Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c199' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6407706-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64
Version: 0.69
PID: 11506
Logging PID: 11507
Task:
{'appstream': False,
'background': True,
'build_id': 6407706,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': '9b1dac36fddb7e5ea6b3f8e5a2f28ce7a439acc5',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/staden-io_lib',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'staden-io_lib',
'package_version': '1.14.8-2',
'project_dirname': 'zlib-ng-compat-mpb',
'project_name': 'zlib-ng-compat-mpb',
'project_owner': 'tuliom',
'repo_priority': None,
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-x86_64/',
'id': 'copr_base',
'name': 'Copr repository',
'priority': None}],
'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom',
'source_json': {},
'source_type': None,
'submitter': 'tuliom',
'tags': [],
'task_id': '6407706-fedora-rawhide-x86_64',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/staden-io_lib /var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/staden-io_lib', '/var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib'...
Running: git checkout 9b1dac36fddb7e5ea6b3f8e5a2f28ce7a439acc5 --
cmd: ['git', 'checkout', '9b1dac36fddb7e5ea6b3f8e5a2f28ce7a439acc5', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib
rc: 0
stdout:
stderr: Note: switching to '9b1dac36fddb7e5ea6b3f8e5a2f28ce7a439acc5'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 9b1dac3 automatic import of staden-io_lib
Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading io_lib-1.14.8.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o io_lib-1.14.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/staden-io_lib/io_lib-1.14.8.tar.gz/md5/fe5ee6aaec8111a5bc3ac584a0c0c0c7/io_lib-1.14.8.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 2165k 100 2165k 0 0 19.5M 0 --:--:-- --:--:-- --:--:-- 19.5M
INFO: Reading stdout from command: md5sum io_lib-1.14.8.tar.gz
Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib/staden-io_lib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1694933262.896232 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.1 starting (python version = 3.11.3, NVR = mock-5.1-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib/staden-io_lib.spec) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.1
INFO: Mock Version: 5.1
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1694933262.896232/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1694933262.896232/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/8e8de4cfa94bc388bf99916cb4d13fbc38da0db8621fab19d14878b7d440b777/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/8e8de4cfa94bc388bf99916cb4d13fbc38da0db8621fab19d14878b7d440b777/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 4.6 MB/s | 465 kB 00:00
fedora 2.4 MB/s | 73 MB 00:30
Package python3-dnf-4.16.2-4.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k
Installing dependencies:
dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k
python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k
python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k
python3-distro noarch 1.8.0-6.fc39 fedora 49 k
python3-six noarch 1.16.0-12.fc39 fedora 41 k
python3-systemd x86_64 235-5.fc39 fedora 107 k
Transaction Summary
================================================================================
Install 7 Packages
Total download size: 1.1 M
Installed size: 3.5 M
Downloading Packages:
(1/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm 190 kB/s | 155 kB 00:00
(2/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm 192 kB/s | 157 kB 00:00
(3/7): python3-distro-1.8.0-6.fc39.noarch.rpm 219 kB/s | 49 kB 00:00
(4/7): python3-six-1.16.0-12.fc39.noarch.rpm 275 kB/s | 41 kB 00:00
(5/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 239 kB/s | 355 kB 00:01
(6/7): python3-systemd-235-5.fc39.x86_64.rpm 288 kB/s | 107 kB 00:00
(7/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 304 kB/s | 293 kB 00:00
--------------------------------------------------------------------------------
Total 635 kB/s | 1.1 MB 00:01
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-systemd-235-5.fc39.x86_64 1/7
Installing : python3-six-1.16.0-12.fc39.noarch 2/7
Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7
Installing : python3-distro-1.8.0-6.fc39.noarch 4/7
Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 5/7
Installing : python3-dbus-1.3.2-4.fc39.x86_64 6/7
Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7
Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7
Verifying : dbus-libs-1:1.14.10-1.fc40.x86_64 1/7
Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7
Verifying : python3-dbus-1.3.2-4.fc39.x86_64 3/7
Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7
Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7
Verifying : python3-six-1.16.0-12.fc39.noarch 6/7
Verifying : python3-systemd-235-5.fc39.x86_64 7/7
Installed:
dbus-libs-1:1.14.10-1.fc40.x86_64
python3-dateutil-1:2.8.2-10.fc39.noarch
python3-dbus-1.3.2-4.fc39.x86_64
python3-distro-1.8.0-6.fc39.noarch
python3-dnf-plugins-core-4.4.2-1.fc39.noarch
python3-six-1.16.0-12.fc39.noarch
python3-systemd-235-5.fc39.x86_64
Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1694933262.896232/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 701 B/s | 1.5 kB 00:02
Copr repository 4.3 MB/s | 466 kB 00:00
fedora 319 kB/s | 9.2 kB 00:00
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing group/module packages:
bash x86_64 5.2.15-5.fc39 fedora 1.8 M
bzip2 x86_64 1.0.8-16.fc39 fedora 52 k
coreutils x86_64 9.4-1.fc40 fedora 1.1 M
cpio x86_64 2.14-4.fc39 fedora 279 k
diffutils x86_64 3.10-3.fc39 fedora 398 k
fedora-release-common noarch 40-0.7 fedora 18 k
findutils x86_64 1:4.9.0-6.fc40 fedora 492 k
gawk x86_64 5.2.2-2.fc39 fedora 1.1 M
glibc-minimal-langpack x86_64 2.38.9000-8.fc40 fedora 73 k
grep x86_64 3.11-5.fc40 fedora 298 k
gzip x86_64 1.12-6.fc39 fedora 166 k
info x86_64 7.0.3-3.fc39 fedora 182 k
patch x86_64 2.7.6-22.fc39 fedora 125 k
redhat-rpm-config noarch 270-1.fc40 copr_base 74 k
rpm-build x86_64 4.18.99-1.fc40 fedora 78 k
sed x86_64 4.8-14.fc39 fedora 306 k
shadow-utils x86_64 2:4.14.0-1.fc40 fedora 1.3 M
tar x86_64 2:1.35-2.fc40 fedora 864 k
unzip x86_64 6.0-62.fc39 fedora 184 k
util-linux x86_64 2.39.2-1.fc40 fedora 1.2 M
which x86_64 2.21-40.fc39 fedora 42 k
xz x86_64 5.4.4-1.fc39 fedora 556 k
Installing dependencies:
alternatives x86_64 1.25-1.fc39 fedora 39 k
ansible-srpm-macros noarch 1-11.fc39 fedora 21 k
audit-libs x86_64 3.1.2-4.fc40 fedora 117 k
authselect x86_64 1.4.2-3.fc39 fedora 144 k
authselect-libs x86_64 1.4.2-3.fc39 fedora 249 k
basesystem noarch 11-18.fc39 fedora 7.2 k
binutils x86_64 2.41-5.fc40 fedora 6.3 M
binutils-gold x86_64 2.41-5.fc40 fedora 796 k
bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k
ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k
coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M
cracklib x86_64 2.9.11-2.fc40 copr_base 83 k
crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k
curl x86_64 8.3.0-1.fc40 fedora 354 k
cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k
debugedit x86_64 5.0-10.fc39 fedora 77 k
dwz x86_64 0.15-3.fc39 fedora 134 k
ed x86_64 1.19-4.fc39 fedora 79 k
efi-srpm-macros noarch 5-9.fc39 fedora 22 k
elfutils x86_64 0.189-6.fc40 fedora 535 k
elfutils-debuginfod-client x86_64 0.189-6.fc40 fedora 38 k
elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k
elfutils-libelf x86_64 0.189-6.fc40 fedora 195 k
elfutils-libs x86_64 0.189-6.fc40 fedora 258 k
fedora-gpg-keys noarch 40-0.1 fedora 130 k
fedora-release noarch 40-0.7 fedora 8.0 k
fedora-release-identity-basic
noarch 40-0.7 fedora 8.8 k
fedora-repos noarch 40-0.1 fedora 9.4 k
fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k
file x86_64 5.45-1.fc40 fedora 49 k
file-libs x86_64 5.45-1.fc40 fedora 763 k
filesystem x86_64 3.18-6.fc39 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k
forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k
fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k
gdb-minimal x86_64 13.2-8.fc40 fedora 4.2 M
gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k
ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k
glibc x86_64 2.38.9000-8.fc40 fedora 2.2 M
glibc-common x86_64 2.38.9000-8.fc40 fedora 355 k
glibc-gconv-extra x86_64 2.38.9000-8.fc40 fedora 1.6 M
gmp x86_64 1:6.2.1-5.fc39 fedora 313 k
gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k
go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k
jansson x86_64 2.13.1-7.fc39 fedora 44 k
kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k
keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k
krb5-libs x86_64 1.21.2-1.fc40 fedora 765 k
libacl x86_64 2.3.1-9.fc40 fedora 23 k
libarchive x86_64 3.7.2-1.fc40 fedora 408 k
libattr x86_64 2.5.1-9.fc40 fedora 18 k
libblkid x86_64 2.39.2-1.fc40 fedora 116 k
libbrotli x86_64 1.1.0-1.fc40 fedora 336 k
libcap x86_64 2.48-7.fc39 fedora 68 k
libcap-ng x86_64 0.8.3-8.fc40 fedora 32 k
libcom_err x86_64 1.47.0-2.fc39 fedora 26 k
libcurl x86_64 8.3.0-1.fc40 fedora 344 k
libdb x86_64 5.3.28-58.fc40 fedora 759 k
libeconf x86_64 0.5.2-1.fc40 fedora 30 k
libevent x86_64 2.1.12-9.fc39 fedora 258 k
libfdisk x86_64 2.39.2-1.fc40 fedora 162 k
libffi x86_64 3.4.4-4.fc39 fedora 40 k
