc39               fedora     38 k
 libpsl                      aarch64 0.21.2-4.fc39              fedora     63 k
 libpwquality                aarch64 1.4.5-6.fc39               fedora    120 k
 libselinux                  aarch64 3.5-5.fc39                 fedora     86 k
 libsemanage                 aarch64 3.5-4.fc39                 fedora    117 k
 libsepol                    aarch64 3.5-2.fc39                 fedora    311 k
 libsigsegv                  aarch64 2.14-5.fc39                fedora     27 k
 libsmartcols                aarch64 2.39.2-1.fc40              copr_base  66 k
 libssh                      aarch64 0.10.5-2.fc40              copr_base 212 k
 libssh-config               noarch  0.10.5-2.fc40              copr_base 9.7 k
 libstdc++                   aarch64 13.2.1-3.fc40              fedora    811 k
 libtasn1                    aarch64 4.19.0-3.fc39              fedora     73 k
 libtirpc                    aarch64 1.3.3-1.rc2.fc39           fedora     95 k
 libunistring                aarch64 1.1-5.fc40                 fedora    540 k
 libutempter                 aarch64 1.2.1-10.fc39              fedora     27 k
 libuuid                     aarch64 2.39.2-1.fc40              copr_base  28 k
 libverto                    aarch64 0.3.2-6.fc39               fedora     21 k
 libxcrypt                   aarch64 4.4.36-2.fc39              fedora    123 k
 libxml2                     aarch64 2.11.5-1.fc40              copr_base 687 k
 libzstd                     aarch64 1.5.5-4.fc40               copr_base 281 k
 lua-libs                    aarch64 5.4.6-3.fc39               fedora    131 k
 lua-srpm-macros             noarch  1-9.fc39                   fedora    8.6 k
 lz4-libs                    aarch64 1.9.4-4.fc39               fedora     68 k
 mpfr                        aarch64 4.2.0-3.fc39               fedora    319 k
 ncurses-base                noarch  6.4-7.20230520.fc40        fedora     88 k
 ncurses-libs                aarch64 6.4-7.20230520.fc40        fedora    326 k
 ocaml-srpm-macros           noarch  8-2.fc39                   fedora     14 k
 openblas-srpm-macros        noarch  2-14.fc39                  fedora    7.5 k
 openldap                    aarch64 2.6.6-1.fc39               fedora    251 k
 openssl-libs                aarch64 1:3.1.1-4.fc40             copr_base 2.0 M
 p11-kit                     aarch64 0.25.0-2.fc39              fedora    481 k
 p11-kit-trust               aarch64 0.25.0-2.fc39              fedora    140 k
 package-notes-srpm-macros   noarch  0.5-9.fc39                 fedora     11 k
 pam                         aarch64 1.5.3-2.fc39               fedora    558 k
 pam-libs                    aarch64 1.5.3-2.fc39               fedora     58 k
 pcre2                       aarch64 10.42-1.fc39.2             fedora    219 k
 pcre2-syntax                noarch  10.42-1.fc39.2             fedora    143 k
 perl-srpm-macros            noarch  1-51.fc39                  fedora    8.0 k
 pkgconf                     aarch64 1.9.5-2.fc39               fedora     42 k
 pkgconf-m4                  noarch  1.9.5-2.fc39               fedora     14 k
 pkgconf-pkg-config          aarch64 1.9.5-2.fc39               fedora    9.6 k
 popt                        aarch64 1.19-3.fc39                fedora     66 k
 publicsuffix-list-dafsa     noarch  20230812-1.fc40            fedora     57 k
 pyproject-srpm-macros       noarch  1.9.0-2.fc39               fedora     14 k
 python-srpm-macros          noarch  3.12-4.fc40                fedora     25 k
 qt5-srpm-macros             noarch  5.15.10-2.fc39             fedora    8.3 k
 qt6-srpm-macros             noarch  6.5.2-3.fc40               fedora    9.0 k
 readline                    aarch64 8.2-4.fc39                 fedora    211 k
 rpm                         aarch64 4.19.0-1.fc40              fedora    537 k
 rpm-build-libs              aarch64 4.19.0-1.fc40              fedora     92 k
 rpm-libs                    aarch64 4.19.0-1.fc40              fedora    306 k
 rpm-sequoia                 aarch64 1.5.0-1.fc40               fedora    842 k
 rust-srpm-macros            noarch  24-5.fc40                  fedora     12 k
 setup                       noarch  2.14.4-1.fc39              fedora    154 k
 sqlite-libs                 aarch64 3.43.1-1.fc40              fedora    679 k
 systemd-libs                aarch64 254.2-12.fc40              fedora    666 k
 util-linux-core             aarch64 2.39.2-1.fc40              copr_base 477 k
 xxhash-libs                 aarch64 0.8.2-1.fc39               fedora     35 k
 xz-libs                     aarch64 5.4.4-1.fc39               fedora    106 k
 zip                         aarch64 3.0-39.fc40                fedora    262 k
 zlib-ng-compat              aarch64 2.1.3-5.fc40               copr_base  66 k
 zstd                        aarch64 1.5.5-4.fc40               copr_base 446 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  152 Packages

Total size: 52 M
Installed size: 303 M
Downloading Packages:
[SKIPPED] cracklib-2.9.11-2.fc40.aarch64.rpm: Already downloaded               
[SKIPPED] curl-8.3.0-1.fc40.aarch64.rpm: Already downloaded                    
[SKIPPED] cyrus-sasl-lib-2.1.28-11.fc40.aarch64.rpm: Already downloaded        
[SKIPPED] file-5.45-1.fc40.aarch64.rpm: Already downloaded                     
[SKIPPED] file-libs-5.45-1.fc40.aarch64.rpm: Already downloaded                
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fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x18B8E74C:
 Userid     : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
 Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-6.fc39.aarch64                         1/1 
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warning: /etc/hosts created as /etc/hosts.rpmnew

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  Installing       : ed-1.19-4.fc39.aarch64                              80/152 
  Installing       : patch-2.7.6-22.fc39.aarch64                         81/152 
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  Installing       : cyrus-sasl-lib-2.1.28-11.fc40.aarch64               88/152 
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  Installing       : pkgconf-pkg-config-1.9.5-2.fc39.aarch64             99/152 
  Installing       : libsigsegv-2.14-5.fc39.aarch64                     100/152 
  Installing       : gawk-5.2.2-2.fc39.aarch64                          101/152 
  Installing       : libtasn1-4.19.0-3.fc39.aarch64                     102/152 
  Installing       : p11-kit-trust-0.25.0-2.fc39.aarch64                103/152 
  Running scriptlet: p11-kit-trust-0.25.0-2.fc39.aarch64                103/152 
  Installing       : libverto-0.3.2-6.fc39.aarch64                      104/152 
  Installing       : xxhash-libs-0.8.2-1.fc39.aarch64                   105/152 
  Installing       : kernel-srpm-macros-1.0-20.fc39.noarch              106/152 
  Installing       : gnat-srpm-macros-6-3.fc39.noarch                   107/152 
  Installing       : ghc-srpm-macros-1.6.1-3.fc40.noarch                108/152 
  Installing       : fpc-srpm-macros-1.3-8.fc39.noarch                  109/152 
  Installing       : coreutils-common-9.4-1.fc40.aarch64                110/152 
  Installing       : openssl-libs-1:3.1.1-4.fc40.aarch64                111/152 
  Installing       : coreutils-9.4-1.fc40.aarch64                       112/152 
  Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch   113/152 
  Installing       : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch   113/152 
  Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch   113/152 
  Installing       : krb5-libs-1.21.2-1.fc40.aarch64                    114/152 
  Installing       : libtirpc-1.3.3-1.rc2.fc39.aarch64                  115/152 
  Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64               116/152 
  Installing       : authselect-libs-1.4.2-3.fc39.aarch64               116/152 
  Installing       : gzip-1.12-6.fc39.aarch64                           117/152 
  Installing       : cracklib-2.9.11-2.fc40.aarch64                     118/152 
  Installing       : libpwquality-1.4.5-6.fc39.aarch64                  119/152 
  Installing       : authselect-1.4.2-3.fc39.aarch64                    120/152 
  Installing       : libnsl2-2.0.0-6.fc39.aarch64                       121/152 
  Installing       : pam-1.5.3-2.fc39.aarch64                           122/152 
  Installing       : libarchive-3.7.2-1.fc40.aarch64                    123/152 
  Installing       : libevent-2.1.12-9.fc39.aarch64                     124/152 
  Installing       : openldap-2.6.6-1.fc39.aarch64                      125/152 
  Installing       : rpm-sequoia-1.5.0-1.fc40.aarch64                   126/152 
  Installing       : rpm-libs-4.19.0-1.fc40.aarch64                     127/152 
  Installing       : ansible-srpm-macros-1-11.fc39.noarch               128/152 
  Installing       : libssh-config-0.10.5-2.fc40.noarch                 129/152 
  Installing       : libssh-0.10.5-2.fc40.aarch64                       130/152 
  Installing       : libcurl-8.3.0-1.fc40.aarch64                       131/152 
  Installing       : elfutils-libs-0.189-6.fc40.aarch64                 132/152 
  Installing       : elfutils-debuginfod-client-0.189-6.fc40.aarch64    133/152 
  Installing       : binutils-gold-2.41-5.fc40.aarch64                  134/152 
  Running scriptlet: binutils-gold-2.41-5.fc40.aarch64                  134/152 
  Installing       : binutils-2.41-5.fc40.aarch64                       135/152 
  Running scriptlet: binutils-2.41-5.fc40.aarch64                       135/152 
  Installing       : elfutils-0.189-6.fc40.aarch64                      136/152 
  Installing       : gdb-minimal-13.2-9.fc40.aarch64                    137/152 
  Installing       : debugedit-5.0-10.fc39.aarch64                      138/152 
  Installing       : rpm-build-libs-4.19.0-1.fc40.aarch64               139/152 
  Installing       : curl-8.3.0-1.fc40.aarch64                          140/152 
  Running scriptlet: rpm-4.19.0-1.fc40.aarch64                          141/152 
  Installing       : rpm-4.19.0-1.fc40.aarch64                          141/152 
  Installing       : efi-srpm-macros-5-9.fc39.noarch                    142/152 
  Installing       : lua-srpm-macros-1-9.fc39.noarch                    143/152 
  Installing       : fonts-srpm-macros-1:2.0.5-12.fc39.noarch           144/152 
  Installing       : forge-srpm-macros-0.1.0-1.fc40.noarch              145/152 
  Installing       : go-srpm-macros-3.2.0-7.fc40.noarch                 146/152 
  Installing       : python-srpm-macros-3.12-4.fc40.noarch              147/152 
  Installing       : redhat-rpm-config-270-1.fc40.noarch                148/152 
  Installing       : rpm-build-4.19.0-1.fc40.aarch64                    149/152 
  Installing       : util-linux-2.39.2-1.fc40.aarch64                   150/152 
  Installing       : which-2.21-40.fc39.aarch64                         151/152 
  Installing       : info-7.0.3-3.fc39.aarch64                          152/152 
  Running scriptlet: filesystem-3.18-6.fc39.aarch64                     152/152 
  Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch   152/152 
  Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64               152/152 
  Running scriptlet: rpm-4.19.0-1.fc40.aarch64                          152/152 
  Running scriptlet: info-7.0.3-3.fc39.aarch64                          152/152 
  Verifying        : cracklib-2.9.11-2.fc40.aarch64                       1/152 
  Verifying        : curl-8.3.0-1.fc40.aarch64                            2/152 
  Verifying        : cyrus-sasl-lib-2.1.28-11.fc40.aarch64                3/152 
  Verifying        : file-5.45-1.fc40.aarch64                             4/152 
  Verifying        : file-libs-5.45-1.fc40.aarch64                        5/152 
  Verifying        : libarchive-3.7.2-1.fc40.aarch64                      6/152 
  Verifying        : libblkid-2.39.2-1.fc40.aarch64                       7/152 
  Verifying        : libcurl-8.3.0-1.fc40.aarch64                         8/152 
  Verifying        : libdb-5.3.28-58.fc40.aarch64                         9/152 
  Verifying        : libfdisk-2.39.2-1.fc40.aarch64                      10/152 
  Verifying        : libmount-2.39.2-1.fc40.aarch64                      11/152 
  Verifying        : libnghttp2-1.56.0-1.fc40.aarch64                    12/152 
  Verifying        : libsmartcols-2.39.2-1.fc40.aarch64                  13/152 
  Verifying        : libssh-0.10.5-2.fc40.aarch64                        14/152 
  Verifying        : libssh-config-0.10.5-2.fc40.noarch                  15/152 
  Verifying        : libuuid-2.39.2-1.fc40.aarch64                       16/152 
  Verifying        : libxml2-2.11.5-1.fc40.aarch64                       17/152 
  Verifying        : libzstd-1.5.5-4.fc40.aarch64                        18/152 
  Verifying        : openssl-libs-1:3.1.1-4.fc40.aarch64                 19/152 
  Verifying        : redhat-rpm-config-270-1.fc40.noarch                 20/152 
  Verifying        : util-linux-2.39.2-1.fc40.aarch64                    21/152 
  Verifying        : util-linux-core-2.39.2-1.fc40.aarch64               22/152 
  Verifying        : zlib-ng-compat-2.1.3-5.fc40.aarch64                 23/152 
  Verifying        : zstd-1.5.5-4.fc40.aarch64                           24/152 
  Verifying        : alternatives-1.25-1.fc39.aarch64                    25/152 
  Verifying        : ansible-srpm-macros-1-11.fc39.noarch                26/152 
  Verifying        : audit-libs-3.1.2-4.fc40.aarch64                     27/152 
  Verifying        : authselect-1.4.2-3.fc39.aarch64                     28/152 
  Verifying        : authselect-libs-1.4.2-3.fc39.aarch64                29/152 
  Verifying        : basesystem-11-18.fc39.noarch                        30/152 
  Verifying        : bash-5.2.15-5.fc39.aarch64                          31/152 
  Verifying        : binutils-2.41-5.fc40.aarch64                        32/152 
  Verifying        : binutils-gold-2.41-5.fc40.aarch64                   33/152 
  Verifying        : bzip2-1.0.8-16.fc39.aarch64                         34/152 
  Verifying        : bzip2-libs-1.0.8-16.fc39.aarch64                    35/152 
  Verifying        : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch    36/152 
  Verifying        : coreutils-9.4-1.fc40.aarch64                        37/152 
  Verifying        : coreutils-common-9.4-1.fc40.aarch64                 38/152 
  Verifying        : cpio-2.14-4.fc39.aarch64                            39/152 
  Verifying        : crypto-policies-20230920-1.git570ea89.fc40.noarc    40/152 
  Verifying        : debugedit-5.0-10.fc39.aarch64                       41/152 
  Verifying        : diffutils-3.10-3.fc39.aarch64                       42/152 
  Verifying        : dwz-0.15-3.fc39.aarch64                             43/152 
  Verifying        : ed-1.19-4.fc39.aarch64                              44/152 
  Verifying        : efi-srpm-macros-5-9.fc39.noarch                     45/152 
  Verifying        : elfutils-0.189-6.fc40.aarch64                       46/152 
  Verifying        : elfutils-debuginfod-client-0.189-6.fc40.aarch64     47/152 
  Verifying        : elfutils-default-yama-scope-0.189-6.fc40.noarch     48/152 
  Verifying        : elfutils-libelf-0.189-6.fc40.aarch64                49/152 
  Verifying        : elfutils-libs-0.189-6.fc40.aarch64                  50/152 
  Verifying        : fedora-gpg-keys-40-0.1.noarch                       51/152 
  Verifying        : fedora-release-40-0.8.noarch                        52/152 
  Verifying        : fedora-release-common-40-0.8.noarch                 53/152 
  Verifying        : fedora-release-identity-basic-40-0.8.noarch         54/152 
  Verifying        : fedora-repos-40-0.1.noarch                          55/152 
  Verifying        : fedora-repos-rawhide-40-0.1.noarch                  56/152 
  Verifying        : filesystem-3.18-6.fc39.aarch64                      57/152 
  Verifying        : findutils-1:4.9.0-6.fc40.aarch64                    58/152 
  Verifying        : fonts-srpm-macros-1:2.0.5-12.fc39.noarch            59/152 
  Verifying        : forge-srpm-macros-0.1.0-1.fc40.noarch               60/152 
  Verifying        : fpc-srpm-macros-1.3-8.fc39.noarch                   61/152 
  Verifying        : gawk-5.2.2-2.fc39.aarch64                           62/152 
  Verifying        : gdb-minimal-13.2-9.fc40.aarch64                     63/152 
  Verifying        : gdbm-libs-1:1.23-4.fc39.aarch64                     64/152 
  Verifying        : ghc-srpm-macros-1.6.1-3.fc40.noarch                 65/152 
  Verifying        : glibc-2.38.9000-9.fc40.aarch64                      66/152 
  Verifying        : glibc-common-2.38.9000-9.fc40.aarch64               67/152 
  Verifying        : glibc-gconv-extra-2.38.9000-9.fc40.aarch64          68/152 
  Verifying        : glibc-minimal-langpack-2.38.9000-9.fc40.aarch64     69/152 
  Verifying        : gmp-1:6.2.1-5.fc39.aarch64                          70/152 
  Verifying        : gnat-srpm-macros-6-3.fc39.noarch                    71/152 
  Verifying        : go-srpm-macros-3.2.0-7.fc40.noarch                  72/152 
  Verifying        : grep-3.11-5.fc40.aarch64                            73/152 
  Verifying        : gzip-1.12-6.fc39.aarch64                            74/152 
  Verifying        : info-7.0.3-3.fc39.aarch64                           75/152 
  Verifying        : jansson-2.13.1-7.fc39.aarch64                       76/152 
  Verifying        : kernel-srpm-macros-1.0-20.fc39.noarch               77/152 
  Verifying        : keyutils-libs-1.6.1-7.fc39.aarch64                  78/152 
  Verifying        : krb5-libs-1.21.2-1.fc40.aarch64                     79/152 
  Verifying        : libacl-2.3.1-9.fc40.aarch64                         80/152 
  Verifying        : libattr-2.5.1-9.fc40.aarch64                        81/152 
  Verifying        : libbrotli-1.1.0-1.fc40.aarch64                      82/152 
  Verifying        : libcap-2.48-7.fc39.aarch64                          83/152 
  Verifying        : libcap-ng-0.8.3-8.fc40.aarch64                      84/152 
  Verifying        : libcom_err-1.47.0-2.fc39.aarch64                    85/152 
  Verifying        : libeconf-0.5.2-1.fc40.aarch64                       86/152 
  Verifying        : libevent-2.1.12-9.fc39.aarch64                      87/152 
  Verifying        : libffi-3.4.4-4.fc39.aarch64                         88/152 
  Verifying        : libgcc-13.2.1-3.fc40.aarch64                        89/152 
  Verifying        : libgomp-13.2.1-3.fc40.aarch64                       90/152 
  Verifying        : libidn2-2.3.4-3.fc39.aarch64                        91/152 
  Verifying        : libnsl2-2.0.0-6.fc39.aarch64                        92/152 
  Verifying        : libpkgconf-1.9.5-2.fc39.aarch64                     93/152 
  Verifying        : libpsl-0.21.2-4.fc39.aarch64                        94/152 
  Verifying        : libpwquality-1.4.5-6.fc39.aarch64                   95/152 
  Verifying        : libselinux-3.5-5.fc39.aarch64                       96/152 
  Verifying        : libsemanage-3.5-4.fc39.aarch64                      97/152 
  Verifying        : libsepol-3.5-2.fc39.aarch64                         98/152 
  Verifying        : libsigsegv-2.14-5.fc39.aarch64                      99/152 
  Verifying        : libstdc++-13.2.1-3.fc40.aarch64                    100/152 
  Verifying        : libtasn1-4.19.0-3.fc39.aarch64                     101/152 
  Verifying        : libtirpc-1.3.3-1.rc2.fc39.aarch64                  102/152 
  Verifying        : libunistring-1.1-5.fc40.aarch64                    103/152 
  Verifying        : libutempter-1.2.1-10.fc39.aarch64                  104/152 
  Verifying        : libverto-0.3.2-6.fc39.aarch64                      105/152 
  Verifying        : libxcrypt-4.4.36-2.fc39.aarch64                    106/152 
  Verifying        : lua-libs-5.4.6-3.fc39.aarch64                      107/152 
  Verifying        : lua-srpm-macros-1-9.fc39.noarch                    108/152 
  Verifying        : lz4-libs-1.9.4-4.fc39.aarch64                      109/152 
  Verifying        : mpfr-4.2.0-3.fc39.aarch64                          110/152 
  Verifying        : ncurses-base-6.4-7.20230520.fc40.noarch            111/152 
  Verifying        : ncurses-libs-6.4-7.20230520.fc40.aarch64           112/152 
  Verifying        : ocaml-srpm-macros-8-2.fc39.noarch                  113/152 
  Verifying        : openblas-srpm-macros-2-14.fc39.noarch              114/152 
  Verifying        : openldap-2.6.6-1.fc39.aarch64                      115/152 
  Verifying        : p11-kit-0.25.0-2.fc39.aarch64                      116/152 
  Verifying        : p11-kit-trust-0.25.0-2.fc39.aarch64                117/152 
  Verifying        : package-notes-srpm-macros-0.5-9.fc39.noarch        118/152 
  Verifying        : pam-1.5.3-2.fc39.aarch64                           119/152 
  Verifying        : pam-libs-1.5.3-2.fc39.aarch64                      120/152 
  Verifying        : patch-2.7.6-22.fc39.aarch64                        121/152 
  Verifying        : pcre2-10.42-1.fc39.2.aarch64                       122/152 
  Verifying        : pcre2-syntax-10.42-1.fc39.2.noarch                 123/152 
  Verifying        : perl-srpm-macros-1-51.fc39.noarch                  124/152 
  Verifying        : pkgconf-1.9.5-2.fc39.aarch64                       125/152 
  Verifying        : pkgconf-m4-1.9.5-2.fc39.noarch                     126/152 
  Verifying        : pkgconf-pkg-config-1.9.5-2.fc39.aarch64            127/152 
  Verifying        : popt-1.19-3.fc39.aarch64                           128/152 
  Verifying        : publicsuffix-list-dafsa-20230812-1.fc40.noarch     129/152 
  Verifying        : pyproject-srpm-macros-1.9.0-2.fc39.noarch          130/152 
  Verifying        : python-srpm-macros-3.12-4.fc40.noarch              131/152 
  Verifying        : qt5-srpm-macros-5.15.10-2.fc39.noarch              132/152 
  Verifying        : qt6-srpm-macros-6.5.2-3.fc40.noarch                133/152 
  Verifying        : readline-8.2-4.fc39.aarch64                        134/152 
  Verifying        : rpm-4.19.0-1.fc40.aarch64                          135/152 
  Verifying        : rpm-build-4.19.0-1.fc40.aarch64                    136/152 
  Verifying        : rpm-build-libs-4.19.0-1.fc40.aarch64               137/152 
  Verifying        : rpm-libs-4.19.0-1.fc40.aarch64                     138/152 
  Verifying        : rpm-sequoia-1.5.0-1.fc40.aarch64                   139/152 
  Verifying        : rust-srpm-macros-24-5.fc40.noarch                  140/152 
  Verifying        : sed-4.8-14.fc39.aarch64                            141/152 
  Verifying        : setup-2.14.4-1.fc39.noarch                         142/152 
  Verifying        : shadow-utils-2:4.14.0-1.fc40.aarch64               143/152 
  Verifying        : sqlite-libs-3.43.1-1.fc40.aarch64                  144/152 
  Verifying        : systemd-libs-254.2-12.fc40.aarch64                 145/152 
  Verifying        : tar-2:1.35-2.fc40.aarch64                          146/152 
  Verifying        : unzip-6.0-62.fc39.aarch64                          147/152 
  Verifying        : which-2.21-40.fc39.aarch64                         148/152 
  Verifying        : xxhash-libs-0.8.2-1.fc39.aarch64                   149/152 
  Verifying        : xz-5.4.4-1.fc39.aarch64                            150/152 
  Verifying        : xz-libs-5.4.4-1.fc39.aarch64                       151/152 
  Verifying        : zip-3.0-39.fc40.aarch64                            152/152 

