Warning: Permanently added '54.226.1.89' (ED25519) to the list of known hosts. Dload Upload Total Spent Left Speed 100 2399k 100 2399k 0 0 27.2M 0 --:--:-- --:--:-- --:--:-- 27.5M INFO: Reading stdout from command: md5sum bfast-0.7.0a.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-0zpaky0m/bfast/bfast.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-0zpaky0m/bfast --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1694930518.097321 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1 starting (python version = 3.11.3, NVR = mock-5.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-0zpaky0m/bfast/bfast.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.1 INFO: Mock Version: 5.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1694930518.097321/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1694930518.097321/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/8214780405b6c24a57d010898581a804cc56e8ee70a0a907f2411795c8bd9ea8/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/8214780405b6c24a57d010898581a804cc56e8ee70a0a907f2411795c8bd9ea8/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 6.6 MB/s | 267 kB 00:00 fedora 52 MB/s | 69 MB 00:01 Package python3-dnf-4.16.2-4.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k Installing dependencies: dbus-libs aarch64 1:1.14.10-1.fc40 fedora 156 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus aarch64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd aarch64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 4.6 M Downloading Packages: (1/7): python3-dbus-1.3.2-4.fc39.aarch64.rpm 6.7 MB/s | 157 kB 00:00 (2/7): python3-distro-1.8.0-6.fc39.noarch.rpm 16 MB/s | 49 kB 00:00 (3/7): dbus-libs-1.14.10-1.fc40.aarch64.rpm 5.4 MB/s | 156 kB 00:00 (4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 11 MB/s | 355 kB 00:00 (5/7): python3-six-1.16.0-12.fc39.noarch.rpm 12 MB/s | 41 kB 00:00 (6/7): python3-systemd-235-5.fc39.aarch64.rpm 26 MB/s | 107 kB 00:00 (7/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 2.1 MB/s | 293 kB 00:00 -------------------------------------------------------------------------------- Total 4.0 MB/s | 1.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.aarch64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.aarch64 5/7 Installing : python3-dbus-1.3.2-4.fc39.aarch64 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.aarch64 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.aarch64 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.aarch64 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.aarch64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.aarch64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1694930518.097321/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 64 kB/s | 1.5 kB 00:00 Copr repository 6.3 MB/s | 269 kB 00:00 fedora 79 kB/s | 8.7 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash aarch64 5.2.15-5.fc39 fedora 1.8 M bzip2 aarch64 1.0.8-16.fc39 fedora 52 k coreutils aarch64 9.4-1.fc40 fedora 1.2 M cpio aarch64 2.14-4.fc39 fedora 277 k diffutils aarch64 3.10-3.fc39 fedora 396 k fedora-release-common noarch 40-0.7 fedora 18 k findutils aarch64 1:4.9.0-6.fc40 fedora 495 k gawk aarch64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack aarch64 2.38.9000-8.fc40 fedora 73 k grep aarch64 3.11-5.fc40 fedora 296 k gzip aarch64 1.12-6.fc39 fedora 164 k info aarch64 7.0.3-3.fc39 fedora 179 k patch aarch64 2.7.6-22.fc39 fedora 123 k redhat-rpm-config noarch 270-1.fc40 copr_base 74 k rpm-build aarch64 4.18.99-1.fc40 fedora 79 k sed aarch64 4.8-14.fc39 fedora 304 k shadow-utils aarch64 2:4.14.0-1.fc40 fedora 1.3 M tar aarch64 2:1.35-2.fc40 fedora 854 k unzip aarch64 6.0-62.fc39 fedora 183 k util-linux aarch64 2.39.2-1.fc40 fedora 1.2 M which aarch64 2.21-40.fc39 fedora 42 k xz aarch64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives aarch64 1.25-1.fc39 fedora 38 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs aarch64 3.1.2-4.fc40 fedora 118 k authselect aarch64 1.4.2-3.fc39 fedora 144 k authselect-libs aarch64 1.4.2-3.