libgcc x86_64 13.2.1-1.fc39 fedora 109 k
libgomp x86_64 13.2.1-1.fc39 fedora 319 k
libidn2 x86_64 2.3.4-3.fc39 fedora 117 k
libmount x86_64 2.39.2-1.fc40 fedora 154 k
libnghttp2 x86_64 1.56.0-1.fc40 fedora 75 k
libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k
libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k
libpsl x86_64 0.21.2-4.fc39 fedora 63 k
libpwquality x86_64 1.4.5-6.fc39 fedora 120 k
libselinux x86_64 3.5-5.fc39 fedora 87 k
libsemanage x86_64 3.5-4.fc39 fedora 120 k
libsepol x86_64 3.5-2.fc39 fedora 324 k
libsigsegv x86_64 2.14-5.fc39 fedora 27 k
libsmartcols x86_64 2.39.2-1.fc40 fedora 67 k
libssh x86_64 0.10.5-2.fc39 fedora 211 k
libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k
libstdc++ x86_64 13.2.1-1.fc39 fedora 860 k
libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k
libtirpc x86_64 1.3.3-1.rc2.fc39 fedora 94 k
libunistring x86_64 1.1-5.fc40 fedora 543 k
libutempter x86_64 1.2.1-10.fc39 fedora 26 k
libuuid x86_64 2.39.2-1.fc40 fedora 28 k
libverto x86_64 0.3.2-6.fc39 fedora 20 k
libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k
libxml2 x86_64 2.11.5-1.fc40 fedora 698 k
libzstd x86_64 1.5.5-4.fc39 fedora 309 k
lua-libs x86_64 5.4.6-3.fc39 fedora 133 k
lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k
lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k
mpfr x86_64 4.2.0-3.fc39 fedora 344 k
ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k
ncurses-libs x86_64 6.4-7.20230520.fc40 fedora 337 k
ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k
openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k
openldap x86_64 2.6.6-1.fc39 fedora 255 k
openssl-libs x86_64 1:3.1.1-4.fc40 fedora 2.2 M
p11-kit x86_64 0.25.0-2.fc39 fedora 486 k
p11-kit-trust x86_64 0.25.0-2.fc39 fedora 142 k
package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k
pam x86_64 1.5.3-2.fc39 fedora 548 k
pam-libs x86_64 1.5.3-2.fc39 fedora 58 k
pcre2 x86_64 10.42-1.fc39.2 fedora 233 k
pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k
perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k
pkgconf x86_64 1.9.5-2.fc39 fedora 42 k
pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k
pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k
popt x86_64 1.19-3.fc39 fedora 66 k
publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k
pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k
python-srpm-macros noarch 3.12-4.fc40 fedora 25 k
qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k
qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k
readline x86_64 8.2-4.fc39 fedora 213 k
rpm x86_64 4.18.99-1.fc40 fedora 538 k
rpm-build-libs x86_64 4.18.99-1.fc40 fedora 96 k
rpm-libs x86_64 4.18.99-1.fc40 fedora 312 k
rpm-sequoia x86_64 1.5.0-1.fc40 fedora 883 k
rust-srpm-macros noarch 24-5.fc40 fedora 12 k
setup noarch 2.14.4-1.fc39 fedora 154 k
sqlite-libs x86_64 3.43.1-1.fc40 fedora 688 k
systemd-libs x86_64 254.1-2.fc40 fedora 688 k
tzdata noarch 2023c-3.fc40 fedora 718 k
util-linux-core x86_64 2.39.2-1.fc40 fedora 493 k
xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k
xz-libs x86_64 5.4.4-1.fc39 fedora 108 k
zip x86_64 3.0-38.fc39 fedora 266 k
zlib-ng-compat x86_64 2.1.3-3.fc40 copr_base 79 k
zstd x86_64 1.5.5-4.fc39 fedora 482 k
Installing Groups:
Buildsystem building group
Transaction Summary
================================================================================
Install 153 Packages
Total size: 53 M
Installed size: 182 M
Downloading Packages:
[SKIPPED] cracklib-2.9.11-2.fc40.x86_64.rpm: Already downloaded
[SKIPPED] redhat-rpm-config-270-1.fc40.noarch.rpm: Already downloaded
[SKIPPED] zlib-ng-compat-2.1.3-3.fc40.x86_64.rpm: Already downloaded
[SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded
[SKIPPED] audit-libs-3.1.2-4.fc40.x86_64.rpm: Already downloaded
[SKIPPED] authselect-1.4.2-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] authselect-libs-1.4.2-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded
[SKIPPED] bash-5.2.15-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] binutils-2.41-5.fc40.x86_64.rpm: Already downloaded
[SKIPPED] binutils-gold-2.41-5.fc40.x86_64.rpm: Already downloaded
[SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded
[SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch.rpm: Already downloaded
[SKIPPED] coreutils-9.4-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] coreutils-common-9.4-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] cpio-2.14-4.fc39.x86_64.rpm: Already downloaded
[SKIPPED] crypto-policies-20230731-1.git5ed06e0.fc39.noarch.rpm: Already downloaded
[SKIPPED] curl-8.3.0-1.fc40.x86_64.rpm: Already downloaded
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fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xA15B79CC:
Userid : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x18B8E74C:
Userid : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
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Installing : cracklib-2.9.11-2.fc40.x86_64 120/153
Installing : libpwquality-1.4.5-6.fc39.x86_64 121/153
Installing : authselect-1.4.2-3.fc39.x86_64 122/153
Installing : libnsl2-2.0.0-6.fc39.x86_64 123/153
Installing : pam-1.5.3-2.fc39.x86_64 124/153
Installing : libssh-0.10.5-2.fc39.x86_64 125/153
Installing : libarchive-3.7.2-1.fc40.x86_64 126/153
Installing : libevent-2.1.12-9.fc39.x86_64 127/153
Installing : openldap-2.6.6-1.fc39.x86_64 128/153
Installing : libcurl-8.3.0-1.fc40.x86_64 129/153
Installing : elfutils-libs-0.189-6.fc40.x86_64 130/153
Installing : elfutils-debuginfod-client-0.189-6.fc40.x86_64 131/153
Installing : binutils-gold-2.41-5.fc40.x86_64 132/153
Running scriptlet: binutils-gold-2.41-5.fc40.x86_64 132/153
Installing : binutils-2.41-5.fc40.x86_64 133/153
Running scriptlet: binutils-2.41-5.fc40.x86_64 133/153
Installing : elfutils-0.189-6.fc40.x86_64 134/153
Installing : gdb-minimal-13.2-8.fc40.x86_64 135/153
Installing : debugedit-5.0-10.fc39.x86_64 136/153
Installing : curl-8.3.0-1.fc40.x86_64 137/153
Installing : rpm-sequoia-1.5.0-1.fc40.x86_64 138/153
Installing : rpm-libs-4.18.99-1.fc40.x86_64 139/153
Running scriptlet: rpm-4.18.99-1.fc40.x86_64 140/153
Installing : rpm-4.18.99-1.fc40.x86_64 140/153
Installing : efi-srpm-macros-5-9.fc39.noarch 141/153
Installing : lua-srpm-macros-1-9.fc39.noarch 142/153
Installing : rpm-build-libs-4.18.99-1.fc40.x86_64 143/153
Installing : ansible-srpm-macros-1-11.fc39.noarch 144/153
Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 145/153
Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 146/153
Installing : go-srpm-macros-3.2.0-7.fc40.noarch 147/153
Installing : python-srpm-macros-3.12-4.fc40.noarch 148/153
Installing : redhat-rpm-config-270-1.fc40.noarch 149/153
Installing : rpm-build-4.18.99-1.fc40.x86_64 150/153
Installing : util-linux-2.39.2-1.fc40.x86_64 151/153
Installing : which-2.21-40.fc39.x86_64 152/153
Installing : info-7.0.3-3.fc39.x86_64 153/153
Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153
Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 153/153
Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 153/153
Running scriptlet: rpm-4.18.99-1.fc40.x86_64 153/153
Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153
Verifying : cracklib-2.9.11-2.fc40.x86_64 1/153
Verifying : redhat-rpm-config-270-1.fc40.noarch 2/153
Verifying : zlib-ng-compat-2.1.3-3.fc40.x86_64 3/153
Verifying : alternatives-1.25-1.fc39.x86_64 4/153
Verifying : ansible-srpm-macros-1-11.fc39.noarch 5/153
Verifying : audit-libs-3.1.2-4.fc40.x86_64 6/153
Verifying : authselect-1.4.2-3.fc39.x86_64 7/153
Verifying : authselect-libs-1.4.2-3.fc39.x86_64 8/153
Verifying : basesystem-11-18.fc39.noarch 9/153
Verifying : bash-5.2.15-5.fc39.x86_64 10/153
Verifying : binutils-2.41-5.fc40.x86_64 11/153
Verifying : binutils-gold-2.41-5.fc40.x86_64 12/153
Verifying : bzip2-1.0.8-16.fc39.x86_64 13/153
Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 14/153
Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 15/153
Verifying : coreutils-9.4-1.fc40.x86_64 16/153
Verifying : coreutils-common-9.4-1.fc40.x86_64 17/153
Verifying : cpio-2.14-4.fc39.x86_64 18/153
Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 19/153
Verifying : curl-8.3.0-1.fc40.x86_64 20/153
Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 21/153
Verifying : debugedit-5.0-10.fc39.x86_64 22/153
Verifying : diffutils-3.10-3.fc39.x86_64 23/153
Verifying : dwz-0.15-3.fc39.x86_64 24/153
Verifying : ed-1.19-4.fc39.x86_64 25/153
Verifying : efi-srpm-macros-5-9.fc39.noarch 26/153
Verifying : elfutils-0.189-6.fc40.x86_64 27/153
Verifying : elfutils-debuginfod-client-0.189-6.fc40.x86_64 28/153
Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 29/153
Verifying : elfutils-libelf-0.189-6.fc40.x86_64 30/153
Verifying : elfutils-libs-0.189-6.fc40.x86_64 31/153
Verifying : fedora-gpg-keys-40-0.1.noarch 32/153
Verifying : fedora-release-40-0.7.noarch 33/153
Verifying : fedora-release-common-40-0.7.noarch 34/153
Verifying : fedora-release-identity-basic-40-0.7.noarch 35/153
Verifying : fedora-repos-40-0.1.noarch 36/153
Verifying : fedora-repos-rawhide-40-0.1.noarch 37/153
Verifying : file-5.45-1.fc40.x86_64 38/153
Verifying : file-libs-5.45-1.fc40.x86_64 39/153
Verifying : filesystem-3.18-6.fc39.x86_64 40/153
Verifying : findutils-1:4.9.0-6.fc40.x86_64 41/153
Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 42/153
Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 43/153
Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 44/153
Verifying : gawk-5.2.2-2.fc39.x86_64 45/153
Verifying : gdb-minimal-13.2-8.fc40.x86_64 46/153
Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 47/153
Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 48/153
Verifying : glibc-2.38.9000-8.fc40.x86_64 49/153
Verifying : glibc-common-2.38.9000-8.fc40.x86_64 50/153
Verifying : glibc-gconv-extra-2.38.9000-8.fc40.x86_64 51/153
Verifying : glibc-minimal-langpack-2.38.9000-8.fc40.x86_64 52/153
Verifying : gmp-1:6.2.1-5.fc39.x86_64 53/153
Verifying : gnat-srpm-macros-6-3.fc39.noarch 54/153
Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 55/153
Verifying : grep-3.11-5.fc40.x86_64 56/153
Verifying : gzip-1.12-6.fc39.x86_64 57/153
Verifying : info-7.0.3-3.fc39.x86_64 58/153
Verifying : jansson-2.13.1-7.fc39.x86_64 59/153
Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 60/153
Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 61/153
Verifying : krb5-libs-1.21.2-1.fc40.x86_64 62/153
Verifying : libacl-2.3.1-9.fc40.x86_64 63/153
Verifying : libarchive-3.7.2-1.fc40.x86_64 64/153
Verifying : libattr-2.5.1-9.fc40.x86_64 65/153
Verifying : libblkid-2.39.2-1.fc40.x86_64 66/153
Verifying : libbrotli-1.1.0-1.fc40.x86_64 67/153
Verifying : libcap-2.48-7.fc39.x86_64 68/153
Verifying : libcap-ng-0.8.3-8.fc40.x86_64 69/153
Verifying : libcom_err-1.47.0-2.fc39.x86_64 70/153
Verifying : libcurl-8.3.0-1.fc40.x86_64 71/153
Verifying : libdb-5.3.28-58.fc40.x86_64 72/153
Verifying : libeconf-0.5.2-1.fc40.x86_64 73/153
Verifying : libevent-2.1.12-9.fc39.x86_64 74/153
Verifying : libfdisk-2.39.2-1.fc40.x86_64 75/153
Verifying : libffi-3.4.4-4.fc39.x86_64 76/153
Verifying : libgcc-13.2.1-1.fc39.x86_64 77/153
Verifying : libgomp-13.2.1-1.fc39.x86_64 78/153
Verifying : libidn2-2.3.4-3.fc39.x86_64 79/153
Verifying : libmount-2.39.2-1.fc40.x86_64 80/153
Verifying : libnghttp2-1.56.0-1.fc40.x86_64 81/153
Verifying : libnsl2-2.0.0-6.fc39.x86_64 82/153
Verifying : libpkgconf-1.9.5-2.fc39.x86_64 83/153
Verifying : libpsl-0.21.2-4.fc39.x86_64 84/153
Verifying : libpwquality-1.4.5-6.fc39.x86_64 85/153
Verifying : libselinux-3.5-5.fc39.x86_64 86/153
Verifying : libsemanage-3.5-4.fc39.x86_64 87/153
Verifying : libsepol-3.5-2.fc39.x86_64 88/153
Verifying : libsigsegv-2.14-5.fc39.x86_64 89/153
Verifying : libsmartcols-2.39.2-1.fc40.x86_64 90/153
Verifying : libssh-0.10.5-2.fc39.x86_64 91/153
Verifying : libssh-config-0.10.5-2.fc39.noarch 92/153
Verifying : libstdc++-13.2.1-1.fc39.x86_64 93/153
Verifying : libtasn1-4.19.0-3.fc39.x86_64 94/153
Verifying : libtirpc-1.3.3-1.rc2.fc39.x86_64 95/153
Verifying : libunistring-1.1-5.fc40.x86_64 96/153
Verifying : libutempter-1.2.1-10.fc39.x86_64 97/153
Verifying : libuuid-2.39.2-1.fc40.x86_64 98/153
Verifying : libverto-0.3.2-6.fc39.x86_64 99/153
Verifying : libxcrypt-4.4.36-2.fc39.x86_64 100/153
Verifying : libxml2-2.11.5-1.fc40.x86_64 101/153
Verifying : libzstd-1.5.5-4.fc39.x86_64 102/153
Verifying : lua-libs-5.4.6-3.fc39.x86_64 103/153
Verifying : lua-srpm-macros-1-9.fc39.noarch 104/153
Verifying : lz4-libs-1.9.4-4.fc39.x86_64 105/153
Verifying : mpfr-4.2.0-3.fc39.x86_64 106/153
Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 107/153
Verifying : ncurses-libs-6.4-7.20230520.fc40.x86_64 108/153
Verifying : ocaml-srpm-macros-8-2.fc39.noarch 109/153
Verifying : openblas-srpm-macros-2-14.fc39.noarch 110/153
Verifying : openldap-2.6.6-1.fc39.x86_64 111/153
Verifying : openssl-libs-1:3.1.1-4.fc40.x86_64 112/153
Verifying : p11-kit-0.25.0-2.fc39.x86_64 113/153
Verifying : p11-kit-trust-0.25.0-2.fc39.x86_64 114/153
Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 115/153
Verifying : pam-1.5.3-2.fc39.x86_64 116/153
Verifying : pam-libs-1.5.3-2.fc39.x86_64 117/153
Verifying : patch-2.7.6-22.fc39.x86_64 118/153
Verifying : pcre2-10.42-1.fc39.2.x86_64 119/153
Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 120/153
Verifying : perl-srpm-macros-1-51.fc39.noarch 121/153
Verifying : pkgconf-1.9.5-2.fc39.x86_64 122/153
Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 123/153
Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 124/153
Verifying : popt-1.19-3.fc39.x86_64 125/153
Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 126/153
Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 127/153
Verifying : python-srpm-macros-3.12-4.fc40.noarch 128/153
Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 129/153
Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 130/153
Verifying : readline-8.2-4.fc39.x86_64 131/153
Verifying : rpm-4.18.99-1.fc40.x86_64 132/153
Verifying : rpm-build-4.18.99-1.fc40.x86_64 133/153
Verifying : rpm-build-libs-4.18.99-1.fc40.x86_64 134/153
Verifying : rpm-libs-4.18.99-1.fc40.x86_64 135/153
Verifying : rpm-sequoia-1.5.0-1.fc40.x86_64 136/153
Verifying : rust-srpm-macros-24-5.fc40.noarch 137/153
Verifying : sed-4.8-14.fc39.x86_64 138/153
Verifying : setup-2.14.4-1.fc39.noarch 139/153
Verifying : shadow-utils-2:4.14.0-1.fc40.x86_64 140/153
Verifying : sqlite-libs-3.43.1-1.fc40.x86_64 141/153
Verifying : systemd-libs-254.1-2.fc40.x86_64 142/153
Verifying : tar-2:1.35-2.fc40.x86_64 143/153
Verifying : tzdata-2023c-3.fc40.noarch 144/153
Verifying : unzip-6.0-62.fc39.x86_64 145/153
Verifying : util-linux-2.39.2-1.fc40.x86_64 146/153
Verifying : util-linux-core-2.39.2-1.fc40.x86_64 147/153
Verifying : which-2.21-40.fc39.x86_64 148/153
Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 149/153
Verifying : xz-5.4.4-1.fc39.x86_64 150/153
Verifying : xz-libs-5.4.4-1.fc39.x86_64 151/153
Verifying : zip-3.0-38.fc39.x86_64 152/153
Verifying : zstd-1.5.5-4.fc39.x86_64 153/153
Installed:
alternatives-1.25-1.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.x86_64
authselect-1.4.2-3.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.x86_64
binutils-2.41-5.fc40.x86_64
binutils-gold-2.41-5.fc40.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.x86_64
coreutils-common-9.4-1.fc40.x86_64
cpio-2.14-4.fc39.x86_64
cracklib-2.9.11-2.fc40.x86_64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.x86_64
cyrus-sasl-lib-2.1.28-11.fc39.x86_64
debugedit-5.0-10.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.19-4.fc39.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.x86_64
elfutils-debuginfod-client-0.189-6.fc40.x86_64
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.x86_64
elfutils-libs-0.189-6.fc40.x86_64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.x86_64
file-libs-5.45-1.fc40.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-1:4.9.0-6.fc40.x86_64
fonts-srpm-macros-1:2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.x86_64
gdb-minimal-13.2-8.fc40.x86_64
gdbm-libs-1:1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.x86_64
glibc-common-2.38.9000-8.fc40.x86_64
glibc-gconv-extra-2.38.9000-8.fc40.x86_64
glibc-minimal-langpack-2.38.9000-8.fc40.x86_64
gmp-1:6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.0.3-3.fc39.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.x86_64
krb5-libs-1.21.2-1.fc40.x86_64
libacl-2.3.1-9.fc40.x86_64
libarchive-3.7.2-1.fc40.x86_64
libattr-2.5.1-9.fc40.x86_64
libblkid-2.39.2-1.fc40.x86_64
libbrotli-1.1.0-1.fc40.x86_64
libcap-2.48-7.fc39.x86_64
libcap-ng-0.8.3-8.fc40.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.3.0-1.fc40.x86_64
libdb-5.3.28-58.fc40.x86_64
libeconf-0.5.2-1.fc40.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.2-1.fc40.x86_64
libffi-3.4.4-4.fc39.x86_64
libgcc-13.2.1-1.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.2-1.fc40.x86_64
libnghttp2-1.56.0-1.fc40.x86_64
libnsl2-2.0.0-6.fc39.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
libpwquality-1.4.5-6.fc39.x86_64
libselinux-3.5-5.fc39.x86_64
libsemanage-3.5-4.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
libsmartcols-2.39.2-1.fc40.x86_64
libssh-0.10.5-2.fc39.x86_64
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-1.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.3-1.rc2.fc39.x86_64
libunistring-1.1-5.fc40.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.2-1.fc40.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-2.fc39.x86_64
libxml2-2.11.5-1.fc40.x86_64
libzstd-1.5.5-4.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-1:3.1.1-4.fc40.x86_64
p11-kit-0.25.0-2.fc39.x86_64
p11-kit-trust-0.25.0-2.fc39.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.x86_64
pam-libs-1.5.3-2.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-1.fc39.2.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.x86_64
redhat-rpm-config-270-1.fc40.noarch
rpm-4.18.99-1.fc40.x86_64
rpm-build-4.18.99-1.fc40.x86_64
rpm-build-libs-4.18.99-1.fc40.x86_64
rpm-libs-4.18.99-1.fc40.x86_64
rpm-sequoia-1.5.0-1.fc40.x86_64
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.4-1.fc39.noarch
shadow-utils-2:4.14.0-1.fc40.x86_64
sqlite-libs-3.43.1-1.fc40.x86_64
systemd-libs-254.1-2.fc40.x86_64
tar-2:1.35-2.fc40.x86_64
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.x86_64
util-linux-2.39.2-1.fc40.x86_64
util-linux-core-2.39.2-1.fc40.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
zip-3.0-38.fc39.x86_64
zlib-ng-compat-2.1.3-3.fc40.x86_64
zstd-1.5.5-4.fc39.x86_64
Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.x86_64
authselect-1.4.2-3.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.x86_64