Installed:
  alternatives-1.25-1.fc39.aarch64                                              
  ansible-srpm-macros-1-11.fc39.noarch                                          
  audit-libs-3.1.2-4.fc40.aarch64                                               
  authselect-1.4.2-3.fc39.aarch64                                               
  authselect-libs-1.4.2-3.fc39.aarch64                                          
  basesystem-11-18.fc39.noarch                                                  
  bash-5.2.15-5.fc39.aarch64                                                    
  binutils-2.41-5.fc40.aarch64                                                  
  binutils-gold-2.41-5.fc40.aarch64                                             
  bzip2-1.0.8-16.fc39.aarch64                                                   
  bzip2-libs-1.0.8-16.fc39.aarch64                                              
  ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch                              
  coreutils-9.4-1.fc40.aarch64                                                  
  coreutils-common-9.4-1.fc40.aarch64                                           
  cpio-2.14-4.fc39.aarch64                                                      
  cracklib-2.9.11-2.fc40.aarch64                                                
  crypto-policies-20230920-1.git570ea89.fc40.noarch                             
  curl-8.3.0-1.fc40.aarch64                                                     
  cyrus-sasl-lib-2.1.28-11.fc40.aarch64                                         
  debugedit-5.0-10.fc39.aarch64                                                 
  diffutils-3.10-3.fc39.aarch64                                                 
  dwz-0.15-3.fc39.aarch64                                                       
  ed-1.19-4.fc39.aarch64                                                        
  efi-srpm-macros-5-9.fc39.noarch                                               
  elfutils-0.189-6.fc40.aarch64                                                 
  elfutils-debuginfod-client-0.189-6.fc40.aarch64                               
  elfutils-default-yama-scope-0.189-6.fc40.noarch                               
  elfutils-libelf-0.189-6.fc40.aarch64                                          
  elfutils-libs-0.189-6.fc40.aarch64                                            
  fedora-gpg-keys-40-0.1.noarch                                                 
  fedora-release-40-0.8.noarch                                                  
  fedora-release-common-40-0.8.noarch                                           
  fedora-release-identity-basic-40-0.8.noarch                                   
  fedora-repos-40-0.1.noarch                                                    
  fedora-repos-rawhide-40-0.1.noarch                                            
  file-5.45-1.fc40.aarch64                                                      
  file-libs-5.45-1.fc40.aarch64                                                 
  filesystem-3.18-6.fc39.aarch64                                                
  findutils-1:4.9.0-6.fc40.aarch64                                              
  fonts-srpm-macros-1:2.0.5-12.fc39.noarch                                      
  forge-srpm-macros-0.1.0-1.fc40.noarch                                         
  fpc-srpm-macros-1.3-8.fc39.noarch                                             
  gawk-5.2.2-2.fc39.aarch64                                                     
  gdb-minimal-13.2-9.fc40.aarch64                                               
  gdbm-libs-1:1.23-4.fc39.aarch64                                               
  ghc-srpm-macros-1.6.1-3.fc40.noarch                                           
  glibc-2.38.9000-9.fc40.aarch64                                                
  glibc-common-2.38.9000-9.fc40.aarch64                                         
  glibc-gconv-extra-2.38.9000-9.fc40.aarch64                                    
  glibc-minimal-langpack-2.38.9000-9.fc40.aarch64                               
  gmp-1:6.2.1-5.fc39.aarch64                                                    
  gnat-srpm-macros-6-3.fc39.noarch                                              
  go-srpm-macros-3.2.0-7.fc40.noarch                                            
  grep-3.11-5.fc40.aarch64                                                      
  gzip-1.12-6.fc39.aarch64                                                      
  info-7.0.3-3.fc39.aarch64                                                     
  jansson-2.13.1-7.fc39.aarch64                                                 
  kernel-srpm-macros-1.0-20.fc39.noarch                                         
  keyutils-libs-1.6.1-7.fc39.aarch64                                            
  krb5-libs-1.21.2-1.fc40.aarch64                                               
  libacl-2.3.1-9.fc40.aarch64                                                   
  libarchive-3.7.2-1.fc40.aarch64                                               
  libattr-2.5.1-9.fc40.aarch64                                                  
  libblkid-2.39.2-1.fc40.aarch64                                                
  libbrotli-1.1.0-1.fc40.aarch64                                                
  libcap-2.48-7.fc39.aarch64                                                    
  libcap-ng-0.8.3-8.fc40.aarch64                                                
  libcom_err-1.47.0-2.fc39.aarch64                                              
  libcurl-8.3.0-1.fc40.aarch64                                                  
  libdb-5.3.28-58.fc40.aarch64                                                  
  libeconf-0.5.2-1.fc40.aarch64                                                 
  libevent-2.1.12-9.fc39.aarch64                                                
  libfdisk-2.39.2-1.fc40.aarch64                                                
  libffi-3.4.4-4.fc39.aarch64                                                   
  libgcc-13.2.1-3.fc40.aarch64                                                  
  libgomp-13.2.1-3.fc40.aarch64                                                 
  libidn2-2.3.4-3.fc39.aarch64                                                  
  libmount-2.39.2-1.fc40.aarch64                                                
  libnghttp2-1.56.0-1.fc40.aarch64                                              
  libnsl2-2.0.0-6.fc39.aarch64                                                  
  libpkgconf-1.9.5-2.fc39.aarch64                                               
  libpsl-0.21.2-4.fc39.aarch64                                                  
  libpwquality-1.4.5-6.fc39.aarch64                                             
  libselinux-3.5-5.fc39.aarch64                                                 
  libsemanage-3.5-4.fc39.aarch64                                                
  libsepol-3.5-2.fc39.aarch64                                                   
  libsigsegv-2.14-5.fc39.aarch64                                                
  libsmartcols-2.39.2-1.fc40.aarch64                                            
  libssh-0.10.5-2.fc40.aarch64                                                  
  libssh-config-0.10.5-2.fc40.noarch                                            
  libstdc++-13.2.1-3.fc40.aarch64                                               
  libtasn1-4.19.0-3.fc39.aarch64                                                
  libtirpc-1.3.3-1.rc2.fc39.aarch64                                             
  libunistring-1.1-5.fc40.aarch64                                               
  libutempter-1.2.1-10.fc39.aarch64                                             
  libuuid-2.39.2-1.fc40.aarch64                                                 
  libverto-0.3.2-6.fc39.aarch64                                                 
  libxcrypt-4.4.36-2.fc39.aarch64                                               
  libxml2-2.11.5-1.fc40.aarch64                                                 
  libzstd-1.5.5-4.fc40.aarch64                                                  
  lua-libs-5.4.6-3.fc39.aarch64                                                 
  lua-srpm-macros-1-9.fc39.noarch                                               
  lz4-libs-1.9.4-4.fc39.aarch64                                                 
  mpfr-4.2.0-3.fc39.aarch64                                                     
  ncurses-base-6.4-7.20230520.fc40.noarch                                       
  ncurses-libs-6.4-7.20230520.fc40.aarch64                                      
  ocaml-srpm-macros-8-2.fc39.noarch                                             
  openblas-srpm-macros-2-14.fc39.noarch                                         
  openldap-2.6.6-1.fc39.aarch64                                                 
  openssl-libs-1:3.1.1-4.fc40.aarch64                                           
  p11-kit-0.25.0-2.fc39.aarch64                                                 
  p11-kit-trust-0.25.0-2.fc39.aarch64                                           
  package-notes-srpm-macros-0.5-9.fc39.noarch                                   
  pam-1.5.3-2.fc39.aarch64                                                      
  pam-libs-1.5.3-2.fc39.aarch64                                                 
  patch-2.7.6-22.fc39.aarch64                                                   
  pcre2-10.42-1.fc39.2.aarch64                                                  
  pcre2-syntax-10.42-1.fc39.2.noarch                                            
  perl-srpm-macros-1-51.fc39.noarch                                             
  pkgconf-1.9.5-2.fc39.aarch64                                                  
  pkgconf-m4-1.9.5-2.fc39.noarch                                                
  pkgconf-pkg-config-1.9.5-2.fc39.aarch64                                       
  popt-1.19-3.fc39.aarch64                                                      
  publicsuffix-list-dafsa-20230812-1.fc40.noarch                                
  pyproject-srpm-macros-1.9.0-2.fc39.noarch                                     
  python-srpm-macros-3.12-4.fc40.noarch                                         
  qt5-srpm-macros-5.15.10-2.fc39.noarch                                         
  qt6-srpm-macros-6.5.2-3.fc40.noarch                                           
  readline-8.2-4.fc39.aarch64                                                   
  redhat-rpm-config-270-1.fc40.noarch                                           
  rpm-4.19.0-1.fc40.aarch64                                                     
  rpm-build-4.19.0-1.fc40.aarch64                                               
  rpm-build-libs-4.19.0-1.fc40.aarch64                                          
  rpm-libs-4.19.0-1.fc40.aarch64                                                
  rpm-sequoia-1.5.0-1.fc40.aarch64                                              
  rust-srpm-macros-24-5.fc40.noarch                                             
  sed-4.8-14.fc39.aarch64                                                       
  setup-2.14.4-1.fc39.noarch                                                    
  shadow-utils-2:4.14.0-1.fc40.aarch64                                          
  sqlite-libs-3.43.1-1.fc40.aarch64                                             
  systemd-libs-254.2-12.fc40.aarch64                                            
  tar-2:1.35-2.fc40.aarch64                                                     
  unzip-6.0-62.fc39.aarch64                                                     
  util-linux-2.39.2-1.fc40.aarch64                                              
  util-linux-core-2.39.2-1.fc40.aarch64                                         
  which-2.21-40.fc39.aarch64                                                    
  xxhash-libs-0.8.2-1.fc39.aarch64                                              
  xz-5.4.4-1.fc39.aarch64                                                       
  xz-libs-5.4.4-1.fc39.aarch64                                                  
  zip-3.0-39.fc40.aarch64                                                       
  zlib-ng-compat-2.1.3-5.fc40.aarch64                                           
  zstd-1.5.5-4.fc40.aarch64                                                     

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.aarch64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.aarch64
authselect-1.4.2-3.fc39.aarch64
authselect-libs-1.4.2-3.fc39.aarch64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.aarch64
binutils-2.41-5.fc40.aarch64
binutils-gold-2.41-5.fc40.aarch64
bzip2-1.0.8-16.fc39.aarch64
bzip2-libs-1.0.8-16.fc39.aarch64
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.aarch64
coreutils-common-9.4-1.fc40.aarch64
cpio-2.14-4.fc39.aarch64
cracklib-2.9.11-2.fc40.aarch64
crypto-policies-20230920-1.git570ea89.fc40.noarch
curl-8.3.0-1.fc40.aarch64
cyrus-sasl-lib-2.1.28-11.fc40.aarch64
debugedit-5.0-10.fc39.aarch64
diffutils-3.10-3.fc39.aarch64
dwz-0.15-3.fc39.aarch64
ed-1.19-4.fc39.aarch64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.aarch64
elfutils-debuginfod-client-0.189-6.fc40.aarch64
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.aarch64
elfutils-libs-0.189-6.fc40.aarch64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.8.noarch
fedora-release-common-40-0.8.noarch
fedora-release-identity-basic-40-0.8.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.aarch64
file-libs-5.45-1.fc40.aarch64
filesystem-3.18-6.fc39.aarch64
findutils-4.9.0-6.fc40.aarch64
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.aarch64
gdb-minimal-13.2-9.fc40.aarch64
gdbm-libs-1.23-4.fc39.aarch64
ghc-srpm-macros-1.6.1-3.fc40.noarch
glibc-2.38.9000-9.fc40.aarch64
glibc-common-2.38.9000-9.fc40.aarch64
glibc-gconv-extra-2.38.9000-9.fc40.aarch64
glibc-minimal-langpack-2.38.9000-9.fc40.aarch64
gmp-6.2.1-5.fc39.aarch64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.aarch64
gzip-1.12-6.fc39.aarch64
info-7.0.3-3.fc39.aarch64
jansson-2.13.1-7.fc39.aarch64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.aarch64
krb5-libs-1.21.2-1.fc40.aarch64
libacl-2.3.1-9.fc40.aarch64
libarchive-3.7.2-1.fc40.aarch64
libattr-2.5.1-9.fc40.aarch64
libblkid-2.39.2-1.fc40.aarch64
libbrotli-1.1.0-1.fc40.aarch64
libcap-2.48-7.fc39.aarch64
libcap-ng-0.8.3-8.fc40.aarch64
libcom_err-1.47.0-2.fc39.aarch64
libcurl-8.3.0-1.fc40.aarch64
libdb-5.3.28-58.fc40.aarch64
libeconf-0.5.2-1.fc40.aarch64
libevent-2.1.12-9.fc39.aarch64
libfdisk-2.39.2-1.fc40.aarch64
libffi-3.4.4-4.fc39.aarch64
libgcc-13.2.1-3.fc40.aarch64
libgomp-13.2.1-3.fc40.aarch64
libidn2-2.3.4-3.fc39.aarch64
libmount-2.39.2-1.fc40.aarch64
libnghttp2-1.56.0-1.fc40.aarch64
libnsl2-2.0.0-6.fc39.aarch64
libpkgconf-1.9.5-2.fc39.aarch64
libpsl-0.21.2-4.fc39.aarch64
libpwquality-1.4.5-6.fc39.aarch64
libselinux-3.5-5.fc39.aarch64
libsemanage-3.5-4.fc39.aarch64
libsepol-3.5-2.fc39.aarch64
libsigsegv-2.14-5.fc39.aarch64
libsmartcols-2.39.2-1.fc40.aarch64
libssh-0.10.5-2.fc40.aarch64
libssh-config-0.10.5-2.fc40.noarch
libstdc++-13.2.1-3.fc40.aarch64
libtasn1-4.19.0-3.fc39.aarch64
libtirpc-1.3.3-1.rc2.fc39.aarch64
libunistring-1.1-5.fc40.aarch64
libutempter-1.2.1-10.fc39.aarch64
libuuid-2.39.2-1.fc40.aarch64
libverto-0.3.2-6.fc39.aarch64
libxcrypt-4.4.36-2.fc39.aarch64
libxml2-2.11.5-1.fc40.aarch64
libzstd-1.5.5-4.fc40.aarch64
lua-libs-5.4.6-3.fc39.aarch64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.aarch64
mpfr-4.2.0-3.fc39.aarch64
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.aarch64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.aarch64
openssl-libs-3.1.1-4.fc40.aarch64
p11-kit-0.25.0-2.fc39.aarch64
p11-kit-trust-0.25.0-2.fc39.aarch64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.aarch64
pam-libs-1.5.3-2.fc39.aarch64
patch-2.7.6-22.fc39.aarch64
pcre2-10.42-1.fc39.2.aarch64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.aarch64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.aarch64
popt-1.19-3.fc39.aarch64
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-3.fc40.noarch
readline-8.2-4.fc39.aarch64
redhat-rpm-config-270-1.fc40.noarch
rpm-4.19.0-1.fc40.aarch64
rpm-build-4.19.0-1.fc40.aarch64
rpm-build-libs-4.19.0-1.fc40.aarch64
rpm-libs-4.19.0-1.fc40.aarch64
rpm-sequoia-1.5.0-1.fc40.aarch64
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.aarch64
setup-2.14.4-1.fc39.noarch
shadow-utils-4.14.0-1.fc40.aarch64
sqlite-libs-3.43.1-1.fc40.aarch64
systemd-libs-254.2-12.fc40.aarch64
tar-1.35-2.fc40.aarch64
unzip-6.0-62.fc39.aarch64
util-linux-2.39.2-1.fc40.aarch64
util-linux-core-2.39.2-1.fc40.aarch64
which-2.21-40.fc39.aarch64
xxhash-libs-0.8.2-1.fc39.aarch64
xz-5.4.4-1.fc39.aarch64
xz-libs-5.4.4-1.fc39.aarch64
zip-3.0-39.fc40.aarch64
zlib-ng-compat-2.1.3-5.fc40.aarch64
zstd-1.5.5-4.fc40.aarch64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1692316800
Wrote: /builddir/build/SRPMS/smoldyn-2.72-2.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-mmbu6r54/smoldyn/smoldyn.spec) Config(child) 0 minutes 49 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.72-2.fc40.src.rpm)  Config(fedora-rawhide-aarch64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695459271.609342/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695459271.609342/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.0-1.fc40.aarch64
  rpm-sequoia-1.5.0-1.fc40.aarch64
  python3-dnf-4.17.0-6.fc40.noarch
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch
  yum-4.17.0-6.fc40.noarch
Start: build phase for smoldyn-2.72-2.fc40.src.rpm
Start: build setup for smoldyn-2.72-2.fc40.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1692316800
Wrote: /builddir/build/SRPMS/smoldyn-2.72-2.fc40.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  61 kB/s | 1.5 kB     00:00    
fedora                                          210 kB/s |  11 kB     00:00    
Dependencies resolved.
================================================================================
 Package                       Arch    Version                  Repo       Size
================================================================================
Installing:
 boost-devel                   aarch64 1.81.0-6.fc40            copr_base  12 M
 cmake                         aarch64 3.27.4-8.fc40            fedora    7.4 M
 freeglut-devel                aarch64 3.4.0-4.fc39             fedora    945 k
 gcc                           aarch64 13.2.1-3.fc40            fedora     31 M
 gcc-c++                       aarch64 13.2.1-3.fc40            fedora     12 M
 libXi-devel                   aarch64 1.8.1-3.fc40             fedora    116 k
 libXmu-devel                  aarch64 1.1.4-4.fc40             fedora     27 k
 libglvnd-devel                aarch64 1:1.7.0-1.fc40           fedora    162 k
 libtiff-devel                 aarch64 4.4.0-8.fc40             copr_base 513 k
 make                          aarch64 1:4.4.1-2.fc39           fedora    585 k
 perl-macros                   noarch  4:5.38.0-500.fc40        copr_base  13 k
 pybind11-devel                aarch64 2.11.1-1.fc39            fedora    176 k
 python3-devel                 aarch64 3.12.0~rc3-1.fc40        fedora    311 k
 python3-flaky                 noarch  3.7.0-12.fc39            fedora     45 k
 python3-matplotlib            aarch64 3.8.0-1.fc40             fedora    4.4 M
 python3-setuptools            noarch  67.7.2-7.fc40            fedora    1.5 M
 python3-wheel                 noarch  1:0.40.0-4.fc39          fedora    161 k
 xorg-x11-server-Xvfb          aarch64 1.20.14-24.fc39          fedora    879 k
 zlib-ng-compat-devel          aarch64 2.1.3-5.fc40             copr_base  34 k
Installing dependencies:
 abattis-cantarell-vf-fonts    noarch  0.301-10.fc39            fedora    121 k
 annobin-docs                  noarch  12.26-1.fc40             fedora     94 k
 annobin-plugin-gcc            aarch64 12.26-1.fc40             fedora    958 k
 boost                         aarch64 1.81.0-6.fc40            copr_base  15 k
 boost-atomic                  aarch64 1.81.0-6.fc40            copr_base  20 k
 boost-chrono                  aarch64 1.81.0-6.fc40            copr_base  26 k
 boost-container               aarch64 1.81.0-6.fc40            copr_base  40 k
 boost-context                 aarch64 1.81.0-6.fc40            copr_base  18 k
 boost-contract                aarch64 1.81.0-6.fc40            copr_base  44 k
 boost-coroutine               aarch64 1.81.0-6.fc40            copr_base  21 k
 boost-date-time               aarch64 1.81.0-6.fc40            copr_base  17 k
 boost-fiber                   aarch64 1.81.0-6.fc40            copr_base  43 k
 boost-filesystem              aarch64 1.81.0-6.fc40            copr_base  64 k
 boost-graph                   aarch64 1.81.0-6.fc40            copr_base 144 k
 boost-iostreams               aarch64 1.81.0-6.fc40            copr_base  41 k
 boost-json                    aarch64 1.81.0-6.fc40            copr_base 108 k
 boost-locale                  aarch64 1.81.0-6.fc40            copr_base 207 k
 boost-log                     aarch64 1.81.0-6.fc40            copr_base 460 k
 boost-math                    aarch64 1.81.0-6.fc40            copr_base 260 k
 boost-nowide                  aarch64 1.81.0-6.fc40            copr_base  22 k
 boost-numpy3                  aarch64 1.81.0-6.fc40            copr_base  30 k
 boost-program-options         aarch64 1.81.0-6.fc40            copr_base 106 k
 boost-python3                 aarch64 1.81.0-6.fc40            copr_base  90 k
 boost-random                  aarch64 1.81.0-6.fc40            copr_base  25 k
 boost-regex                   aarch64 1.81.0-6.fc40            copr_base 109 k
 boost-serialization           aarch64 1.81.0-6.fc40            copr_base 129 k
 boost-stacktrace              aarch64 1.81.0-6.fc40            copr_base  31 k
 boost-system                  aarch64 1.81.0-6.fc40            copr_base  17 k
 boost-test                    aarch64 1.81.0-6.fc40            copr_base 228 k
 boost-thread                  aarch64 1.81.0-6.fc40            copr_base  57 k
 boost-timer                   aarch64 1.81.0-6.fc40            copr_base  25 k
 boost-type_erasure            aarch64 1.81.0-6.fc40            copr_base  33 k
 boost-wave                    aarch64 1.81.0-6.fc40            copr_base 222 k
 cairo                         aarch64 1.17.8-5.fc40            copr_base 689 k
 cmake-data                    noarch  3.27.4-8.fc40            fedora    2.2 M
 cmake-filesystem              aarch64 3.27.4-8.fc40            fedora     19 k
 cmake-rpm-macros              noarch  3.27.4-8.fc40            fedora     18 k
 cpp                           aarch64 13.2.1-3.fc40            fedora    9.7 M
 default-fonts-core-sans       noarch  4.0-9.fc40               fedora     32 k
 dejavu-sans-fonts             noarch  2.37-20.fc38             fedora    1.3 M
 emacs-filesystem              noarch  1:29.1-1.fc40            copr_base 8.9 k
 expat                         aarch64 2.5.0-3.fc39             fedora    108 k
 flexiblas                     aarch64 3.3.1-5.fc39             fedora     33 k
 flexiblas-netlib              aarch64 3.3.1-5.fc39             fedora    2.6 M
 flexiblas-openblas-openmp     aarch64 3.3.1-5.fc39             fedora     16 k
 fontconfig                    aarch64 2.14.2-5.fc40            fedora    301 k
 fonts-filesystem              noarch  1:2.0.5-12.fc39          fedora    8.2 k
 freeglut                      aarch64 3.4.0-4.fc39             fedora    152 k
 freetype                      aarch64 2.13.1-2.fc40            copr_base 406 k
 fribidi                       aarch64 1.0.13-2.fc39            fedora     91 k
 gc                            aarch64 8.2.2-4.fc39             fedora    110 k
 gcc-plugin-annobin            aarch64 13.2.1-3.fc40            fedora     48 k
 gl-manpages                   noarch  1.1-29.20190306.fc40     fedora    1.2 M
 glib2                         aarch64 2.78.0-2.fc40            fedora    2.8 M
 glibc-devel                   aarch64 2.38.9000-9.fc40         fedora    582 k
 gnutls                        aarch64 3.8.1-1.fc40             fedora    1.0 M
 google-noto-fonts-common      noarch  20230801-3.fc40          fedora     17 k
 google-noto-sans-vf-fonts     noarch  20230801-3.fc40          fedora    583 k
 graphite2                     aarch64 1.3.14-12.fc39           fedora     93 k
 groff-base                    aarch64 1.23.0-2.fc39            fedora    1.1 M
 guile22                       aarch64 2.2.7-9.fc39             fedora    6.5 M
 harfbuzz                      aarch64 8.2.1-1.fc40             fedora    934 k
 jbigkit-libs                  aarch64 2.1-26.fc39              fedora     53 k
 jsoncpp                       aarch64 1.9.5-5.fc39             fedora     91 k
 kernel-headers                aarch64 6.6.0-0.rc2.git0.1.fc40  fedora    1.5 M
 lcms2                         aarch64 2.15-2.fc40              copr_base 177 k
 libICE                        aarch64 1.0.10-12.fc40           fedora     69 k
 libICE-devel                  aarch64 1.0.10-12.fc40           fedora     46 k
 libSM                         aarch64 1.2.3-14.fc40            fedora     41 k
 libSM-devel                   aarch64 1.2.3-14.fc40            fedora     12 k
 libX11                        aarch64 1.8.6-3.fc40             fedora    643 k
 libX11-common                 noarch  1.8.6-3.fc40             fedora    175 k
 libX11-devel                  aarch64 1.8.6-3.fc40             fedora    1.0 M
 libX11-xcb                    aarch64 1.8.6-3.fc40             fedora     12 k
 libXau                        aarch64 1.0.11-4.fc40            fedora     32 k
 libXau-devel                  aarch64 1.0.11-4.fc40            fedora     14 k
 libXdmcp                      aarch64 1.1.3-12.fc40            fedora     35 k
 libXext                       aarch64 1.3.5-3.fc39             fedora     39 k
 libXext-devel                 aarch64 1.3.5-3.fc39             fedora     85 k
 libXfixes                     aarch64 6.0.0-7.fc40             fedora     19 k
 libXfixes-devel               aarch64 6.0.0-7.fc40             fedora     12 k
 libXfont2                     aarch64 2.0.3-16.fc40            fedora    142 k
 libXft                        aarch64 2.3.8-4.fc40             fedora     71 k
 libXi                         aarch64 1.8.1-3.fc40             fedora     39 k
 libXmu                        aarch64 1.1.4-4.fc40             fedora     76 k
 libXrender                    aarch64 0.9.11-4.fc40            fedora     27 k
 libXt                         aarch64 1.2.1-6.fc40             fedora    176 k
 libXt-devel                   aarch64 1.2.1-6.fc40             fedora    460 k
 libXxf86vm                    aarch64 1.1.5-4.fc40             fedora     18 k
 libasan                       aarch64 13.2.1-3.fc40            fedora    456 k
 libatomic                     aarch64 13.2.1-3.fc40            fedora     38 k
 libb2                         aarch64 0.98.1-9.fc39            fedora     24 k
 libdrm                        aarch64 2.4.114-3.fc39           fedora    135 k
 libdrm-devel                  aarch64 2.4.114-3.fc39           fedora    185 k
 libfontenc                    aarch64 1.1.6-3.fc40             copr_base  33 k
 libgfortran                   aarch64 13.2.1-3.fc40            fedora    439 k
 libglvnd                      aarch64 1:1.7.0-1.fc40           fedora    126 k
 libglvnd-core-devel           aarch64 1:1.7.0-1.fc40           fedora     17 k
 libglvnd-egl                  aarch64 1:1.7.0-1.fc40           fedora     37 k
 libglvnd-gles                 aarch64 1:1.7.0-1.fc40           fedora     32 k
 libglvnd-glx                  aarch64 1:1.7.0-1.fc40           fedora    138 k
 libglvnd-opengl               aarch64 1:1.7.0-1.fc40           fedora     44 k
 libicu                        aarch64 73.2-2.fc39              fedora     10 M
 libicu-devel                  aarch64 73.2-2.fc39              fedora    925 k
 libimagequant                 aarch64 4.0.1-5.fc39             fedora    291 k
 libjpeg-turbo                 aarch64 2.1.4-3.fc39             fedora    196 k
 liblerc                       aarch64 4.0.0-4.fc39             fedora    179 k
 libmpc                        aarch64 1.3.1-3.fc39             fedora     72 k
 libpng                        aarch64 2:1.6.40-1.fc40          copr_base 116 k
 libqhull_r                    aarch64 1:8.0.2-2.fc40           fedora    193 k
 libraqm                       aarch64 0.8.0-5.fc39             fedora     20 k
 libstdc++-devel               aarch64 13.2.1-3.fc40            fedora    2.6 M
 libtiff                       aarch64 4.4.0-8.fc40             copr_base 196 k
 libtool-ltdl                  aarch64 2.4.7-8.fc40             fedora     36 k
 libubsan                      aarch64 13.2.1-3.fc40            fedora    205 k
 libunwind                     aarch64 1.7.2-1.fc40             fedora     72 k
 libuv                         aarch64 1:1.46.0-2.fc39          fedora    156 k
 libwayland-client             aarch64 1.22.0-2.fc39            fedora     33 k
 libwayland-server             aarch64 1.22.0-2.fc39            fedora     42 k
 libwebp                       aarch64 1.3.2-1.fc40             fedora    243 k
 libxcb                        aarch64 1.13.1-12.fc39           fedora    238 k
 libxcb-devel                  aarch64 1.13.1-12.fc39           fedora    1.4 M
 libxcrypt-devel               aarch64 4.4.36-2.fc39            fedora     30 k
 libxkbfile                    aarch64 1.1.1-4.fc40             fedora     89 k
 libxshmfence                  aarch64 1.3-13.fc39              fedora     12 k
 libxslt                       aarch64 1.1.38-3.fc39            fedora    185 k
 mesa-libEGL                   aarch64 23.2.0~rc3-1.fc40        fedora    133 k
 mesa-libGL                    aarch64 23.2.0~rc3-1.fc40        fedora    186 k
 mesa-libGL-devel              aarch64 23.2.0~rc3-1.fc40        fedora     36 k
 mesa-libGLU                   aarch64 9.0.3-1.fc39             fedora    148 k
 mesa-libGLU-devel             aarch64 9.0.3-1.fc39             fedora     12 k
 mesa-libgbm                   aarch64 23.2.0~rc3-1.fc40        fedora     46 k
 mesa-libglapi                 aarch64 23.2.0~rc3-1.fc40        fedora     67 k
 mpdecimal                     aarch64 2.5.1-7.fc39             fedora     90 k
 ncurses                       aarch64 6.4-7.20230520.fc40      fedora    415 k
 nettle                        aarch64 3.9.1-2.fc39             fedora    434 k
 openblas                      aarch64 0.3.21-6.fc39            fedora     35 k
 openblas-openmp               aarch64 0.3.21-6.fc39            fedora    3.7 M
 openjpeg2                     aarch64 2.5.0-4.fc39             fedora    176 k
 perl-AutoLoader               noarch  5.74-500.fc40            copr_base  22 k
 perl-B                        aarch64 1.88-500.fc40            copr_base 178 k
 perl-Carp                     noarch  1.54-500.fc39            fedora     29 k
 perl-Class-Struct             noarch  0.68-500.fc40            copr_base  23 k
 perl-Data-Dumper              aarch64 2.188-501.fc39           fedora     55 k
 perl-Digest                   noarch  1.20-500.fc39            fedora     25 k
 perl-Digest-MD5               aarch64 2.58-500.fc39            fedora     36 k
 perl-DynaLoader               aarch64 1.54-500.fc40            copr_base  27 k
 perl-Encode                   aarch64 4:3.19-500.fc39          fedora    1.7 M
 perl-Errno                    aarch64 1.37-500.fc40            copr_base  15 k
 perl-Exporter                 noarch  5.77-500.fc39            fedora     31 k
 perl-Fcntl                    aarch64 1.15-500.fc40            copr_base  21 k
 perl-File-Basename            noarch  2.86-500.fc40            copr_base  18 k
 perl-File-Path                noarch  2.18-500.fc39            fedora     35 k
 perl-File-Temp                noarch  1:0.231.100-500.fc39     fedora     58 k
 perl-File-stat                noarch  1.13-500.fc40            copr_base  18 k
 perl-FileHandle               noarch  2.05-500.fc40            copr_base  16 k
 perl-Getopt-Long              noarch  1:2.54-500.fc39          fedora     60 k
 perl-Getopt-Std               noarch  1.13-500.fc40            copr_base  16 k
 perl-HTTP-Tiny                noarch  0.088-3.fc39             fedora     56 k
 perl-IO                       aarch64 1.52-500.fc40            copr_base  78 k
 perl-IO-Socket-IP             noarch  0.42-1.fc39              fedora     42 k
 perl-IO-Socket-SSL            noarch  2.083-3.fc39             fedora    225 k
 perl-IPC-Open3                noarch  1.22-500.fc40            copr_base  22 k
 perl-MIME-Base64              aarch64 3.16-500.fc39            fedora     30 k
 perl-Mozilla-CA               noarch  20230821-1.fc40          fedora     13 k
 perl-Net-SSLeay               aarch64 1.92-10.fc39             fedora    356 k
 perl-POSIX                    aarch64 2.13-500.fc40            copr_base  98 k
 perl-PathTools                aarch64 3.89-500.fc39            fedora     88 k
 perl-Pod-Escapes              noarch  1:1.07-501.fc40          fedora     19 k
 perl-Pod-Perldoc              noarch  3.28.01-501.fc39         fedora     86 k
 perl-Pod-Simple               noarch  1:3.45-4.fc39            fedora    218 k
 perl-Pod-Usage                noarch  4:2.03-500.fc39          fedora     39 k
 perl-Scalar-List-Utils        aarch64 5:1.63-500.fc39          fedora     71 k
 perl-SelectSaver              noarch  1.02-500.fc40            copr_base  12 k
 perl-Socket                   aarch64 4:2.037-3.fc39           fedora     56 k
 perl-Storable                 aarch64 1:3.32-500.fc39          fedora     97 k
 perl-Symbol                   noarch  1.09-500.fc40            copr_base  15 k
 perl-Term-ANSIColor           noarch  5.01-501.fc39            fedora     47 k
 perl-Term-Cap                 noarch  1.18-500.fc39            fedora     22 k
 perl-Text-ParseWords          noarch  3.31-500.fc39            fedora     16 k
 perl-Text-Tabs+Wrap           noarch  2023.0511-3.fc39         fedora     22 k
 perl-Time-Local               noarch  2:1.350-3.fc39           fedora     34 k
 perl-URI                      noarch  5.21-1.fc40              fedora    125 k
 perl-base                     noarch  2.27-500.fc40            copr_base  17 k
 perl-constant                 noarch  1.33-501.fc39            fedora     22 k
 perl-if                       noarch  0.61.000-500.fc40        copr_base  15 k
 perl-interpreter              aarch64 4:5.38.0-500.fc40        copr_base  72 k
 perl-libnet                   noarch  3.15-501.fc39            fedora    129 k
 perl-libs                     aarch64 4:5.38.0-500.fc40        copr_base 2.2 M
 perl-locale                   noarch  1.10-500.fc40            copr_base  14 k
 perl-mro                      aarch64 1.28-500.fc40            copr_base  29 k
 perl-overload                 noarch  1.37-500.fc40            copr_base  46 k
 perl-overloading              noarch  0.02-500.fc40            copr_base  13 k
 perl-parent                   noarch  1:0.241-500.fc39         fedora     14 k
 perl-podlators                noarch  1:5.01-500.fc39          fedora    125 k
 perl-vars                     noarch  1.05-500.fc40            copr_base  14 k
 pixman                        aarch64 0.42.2-2.fc39            fedora    216 k
 pyproject-rpm-macros          noarch  1.9.0-2.fc39             fedora     41 k
 python-pip-wheel              noarch  23.2.1-1.fc39            fedora    1.5 M
 python-rpm-macros             noarch  3.12-4.fc40              fedora     19 k
 python3                       aarch64 3.12.0~rc3-1.fc40        fedora     26 k
 python3-appdirs               noarch  1.4.4-11.fc39            fedora     23 k
 python3-brotli                aarch64 1.1.0-1.fc40             fedora    346 k
 python3-cairo                 aarch64 1.24.0-2.fc39            fedora    127 k
 python3-charset-normalizer    noarch  3.2.0-2.fc39             fedora    105 k
 python3-contourpy             aarch64 1.1.0-2.fc39             fedora    221 k
 python3-cycler                noarch  0.11.0-9.fc39            fedora     21 k
 python3-dateutil              noarch  1:2.8.2-10.fc39          fedora    355 k
 python3-fonttools             aarch64 4.42.1-1.fc40            fedora    2.8 M
 python3-fs                    noarch  2.4.16-5.fc39            fedora    302 k
 python3-idna                  noarch  3.4-5.fc40               fedora    109 k
 python3-kiwisolver            aarch64 1.4.5-1.fc40             fedora     65 k
 python3-libs                  aarch64 3.12.0~rc3-1.fc40        fedora    9.1 M
 python3-lxml                  aarch64 4.9.3-2.fc39             fedora    1.4 M
 python3-matplotlib-data       noarch  3.8.0-1.fc40             fedora    524 k
 python3-matplotlib-data-fonts noarch  3.8.0-1.fc40             fedora    2.3 M
 python3-matplotlib-tk         aarch64 3.8.0-1.fc40             fedora     48 k
 python3-numpy                 aarch64 1:1.24.4-2.fc39          fedora    7.2 M
 python3-numpy-f2py            aarch64 1:1.24.4-2.fc39          fedora    478 k
 python3-olefile               noarch  0.46-21.fc39             fedora     66 k
 python3-packaging             noarch  23.1-5.fc40              fedora    115 k
 python3-pillow                aarch64 10.0.1-1.fc40            fedora    908 k
 python3-pillow-tk             aarch64 10.0.1-1.fc40            fedora     30 k
 python3-pooch                 noarch  1.5.2-12.fc39            fedora    126 k
 python3-pyparsing             noarch  3.0.9-11.fc39            fedora    254 k
 python3-pysocks               noarch  1.7.1-20.fc39            fedora     39 k
 python3-requests              noarch  2.28.2-6.fc40            fedora    151 k
 python3-rpm-generators        noarch  14-7.fc39                fedora     30 k
 python3-rpm-macros            noarch  3.12-4.fc40              fedora     14 k
 python3-scipy                 aarch64 1.11.1-1.fc39            fedora     15 M
 python3-six                   noarch  1.16.0-12.fc39           fedora     41 k
 python3-tkinter               aarch64 3.12.0~rc3-1.fc40        fedora    407 k
 python3-urllib3               noarch  1.26.16-3.fc40           fedora    273 k
 python3-urllib3+socks         noarch  1.26.16-3.fc40           fedora    9.9 k
 rhash                         aarch64 1.4.3-3.fc39             fedora    192 k
 tcl                           aarch64 1:8.6.13-1.fc40          copr_base 1.1 M
 tk                            aarch64 1:8.6.13-1.fc40          fedora    1.6 M
 tzdata                        noarch  2023c-3.fc40             fedora    718 k
 vim-filesystem                noarch  2:9.0.1882-1.fc40        fedora     18 k
 xkbcomp                       aarch64 1.4.6-6.fc39             fedora     97 k
 xkeyboard-config              noarch  2.39-2.fc39              fedora    962 k
 xml-common                    noarch  0.6.3-61.fc39            fedora     31 k
 xorg-x11-proto-devel          noarch  2023.2-3.fc40            fedora    298 k
 xorg-x11-server-common        aarch64 1.20.14-24.fc39          fedora     35 k
 xorg-x11-xauth                aarch64 1:1.1.2-4.fc39           fedora     35 k