binutils-2.41-5.fc40.x86_64
binutils-gold-2.41-5.fc40.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.x86_64
coreutils-common-9.4-1.fc40.x86_64
cpio-2.14-4.fc39.x86_64
cracklib-2.9.11-2.fc40.x86_64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.x86_64
cyrus-sasl-lib-2.1.28-11.fc39.x86_64
debugedit-5.0-10.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.19-4.fc39.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.x86_64
elfutils-debuginfod-client-0.189-6.fc40.x86_64
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.x86_64
elfutils-libs-0.189-6.fc40.x86_64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.x86_64
file-libs-5.45-1.fc40.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-4.9.0-6.fc40.x86_64
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.x86_64
gdb-minimal-13.2-8.fc40.x86_64
gdbm-libs-1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.x86_64
glibc-common-2.38.9000-8.fc40.x86_64
glibc-gconv-extra-2.38.9000-8.fc40.x86_64
glibc-minimal-langpack-2.38.9000-8.fc40.x86_64
gmp-6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.0.3-3.fc39.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.x86_64
krb5-libs-1.21.2-1.fc40.x86_64
libacl-2.3.1-9.fc40.x86_64
libarchive-3.7.2-1.fc40.x86_64
libattr-2.5.1-9.fc40.x86_64
libblkid-2.39.2-1.fc40.x86_64
libbrotli-1.1.0-1.fc40.x86_64
libcap-2.48-7.fc39.x86_64
libcap-ng-0.8.3-8.fc40.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.3.0-1.fc40.x86_64
libdb-5.3.28-58.fc40.x86_64
libeconf-0.5.2-1.fc40.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.2-1.fc40.x86_64
libffi-3.4.4-4.fc39.x86_64
libgcc-13.2.1-1.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.2-1.fc40.x86_64
libnghttp2-1.56.0-1.fc40.x86_64
libnsl2-2.0.0-6.fc39.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
libpwquality-1.4.5-6.fc39.x86_64
libselinux-3.5-5.fc39.x86_64
libsemanage-3.5-4.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
libsmartcols-2.39.2-1.fc40.x86_64
libssh-0.10.5-2.fc39.x86_64
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-1.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.3-1.rc2.fc39.x86_64
libunistring-1.1-5.fc40.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.2-1.fc40.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-2.fc39.x86_64
libxml2-2.11.5-1.fc40.x86_64
libzstd-1.5.5-4.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-3.1.1-4.fc40.x86_64
p11-kit-0.25.0-2.fc39.x86_64
p11-kit-trust-0.25.0-2.fc39.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.x86_64
pam-libs-1.5.3-2.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-1.fc39.2.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.x86_64
redhat-rpm-config-270-1.fc40.noarch
rpm-4.18.99-1.fc40.x86_64
rpm-build-4.18.99-1.fc40.x86_64
rpm-build-libs-4.18.99-1.fc40.x86_64
rpm-libs-4.18.99-1.fc40.x86_64
rpm-sequoia-1.5.0-1.fc40.x86_64
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.4-1.fc39.noarch
shadow-utils-4.14.0-1.fc40.x86_64
sqlite-libs-3.43.1-1.fc40.x86_64
systemd-libs-254.1-2.fc40.x86_64
tar-1.35-2.fc40.x86_64
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.x86_64
util-linux-2.39.2-1.fc40.x86_64
util-linux-core-2.39.2-1.fc40.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
zip-3.0-38.fc39.x86_64
zlib-ng-compat-2.1.3-3.fc40.x86_64
zstd-1.5.5-4.fc39.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689984000
Wrote: /builddir/build/SRPMS/staden-io_lib-1.14.8-2.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1694933262.896232/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1694933262.896232/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1694933262.896232/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-j_6g1gu6/staden-io_lib/staden-io_lib.spec) Config(child) 1 minutes 12 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/staden-io_lib-1.14.8-2.fc40.src.rpm) Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1694933262.896232/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1694933262.896232/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1694933262.896232/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.18.99-1.fc40.x86_64
rpm-sequoia-1.5.0-1.fc40.x86_64
python3-dnf-4.16.2-4.fc40.noarch
python3-dnf-plugins-core-4.4.2-1.fc39.noarch
yum-4.16.2-4.fc40.noarch
Start: build phase for staden-io_lib-1.14.8-2.fc40.src.rpm
Start: build setup for staden-io_lib-1.14.8-2.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689984000
Wrote: /builddir/build/SRPMS/staden-io_lib-1.14.8-2.fc40.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 33 kB/s | 1.5 kB 00:00
fedora 175 kB/s | 9.2 kB 00:00
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
gcc x86_64 13.2.1-1.fc39 fedora 34 M
libcurl-devel x86_64 8.3.0-1.fc40 fedora 1.0 M
make x86_64 1:4.4.1-2.fc39 fedora 589 k
zlib-ng-compat-devel x86_64 2.1.3-3.fc40 copr_base 34 k
Installing dependencies:
annobin-docs noarch 12.26-1.fc40 fedora 94 k
annobin-plugin-gcc x86_64 12.26-1.fc40 fedora 958 k
cpp x86_64 13.2.1-1.fc39 fedora 11 M
gc x86_64 8.2.2-4.fc39 fedora 110 k
gcc-plugin-annobin x86_64 13.2.1-1.fc39 fedora 47 k
glibc-devel x86_64 2.38.9000-8.fc40 fedora 88 k
glibc-headers-x86 noarch 2.38.9000-8.fc40 fedora 572 k
guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M
kernel-headers x86_64 6.6.0-0.rc1.git0.1.fc40 fedora 1.6 M
libmpc x86_64 1.3.1-3.fc39 fedora 70 k
libtool-ltdl x86_64 2.4.7-8.fc40 fedora 36 k
libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k
Transaction Summary
================================================================================
Install 16 Packages
Total size: 57 M
Total download size: 1.0 M
Installed size: 183 M
Downloading Packages:
[SKIPPED] zlib-ng-compat-devel-2.1.3-3.fc40.x86_64.rpm: Already downloaded
[SKIPPED] annobin-docs-12.26-1.fc40.noarch.rpm: Already downloaded
[SKIPPED] annobin-plugin-gcc-12.26-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] cpp-13.2.1-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] gc-8.2.2-4.fc39.x86_64.rpm: Already downloaded
[SKIPPED] gcc-13.2.1-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] gcc-plugin-annobin-13.2.1-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] glibc-devel-2.38.9000-8.fc40.x86_64.rpm: Already downloaded
[SKIPPED] glibc-headers-x86-2.38.9000-8.fc40.noarch.rpm: Already downloaded
[SKIPPED] guile22-2.2.7-9.fc39.x86_64.rpm: Already downloaded
[SKIPPED] kernel-headers-6.6.0-0.rc1.git0.1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] libmpc-1.3.1-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libtool-ltdl-2.4.7-8.fc40.x86_64.rpm: Already downloaded
[SKIPPED] libxcrypt-devel-4.4.36-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] make-4.4.1-2.fc39.x86_64.rpm: Already downloaded
(16/16): libcurl-devel-8.3.0-1.fc40.x86_64.rpm 6.7 MB/s | 1.0 MB 00:00
--------------------------------------------------------------------------------
Total 4.2 MB/s | 1.0 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : libmpc-1.3.1-3.fc39.x86_64 1/16
Installing : cpp-13.2.1-1.fc39.x86_64 2/16
Installing : libtool-ltdl-2.4.7-8.fc40.x86_64 3/16
Installing : kernel-headers-6.6.0-0.rc1.git0.1.fc40.x86_64 4/16
Installing : glibc-headers-x86-2.38.9000-8.fc40.noarch 5/16
Installing : libxcrypt-devel-4.4.36-2.fc39.x86_64 6/16
Installing : glibc-devel-2.38.9000-8.fc40.x86_64 7/16
Installing : gc-8.2.2-4.fc39.x86_64 8/16
Installing : guile22-2.2.7-9.fc39.x86_64 9/16
Installing : make-1:4.4.1-2.fc39.x86_64 10/16
Installing : gcc-13.2.1-1.fc39.x86_64 11/16
Running scriptlet: gcc-13.2.1-1.fc39.x86_64 11/16
Installing : annobin-docs-12.26-1.fc40.noarch 12/16
Installing : annobin-plugin-gcc-12.26-1.fc40.x86_64 13/16
Running scriptlet: annobin-plugin-gcc-12.26-1.fc40.x86_64 13/16
Installing : gcc-plugin-annobin-13.2.1-1.fc39.x86_64 14/16
Running scriptlet: gcc-plugin-annobin-13.2.1-1.fc39.x86_64 14/16
Installing : libcurl-devel-8.3.0-1.fc40.x86_64 15/16
Installing : zlib-ng-compat-devel-2.1.3-3.fc40.x86_64 16/16
Running scriptlet: zlib-ng-compat-devel-2.1.3-3.fc40.x86_64 16/16
Verifying : zlib-ng-compat-devel-2.1.3-3.fc40.x86_64 1/16
Verifying : annobin-docs-12.26-1.fc40.noarch 2/16
Verifying : annobin-plugin-gcc-12.26-1.fc40.x86_64 3/16
Verifying : cpp-13.2.1-1.fc39.x86_64 4/16
Verifying : gc-8.2.2-4.fc39.x86_64 5/16
Verifying : gcc-13.2.1-1.fc39.x86_64 6/16
Verifying : gcc-plugin-annobin-13.2.1-1.fc39.x86_64 7/16
Verifying : glibc-devel-2.38.9000-8.fc40.x86_64 8/16
Verifying : glibc-headers-x86-2.38.9000-8.fc40.noarch 9/16
Verifying : guile22-2.2.7-9.fc39.x86_64 10/16
Verifying : kernel-headers-6.6.0-0.rc1.git0.1.fc40.x86_64 11/16
Verifying : libcurl-devel-8.3.0-1.fc40.x86_64 12/16
Verifying : libmpc-1.3.1-3.fc39.x86_64 13/16
Verifying : libtool-ltdl-2.4.7-8.fc40.x86_64 14/16
Verifying : libxcrypt-devel-4.4.36-2.fc39.x86_64 15/16
Verifying : make-1:4.4.1-2.fc39.x86_64 16/16
Installed:
annobin-docs-12.26-1.fc40.noarch
annobin-plugin-gcc-12.26-1.fc40.x86_64
cpp-13.2.1-1.fc39.x86_64
gc-8.2.2-4.fc39.x86_64
gcc-13.2.1-1.fc39.x86_64
gcc-plugin-annobin-13.2.1-1.fc39.x86_64
glibc-devel-2.38.9000-8.fc40.x86_64
glibc-headers-x86-2.38.9000-8.fc40.noarch
guile22-2.2.7-9.fc39.x86_64
kernel-headers-6.6.0-0.rc1.git0.1.fc40.x86_64
libcurl-devel-8.3.0-1.fc40.x86_64
libmpc-1.3.1-3.fc39.x86_64
libtool-ltdl-2.4.7-8.fc40.x86_64
libxcrypt-devel-4.4.36-2.fc39.x86_64
make-1:4.4.1-2.fc39.x86_64
zlib-ng-compat-devel-2.1.3-3.fc40.x86_64
Complete!