Transaction Summary
================================================================================
Install  264 Packages

Total size: 195 M
Total download size: 107 M
Installed size: 867 M
Downloading Packages:
[SKIPPED] emacs-filesystem-29.1-1.fc40.noarch.rpm: Already downloaded          
[SKIPPED] zlib-ng-compat-devel-2.1.3-5.fc40.aarch64.rpm: Already downloaded    
[SKIPPED] annobin-docs-12.26-1.fc40.noarch.rpm: Already downloaded             
[SKIPPED] annobin-plugin-gcc-12.26-1.fc40.aarch64.rpm: Already downloaded      
[SKIPPED] cmake-3.27.4-8.fc40.aarch64.rpm: Already downloaded                  
[SKIPPED] cmake-data-3.27.4-8.fc40.noarch.rpm: Already downloaded              
[SKIPPED] cmake-filesystem-3.27.4-8.fc40.aarch64.rpm: Already downloaded       
[SKIPPED] cmake-rpm-macros-3.27.4-8.fc40.noarch.rpm: Already downloaded        
[SKIPPED] cpp-13.2.1-3.fc40.aarch64.rpm: Already downloaded                    
[SKIPPED] expat-2.5.0-3.fc39.aarch64.rpm: Already downloaded                   
[SKIPPED] gc-8.2.2-4.fc39.aarch64.rpm: Already downloaded                      
[SKIPPED] gcc-13.2.1-3.fc40.aarch64.rpm: Already downloaded                    
[SKIPPED] gcc-c++-13.2.1-3.fc40.aarch64.rpm: Already downloaded                
[SKIPPED] gcc-plugin-annobin-13.2.1-3.fc40.aarch64.rpm: Already downloaded     
[SKIPPED] glibc-devel-2.38.9000-9.fc40.aarch64.rpm: Already downloaded         
[SKIPPED] guile22-2.2.7-9.fc39.aarch64.rpm: Already downloaded                 
[SKIPPED] jsoncpp-1.9.5-5.fc39.aarch64.rpm: Already downloaded                 
[SKIPPED] kernel-headers-6.6.0-0.rc2.git0.1.fc40.aarch64.rpm: Already downloaded
[SKIPPED] libasan-13.2.1-3.fc40.aarch64.rpm: Already downloaded                
[SKIPPED] libatomic-13.2.1-3.fc40.aarch64.rpm: Already downloaded              
[SKIPPED] libb2-0.98.1-9.fc39.aarch64.rpm: Already downloaded                  
[SKIPPED] libmpc-1.3.1-3.fc39.aarch64.rpm: Already downloaded                  
[SKIPPED] libstdc++-devel-13.2.1-3.fc40.aarch64.rpm: Already downloaded        
[SKIPPED] libtool-ltdl-2.4.7-8.fc40.aarch64.rpm: Already downloaded            
[SKIPPED] libubsan-13.2.1-3.fc40.aarch64.rpm: Already downloaded               
[SKIPPED] libuv-1.46.0-2.fc39.aarch64.rpm: Already downloaded                  
[SKIPPED] libxcrypt-devel-4.4.36-2.fc39.aarch64.rpm: Already downloaded        
[SKIPPED] make-4.4.1-2.fc39.aarch64.rpm: Already downloaded                    
[SKIPPED] mpdecimal-2.5.1-7.fc39.aarch64.rpm: Already downloaded               
[SKIPPED] python-pip-wheel-23.2.1-1.fc39.noarch.rpm: Already downloaded        
[SKIPPED] python3-3.12.0~rc3-1.fc40.aarch64.rpm: Already downloaded            
[SKIPPED] python3-libs-3.12.0~rc3-1.fc40.aarch64.rpm: Already downloaded       
[SKIPPED] rhash-1.4.3-3.fc39.aarch64.rpm: Already downloaded                   
[SKIPPED] tzdata-2023c-3.fc40.noarch.rpm: Already downloaded                   
[SKIPPED] vim-filesystem-9.0.1882-1.fc40.noarch.rpm: Already downloaded        
(36/264): boost-1.81.0-6.fc40.aarch64.rpm       873 kB/s |  15 kB     00:00    
(37/264): boost-atomic-1.81.0-6.fc40.aarch64.rp 1.1 MB/s |  20 kB     00:00    
(38/264): boost-chrono-1.81.0-6.fc40.aarch64.rp 1.4 MB/s |  26 kB     00:00    
(39/264): boost-container-1.81.0-6.fc40.aarch64  26 MB/s |  40 kB     00:00    
(40/264): boost-context-1.81.0-6.fc40.aarch64.r  11 MB/s |  18 kB     00:00    
(41/264): boost-contract-1.81.0-6.fc40.aarch64.  25 MB/s |  44 kB     00:00    
(42/264): boost-coroutine-1.81.0-6.fc40.aarch64  12 MB/s |  21 kB     00:00    
(43/264): boost-date-time-1.81.0-6.fc40.aarch64  11 MB/s |  17 kB     00:00    
(44/264): boost-fiber-1.81.0-6.fc40.aarch64.rpm 7.5 MB/s |  43 kB     00:00    
(45/264): boost-filesystem-1.81.0-6.fc40.aarch6  12 MB/s |  64 kB     00:00    
(46/264): boost-graph-1.81.0-6.fc40.aarch64.rpm  30 MB/s | 144 kB     00:00    
(47/264): boost-iostreams-1.81.0-6.fc40.aarch64 7.0 MB/s |  41 kB     00:00    
(48/264): boost-json-1.81.0-6.fc40.aarch64.rpm   30 MB/s | 108 kB     00:00    
(49/264): boost-locale-1.81.0-6.fc40.aarch64.rp  57 MB/s | 207 kB     00:00    
(50/264): boost-log-1.81.0-6.fc40.aarch64.rpm    67 MB/s | 460 kB     00:00    
(51/264): boost-math-1.81.0-6.fc40.aarch64.rpm   43 MB/s | 260 kB     00:00    
(52/264): boost-devel-1.81.0-6.fc40.aarch64.rpm 269 MB/s |  12 MB     00:00    
(53/264): boost-nowide-1.81.0-6.fc40.aarch64.rp 1.4 MB/s |  22 kB     00:00    
(54/264): boost-numpy3-1.81.0-6.fc40.aarch64.rp 2.2 MB/s |  30 kB     00:00    
(55/264): boost-program-options-1.81.0-6.fc40.a  49 MB/s | 106 kB     00:00    
(56/264): boost-python3-1.81.0-6.fc40.aarch64.r  39 MB/s |  90 kB     00:00    
(57/264): boost-random-1.81.0-6.fc40.aarch64.rp 9.3 MB/s |  25 kB     00:00    
(58/264): boost-regex-1.81.0-6.fc40.aarch64.rpm  64 MB/s | 109 kB     00:00    
(59/264): boost-serialization-1.81.0-6.fc40.aar  80 MB/s | 129 kB     00:00    
(60/264): boost-stacktrace-1.81.0-6.fc40.aarch6  19 MB/s |  31 kB     00:00    
(61/264): boost-system-1.81.0-6.fc40.aarch64.rp 9.4 MB/s |  17 kB     00:00    
(62/264): boost-test-1.81.0-6.fc40.aarch64.rpm  108 MB/s | 228 kB     00:00    
(63/264): boost-thread-1.81.0-6.fc40.aarch64.rp  28 MB/s |  57 kB     00:00    
(64/264): boost-timer-1.81.0-6.fc40.aarch64.rpm  12 MB/s |  25 kB     00:00    
(65/264): boost-type_erasure-1.81.0-6.fc40.aarc  19 MB/s |  33 kB     00:00    
(66/264): boost-wave-1.81.0-6.fc40.aarch64.rpm  105 MB/s | 222 kB     00:00    
(67/264): cairo-1.17.8-5.fc40.aarch64.rpm       181 MB/s | 689 kB     00:00    
(68/264): freetype-2.13.1-2.fc40.aarch64.rpm    103 MB/s | 406 kB     00:00    
(69/264): lcms2-2.15-2.fc40.aarch64.rpm          42 MB/s | 177 kB     00:00    
(70/264): libfontenc-1.1.6-3.fc40.aarch64.rpm    15 MB/s |  33 kB     00:00    
(71/264): libpng-1.6.40-1.fc40.aarch64.rpm       62 MB/s | 116 kB     00:00    
(72/264): libtiff-4.4.0-8.fc40.aarch64.rpm       89 MB/s | 196 kB     00:00    
(73/264): libtiff-devel-4.4.0-8.fc40.aarch64.rp 179 MB/s | 513 kB     00:00    
(74/264): perl-AutoLoader-5.74-500.fc40.noarch. 9.4 MB/s |  22 kB     00:00    
(75/264): perl-B-1.88-500.fc40.aarch64.rpm       95 MB/s | 178 kB     00:00    
(76/264): perl-Class-Struct-0.68-500.fc40.noarc  15 MB/s |  23 kB     00:00    
(77/264): perl-DynaLoader-1.54-500.fc40.aarch64  17 MB/s |  27 kB     00:00    
(78/264): perl-Errno-1.37-500.fc40.aarch64.rpm   10 MB/s |  15 kB     00:00    
(79/264): perl-Fcntl-1.15-500.fc40.aarch64.rpm   14 MB/s |  21 kB     00:00    
(80/264): perl-File-Basename-2.86-500.fc40.noar  12 MB/s |  18 kB     00:00    
(81/264): perl-File-stat-1.13-500.fc40.noarch.r  12 MB/s |  18 kB     00:00    
(82/264): perl-FileHandle-2.05-500.fc40.noarch. 7.9 MB/s |  16 kB     00:00    
(83/264): perl-IO-1.52-500.fc40.aarch64.rpm      45 MB/s |  78 kB     00:00    
(84/264): perl-IPC-Open3-1.22-500.fc40.noarch.r  14 MB/s |  22 kB     00:00    
(85/264): perl-Getopt-Std-1.13-500.fc40.noarch. 4.8 MB/s |  16 kB     00:00    
(86/264): perl-POSIX-2.13-500.fc40.aarch64.rpm   57 MB/s |  98 kB     00:00    
(87/264): perl-SelectSaver-1.02-500.fc40.noarch 8.3 MB/s |  12 kB     00:00    
(88/264): perl-Symbol-1.09-500.fc40.noarch.rpm  9.5 MB/s |  15 kB     00:00    
(89/264): perl-base-2.27-500.fc40.noarch.rpm    8.0 MB/s |  17 kB     00:00    
(90/264): perl-if-0.61.000-500.fc40.noarch.rpm  7.3 MB/s |  15 kB     00:00    
(91/264): perl-interpreter-5.38.0-500.fc40.aarc  34 MB/s |  72 kB     00:00    
(92/264): perl-locale-1.10-500.fc40.noarch.rpm  9.0 MB/s |  14 kB     00:00    
(93/264): perl-mro-1.28-500.fc40.aarch64.rpm    9.1 MB/s |  29 kB     00:00    
(94/264): perl-libs-5.38.0-500.fc40.aarch64.rpm 240 MB/s | 2.2 MB     00:00    
(95/264): perl-overload-1.37-500.fc40.noarch.rp  16 MB/s |  46 kB     00:00    
(96/264): perl-overloading-0.02-500.fc40.noarch 7.7 MB/s |  13 kB     00:00    
(97/264): perl-macros-5.38.0-500.fc40.noarch.rp 1.1 MB/s |  13 kB     00:00    
(98/264): perl-vars-1.05-500.fc40.noarch.rpm    7.0 MB/s |  14 kB     00:00    
(99/264): tcl-8.6.13-1.fc40.aarch64.rpm         242 MB/s | 1.1 MB     00:00    
(100/264): dejavu-sans-fonts-2.37-20.fc38.noarc  76 MB/s | 1.3 MB     00:00    
(101/264): default-fonts-core-sans-4.0-9.fc40.n 1.4 MB/s |  32 kB     00:00    
(102/264): flexiblas-3.3.1-5.fc39.aarch64.rpm   7.2 MB/s |  33 kB     00:00    
(103/264): abattis-cantarell-vf-fonts-0.301-10. 3.8 MB/s | 121 kB     00:00    
(104/264): flexiblas-openblas-openmp-3.3.1-5.fc 1.9 MB/s |  16 kB     00:00    
(105/264): flexiblas-netlib-3.3.1-5.fc39.aarch6 142 MB/s | 2.6 MB     00:00    
(106/264): fontconfig-2.14.2-5.fc40.aarch64.rpm  37 MB/s | 301 kB     00:00    
(107/264): fonts-filesystem-2.0.5-12.fc39.noarc 836 kB/s | 8.2 kB     00:00    
(108/264): freeglut-3.4.0-4.fc39.aarch64.rpm     26 MB/s | 152 kB     00:00    
(109/264): freeglut-devel-3.4.0-4.fc39.aarch64.  64 MB/s | 945 kB     00:00    
(110/264): fribidi-1.0.13-2.fc39.aarch64.rpm    6.7 MB/s |  91 kB     00:00    
(111/264): gnutls-3.8.1-1.fc40.aarch64.rpm       70 MB/s | 1.0 MB     00:00    
(112/264): gl-manpages-1.1-29.20190306.fc40.noa  41 MB/s | 1.2 MB     00:00    
(113/264): glib2-2.78.0-2.fc40.aarch64.rpm      124 MB/s | 2.8 MB     00:00    
(114/264): google-noto-fonts-common-20230801-3. 1.7 MB/s |  17 kB     00:00    
(115/264): graphite2-1.3.14-12.fc39.aarch64.rpm  17 MB/s |  93 kB     00:00    
(116/264): google-noto-sans-vf-fonts-20230801-3  51 MB/s | 583 kB     00:00    
(117/264): groff-base-1.23.0-2.fc39.aarch64.rpm 136 MB/s | 1.1 MB     00:00    
(118/264): harfbuzz-8.2.1-1.fc40.aarch64.rpm     85 MB/s | 934 kB     00:00    
(119/264): libICE-1.0.10-12.fc40.aarch64.rpm     13 MB/s |  69 kB     00:00    
(120/264): libSM-1.2.3-14.fc40.aarch64.rpm      8.1 MB/s |  41 kB     00:00    
(121/264): jbigkit-libs-2.1-26.fc39.aarch64.rpm 3.1 MB/s |  53 kB     00:00    
(122/264): libSM-devel-1.2.3-14.fc40.aarch64.rp 2.7 MB/s |  12 kB     00:00    
(123/264): libICE-devel-1.0.10-12.fc40.aarch64. 3.0 MB/s |  46 kB     00:00    
(124/264): libX11-common-1.8.6-3.fc40.noarch.rp  26 MB/s | 175 kB     00:00    
(125/264): libX11-1.8.6-3.fc40.aarch64.rpm       62 MB/s | 643 kB     00:00    
(126/264): libX11-xcb-1.8.6-3.fc40.aarch64.rpm  2.8 MB/s |  12 kB     00:00    
(127/264): libXau-devel-1.0.11-4.fc40.aarch64.r 2.7 MB/s |  14 kB     00:00    
(128/264): libX11-devel-1.8.6-3.fc40.aarch64.rp  59 MB/s | 1.0 MB     00:00    
(129/264): libXau-1.0.11-4.fc40.aarch64.rpm     2.9 MB/s |  32 kB     00:00    
(130/264): libXdmcp-1.1.3-12.fc40.aarch64.rpm   7.3 MB/s |  35 kB     00:00    
(131/264): libXext-devel-1.3.5-3.fc39.aarch64.r  16 MB/s |  85 kB     00:00    
(132/264): libXfixes-devel-6.0.0-7.fc40.aarch64 3.5 MB/s |  12 kB     00:00    
(133/264): libXext-1.3.5-3.fc39.aarch64.rpm     2.7 MB/s |  39 kB     00:00    
(134/264): libXfixes-6.0.0-7.fc40.aarch64.rpm   1.6 MB/s |  19 kB     00:00    
(135/264): libXi-1.8.1-3.fc40.aarch64.rpm        19 MB/s |  39 kB     00:00    
(136/264): libXft-2.3.8-4.fc40.aarch64.rpm      5.7 MB/s |  71 kB     00:00    
(137/264): libXi-devel-1.8.1-3.fc40.aarch64.rpm  13 MB/s | 116 kB     00:00    
(138/264): libXfont2-2.0.3-16.fc40.aarch64.rpm  6.6 MB/s | 142 kB     00:00    
(139/264): libXmu-devel-1.1.4-4.fc40.aarch64.rp 6.2 MB/s |  27 kB     00:00    
(140/264): libXmu-1.1.4-4.fc40.aarch64.rpm       15 MB/s |  76 kB     00:00    
(141/264): libXrender-0.9.11-4.fc40.aarch64.rpm 6.6 MB/s |  27 kB     00:00    
(142/264): libXt-1.2.1-6.fc40.aarch64.rpm        32 MB/s | 176 kB     00:00    
(143/264): libXxf86vm-1.1.5-4.fc40.aarch64.rpm  3.9 MB/s |  18 kB     00:00    
(144/264): libdrm-2.4.114-3.fc39.aarch64.rpm     25 MB/s | 135 kB     00:00    
(145/264): libXt-devel-1.2.1-6.fc40.aarch64.rpm  36 MB/s | 460 kB     00:00    
(146/264): libdrm-devel-2.4.114-3.fc39.aarch64.  23 MB/s | 185 kB     00:00    
(147/264): libgfortran-13.2.1-3.fc40.aarch64.rp  63 MB/s | 439 kB     00:00    
(148/264): libglvnd-1.7.0-1.fc40.aarch64.rpm     19 MB/s | 126 kB     00:00    
(149/264): libglvnd-core-devel-1.7.0-1.fc40.aar 3.8 MB/s |  17 kB     00:00    
(150/264): libglvnd-devel-1.7.0-1.fc40.aarch64.  34 MB/s | 162 kB     00:00    
(151/264): libglvnd-gles-1.7.0-1.fc40.aarch64.r 7.7 MB/s |  32 kB     00:00    
(152/264): libglvnd-egl-1.7.0-1.fc40.aarch64.rp 6.3 MB/s |  37 kB     00:00    
(153/264): libglvnd-glx-1.7.0-1.fc40.aarch64.rp  18 MB/s | 138 kB     00:00    
(154/264): libglvnd-opengl-1.7.0-1.fc40.aarch64 4.2 MB/s |  44 kB     00:00    
(155/264): libimagequant-4.0.1-5.fc39.aarch64.r  41 MB/s | 291 kB     00:00    
(156/264): libjpeg-turbo-2.1.4-3.fc39.aarch64.r  19 MB/s | 196 kB     00:00    
(157/264): liblerc-4.0.0-4.fc39.aarch64.rpm      29 MB/s | 179 kB     00:00    
(158/264): libqhull_r-8.0.2-2.fc40.aarch64.rpm   11 MB/s | 193 kB     00:00    
(159/264): libraqm-0.8.0-5.fc39.aarch64.rpm     3.3 MB/s |  20 kB     00:00    
(160/264): libicu-devel-73.2-2.fc39.aarch64.rpm  15 MB/s | 925 kB     00:00    
(161/264): libicu-73.2-2.fc39.aarch64.rpm       128 MB/s |  10 MB     00:00    
(162/264): libunwind-1.7.2-1.fc40.aarch64.rpm   4.3 MB/s |  72 kB     00:00    
(163/264): libwayland-client-1.22.0-2.fc39.aarc 2.3 MB/s |  33 kB     00:00    
(164/264): libwayland-server-1.22.0-2.fc39.aarc 8.4 MB/s |  42 kB     00:00    
(165/264): libwebp-1.3.2-1.fc40.aarch64.rpm      22 MB/s | 243 kB     00:00    
(166/264): libxkbfile-1.1.1-4.fc40.aarch64.rpm   19 MB/s |  89 kB     00:00    
(167/264): libxcb-devel-1.13.1-12.fc39.aarch64.  99 MB/s | 1.4 MB     00:00    
(168/264): libxshmfence-1.3-13.fc39.aarch64.rpm 2.6 MB/s |  12 kB     00:00    
(169/264): libxcb-1.13.1-12.fc39.aarch64.rpm    9.4 MB/s | 238 kB     00:00    
(170/264): libxslt-1.1.38-3.fc39.aarch64.rpm     23 MB/s | 185 kB     00:00    
(171/264): mesa-libGL-devel-23.2.0~rc3-1.fc40.a 8.9 MB/s |  36 kB     00:00    
(172/264): mesa-libGL-23.2.0~rc3-1.fc40.aarch64  33 MB/s | 186 kB     00:00    
(173/264): mesa-libGLU-devel-9.0.3-1.fc39.aarch 3.0 MB/s |  12 kB     00:00    
(174/264): mesa-libGLU-9.0.3-1.fc39.aarch64.rpm  25 MB/s | 148 kB     00:00    
(175/264): mesa-libEGL-23.2.0~rc3-1.fc40.aarch6 6.5 MB/s | 133 kB     00:00    
(176/264): mesa-libgbm-23.2.0~rc3-1.fc40.aarch6 7.8 MB/s |  46 kB     00:00    
(177/264): mesa-libglapi-23.2.0~rc3-1.fc40.aarc  11 MB/s |  67 kB     00:00    
(178/264): nettle-3.9.1-2.fc39.aarch64.rpm       50 MB/s | 434 kB     00:00    
(179/264): openblas-0.3.21-6.fc39.aarch64.rpm   3.7 MB/s |  35 kB     00:00    
(180/264): ncurses-6.4-7.20230520.fc40.aarch64.  33 MB/s | 415 kB     00:00    
(181/264): perl-Carp-1.54-500.fc39.noarch.rpm    16 MB/s |  29 kB     00:00    
(182/264): perl-Data-Dumper-2.188-501.fc39.aarc  24 MB/s |  55 kB     00:00    
(183/264): openjpeg2-2.5.0-4.fc39.aarch64.rpm    21 MB/s | 176 kB     00:00    
(184/264): perl-Digest-1.20-500.fc39.noarch.rpm 9.2 MB/s |  25 kB     00:00    
(185/264): perl-Digest-MD5-2.58-500.fc39.aarch6  14 MB/s |  36 kB     00:00    
(186/264): perl-Exporter-5.77-500.fc39.noarch.r  10 MB/s |  31 kB     00:00    
(187/264): openblas-openmp-0.3.21-6.fc39.aarch6 158 MB/s | 3.7 MB     00:00    
(188/264): perl-Encode-3.19-500.fc39.aarch64.rp 107 MB/s | 1.7 MB     00:00    
(189/264): perl-File-Path-2.18-500.fc39.noarch. 3.8 MB/s |  35 kB     00:00    
(190/264): perl-File-Temp-0.231.100-500.fc39.no  21 MB/s |  58 kB     00:00    
(191/264): perl-HTTP-Tiny-0.088-3.fc39.noarch.r  26 MB/s |  56 kB     00:00    
(192/264): perl-Getopt-Long-2.54-500.fc39.noarc  14 MB/s |  60 kB     00:00    
(193/264): perl-IO-Socket-SSL-2.083-3.fc39.noar  78 MB/s | 225 kB     00:00    
(194/264): perl-IO-Socket-IP-0.42-1.fc39.noarch 8.0 MB/s |  42 kB     00:00    
(195/264): perl-Mozilla-CA-20230821-1.fc40.noar 7.1 MB/s |  13 kB     00:00    
(196/264): perl-MIME-Base64-3.16-500.fc39.aarch 7.3 MB/s |  30 kB     00:00    
(197/264): perl-Net-SSLeay-1.92-10.fc39.aarch64 107 MB/s | 356 kB     00:00    
(198/264): perl-Pod-Perldoc-3.28.01-501.fc39.no  34 MB/s |  86 kB     00:00    
(199/264): perl-PathTools-3.89-500.fc39.aarch64  20 MB/s |  88 kB     00:00    
(200/264): perl-Pod-Escapes-1.07-501.fc40.noarc 4.8 MB/s |  19 kB     00:00    
(201/264): perl-Pod-Usage-2.03-500.fc39.noarch.  21 MB/s |  39 kB     00:00    
(202/264): perl-Pod-Simple-3.45-4.fc39.noarch.r  67 MB/s | 218 kB     00:00    
(203/264): perl-Scalar-List-Utils-1.63-500.fc39  26 MB/s |  71 kB     00:00    
(204/264): perl-Socket-2.037-3.fc39.aarch64.rpm  29 MB/s |  56 kB     00:00    
(205/264): perl-Term-ANSIColor-5.01-501.fc39.no  27 MB/s |  47 kB     00:00    
(206/264): perl-Text-ParseWords-3.31-500.fc39.n 9.7 MB/s |  16 kB     00:00    
(207/264): perl-Term-Cap-1.18-500.fc39.noarch.r 5.1 MB/s |  22 kB     00:00    
(208/264): perl-Storable-3.32-500.fc39.aarch64.  16 MB/s |  97 kB     00:00    
(209/264): perl-Time-Local-1.350-3.fc39.noarch.  19 MB/s |  34 kB     00:00    
(210/264): perl-Text-Tabs+Wrap-2023.0511-3.fc39 5.1 MB/s |  22 kB     00:00    
(211/264): perl-URI-5.21-1.fc40.noarch.rpm       44 MB/s | 125 kB     00:00    
(212/264): perl-constant-1.33-501.fc39.noarch.r  13 MB/s |  22 kB     00:00    
(213/264): perl-libnet-3.15-501.fc39.noarch.rpm  59 MB/s | 129 kB     00:00    
(214/264): perl-parent-0.241-500.fc39.noarch.rp 6.4 MB/s |  14 kB     00:00    
(215/264): perl-podlators-5.01-500.fc39.noarch.  54 MB/s | 125 kB     00:00    
(216/264): pybind11-devel-2.11.1-1.fc39.aarch64  18 MB/s | 176 kB     00:00    
(217/264): pyproject-rpm-macros-1.9.0-2.fc39.no 4.0 MB/s |  41 kB     00:00    
(218/264): python-rpm-macros-3.12-4.fc40.noarch 4.1 MB/s |  19 kB     00:00    
(219/264): python3-appdirs-1.4.4-11.fc39.noarch 4.0 MB/s |  23 kB     00:00    
(220/264): pixman-0.42.2-2.fc39.aarch64.rpm      12 MB/s | 216 kB     00:00    
(221/264): python3-brotli-1.1.0-1.fc40.aarch64.  51 MB/s | 346 kB     00:00    
(222/264): python3-charset-normalizer-3.2.0-2.f  20 MB/s | 105 kB     00:00    
(223/264): python3-cairo-1.24.0-2.fc39.aarch64.  20 MB/s | 127 kB     00:00    
(224/264): python3-dateutil-2.8.2-10.fc39.noarc 115 MB/s | 355 kB     00:00    
(225/264): python3-cycler-0.11.0-9.fc39.noarch. 4.1 MB/s |  21 kB     00:00    
(226/264): python3-contourpy-1.1.0-2.fc39.aarch  26 MB/s | 221 kB     00:00    
(227/264): python3-flaky-3.7.0-12.fc39.noarch.r 3.7 MB/s |  45 kB     00:00    
(228/264): python3-devel-3.12.0~rc3-1.fc40.aarc  20 MB/s | 311 kB     00:00    
(229/264): python3-fonttools-4.42.1-1.fc40.aarc 136 MB/s | 2.8 MB     00:00    
(230/264): python3-fs-2.4.16-5.fc39.noarch.rpm   27 MB/s | 302 kB     00:00    
(231/264): python3-idna-3.4-5.fc40.noarch.rpm    12 MB/s | 109 kB     00:00    
(232/264): python3-kiwisolver-1.4.5-1.fc40.aarc 6.1 MB/s |  65 kB     00:00    
(233/264): python3-matplotlib-data-3.8.0-1.fc40  58 MB/s | 524 kB     00:00    
(234/264): python3-matplotlib-3.8.0-1.fc40.aarc 157 MB/s | 4.4 MB     00:00    
(235/264): python3-matplotlib-tk-3.8.0-1.fc40.a 6.7 MB/s |  48 kB     00:00    
(236/264): python3-matplotlib-data-fonts-3.8.0- 132 MB/s | 2.3 MB     00:00    
(237/264): python3-lxml-4.9.3-2.fc39.aarch64.rp  32 MB/s | 1.4 MB     00:00    
(238/264): python3-olefile-0.46-21.fc39.noarch.  12 MB/s |  66 kB     00:00    
(239/264): python3-packaging-23.1-5.fc40.noarch  21 MB/s | 115 kB     00:00    
(240/264): python3-numpy-f2py-1.24.4-2.fc39.aar  22 MB/s | 478 kB     00:00    
(241/264): python3-numpy-1.24.4-2.fc39.aarch64. 194 MB/s | 7.2 MB     00:00    
(242/264): python3-pillow-tk-10.0.1-1.fc40.aarc 2.7 MB/s |  30 kB     00:00    
(243/264): python3-pillow-10.0.1-1.fc40.aarch64  41 MB/s | 908 kB     00:00    
(244/264): python3-pyparsing-3.0.9-11.fc39.noar  36 MB/s | 254 kB     00:00    
(245/264): python3-pysocks-1.7.1-20.fc39.noarch 9.0 MB/s |  39 kB     00:00    
(246/264): python3-rpm-generators-14-7.fc39.noa 6.7 MB/s |  30 kB     00:00    
(247/264): python3-pooch-1.5.2-12.fc39.noarch.r 9.0 MB/s | 126 kB     00:00    
(248/264): python3-requests-2.28.2-6.fc40.noarc  22 MB/s | 151 kB     00:00    
(249/264): python3-rpm-macros-3.12-4.fc40.noarc 3.2 MB/s |  14 kB     00:00    
(250/264): python3-six-1.16.0-12.fc39.noarch.rp  19 MB/s |  41 kB     00:00    
(251/264): python3-setuptools-67.7.2-7.fc40.noa  85 MB/s | 1.5 MB     00:00    
(252/264): python3-tkinter-3.12.0~rc3-1.fc40.aa  25 MB/s | 407 kB     00:00    
(253/264): python3-urllib3+socks-1.26.16-3.fc40 2.4 MB/s | 9.9 kB     00:00    
(254/264): python3-wheel-0.40.0-4.fc39.noarch.r  11 MB/s | 161 kB     00:00    
(255/264): python3-urllib3-1.26.16-3.fc40.noarc  14 MB/s | 273 kB     00:00    
(256/264): xkbcomp-1.4.6-6.fc39.aarch64.rpm     5.9 MB/s |  97 kB     00:00    
(257/264): tk-8.6.13-1.fc40.aarch64.rpm          64 MB/s | 1.6 MB     00:00    
(258/264): xkeyboard-config-2.39-2.fc39.noarch.  94 MB/s | 962 kB     00:00    
(259/264): python3-scipy-1.11.1-1.fc39.aarch64. 177 MB/s |  15 MB     00:00    
(260/264): xml-common-0.6.3-61.fc39.noarch.rpm  1.4 MB/s |  31 kB     00:00    
(261/264): xorg-x11-proto-devel-2023.2-3.fc40.n  18 MB/s | 298 kB     00:00    
(262/264): xorg-x11-xauth-1.1.2-4.fc39.aarch64. 4.1 MB/s |  35 kB     00:00    
(263/264): xorg-x11-server-common-1.20.14-24.fc 2.9 MB/s |  35 kB     00:00    
(264/264): xorg-x11-server-Xvfb-1.20.14-24.fc39  36 MB/s | 879 kB     00:00    
--------------------------------------------------------------------------------
Total                                           112 MB/s | 107 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : xorg-x11-proto-devel-2023.2-3.fc40.noarch            1/264 
  Installing       : boost-system-1.81.0-6.fc40.aarch64                   2/264 
  Installing       : boost-chrono-1.81.0-6.fc40.aarch64                   3/264 
  Installing       : boost-thread-1.81.0-6.fc40.aarch64                   4/264 
  Installing       : libicu-73.2-2.fc39.aarch64                           5/264 
  Installing       : libglvnd-1:1.7.0-1.fc40.aarch64                      6/264 
  Installing       : expat-2.5.0-3.fc39.aarch64                           7/264 
  Installing       : libdrm-2.4.114-3.fc39.aarch64                        8/264 
  Installing       : libXau-1.0.11-4.fc40.aarch64                         9/264 
  Installing       : libxcb-1.13.1-12.fc39.aarch64                       10/264 
  Installing       : fonts-filesystem-1:2.0.5-12.fc39.noarch             11/264 
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Installed:
  abattis-cantarell-vf-fonts-0.301-10.fc39.noarch                               
  annobin-docs-12.26-1.fc40.noarch                                              
  annobin-plugin-gcc-12.26-1.fc40.aarch64                                       
  boost-1.81.0-6.fc40.aarch64                                                   
  boost-atomic-1.81.0-6.fc40.aarch64                                            
  boost-chrono-1.81.0-6.fc40.aarch64                                            
  boost-container-1.81.0-6.fc40.aarch64                                         
  boost-context-1.81.0-6.fc40.aarch64                                           
  boost-contract-1.81.0-6.fc40.aarch64                                          
  boost-coroutine-1.81.0-6.fc40.aarch64                                         
  boost-date-time-1.81.0-6.fc40.aarch64                                         
  boost-devel-1.81.0-6.fc40.aarch64                                             
  boost-fiber-1.81.0-6.fc40.aarch64                                             
  boost-filesystem-1.81.0-6.fc40.aarch64                                        
  boost-graph-1.81.0-6.fc40.aarch64                                             
  boost-iostreams-1.81.0-6.fc40.aarch64                                         
  boost-json-1.81.0-6.fc40.aarch64                                              
  boost-locale-1.81.0-6.fc40.aarch64                                            
  boost-log-1.81.0-6.fc40.aarch64                                               
  boost-math-1.81.0-6.fc40.aarch64                                              
  boost-nowide-1.81.0-6.fc40.aarch64                                            
  boost-numpy3-1.81.0-6.fc40.aarch64                                            
  boost-program-options-1.81.0-6.fc40.aarch64                                   
  boost-python3-1.81.0-6.fc40.aarch64                                           
  boost-random-1.81.0-6.fc40.aarch64                                            
  boost-regex-1.81.0-6.fc40.aarch64                                             
  boost-serialization-1.81.0-6.fc40.aarch64                                     
  boost-stacktrace-1.81.0-6.fc40.aarch64                                        
  boost-system-1.81.0-6.fc40.aarch64                                            
  boost-test-1.81.0-6.fc40.aarch64                                              
  boost-thread-1.81.0-6.fc40.aarch64                                            
  boost-timer-1.81.0-6.fc40.aarch64                                             
  boost-type_erasure-1.81.0-6.fc40.aarch64                                      
  boost-wave-1.81.0-6.fc40.aarch64                                              
  cairo-1.17.8-5.fc40.aarch64                                                   
  cmake-3.27.4-8.fc40.aarch64                                                   
  cmake-data-3.27.4-8.fc40.noarch                                               
  cmake-filesystem-3.27.4-8.fc40.aarch64                                        
  cmake-rpm-macros-3.27.4-8.fc40.noarch                                         
  cpp-13.2.1-3.fc40.aarch64                                                     
  default-fonts-core-sans-4.0-9.fc40.noarch                                     
  dejavu-sans-fonts-2.37-20.fc38.noarch                                         
  emacs-filesystem-1:29.1-1.fc40.noarch                                         
  expat-2.5.0-3.fc39.aarch64                                                    
  flexiblas-3.3.1-5.fc39.aarch64                                                
  flexiblas-netlib-3.3.1-5.fc39.aarch64                                         
  flexiblas-openblas-openmp-3.3.1-5.fc39.aarch64                                
  fontconfig-2.14.2-5.fc40.aarch64                                              
  fonts-filesystem-1:2.0.5-12.fc39.noarch                                       
  freeglut-3.4.0-4.fc39.aarch64                                                 
  freeglut-devel-3.4.0-4.fc39.aarch64                                           
  freetype-2.13.1-2.fc40.aarch64                                                
  fribidi-1.0.13-2.fc39.aarch64                                                 
  gc-8.2.2-4.fc39.aarch64                                                       
  gcc-13.2.1-3.fc40.aarch64                                                     
  gcc-c++-13.2.1-3.fc40.aarch64                                                 
  gcc-plugin-annobin-13.2.1-3.fc40.aarch64                                      
  gl-manpages-1.1-29.20190306.fc40.noarch                                       
  glib2-2.78.0-2.fc40.aarch64                                                   
  glibc-devel-2.38.9000-9.fc40.aarch64                                          
  gnutls-3.8.1-1.fc40.aarch64                                                   
  google-noto-fonts-common-20230801-3.fc40.noarch                               
  google-noto-sans-vf-fonts-20230801-3.fc40.noarch                              
  graphite2-1.3.14-12.fc39.aarch64                                              
  groff-base-1.23.0-2.fc39.aarch64                                              
  guile22-2.2.7-9.fc39.aarch64                                                  
  harfbuzz-8.2.1-1.fc40.aarch64                                                 
  jbigkit-libs-2.1-26.fc39.aarch64                                              
  jsoncpp-1.9.5-5.fc39.aarch64                                                  
  kernel-headers-6.6.0-0.rc2.git0.1.fc40.aarch64                                
  lcms2-2.15-2.fc40.aarch64                                                     
  libICE-1.0.10-12.fc40.aarch64                                                 
  libICE-devel-1.0.10-12.fc40.aarch64                                           
  libSM-1.2.3-14.fc40.aarch64                                                   
  libSM-devel-1.2.3-14.fc40.aarch64                                             
  libX11-1.8.6-3.fc40.aarch64                                                   
  libX11-common-1.8.6-3.fc40.noarch                                             
  libX11-devel-1.8.6-3.fc40.aarch64                                             
  libX11-xcb-1.8.6-3.fc40.aarch64                                               
  libXau-1.0.11-4.fc40.aarch64                                                  
  libXau-devel-1.0.11-4.fc40.aarch64                                            
  libXdmcp-1.1.3-12.fc40.aarch64                                                
  libXext-1.3.5-3.fc39.aarch64                                                  