Finish: build setup for staden-io_lib-1.14.8-2.fc40.src.rpm
Start: rpmbuild staden-io_lib-1.14.8-2.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689984000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.D8Pn1d
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf io_lib-1.14.8
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/io_lib-1.14.8.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd io_lib-1.14.8
+ rm -rf /builddir/build/BUILD/io_lib-1.14.8-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/io_lib-1.14.8-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/staden-libs-config.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ mv io_lib-config.in staden-io_lib-config.in
+ sed -i s/libread/libstaden-read/g io_lib/Makefile.in progs/Makefile.in
+ sed -i s/lread/lstaden-read/ staden-io_lib-config.in
+ sed -i s/io_lib-config/staden-io_lib-config/g configure Makefile.in
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.hkJCfo
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd io_lib-1.14.8
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup 2023-09-17 06:49:03.206118790 +0000
+++ ./configure 2023-09-17 06:49:03.235118914 +0000
@@ -1759,7 +1759,7 @@
#ifdef __cplusplus
extern "C"
#endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup 2023-09-17 06:49:03.235118914 +0000
+++ ./configure 2023-09-17 06:49:03.252118986 +0000
@@ -15110,7 +15110,7 @@
compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
nm_file_list_spec='`$ECHO "$nm_file_list_spec" | $SED "$delay_single_quote_subst"`'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=x86_64-redhat-linux --host=x86_64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for x86_64-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64-redhat-linux-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-redhat-linux-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-redhat-linux-ar... no
checking for ar... ar
checking for archiver @FILE support... @
checking for x86_64-redhat-linux-strip... no
checking for strip... strip
checking for x86_64-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for x86_64-redhat-linux-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for gawk... (cached) gawk
checking for curl-config... /usr/bin/curl-config
checking for the version of libcurl... 8.3.0
checking whether libcurl just needs -lcurl... yes
checking whether libcurl is usable... yes
checking for curl_free... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for library containing gethostbyname... none required
checking for library containing socket... none required
checking for BZ2_bzBuffToBuffCompress in -lbz2... no
checking for lzma_easy_buffer_encode in -llzma... no
checking whether byte ordering is bigendian... no
checking for ANSI C header files... (cached) yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for unistd.h... (cached) yes
checking for zlib.h... (cached) yes
checking stdio_ext.h usability... yes
checking stdio_ext.h presence... yes
checking for stdio_ext.h... yes
checking whether byte ordering is bigendian... (cached) no
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking for inline... inline
checking for mode_t... yes
checking for fileno... yes
checking for fstat... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for library containing pthread_join... none required
checking for library containing cos... -lm
checking for strdup... yes
checking for fsync... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating io_lib/Makefile
config.status: creating progs/Makefile
config.status: creating tests/Makefile
config.status: creating staden-io_lib-config
config.status: creating io_lib/os.h
config.status: creating io_lib_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
+ sed -i 's+\(search_path_spec=\"\)+\1/lib64 /usr/lib64 +' libtool
+ /usr/bin/make -O -j2 V=1 VERBOSE=1
/usr/bin/make all-recursive
Making all in io_lib
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-scf_extras.lo `test -f 'scf_extras.c' || echo './'`scf_extras.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c scf_extras.c -fPIC -DPIC -o .libs/libstaden_read_la-scf_extras.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-Read.lo `test -f 'Read.c' || echo './'`Read.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Read.c -fPIC -DPIC -o .libs/libstaden_read_la-Read.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-translate.lo `test -f 'translate.c' || echo './'`translate.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c translate.c -fPIC -DPIC -o .libs/libstaden_read_la-translate.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-ztr.lo `test -f 'ztr.c' || echo './'`ztr.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ztr.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-compression.lo `test -f 'compression.c' || echo './'`compression.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c compression.c -fPIC -DPIC -o .libs/libstaden_read_la-compression.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ztr_translate.c -fPIC -DPIC -o .libs/libstaden_read_la-ztr_translate.o
ztr_translate.c: In function 'ztr_encode_samples_4':
ztr_translate.c:99:20: warning: '%s' directive writing up to 255 bytes into a region of size 12 [-Wformat-overflow=]
99 | *mdbytes = sprintf(*mdata, "OFFS%c%s", 0, buf) + 1;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:964,
from ztr_translate.c:73:
In function 'sprintf',
inlined from 'ztr_encode_samples_4' at ztr_translate.c:99:13:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 6 and 261 bytes into a destination of size 17
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c seqIOPlain.c -fPIC -DPIC -o .libs/libstaden_read_la-seqIOPlain.o
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c expFileIO.c -fPIC -DPIC -o .libs/libstaden_read_la-expFileIO.o
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read_scf.c -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sff.c -fPIC -DPIC -o .libs/libstaden_read_la-sff.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-files.lo `test -f 'files.c' || echo './'`files.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c files.c -fPIC -DPIC -o .libs/libstaden_read_la-files.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-find.lo `test -f 'find.c' || echo './'`find.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c find.c -fPIC -DPIC -o .libs/libstaden_read_la-find.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-mach-io.lo `test -f 'mach-io.c' || echo './'`mach-io.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mach-io.c -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-srf.lo `test -f 'srf.c' || echo './'`srf.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c srf.c -fPIC -DPIC -o .libs/libstaden_read_la-srf.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
srf.c: In function 'srf_write_cont_hdr':
srf.c:334:24: warning: the comparison will always evaluate as 'true' for the address of 'version' will never be NULL [-Waddress]
334 | + (ch->version ? strlen(ch->version) : 0) + 1
| ^
In file included from srf.c:47:
../io_lib/srf.h:58:10: note: 'version' declared here
58 | char version[256];
| ^~~~~~~
srf.c:335:28: warning: the comparison will always evaluate as 'true' for the address of 'base_caller' will never be NULL [-Waddress]
335 | + (ch->base_caller ? strlen(ch->base_caller) : 0) + 1
| ^
../io_lib/srf.h:60:10: note: 'base_caller' declared here
60 | char base_caller[256];
| ^~~~~~~~~~~
srf.c:336:36: warning: the comparison will always evaluate as 'true' for the address of 'base_caller_version' will never be NULL [-Waddress]
336 | + (ch->base_caller_version ? strlen(ch->base_caller_version) : 0) + 1;
| ^
../io_lib/srf.h:61:10: note: 'base_caller_version' declared here
61 | char base_caller_version[256];
| ^~~~~~~~~~~~~~~~~~~
srf.c: In function 'srf_write_trace_hdr':
srf.c:500:26: warning: the comparison will always evaluate as 'true' for the address of 'id_prefix' will never be NULL [-Waddress]
500 | + (th->id_prefix ? strlen(th->id_prefix) : 0) + 1
| ^
../io_lib/srf.h:68:10: note: 'id_prefix' declared here
68 | char id_prefix[256];
| ^~~~~~~~~
srf.c: In function 'srf_index_write':
srf.c:1010:27: warning: the comparison will always evaluate as 'true' for the address of 'ch_file' will never be NULL [-Waddress]
1010 | 1 + (idx->ch_file ? strlen(idx->ch_file) : 0) +
| ^
../io_lib/srf.h:118:10: note: 'ch_file' declared here
118 | char ch_file[PATH_MAX+1];
| ^~~~~~~
srf.c:1011:27: warning: the comparison will always evaluate as 'true' for the address of 'th_file' will never be NULL [-Waddress]
1011 | 1 + (idx->th_file ? strlen(idx->th_file) : 0);
| ^
../io_lib/srf.h:119:10: note: 'th_file' declared here
119 | char th_file[PATH_MAX+1];
| ^~~~~~~
srf.c:1036:9: warning: the comparison will always evaluate as 'true' for the address of 'th_file' will never be NULL [-Waddress]
1036 | if (idx->th_file)
| ^~~
../io_lib/srf.h:119:10: note: 'th_file' declared here
119 | char th_file[PATH_MAX+1];
| ^~~~~~~
srf.c:1040:9: warning: the comparison will always evaluate as 'true' for the address of 'ch_file' will never be NULL [-Waddress]
1040 | if (idx->ch_file)
| ^~~
../io_lib/srf.h:118:10: note: 'ch_file' declared here
118 | char ch_file[PATH_MAX+1];
| ^~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-read_alloc.lo `test -f 'read_alloc.c' || echo './'`read_alloc.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c read_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-read_alloc.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-strings.lo `test -f 'strings.c' || echo './'`strings.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c strings.c -fPIC -DPIC -o .libs/libstaden_read_la-strings.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
strings.c: In function 'c2fstr':
strings.c:117:5: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation]
117 | strncpy(f,c,i);
| ^
In file included from strings.c:87:
strings.c:116:18: note: length computed here
116 | i = MIN((int)strlen(c),max_f);
| ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-traceType.lo `test -f 'traceType.c' || echo './'`traceType.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c traceType.c -fPIC -DPIC -o .libs/libstaden_read_la-traceType.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-xalloc.lo `test -f 'xalloc.c' || echo './'`xalloc.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c xalloc.c -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo './'`open_trace_file.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c open_trace_file.c -fPIC -DPIC -o .libs/libstaden_read_la-open_trace_file.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-vlen.lo `test -f 'vlen.c' || echo './'`vlen.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c vlen.c -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo './'`jenkins_lookup3.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c jenkins_lookup3.c -fPIC -DPIC -o .libs/libstaden_read_la-jenkins_lookup3.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-mFILE.lo `test -f 'mFILE.c' || echo './'`mFILE.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c mFILE.c -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo './'`pooled_alloc.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c pooled_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-pooled_alloc.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c hash_table.c -fPIC -DPIC -o .libs/libstaden_read_la-hash_table.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-sam_header.lo `test -f 'sam_header.c' || echo './'`sam_header.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c sam_header.c -fPIC -DPIC -o .libs/libstaden_read_la-sam_header.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