  libXext-devel-1.3.5-3.fc39.aarch64                                            
  libXfixes-6.0.0-7.fc40.aarch64                                                
  libXfixes-devel-6.0.0-7.fc40.aarch64                                          
  libXfont2-2.0.3-16.fc40.aarch64                                               
  libXft-2.3.8-4.fc40.aarch64                                                   
  libXi-1.8.1-3.fc40.aarch64                                                    
  libXi-devel-1.8.1-3.fc40.aarch64                                              
  libXmu-1.1.4-4.fc40.aarch64                                                   
  libXmu-devel-1.1.4-4.fc40.aarch64                                             
  libXrender-0.9.11-4.fc40.aarch64                                              
  libXt-1.2.1-6.fc40.aarch64                                                    
  libXt-devel-1.2.1-6.fc40.aarch64                                              
  libXxf86vm-1.1.5-4.fc40.aarch64                                               
  libasan-13.2.1-3.fc40.aarch64                                                 
  libatomic-13.2.1-3.fc40.aarch64                                               
  libb2-0.98.1-9.fc39.aarch64                                                   
  libdrm-2.4.114-3.fc39.aarch64                                                 
  libdrm-devel-2.4.114-3.fc39.aarch64                                           
  libfontenc-1.1.6-3.fc40.aarch64                                               
  libgfortran-13.2.1-3.fc40.aarch64                                             
  libglvnd-1:1.7.0-1.fc40.aarch64                                               
  libglvnd-core-devel-1:1.7.0-1.fc40.aarch64                                    
  libglvnd-devel-1:1.7.0-1.fc40.aarch64                                         
  libglvnd-egl-1:1.7.0-1.fc40.aarch64                                           
  libglvnd-gles-1:1.7.0-1.fc40.aarch64                                          
  libglvnd-glx-1:1.7.0-1.fc40.aarch64                                           
  libglvnd-opengl-1:1.7.0-1.fc40.aarch64                                        
  libicu-73.2-2.fc39.aarch64                                                    
  libicu-devel-73.2-2.fc39.aarch64                                              
  libimagequant-4.0.1-5.fc39.aarch64                                            
  libjpeg-turbo-2.1.4-3.fc39.aarch64                                            
  liblerc-4.0.0-4.fc39.aarch64                                                  
  libmpc-1.3.1-3.fc39.aarch64                                                   
  libpng-2:1.6.40-1.fc40.aarch64                                                
  libqhull_r-1:8.0.2-2.fc40.aarch64                                             
  libraqm-0.8.0-5.fc39.aarch64                                                  
  libstdc++-devel-13.2.1-3.fc40.aarch64                                         
  libtiff-4.4.0-8.fc40.aarch64                                                  
  libtiff-devel-4.4.0-8.fc40.aarch64                                            
  libtool-ltdl-2.4.7-8.fc40.aarch64                                             
  libubsan-13.2.1-3.fc40.aarch64                                                
  libunwind-1.7.2-1.fc40.aarch64                                                
  libuv-1:1.46.0-2.fc39.aarch64                                                 
  libwayland-client-1.22.0-2.fc39.aarch64                                       
  libwayland-server-1.22.0-2.fc39.aarch64                                       
  libwebp-1.3.2-1.fc40.aarch64                                                  
  libxcb-1.13.1-12.fc39.aarch64                                                 
  libxcb-devel-1.13.1-12.fc39.aarch64                                           
  libxcrypt-devel-4.4.36-2.fc39.aarch64                                         
  libxkbfile-1.1.1-4.fc40.aarch64                                               
  libxshmfence-1.3-13.fc39.aarch64                                              
  libxslt-1.1.38-3.fc39.aarch64                                                 
  make-1:4.4.1-2.fc39.aarch64                                                   
  mesa-libEGL-23.2.0~rc3-1.fc40.aarch64                                         
  mesa-libGL-23.2.0~rc3-1.fc40.aarch64                                          
  mesa-libGL-devel-23.2.0~rc3-1.fc40.aarch64                                    
  mesa-libGLU-9.0.3-1.fc39.aarch64                                              
  mesa-libGLU-devel-9.0.3-1.fc39.aarch64                                        
  mesa-libgbm-23.2.0~rc3-1.fc40.aarch64                                         
  mesa-libglapi-23.2.0~rc3-1.fc40.aarch64                                       
  mpdecimal-2.5.1-7.fc39.aarch64                                                
  ncurses-6.4-7.20230520.fc40.aarch64                                           
  nettle-3.9.1-2.fc39.aarch64                                                   
  openblas-0.3.21-6.fc39.aarch64                                                
  openblas-openmp-0.3.21-6.fc39.aarch64                                         
  openjpeg2-2.5.0-4.fc39.aarch64                                                
  perl-AutoLoader-5.74-500.fc40.noarch                                          
  perl-B-1.88-500.fc40.aarch64                                                  
  perl-Carp-1.54-500.fc39.noarch                                                
  perl-Class-Struct-0.68-500.fc40.noarch                                        
  perl-Data-Dumper-2.188-501.fc39.aarch64                                       
  perl-Digest-1.20-500.fc39.noarch                                              
  perl-Digest-MD5-2.58-500.fc39.aarch64                                         
  perl-DynaLoader-1.54-500.fc40.aarch64                                         
  perl-Encode-4:3.19-500.fc39.aarch64                                           
  perl-Errno-1.37-500.fc40.aarch64                                              
  perl-Exporter-5.77-500.fc39.noarch                                            
  perl-Fcntl-1.15-500.fc40.aarch64                                              
  perl-File-Basename-2.86-500.fc40.noarch                                       
  perl-File-Path-2.18-500.fc39.noarch                                           
  perl-File-Temp-1:0.231.100-500.fc39.noarch                                    
  perl-File-stat-1.13-500.fc40.noarch                                           
  perl-FileHandle-2.05-500.fc40.noarch                                          
  perl-Getopt-Long-1:2.54-500.fc39.noarch                                       
  perl-Getopt-Std-1.13-500.fc40.noarch                                          
  perl-HTTP-Tiny-0.088-3.fc39.noarch                                            
  perl-IO-1.52-500.fc40.aarch64                                                 
  perl-IO-Socket-IP-0.42-1.fc39.noarch                                          
  perl-IO-Socket-SSL-2.083-3.fc39.noarch                                        
  perl-IPC-Open3-1.22-500.fc40.noarch                                           
  perl-MIME-Base64-3.16-500.fc39.aarch64                                        
  perl-Mozilla-CA-20230821-1.fc40.noarch                                        
  perl-Net-SSLeay-1.92-10.fc39.aarch64                                          
  perl-POSIX-2.13-500.fc40.aarch64                                              
  perl-PathTools-3.89-500.fc39.aarch64                                          
  perl-Pod-Escapes-1:1.07-501.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-501.fc39.noarch                                      
  perl-Pod-Simple-1:3.45-4.fc39.noarch                                          
  perl-Pod-Usage-4:2.03-500.fc39.noarch                                         
  perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64                                
  perl-SelectSaver-1.02-500.fc40.noarch                                         
  perl-Socket-4:2.037-3.fc39.aarch64                                            
  perl-Storable-1:3.32-500.fc39.aarch64                                         
  perl-Symbol-1.09-500.fc40.noarch                                              
  perl-Term-ANSIColor-5.01-501.fc39.noarch                                      
  perl-Term-Cap-1.18-500.fc39.noarch                                            
  perl-Text-ParseWords-3.31-500.fc39.noarch                                     
  perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch                                   
  perl-Time-Local-2:1.350-3.fc39.noarch                                         
  perl-URI-5.21-1.fc40.noarch                                                   
  perl-base-2.27-500.fc40.noarch                                                
  perl-constant-1.33-501.fc39.noarch                                            
  perl-if-0.61.000-500.fc40.noarch                                              
  perl-interpreter-4:5.38.0-500.fc40.aarch64                                    
  perl-libnet-3.15-501.fc39.noarch                                              
  perl-libs-4:5.38.0-500.fc40.aarch64                                           
  perl-locale-1.10-500.fc40.noarch                                              
  perl-macros-4:5.38.0-500.fc40.noarch                                          
  perl-mro-1.28-500.fc40.aarch64                                                
  perl-overload-1.37-500.fc40.noarch                                            
  perl-overloading-0.02-500.fc40.noarch                                         
  perl-parent-1:0.241-500.fc39.noarch                                           
  perl-podlators-1:5.01-500.fc39.noarch                                         
  perl-vars-1.05-500.fc40.noarch                                                
  pixman-0.42.2-2.fc39.aarch64                                                  
  pybind11-devel-2.11.1-1.fc39.aarch64                                          
  pyproject-rpm-macros-1.9.0-2.fc39.noarch                                      
  python-pip-wheel-23.2.1-1.fc39.noarch                                         
  python-rpm-macros-3.12-4.fc40.noarch                                          
  python3-3.12.0~rc3-1.fc40.aarch64                                             
  python3-appdirs-1.4.4-11.fc39.noarch                                          
  python3-brotli-1.1.0-1.fc40.aarch64                                           
  python3-cairo-1.24.0-2.fc39.aarch64                                           
  python3-charset-normalizer-3.2.0-2.fc39.noarch                                
  python3-contourpy-1.1.0-2.fc39.aarch64                                        
  python3-cycler-0.11.0-9.fc39.noarch                                           
  python3-dateutil-1:2.8.2-10.fc39.noarch                                       
  python3-devel-3.12.0~rc3-1.fc40.aarch64                                       
  python3-flaky-3.7.0-12.fc39.noarch                                            
  python3-fonttools-4.42.1-1.fc40.aarch64                                       
  python3-fs-2.4.16-5.fc39.noarch                                               
  python3-idna-3.4-5.fc40.noarch                                                
  python3-kiwisolver-1.4.5-1.fc40.aarch64                                       
  python3-libs-3.12.0~rc3-1.fc40.aarch64                                        
  python3-lxml-4.9.3-2.fc39.aarch64                                             
  python3-matplotlib-3.8.0-1.fc40.aarch64                                       
  python3-matplotlib-data-3.8.0-1.fc40.noarch                                   
  python3-matplotlib-data-fonts-3.8.0-1.fc40.noarch                             
  python3-matplotlib-tk-3.8.0-1.fc40.aarch64                                    
  python3-numpy-1:1.24.4-2.fc39.aarch64                                         
  python3-numpy-f2py-1:1.24.4-2.fc39.aarch64                                    
  python3-olefile-0.46-21.fc39.noarch                                           
  python3-packaging-23.1-5.fc40.noarch                                          
  python3-pillow-10.0.1-1.fc40.aarch64                                          
  python3-pillow-tk-10.0.1-1.fc40.aarch64                                       
  python3-pooch-1.5.2-12.fc39.noarch                                            
  python3-pyparsing-3.0.9-11.fc39.noarch                                        
  python3-pysocks-1.7.1-20.fc39.noarch                                          
  python3-requests-2.28.2-6.fc40.noarch                                         
  python3-rpm-generators-14-7.fc39.noarch                                       
  python3-rpm-macros-3.12-4.fc40.noarch                                         
  python3-scipy-1.11.1-1.fc39.aarch64                                           
  python3-setuptools-67.7.2-7.fc40.noarch                                       
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-tkinter-3.12.0~rc3-1.fc40.aarch64                                     
  python3-urllib3-1.26.16-3.fc40.noarch                                         
  python3-urllib3+socks-1.26.16-3.fc40.noarch                                   
  python3-wheel-1:0.40.0-4.fc39.noarch                                          
  rhash-1.4.3-3.fc39.aarch64                                                    
  tcl-1:8.6.13-1.fc40.aarch64                                                   
  tk-1:8.6.13-1.fc40.aarch64                                                    
  tzdata-2023c-3.fc40.noarch                                                    
  vim-filesystem-2:9.0.1882-1.fc40.noarch                                       
  xkbcomp-1.4.6-6.fc39.aarch64                                                  
  xkeyboard-config-2.39-2.fc39.noarch                                           
  xml-common-0.6.3-61.fc39.noarch                                               
  xorg-x11-proto-devel-2023.2-3.fc40.noarch                                     
  xorg-x11-server-Xvfb-1.20.14-24.fc39.aarch64                                  
  xorg-x11-server-common-1.20.14-24.fc39.aarch64                                
  xorg-x11-xauth-1:1.1.2-4.fc39.aarch64                                         
  zlib-ng-compat-devel-2.1.3-5.fc40.aarch64                                     