In file included from sam_header.c:43:
sam_header.c: In function 'sam_hdr_vadd':
sam_header.c:451:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
451 | assert(p->next = t);
| ^
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-rANS_static.lo `test -f 'rANS_static.c' || echo './'`rANS_static.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c rANS_static.c -fPIC -DPIC -o .libs/libstaden_read_la-rANS_static.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-bam.lo `test -f 'bam.c' || echo './'`bam.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bam.c -fPIC -DPIC -o .libs/libstaden_read_la-bam.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-cram_codecs.lo `test -f 'cram_codecs.c' || echo './'`cram_codecs.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cram_codecs.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_codecs.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-cram_encode.lo `test -f 'cram_encode.c' || echo './'`cram_encode.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cram_encode.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_encode.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-cram_stats.lo `test -f 'cram_stats.c' || echo './'`cram_stats.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cram_stats.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_stats.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-cram_decode.lo `test -f 'cram_decode.c' || echo './'`cram_decode.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cram_decode.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_decode.o
cram_decode.c: In function 'cram_to_bam':
cram_decode.c:2980:44: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
2980 | *aux++ = 'R'; *aux++ = 'G'; *aux++ = 'Z';
| ~~~~~~~^~~~~
In file included from ../io_lib/cram_structs.h:67,
from ../io_lib/cram.h:57,
from cram_decode.c:56:
../io_lib/bam.h:96:19: note: at offset [2, 3] into destination object 'data' of size 1
96 | unsigned char data; /* unknown size */
| ^~~~
../io_lib/bam.h:96:19: note: at offset [2, 3] into destination object 'data' of size 1
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-cram_index.lo `test -f 'cram_index.c' || echo './'`cram_index.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cram_index.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_index.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-zfio.lo `test -f 'zfio.c' || echo './'`zfio.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c zfio.c -fPIC -DPIC -o .libs/libstaden_read_la-zfio.o
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-cram_io.lo `test -f 'cram_io.c' || echo './'`cram_io.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cram_io.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_io.o
cram_io.c: In function 'cram_populate_ref':
cram_io.c:2863:34: warning: '.tmp_' directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
2863 | sprintf(path_tmp, "%s.tmp_%d", path, /*getpid(),*/ i);
| ^~~~~
cram_io.c:2863:31: note: directive argument in the range [0, 2147483647]
2863 | sprintf(path_tmp, "%s.tmp_%d", path, /*getpid(),*/ i);
| ^~~~~~~~~~~
In file included from /usr/include/stdio.h:964,
from cram_io.c:56:
In function 'sprintf',
inlined from 'cram_populate_ref' at cram_io.c:2863:6:
/usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 7 and 4111 bytes into a destination of size 4096
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
cram_io.c: In function 'cram_write_SAM_hdr':
cram_io.c:4256:13: warning: 'strncpy' specified bound 4096 equals destination size [-Wstringop-truncation]
4256 | strncpy(out, in, PATH_MAX);
| ^
cram_io.c:4248:9: warning: 'strncpy' specified bound 4096 equals destination size [-Wstringop-truncation]
4248 | strncpy(out, in, PATH_MAX);
| ^
cram_io.c: In function 'cram_open':
cram_io.c:4813:9: warning: 'strncpy' specified bound 20 equals destination size [-Wstringop-truncation]
4813 | strncpy(def.file_id, filename, 20);
| ^
cram_io.c: In function 'cram_openw_by_callbacks':
cram_io.c:5039:13: warning: 'strncpy' specified bound 20 equals destination size [-Wstringop-truncation]
5039 | strncpy(def.file_id, filename, 20);
| ^
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-dstring.lo `test -f 'dstring.c' || echo './'`dstring.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c dstring.c -fPIC -DPIC -o .libs/libstaden_read_la-dstring.o
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c string_alloc.c -fPIC -DPIC -o .libs/libstaden_read_la-string_alloc.o
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c crc32.c -fPIC -DPIC -o .libs/libstaden_read_la-crc32.o
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c md5.c -fPIC -DPIC -o .libs/libstaden_read_la-md5.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-scram.lo `test -f 'scram.c' || echo './'`scram.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c scram.c -fPIC -DPIC -o .libs/libstaden_read_la-scram.o
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c binning.c -fPIC -DPIC -o .libs/libstaden_read_la-binning.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-thread_pool.lo `test -f 'thread_pool.c' || echo './'`thread_pool.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c thread_pool.c -fPIC -DPIC -o .libs/libstaden_read_la-thread_pool.o
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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o libstaden_read_la-cram_bambam.lo `test -f 'cram_bambam.c' || echo './'`cram_bambam.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c cram_bambam.c -fPIC -DPIC -o .libs/libstaden_read_la-cram_bambam.o
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/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -version-info 11:6:0 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o libstaden-read.la -rpath /usr/lib64 libstaden_read_la-Read.lo libstaden_read_la-scf_extras.lo libstaden_read_la-translate.lo libstaden_read_la-compression.lo libstaden_read_la-ztr.lo libstaden_read_la-ztr_translate.lo libstaden_read_la-deflate_interlaced.lo libstaden_read_la-fpoint.lo libstaden_read_la-seqIOABI.lo libstaden_read_la-seqIOALF.lo libstaden_read_la-expFileIO.lo libstaden_read_la-seqIOPlain.lo libstaden_read_la-misc_scf.lo libstaden_read_la-read_scf.lo libstaden_read_la-write_scf.lo libstaden_read_la-sff.lo libstaden_read_la-srf.lo libstaden_read_la-array.lo libstaden_read_la-compress.lo libstaden_read_la-error.lo libstaden_read_la-files.lo libstaden_read_la-find.lo libstaden_read_la-mach-io.lo libstaden_read_la-open_trace_file.lo libstaden_read_la-read_alloc.lo libstaden_read_la-strings.lo libstaden_read_la-traceType.lo libstaden_read_la-xalloc.lo libstaden_read_la-vlen.lo libstaden_read_la-hash_table.lo libstaden_read_la-jenkins_lookup3.lo libstaden_read_la-mFILE.lo libstaden_read_la-pooled_alloc.lo libstaden_read_la-bam.lo libstaden_read_la-sam_header.lo libstaden_read_la-rANS_static.lo libstaden_read_la-cram_codecs.lo libstaden_read_la-cram_encode.lo libstaden_read_la-cram_decode.lo libstaden_read_la-cram_stats.lo libstaden_read_la-cram_io.lo libstaden_read_la-cram_index.lo libstaden_read_la-zfio.lo libstaden_read_la-dstring.lo libstaden_read_la-string_alloc.lo libstaden_read_la-md5.lo libstaden_read_la-crc32.lo libstaden_read_la-scram.lo libstaden_read_la-thread_pool.lo libstaden_read_la-binning.lo libstaden_read_la-cram_bambam.lo -lz -lcurl -lm
libtool: link: gcc -shared -fPIC -DPIC .libs/libstaden_read_la-Read.o .libs/libstaden_read_la-scf_extras.o .libs/libstaden_read_la-translate.o .libs/libstaden_read_la-compression.o .libs/libstaden_read_la-ztr.o .libs/libstaden_read_la-ztr_translate.o .libs/libstaden_read_la-deflate_interlaced.o .libs/libstaden_read_la-fpoint.o .libs/libstaden_read_la-seqIOABI.o .libs/libstaden_read_la-seqIOALF.o .libs/libstaden_read_la-expFileIO.o .libs/libstaden_read_la-seqIOPlain.o .libs/libstaden_read_la-misc_scf.o .libs/libstaden_read_la-read_scf.o .libs/libstaden_read_la-write_scf.o .libs/libstaden_read_la-sff.o .libs/libstaden_read_la-srf.o .libs/libstaden_read_la-array.o .libs/libstaden_read_la-compress.o .libs/libstaden_read_la-error.o .libs/libstaden_read_la-files.o .libs/libstaden_read_la-find.o .libs/libstaden_read_la-mach-io.o .libs/libstaden_read_la-open_trace_file.o .libs/libstaden_read_la-read_alloc.o .libs/libstaden_read_la-strings.o .libs/libstaden_read_la-traceType.o .libs/libstaden_read_la-xalloc.o .libs/libstaden_read_la-vlen.o .libs/libstaden_read_la-hash_table.o .libs/libstaden_read_la-jenkins_lookup3.o .libs/libstaden_read_la-mFILE.o .libs/libstaden_read_la-pooled_alloc.o .libs/libstaden_read_la-bam.o .libs/libstaden_read_la-sam_header.o .libs/libstaden_read_la-rANS_static.o .libs/libstaden_read_la-cram_codecs.o .libs/libstaden_read_la-cram_encode.o .libs/libstaden_read_la-cram_decode.o .libs/libstaden_read_la-cram_stats.o .libs/libstaden_read_la-cram_io.o .libs/libstaden_read_la-cram_index.o .libs/libstaden_read_la-zfio.o .libs/libstaden_read_la-dstring.o .libs/libstaden_read_la-string_alloc.o .libs/libstaden_read_la-md5.o .libs/libstaden_read_la-crc32.o .libs/libstaden_read_la-scram.o .libs/libstaden_read_la-thread_pool.o .libs/libstaden_read_la-binning.o .libs/libstaden_read_la-cram_bambam.o -lz -lcurl -lm -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -flto=auto -m64 -mtune=generic -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,--build-id=sha1 -Wl,-soname -Wl,libstaden-read.so.11 -o .libs/libstaden-read.so.11.0.6
libtool: link: (cd ".libs" && rm -f "libstaden-read.so.11" && ln -s "libstaden-read.so.11.0.6" "libstaden-read.so.11")
libtool: link: (cd ".libs" && rm -f "libstaden-read.so" && ln -s "libstaden-read.so.11.0.6" "libstaden-read.so")
libtool: link: ( cd ".libs" && rm -f "libstaden-read.la" && ln -s "../libstaden-read.la" "libstaden-read.la" )
../io_lib/rANS_static.h:6:16: warning: type of 'rans_uncompress' does not match original declaration [-Wlto-type-mismatch]
6 | unsigned char *rans_uncompress(unsigned char *in, unsigned int in_size,
| ^
rANS_static.c:1256:16: note: type mismatch in parameter 4
1256 | unsigned char *rans_uncompress(unsigned char *in, unsigned int in_size,
| ^
rANS_static.c:1256:16: note: type 'void' should match type 'int'
rANS_static.c:1256:16: note: 'rans_uncompress' was previously declared here
cram_decode.c: In function 'cram_to_bam':
cram_decode.c:2980:44: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
2980 | *aux++ = 'R'; *aux++ = 'G'; *aux++ = 'Z';
| ^
../io_lib/bam.h:96:19: note: at offset [2, 3] into destination object 'data' of size 1
96 | unsigned char data; /* unknown size */
| ^
../io_lib/bam.h:96:19: note: at offset [2, 3] into destination object 'data' of size 1
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Making all in progs
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o makeSCF.o makeSCF.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o convert_trace.o convert_trace.c
convert_trace.c: In function ‘main’:
convert_trace.c:811:37: warning: ‘%s’ directive writing up to 8191 bytes into a region of size 2042 [-Wformat-overflow=]
792 | infname = line2;
| ~~~~~
......
811 | sprintf(buf, "ERROR %s", infname);
| ^~
In file included from /usr/include/stdio.h:964,
from convert_trace.c:73:
In function ‘sprintf’,
inlined from ‘main’ at convert_trace.c:811:3:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 7 and 8198 bytes into a destination of size 2048
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o scf_info.o scf_info.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o scf_dump.o scf_dump.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o scf_update.o scf_update.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o hash_extract.o hash_extract.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o hash_tar.o hash_tar.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o hash_list.o hash_list.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o trace_dump.o trace_dump.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o hash_sff.o hash_sff.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o append_sff.o append_sff.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o ztr_dump.o ztr_dump.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o srf_index_hash.o srf_index_hash.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o srf_extract_linear.o srf_extract_linear.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o srf_extract_hash.o srf_extract_hash.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o srf_dump_all.o srf_dump_all.c
srf_dump_all.c: In function ‘read_filter_from_file’:
srf_dump_all.c:580:49: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
580 | fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, cThisLine);
| ^~
srf_dump_all.c:569:51: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
569 | fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, cThisLine);
| ^~
srf_dump_all.c: In function ‘get_read_filter’:
srf_dump_all.c:665:41: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
665 | fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, filter_value);
| ^~
srf_dump_all.c:654:43: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
654 | fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, filter_value);
| ^~
srf_dump_all.c:636:46: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
636 | fprintf(stderr, "Bad file name \"%s\" in read filter \"%s\".\n", file_name, filter_value);
| ^~
srf_dump_all.c: In function ‘process_srf_to_text_files’:
srf_dump_all.c:954:20: warning: ‘/s_’ directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
954 | sprintf(fn, "%s/s_%d_%04d_dump.txt", dir, lane, tile);
| ^~~
In file included from /usr/include/stdio.h:964,
from srf_dump_all.c:46:
In function ‘sprintf’,
inlined from ‘fopen_text’ at srf_dump_all.c:954:5,
inlined from ‘process_srf_to_text_files’ at srf_dump_all.c:1002:14:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 19 and 1059 bytes into a destination of size 1024
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o srf2fasta.o srf2fasta.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o srf2fastq.o srf2fastq.c
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o srf_filter.o srf_filter.c
srf_filter.c: In function ‘read_filter_from_file’:
srf_filter.c:254:49: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
254 | fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, cThisLine);
| ^~
srf_filter.c:243:51: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
243 | fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, cThisLine);
| ^~
srf_filter.c: In function ‘get_read_filter’:
srf_filter.c:356:41: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
356 | fprintf(stderr, "Bad read \"%s\" in read filter \"%s\".\n", read, filter_value);
| ^~
srf_filter.c:345:43: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
345 | fprintf(stderr, "Bad prefix \"%s\" in read filter \"%s\".\n", prefix, filter_value);
| ^~
srf_filter.c:327:46: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
327 | fprintf(stderr, "Bad file name \"%s\" in read filter \"%s\".\n", file_name, filter_value);
| ^~
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gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o srf_info.o srf_info.c
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libtool: link: gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scram_flagstat scram_flagstat.o ../io_lib/.libs/libstaden-read.so -lm
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o scram_pileup scram_pileup.o ../io_lib/libstaden-read.la -lm
libtool: link: gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scram_pileup scram_pileup.o ../io_lib/.libs/libstaden-read.so -lm
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o scram_test scram_test.o ../io_lib/libstaden-read.la -lm
libtool: link: gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/scram_test scram_test.o ../io_lib/.libs/libstaden-read.so -lm
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o cram_size cram_size.o ../io_lib/libstaden-read.la -lm
libtool: link: gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/cram_size cram_size.o ../io_lib/.libs/libstaden-read.so -lm
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
Making all in tests
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/tests'
gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c -o cram_io_test.o cram_io_test.c
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/tests'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/tests'
/bin/sh ../libtool --tag=CC --mode=link gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o cram_io_test cram_io_test.o ../io_lib/libstaden-read.la -lm
libtool: link: gcc -Wall -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/cram_io_test cram_io_test.o ../io_lib/.libs/libstaden-read.so -lm
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/tests'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.3bZVZG
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd io_lib-1.14.8
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64 'INSTALL=/usr/bin/install -p'
Making install in io_lib
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/lib64'
/bin/sh ../libtool --mode=install /usr/bin/install -p libstaden-read.la '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/lib64'
libtool: install: /usr/bin/install -p .libs/libstaden-read.so.11.0.6 /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/lib64/libstaden-read.so.11.0.6
libtool: install: (cd /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/lib64 && { ln -s -f libstaden-read.so.11.0.6 libstaden-read.so.11 || { rm -f libstaden-read.so.11 && ln -s libstaden-read.so.11.0.6 libstaden-read.so.11; }; })
libtool: install: (cd /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/lib64 && { ln -s -f libstaden-read.so.11.0.6 libstaden-read.so || { rm -f libstaden-read.so && ln -s libstaden-read.so.11.0.6 libstaden-read.so; }; })
libtool: install: /usr/bin/install -p .libs/libstaden-read.lai /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/lib64/libstaden-read.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/io_lib'
Making install in progs
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin'
/bin/sh ../libtool --mode=install /usr/bin/install -p convert_trace makeSCF extract_seq extract_qual extract_fastq index_tar scf_dump scf_info scf_update get_comment hash_tar hash_extract hash_list trace_dump hash_sff append_sff ztr_dump srf_dump_all srf_index_hash srf_extract_linear srf_extract_hash srf2fastq srf2fasta srf_filter srf_info srf_list hash_exp cram_dump cram_index scramble scram_merge scram_pileup scram_flagstat scram_test cram_size '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin'
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/convert_trace /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/convert_trace
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/makeSCF /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/makeSCF
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/extract_seq /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/extract_seq
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/extract_qual /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/extract_qual
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/extract_fastq /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/extract_fastq
libtool: install: /usr/bin/install -p index_tar /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/index_tar
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/scf_dump /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/scf_dump
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/scf_info /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/scf_info
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/scf_update /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/scf_update
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/get_comment /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/get_comment
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/hash_tar /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/hash_tar
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/hash_extract /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/hash_extract
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/hash_list /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/hash_list
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/trace_dump /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/trace_dump
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/hash_sff /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/hash_sff
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/append_sff /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/append_sff
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/ztr_dump /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/ztr_dump
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf_dump_all /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf_dump_all
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf_index_hash /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf_index_hash
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf_extract_linear /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf_extract_linear
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf_extract_hash /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf_extract_hash
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf2fastq /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf2fastq
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf2fasta /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf2fasta
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf_filter /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf_filter
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf_info /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf_info