Complete!
Finish: build setup for smoldyn-2.72-2.fc40.src.rpm
Start: rpmbuild smoldyn-2.72-2.fc40.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1692316800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.JCkAAe
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf Smoldyn-2.72
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.72.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd Smoldyn-2.72
+ rm -rf /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (smoldyn-fix_libpaths.patch):
+ echo 'Patch #0 (smoldyn-fix_libpaths.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0
patching file CMakeLists.txt
Patch #1 (smoldyn-freeglut.patch):
+ echo 'Patch #1 (smoldyn-freeglut.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 370 (offset 44 lines).
Patch #2 (smoldyn-create_soname.patch):
+ echo 'Patch #2 (smoldyn-create_soname.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 490 (offset 5 lines).
Hunk #2 succeeded at 522 (offset 52 lines).
Patch #3 (smoldyn-avoid_automatic_wheel.patch):
+ echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0
patching file source/python/CMakeLists.txt
Hunk #1 succeeded at 20 (offset -3 lines).
+ rm -rf source/MSVClibs
+ rm -rf source/pybind11
+ rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake
+ rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen
+ rm -rf source/NextSubVolume/boost_include
+ rm -f 'source/vtk/*'
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.c' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';'
+ sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt
+ cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt
+ cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt
+ find -name '*.pyc' -delete
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.h9rTLr
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.72 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF
-- The CXX compiler identification is GNU 13.2.1
-- The C compiler identification is GNU 13.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Smoldyn version is set to: '2.72'
-- Compiling for Smoldyn: ON
-- Compiling for Libsmoldyn: ON
-- Option to compile Smoldyn for VCell: OFF
-- Option to cross-compile for Windows using MinGW: OFF
-- Option to include NextSubvolume: ON
-- Option to include VTK: OFF
-- Option to compile with static libraries: OFF
-- Option to include OpenGL support: ON
-- Option to include LibTiff: ON
-- Option to include Zlib: ON
-- Option to incude Python module: ON
-- Option to run Libsmoldyn examples: OFF
-- Option to build documentation: OFF
-- Performing Test C_FLAG_EXISTS
-- Performing Test C_FLAG_EXISTS - Success
-- Performing Test CXX_FLAG_EXISTS
-- Performing Test CXX_FLAG_EXISTS - Success
-- [COMPILER] Adding -Wno-unused-parameter
-- Build type: Release
-- Compiling on a Linux computer
-- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
-- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' 
-- Found OpenGL: /usr/lib64/libOpenGL.so   
-- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so'
-- Found GLUT: /usr/lib64/libglut.so  
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0")  
-- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so'
-- Found Zlib: '/usr/include', '/usr/lib64/libz.so'
-- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include'
-- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter Development Development.Module Development.Embed 
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.11.1")
-- [TEST] Found 15 test scripts
-- Configuring done (2.3s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    LIB_INSTALL_DIR
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build
+ /usr/bin/cmake --build redhat-linux-build -j4 --verbose
Change Dir: '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4
/usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.72 -B/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
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gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
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gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
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gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[  3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o
[  3%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o
[  3%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o
[  4%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/List.c
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/StructuredGrid.cpp
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Geometry.c
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Species.cpp
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cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/math2.c
[  7%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/opengl2.c
[  8%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/ReactionEquation.cpp
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cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.cpp
[ 11%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/parse.c
/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/parse.c: In function ‘Parse_ReadLine’:
/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/parse.c:382:60: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  382 |                                 while((ch=fgetc(pfp->fptr))!=EOF && ch!='\n' && ch!='\r');
      |                                                            ^~
[ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/queue.c
[ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o
[ 14%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Kairos.cpp
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.c
[ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Rn.c
[ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/RnSort.c
[ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/rxnparam.c
[ 19%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Io.cpp
[ 20%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/Geometry.cpp
[ 22%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SimCommand.c
[ 23%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Sphere.c
[ 24%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/nsvc.cpp
[ 25%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/string2.c
[ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SurfaceParam.c
[ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/Zn.c
/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/string2.c: In function ‘strmatheval’:
/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/string2.c:1415:9: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation]
 1415 |         strncpy(expr,expression,STRCHAR);
      |         ^
[ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT.c
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 29%] Built target Steve
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 29%] Built target nsv
/usr/bin/gmake  -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend
/usr/bin/gmake  -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend
/usr/bin/gmake  -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake  -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build
/usr/bin/gmake  -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build
/usr/bin/gmake  -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o
[ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o
[ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o
[ 34%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^~~~~~
[ 35%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
 1496 |                 CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
 1496 |                 CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
      |                                                             ^~
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
In file included from /usr/include/stdio.h:964,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
 1496 |                 CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
 1496 |                 CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
      |                                                             ^~
In file included from /usr/include/stdio.h:964,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
 1495 |                 CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
 1495 |                 CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
      |                                               ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
 1450 |                 CHECKS(er!=-2,"invalid '%s' monomer name",str1);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
 1450 |                 CHECKS(er!=-2,"invalid '%s' monomer name",str1);
      |                                         ^~
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
 1496 |                 CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
 1496 |                 CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
      |                                                             ^~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
In file included from /usr/include/stdio.h:964,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
 1442 |                         CHECKS(!er,"error adding monomer %s",str1); }}
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
 1442 |                         CHECKS(!er,"error adding monomer %s",str1); }}
      |                                                          ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
 1441 |                         CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
 1495 |                 CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
 1441 |                         CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
      |                                                      ^~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
 1495 |                 CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
      |                                               ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
 1450 |                 CHECKS(er!=-2,"invalid '%s' monomer name",str1);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
 1440 |                         CHECKS(er!=-1,"out of memory adding monomer %s",str1);
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
 1450 |                 CHECKS(er!=-2,"invalid '%s' monomer name",str1);
      |                                         ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
 1442 |                         CHECKS(!er,"error adding monomer %s",str1); }}
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
 1440 |                         CHECKS(er!=-1,"out of memory adding monomer %s",str1);
      |                                                                     ^~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
 1442 |                         CHECKS(!er,"error adding monomer %s",str1); }}
      |                                                          ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
 1441 |                         CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
 1441 |                         CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
      |                                                      ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
 1440 |                         CHECKS(er!=-1,"out of memory adding monomer %s",str1);
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
 1440 |                         CHECKS(er!=-1,"out of memory adding monomer %s",str1);
      |                                                                     ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
 1495 |                 CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
 1495 |                 CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
      |                                               ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
 1450 |                 CHECKS(er!=-2,"invalid '%s' monomer name",str1);
      |                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
 1450 |                 CHECKS(er!=-2,"invalid '%s' monomer name",str1);
      |                                         ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
 1442 |                         CHECKS(!er,"error adding monomer %s",str1); }}
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
 1442 |                         CHECKS(!er,"error adding monomer %s",str1); }}
      |                                                          ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
 1441 |                         CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
 1441 |                         CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
      |                                                      ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
 1440 |                         CHECKS(er!=-1,"out of memory adding monomer %s",str1);
      |                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
 1440 |                         CHECKS(er!=-1,"out of memory adding monomer %s",str1);
      |                                                                     ^~
In function ‘snprintf’,
    inlined from ‘bngreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c
[ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
[ 39%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
  894 |                 CHECKS(s>=0,"surface name '%s' not recognized",nm);
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
  894 |                 CHECKS(s>=0,"surface name '%s' not recognized",nm);
      |                                            ^~
In file included from /usr/include/stdio.h:964,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
    inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/random2.h:17,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^~~~~~
[ 40%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c
[ 41%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c
[ 43%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcmd.c
[ 44%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c
[ 45%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c
[ 46%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolport.c
[ 48%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c
[ 49%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
[ 50%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
[ 51%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolreact.c
[ 53%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolrule.c
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
  894 |                 CHECKS(s>=0,"surface name '%s' not recognized",nm);
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
  894 |                 CHECKS(s>=0,"surface name '%s' not recognized",nm);
      |                                            ^~
In file included from /usr/include/stdio.h:964,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
    inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
  894 |                 CHECKS(s>=0,"surface name '%s' not recognized",nm);
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
  894 |                 CHECKS(s>=0,"surface name '%s' not recognized",nm);
      |                                            ^~
In file included from /usr/include/stdio.h:964,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
    inlined from ‘compartreadstring’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:54:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
[ 54%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c
[ 55%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o
/usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
[ 56%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolfilament.c
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
  166 |                 sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
      |                                                          ^~              ~~~~~~~~~~~
In file included from /usr/include/stdio.h:964,
                 from /usr/include/c++/13/cstdio:42,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
    inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 58%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c
[ 59%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolgraphics.c
[ 60%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c
[ 61%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c
[ 62%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolmolec.c
[ 64%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o
/usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c
[ 65%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o
/usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
[ 66%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolport.c
[ 67%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolport.c
[ 69%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c
[ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolreact.c
[ 71%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smollattice.c
[ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolrule.c
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[ 75%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
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[ 76%] Built target smoldyn_static
[ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:27:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes]
   20 | class CallbackFunc
      |       ^~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes]
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes]
[ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c
[ 80%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
[ 81%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolrule.c
[ 82%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o
/usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
In file included from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp:15:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes]
   20 | class CallbackFunc
      |       ^~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes]
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes]
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
  166 |                 sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
      |                                                          ^~              ~~~~~~~~~~~
In file included from /usr/include/stdio.h:964,
                 from /usr/include/c++/13/cstdio:42,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
    inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
  166 |                 sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
      |                                                          ^~              ~~~~~~~~~~~
In file included from /usr/include/stdio.h:964,
                 from /usr/include/c++/13/cstdio:42,
                 from /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
    inlined from ‘simParseError’ at /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
[ 83%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolsurface.c
[ 85%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolwall.c
[ 86%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o
/usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
[ 87%] Linking CXX shared library libsmoldyn_shared.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.72 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o  /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so 
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr]
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’
  739 |     NextSubvolumeMethod* nsv; // nsv class
      |                          ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
  739 |     NextSubvolumeMethod* nsv; // nsv class
      |                          ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
  137 | class NextSubvolumeMethod
      |       ^
[ 88%] Linking CXX static library lib_pysmoldyn.a
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1
/usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
/usr/bin/ranlib lib_pysmoldyn.a
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 88%] Built target _pysmoldyn
/usr/bin/gmake  -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake  -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 90%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden   -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/CallbackFunc.cpp
[ 91%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden   -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/Command.cpp
[ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden   -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/Simulation.cpp
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
[ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden   -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/python/module.cpp
/usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.72 libsmoldyn_shared.so.2 libsmoldyn_shared.so
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 93%] Built target smoldyn_shared
/usr/bin/gmake  -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake  -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 95%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o
/usr/bin/g++  -I/builddir/build/BUILD/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14   -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.cpp
[ 96%] Linking CXX executable smoldyn
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn  libsmoldyn_shared.so.2.72 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so 
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 96%] Built target smoldyn
[ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared  -o /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o  lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so 
/builddir/build/BUILD/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1045:16: warning: type ‘struct simstruct’ violates the C++ One Definition Rule [-Wodr]
 1045 | typedef struct simstruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a different type is defined in another translation unit
 1045 | typedef struct simstruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1106:19: note: the first difference of corresponding definitions is field ‘callbacks’
 1106 |     CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback.
      |                   ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a type with different number of fields is defined in another translation unit
 1045 | typedef struct simstruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr]
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’
  739 |     NextSubvolumeMethod* nsv; // nsv class
      |                          ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
  739 |     NextSubvolumeMethod* nsv; // nsv class
      |                          ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’
  714 | typedef struct latticestruct
      |                ^
/builddir/build/BUILD/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
  137 | class NextSubvolumeMethod
      |       ^
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  783 |                                 bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
      |                                                       ^
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[ 97%] Built target _smoldyn
/usr/bin/gmake  -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend
/usr/bin/gmake  -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.72 /builddir/build/BUILD/Smoldyn-2.72/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake  -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build
/usr/bin/gmake  -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build
[100%] Copying python source tree to binary directory
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build
cd /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.72/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py/smoldyn
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[100%] Built target copy_python_tree
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-aarch64-cpython-312
creating build/lib.linux-aarch64-cpython-312/smoldyn
copying smoldyn/__init__.py -> build/lib.linux-aarch64-cpython-312/smoldyn
copying smoldyn/__main__.py -> build/lib.linux-aarch64-cpython-312/smoldyn
copying smoldyn/smoldyn.py -> build/lib.linux-aarch64-cpython-312/smoldyn
copying smoldyn/types.py -> build/lib.linux-aarch64-cpython-312/smoldyn
copying smoldyn/utils.py -> build/lib.linux-aarch64-cpython-312/smoldyn
creating build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/__init__.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/__main__.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/_version.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/combine.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/data_model.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/utils.py -> build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators
copying smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so -> build/lib.linux-aarch64-cpython-312/smoldyn
running build_ext
/usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer, pypa/build or
        other standards-based tools.