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/srf_list /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/srf_list
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/hash_exp /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/hash_exp
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/cram_dump /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/cram_dump
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/cram_index /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/cram_index
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/scramble /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/scramble
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/scram_merge /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/scram_merge
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/scram_pileup /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/scram_pileup
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/scram_flagstat /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/scram_flagstat
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/scram_test /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/scram_test
libtool: install: warning: `../io_lib/libstaden-read.la' has not been installed in `/usr/lib64'
libtool: install: /usr/bin/install -p .libs/cram_size /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin/cram_size
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/progs'
Making install in tests
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/tests'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8/tests'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/tests'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8/tests'
make[1]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8'
make[2]: Entering directory '/builddir/build/BUILD/io_lib-1.14.8'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin'
/usr/bin/install -p staden-io_lib-config '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/bin'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/man/man1'
/usr/bin/install -p -m 644 man/man1/srf_index_hash.1 man/man1/srf_info.1 man/man1/srf_list.1 man/man1/srf2fasta.1 man/man1/srf2fastq.1 man/man1/scramble.1 '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/man/man1'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/man/man3'
/usr/bin/install -p -m 644 man/man3/read_scf_header.3 man/man3/read_allocate.3 man/man3/ExperimentFile.3 man/man3/write_reading.3 man/man3/write_scf.3 man/man3/read_deallocate.3 man/man3/fwrite_reading.3 man/man3/read2scf.3 man/man3/scf2read.3 man/man3/fwrite_scf.3 man/man3/write_scf_header.3 man/man3/read_reading.3 man/man3/read_scf.3 man/man3/exp2read.3 man/man3/fread_reading.3 man/man3/read2exp.3 man/man3/fread_scf.3 '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/man/man3'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/man/man4'
/usr/bin/install -p -m 644 man/man4/Read.4 '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/man/man4'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/include/io_lib'
/usr/bin/install -p -m 644 io_lib/Read.h io_lib/scf_extras.h io_lib/translate.h io_lib/abi.h io_lib/fpoint.h io_lib/seqIOABI.h io_lib/alf.h io_lib/expFileIO.h io_lib/plain.h io_lib/scf.h io_lib/sff.h io_lib/array.h io_lib/compress.h io_lib/error.h io_lib/mach-io.h io_lib/misc.h io_lib/open_trace_file.h io_lib/tar_format.h io_lib/traceType.h io_lib/xalloc.h io_lib/mFILE.h io_lib/stdio_hack.h io_lib/vlen.h io_lib/hash_table.h io_lib/jenkins_lookup3.h io_lib/os.h io_lib/compression.h io_lib/ztr.h io_lib/deflate_interlaced.h io_lib/srf.h io_lib/pooled_alloc.h io_lib/cram.h io_lib/cram_structs.h io_lib/cram_io.h io_lib/cram_encode.h io_lib/cram_decode.h io_lib/cram_codecs.h io_lib/cram_index.h io_lib/cram_stats.h io_lib/zfio.h '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/include/io_lib'
/usr/bin/install -p -m 644 io_lib/scram.h io_lib/bam.h io_lib/sam_header.h io_lib/dstring.h io_lib/string_alloc.h io_lib_config.h io_lib/md5.h io_lib/thread_pool.h io_lib/binning.h '/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/include/io_lib'
make[2]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8'
make[1]: Leaving directory '/builddir/build/BUILD/io_lib-1.14.8'
+ find /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64 -name '*.la' -delete
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.14.8-2.fc40 --unique-debug-suffix -1.14.8-2.fc40.x86_64 --unique-debug-src-base staden-io_lib-1.14.8-2.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/io_lib-1.14.8
find-debuginfo: starting
Extracting debug info from 36 files
DWARF-compressing 36 files
sepdebugcrcfix: Updated 36 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/staden-io_lib-1.14.8-2.fc40.x86_64
3996 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/staden-io_lib-config from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: staden-io_lib-1.14.8-2.fc40.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ltDGyi
+ umask 022
+ cd /builddir/build/BUILD
+ cd io_lib-1.14.8
+ DOCDIR=/builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/doc/staden-io_lib
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/doc/staden-io_lib
+ cp -pr /builddir/build/BUILD/io_lib-1.14.8/README /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/doc/staden-io_lib
+ cp -pr /builddir/build/BUILD/io_lib-1.14.8/COPYRIGHT /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/doc/staden-io_lib
+ cp -pr /builddir/build/BUILD/io_lib-1.14.8/CHANGES /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/doc/staden-io_lib
+ cp -pr /builddir/build/BUILD/io_lib-1.14.8/docs /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64/usr/share/doc/staden-io_lib
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libstaden-read.so.11()(64bit) staden-io_lib = 1.14.8-2.fc40 staden-io_lib(x86-64) = 1.14.8-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcurl.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.29)(64bit) libstaden-read.so.11()(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0.2)(64bit) rtld(GNU_HASH)
Processing files: staden-io_lib-devel-1.14.8-2.fc40.x86_64
Provides: staden-io_lib-devel = 1.14.8-2.fc40 staden-io_lib-devel(x86-64) = 1.14.8-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh libstaden-read.so.11()(64bit)
Processing files: staden-io_lib-debugsource-1.14.8-2.fc40.x86_64
Provides: staden-io_lib-debugsource = 1.14.8-2.fc40 staden-io_lib-debugsource(x86-64) = 1.14.8-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: staden-io_lib-debuginfo-1.14.8-2.fc40.x86_64
Provides: debuginfo(build-id) = 004c2e6c51b01a4347c99ca04c26d563f62f1ac8 debuginfo(build-id) = 050a7990698d1ac832aded939ab2768e8e110e47 debuginfo(build-id) = 06f6d7a66809f620111c4819ecd9f8d4d66f66ea debuginfo(build-id) = 093946fdf9b6b9a7764ebb38da16637ee12fa3d0 debuginfo(build-id) = 0dfa35e2cc5fa90123f04a81a80b88c04cbf4b32 debuginfo(build-id) = 1489726a78d4a992db77be9ee116d982d51474b0 debuginfo(build-id) = 1d61f4a6649e8283e05d4acdfd7e9a6e8dadfcb0 debuginfo(build-id) = 439983e18466dff2cf20ebce6d3ca1e49ac9e627 debuginfo(build-id) = 4da3be27741f5097059307d69db3ebc9780ce6ec debuginfo(build-id) = 4f3458e15686cb9600a6b8bd823bbb76c8bca4a6 debuginfo(build-id) = 5251cda293c868e05dc83d68a46e4b926dc5a85b debuginfo(build-id) = 52755980bbc84bd7142177cff3381ecaf7693338 debuginfo(build-id) = 55f9cc20792c0691f56b9a7234baafd717cc862c debuginfo(build-id) = 5d31a5fb2f6f808eee11203323f6a5e3915d4fe1 debuginfo(build-id) = 5f02738d8094bc0b9c6bb7b00241db6d08797eed debuginfo(build-id) = 6b0779699af5712f1c5a3f01ef392ee0ffa5dc85 debuginfo(build-id) = 6d080d00c3c8dad748f3f56de11bb36fa8330bd9 debuginfo(build-id) = 792dee50c2060d497d76721c3032733125f15e20 debuginfo(build-id) = 85b2b79dbf71169e5efe926dc2460765f327ace9 debuginfo(build-id) = 903460a7321facd04f8dd0d664a7b14788d4308a debuginfo(build-id) = 9d03275bb999b367c828213a9d5dd58faec9e503 debuginfo(build-id) = a63c0bc916b0c6c2d94bf0beac4726600a7b7c29 debuginfo(build-id) = a69e63b49fdb84bb21cb90293803e65e0276aea0 debuginfo(build-id) = afaa64a341d09c0be812a482601b2a1d5a76f472 debuginfo(build-id) = b3701a4bf7a4f935a0fc164715a7f9770cc8a261 debuginfo(build-id) = b5951df9239f95d5f481ae979781df5aaf2554e7 debuginfo(build-id) = b6e2784c94db2860c497969d85274060034758d0 debuginfo(build-id) = b9f921434d96c4e71fd82e5f60f51ec1d565aab2 debuginfo(build-id) = ba059ce4d36f1ef747680042a70e44bc75ead8fc debuginfo(build-id) = c4e392c0cb18e3443f821cb14427d8fb764cd569 debuginfo(build-id) = c876363ff2163d3e95b350acdb227b5e5cc40ee9 debuginfo(build-id) = d1944393a255f1db51719b731c5f880229fb26bf debuginfo(build-id) = d4d7033c4ffd87c077f308ab6b0073dd030fab44 debuginfo(build-id) = d8afcc4846d1c57403ddc0c9246773237ee3b47e debuginfo(build-id) = ea14be27f18f2b1a8993d30527d004f0ee236c92 debuginfo(build-id) = f7ebf423c6ffe6054dcd1e84c092ea9c0c45d6c7 libstaden-read.so.11.0.6-1.14.8-2.fc40.x86_64.debug()(64bit) staden-io_lib-debuginfo = 1.14.8-2.fc40 staden-io_lib-debuginfo(x86-64) = 1.14.8-2.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: staden-io_lib-debugsource(x86-64) = 1.14.8-2.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64
Wrote: /builddir/build/RPMS/staden-io_lib-debugsource-1.14.8-2.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-debuginfo-1.14.8-2.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-devel-1.14.8-2.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/staden-io_lib-1.14.8-2.fc40.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.NsqBUF
+ umask 022
+ cd /builddir/build/BUILD
+ cd io_lib-1.14.8
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/staden-io_lib-1.14.8-2.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.kZ3ily
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/io_lib-1.14.8-SPECPARTS
+ rm -rf io_lib-1.14.8 io_lib-1.14.8.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild staden-io_lib-1.14.8-2.fc40.src.rpm
Finish: build phase for staden-io_lib-1.14.8-2.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1694933262.896232/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1694933262.896232/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1694933262.896232/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/staden-io_lib-1.14.8-2.fc40.src.rpm) Config(child) 0 minutes 34 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
"packages": [
{
"name": "staden-io_lib-debuginfo",
"epoch": null,
"version": "1.14.8",
"release": "2.fc40",
"arch": "x86_64"
},
{
"name": "staden-io_lib",
"epoch": null,
"version": "1.14.8",
"release": "2.fc40",
"arch": "x86_64"
},
{
"name": "staden-io_lib-devel",
"epoch": null,
"version": "1.14.8",
"release": "2.fc40",
"arch": "x86_64"
},
{
"name": "staden-io_lib-debugsource",
"epoch": null,
"version": "1.14.8",
"release": "2.fc40",
"arch": "x86_64"
},
{
"name": "staden-io_lib",
"epoch": null,
"version": "1.14.8",
"release": "2.fc40",
"arch": "src"
}
]
}
RPMResults finished