        Follow the current Python packaging guidelines when building
        Python RPM packages.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
        and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
        ********************************************************************************

!!
  self.initialize_options()
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/smoldyn
copying build/lib.linux-aarch64-cpython-312/smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/smoldyn
creating build/bdist.linux-aarch64/wheel/smoldyn/biosimulators
copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators
copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators
copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators
copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators
copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators
copying build/lib.linux-aarch64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-aarch64/wheel/smoldyn/biosimulators
copying build/lib.linux-aarch64-cpython-312/smoldyn/utils.py -> build/bdist.linux-aarch64/wheel/smoldyn
copying build/lib.linux-aarch64-cpython-312/smoldyn/types.py -> build/bdist.linux-aarch64/wheel/smoldyn
copying build/lib.linux-aarch64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-aarch64/wheel/smoldyn
copying build/lib.linux-aarch64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-aarch64/wheel/smoldyn
copying build/lib.linux-aarch64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-aarch64/wheel/smoldyn
running install_egg_info
running egg_info
creating smoldyn.egg-info
writing smoldyn.egg-info/PKG-INFO
writing dependency_links to smoldyn.egg-info/dependency_links.txt
writing requirements to smoldyn.egg-info/requires.txt
writing top-level names to smoldyn.egg-info/top_level.txt
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
reading manifest file 'smoldyn.egg-info/SOURCES.txt'
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
Copying smoldyn.egg-info to build/bdist.linux-aarch64/wheel/smoldyn-2.72-py3.12.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/smoldyn-2.72.dist-info/WHEEL
creating '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/smoldyn-2.72-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'smoldyn/__init__.py'
adding 'smoldyn/__main__.py'
adding 'smoldyn/_smoldyn.cpython-312-aarch64-linux-gnu.so'
adding 'smoldyn/smoldyn.py'
adding 'smoldyn/types.py'
adding 'smoldyn/utils.py'
adding 'smoldyn/biosimulators/__init__.py'
adding 'smoldyn/biosimulators/__main__.py'
adding 'smoldyn/biosimulators/_version.py'
adding 'smoldyn/biosimulators/combine.py'
adding 'smoldyn/biosimulators/data_model.py'
adding 'smoldyn/biosimulators/utils.py'
adding 'smoldyn-2.72.dist-info/METADATA'
adding 'smoldyn-2.72.dist-info/WHEEL'
adding 'smoldyn-2.72.dist-info/top_level.txt'
adding 'smoldyn-2.72.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
gmake[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
[100%] Built target wheel
gmake[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CMakeFiles 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.TYjAvW
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64
++ dirname /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
+ DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64
+ /usr/bin/cmake --install redhat-linux-build
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/bin/smoldyn
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/libsmoldyn_shared.so.2.72
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/libsmoldyn_shared.so.2
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/libsmoldyn_shared.so
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/libsmoldyn_static.a
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/include/smoldyn/libsmoldyn.h
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/include/smoldyn/smoldyn.h
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/include/smoldyn/smoldynconfigure.h
+ pushd redhat-linux-build/py
~/build/BUILD/Smoldyn-2.72/redhat-linux-build/py ~/build/BUILD/Smoldyn-2.72
+ mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12/site-packages
+ cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12/site-packages/
+ popd
~/build/BUILD/Smoldyn-2.72
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2.72-2.fc40 --unique-debug-suffix -2.72-2.fc40.aarch64 --unique-debug-src-base smoldyn-2.72-2.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.72
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.72-2.fc40.aarch64
3558 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.6DPlWh
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
~/build/BUILD/Smoldyn-2.72/redhat-linux-build ~/build/BUILD/Smoldyn-2.72
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
+ pushd redhat-linux-build
+ export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64
+ LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64
+ export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/lib64/python3.12/site-packages
+ xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:424 Here: 424

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:709 UpdateCTestConfiguration  from :/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:436 Here: 436

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CTestCustom.cmake

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/CTestCustom.ctest

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:709 UpdateCTestConfiguration  from :/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:408 Test project /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_actions

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_api

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_biosimulators

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_concurrent_simulation

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_func

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_var

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_in_array

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_outputfile

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_getters

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_issue_118

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_libsmoldyn

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_multiple_iterations

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_prd_placement

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sanity

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sim_from_file

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/source/python

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:1414 Checking test dependency graph...

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:1443 Checking test dependency graph end

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 2

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:526     Start  2: test_api

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:687 
2: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_api.py"

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: 

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 2:  PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 2:  SMOLDYN_NO_PROMPT=1

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:806 2: Test timeout computed to be: 10000000

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:985 1/3 Test  #2: test_api .........................
/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:988 Testing test_api ... 
/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:256    Passed    0.26 sec

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 3

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:526     Start  3: test_biosimulators

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:687 
3: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_biosimulators.py"

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: 

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 3:  PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 3:  SMOLDYN_NO_PROMPT=1

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:806 3: Test timeout computed to be: 10000000

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: ----------------------------------------------------------------------

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: 

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24)

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:985 2/3 Test  #3: test_biosimulators ...............
/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:988 Testing test_biosimulators ... 
/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:256    Passed    0.29 sec

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 14

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:526     Start 14: test_sanity

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:687 
14: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.72/tests/test_sanity.py"

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.72/tests

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: 

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 14:  PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:708 14:  SMOLDYN_NO_PROMPT=1

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:806 14: Test timeout computed to be: 10000000

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.72/redhat-linux-build/py/smoldyn/__init__.py

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: <smoldyn._smoldyn.simstruct object at 0xffffaf495bf0>

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:39 14: (<ErrorCode.ok: 0>, '')

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:985 3/3 Test #14: test_sanity ......................
/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:988 Testing test_sanity ... 
/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestRunTest.cxx:256    Passed    0.23 sec

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/cmCTest.cxx:309    Current_Time: Sep 23 08:57 UTC

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:447 
The following tests passed:

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:452 	test_api

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:452 	test_biosimulators

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:452 	test_sanity

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:613 
100% tests passed, 0 tests failed out of 3

/builddir/build/BUILD/cmake-3.27.4/Source/CTest/cmCTestTestHandler.cxx:629 
Total Test time (real) =   0.79 sec
+ popd
+ RPM_EC=0
~/build/BUILD/Smoldyn-2.72
++ jobs -p
+ exit 0
Processing files: smoldyn-2.72-2.fc40.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.hie3Dp
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.72
+ DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/README.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.72-2.fc40 smoldyn(aarch-64) = 2.72-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-doc-2.72-2.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.8zetJT
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.72
+ DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/BioNetGen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/CMakeLists.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/Doxyfile.in /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/README.md /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/SmolCrowd /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/SmolEmulate /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/Smoldyn /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/_static /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/build_doxygen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/conf.py /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/doxygen /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/examples /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/index.rst /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/libSteve /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/python /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/requirements.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/tikz /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/user /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/doc/smoldyn-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: smoldyn-doc = 2.72-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-libs-2.72-2.fc40.aarch64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.rxuKZ1
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.72
+ LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/License.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/LICENSE /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/smoldyn-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.72-2.fc40 smoldyn-libs(aarch-64) = 2.72-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-libs-devel-2.72-2.fc40.aarch64
Provides: smoldyn-libs-devel = 2.72-2.fc40 smoldyn-libs-devel(aarch-64) = 2.72-2.fc40 smoldyn-libs-static = 0:2.72-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libsmoldyn_shared.so.2()(64bit)
Processing files: python3-smoldyn-2.72-2.fc40.aarch64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.2BVd5R
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.72
+ LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/License.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.72/LICENSE /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64/usr/share/licenses/python3-smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-smoldyn = 2.72-2.fc40 python3-smoldyn = 2.72-2.fc40 python3-smoldyn(aarch-64) = 2.72-2.fc40 python3.12-smoldyn = 2.72-2.fc40 python3.12dist(smoldyn) = 2.72 python3dist(smoldyn) = 2.72
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.12 rtld(GNU_HASH)
Obsoletes: python-smoldyn < 2.72-2.fc40
Processing files: smoldyn-debugsource-2.72-2.fc40.aarch64
Provides: smoldyn-debugsource = 2.72-2.fc40 smoldyn-debugsource(aarch-64) = 2.72-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-debuginfo-2.72-2.fc40.aarch64
Provides: debuginfo(build-id) = a4a19cee4bf132b7558d271d1dac48cab3c2332c smoldyn-debuginfo = 2.72-2.fc40 smoldyn-debuginfo(aarch-64) = 2.72-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(aarch-64) = 2.72-2.fc40
Processing files: smoldyn-libs-debuginfo-2.72-2.fc40.aarch64
Provides: debuginfo(build-id) = c0e303e51a4deb47c1bffa7a9acda9195dae457b libsmoldyn_shared.so.2.72-2.72-2.fc40.aarch64.debug()(64bit) smoldyn-libs-debuginfo = 2.72-2.fc40 smoldyn-libs-debuginfo(aarch-64) = 2.72-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(aarch-64) = 2.72-2.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64
Wrote: /builddir/build/RPMS/python3-smoldyn-2.72-2.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.72-2.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-2.72-2.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/smoldyn-2.72-2.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.72-2.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.72-2.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.72-2.fc40.aarch64.rpm
Wrote: /builddir/build/RPMS/smoldyn-doc-2.72-2.fc40.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.H3GCtY
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.72
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.72-2.fc40.aarch64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Llcv4a
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/Smoldyn-2.72-SPECPARTS
+ rm -rf Smoldyn-2.72 Smoldyn-2.72.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild smoldyn-2.72-2.fc40.src.rpm
Finish: build phase for smoldyn-2.72-2.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-aarch64-1695459271.609342/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.72-2.fc40.src.rpm) Config(child) 1 minutes 46 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "smoldyn",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "aarch64"
        },
        {
            "name": "python3-smoldyn",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "aarch64"
        },
        {
            "name": "smoldyn",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "src"
        },
        {
            "name": "smoldyn-doc",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "noarch"
        },
        {
            "name": "smoldyn-debuginfo",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "aarch64"
        },
        {
            "name": "smoldyn-libs",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "aarch64"
        },
        {
            "name": "smoldyn-libs-debuginfo",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "aarch64"
        },
        {
            "name": "smoldyn-libs-devel",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "aarch64"
        },
        {
            "name": "smoldyn-debugsource",
            "epoch": null,
            "version": "2.72",
            "release": "2.fc40",
            "arch": "aarch64"
        }
    ]
}
RPMResults finished