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils aarch64 2.41-5.fc40 fedora 6.7 M binutils-gold aarch64 2.41-5.fc40 fedora 948 k bzip2-libs aarch64 1.0.8-16.fc39 fedora 43 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k coreutils-common aarch64 9.4-1.fc40 fedora 2.1 M cracklib aarch64 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k curl aarch64 8.3.0-1.fc40 fedora 350 k cyrus-sasl-lib aarch64 2.1.28-11.fc39 fedora 781 k debugedit aarch64 5.0-10.fc39 fedora 77 k dwz aarch64 0.15-3.fc39 fedora 136 k ed aarch64 1.19-4.fc39 fedora 78 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils aarch64 0.189-6.fc40 fedora 539 k elfutils-debuginfod-client aarch64 0.189-6.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k elfutils-libelf aarch64 0.189-6.fc40 fedora 194 k elfutils-libs aarch64 0.189-6.fc40 fedora 258 k fedora-gpg-keys noarch 40-0.1 fedora 130 k fedora-release noarch 40-0.7 fedora 8.0 k fedora-release-identity-basic noarch 40-0.7 fedora 8.8 k fedora-repos noarch 40-0.1 fedora 9.4 k fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k file aarch64 5.45-1.fc40 fedora 49 k file-libs aarch64 5.45-1.fc40 fedora 761 k filesystem aarch64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal aarch64 13.2-8.fc40 fedora 3.8 M gdbm-libs aarch64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc aarch64 2.38.9000-8.fc40 fedora 1.7 M glibc-common aarch64 2.38.9000-8.fc40 fedora 351 k glibc-gconv-extra aarch64 2.38.9000-8.fc40 fedora 2.0 M gmp aarch64 1:6.2.1-5.fc39 fedora 266 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k jansson aarch64 2.13.1-7.fc39 fedora 46 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs aarch64 1.6.1-7.fc39 fedora 31 k krb5-libs aarch64 1.21.2-1.fc40 fedora 772 k libacl aarch64 2.3.1-9.fc40 fedora 23 k libarchive aarch64 3.7.2-1.fc40 fedora 402 k libattr aarch64 2.5.1-9.fc40 fedora 18 k libblkid aarch64 2.39.2-1.fc40 fedora 115 k libbrotli aarch64 1.1.0-1.fc40 fedora 344 k libcap aarch64 2.48-7.fc39 fedora 68 k libcap-ng aarch64 0.8.3-8.fc40 fedora 32 k libcom_err aarch64 1.47.0-2.fc39 fedora 26 k libcurl aarch64 8.3.0-1.fc40 fedora 337 k libdb aarch64 5.3.28-58.fc40 fedora 735 k libeconf aarch64 0.5.2-1.fc40 fedora 30 k libevent aarch64 2.1.12-9.fc39 fedora 254 k libfdisk aarch64 2.39.2-1.fc40 fedora 158 k libffi aarch64 3.4.4-4.fc39 fedora 38 k libgcc aarch64 13.2.1-1.fc40 copr_base 94 k libgomp aarch64 13.2.1-1.fc40 copr_base 311 k libidn2 aarch64 2.3.4-3.fc39 fedora 118 k libmount aarch64 2.39.2-1.fc40 fedora 153 k libnghttp2 aarch64 1.56.0-1.fc40 fedora 75 k libnsl2 aarch64 2.0.0-6.fc39 fedora 30 k libpkgconf aarch64 1.9.5-2.fc39 fedora 38 k libpsl aarch64 0.21.2-4.fc39 fedora 63 k libpwquality aarch64 1.4.5-6.fc39 fedora 120 k libselinux aarch64 3.5-5.fc39 fedora 86 k libsemanage aarch64 3.5-4.fc39 fedora 117 k libsepol aarch64 3.5-2.fc39 fedora 311 k libsigsegv aarch64 2.14-5.fc39 fedora 27 k libsmartcols aarch64 2.39.2-1.fc40 fedora 65 k libssh aarch64 0.10.5-2.fc39 fedora 212 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ aarch64 13.2.1-1.fc40 copr_base 810 k libtasn1 aarch64 4.19.0-3.fc39 fedora 73 k libtirpc aarch64 1.3.3-1.rc2.fc39 fedora 95 k libunistring aarch64 1.1-5.fc40 fedora 540 k libutempter aarch64 1.2.1-10.fc39 fedora 27 k libuuid aarch64 2.39.2-1.fc40 fedora 28 k libverto aarch64 0.3.2-6.fc39 fedora 21 k libxcrypt aarch64 4.4.36-2.fc39 fedora 123 k libxml2 aarch64 2.11.5-1.fc40 fedora 687 k libzstd aarch64 1.5.5-4.fc39 fedora 280 k lua-libs aarch64 5.4.6-3.fc39 fedora 131 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs aarch64 1.9.4-4.fc39 fedora 68 k mpfr aarch64 4.2.0-3.fc39 fedora 319 k ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k ncurses-libs aarch64 6.4-7.20230520.fc40 fedora 326 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap aarch64 2.6.6-1.fc39 fedora 251 k openssl-libs aarch64 1:3.1.1-4.fc40 fedora 2.0 M p11-kit aarch64 0.25.0-2.fc39 fedora 481 k p11-kit-trust aarch64 0.25.0-2.fc39 fedora 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam aarch64 1.5.3-2.fc39 fedora 558 k pam-libs aarch64 1.5.3-2.fc39 fedora 58 k pcre2 aarch64 10.42-1.fc39.2 fedora 219 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf aarch64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config aarch64 1.9.5-2.fc39 fedora 9.6 k popt aarch64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k readline aarch64 8.2-4.fc39 fedora 211 k rpm aarch64 4.18.99-1.fc40 fedora 537 k rpm-build-libs aarch64 4.18.99-1.fc40 fedora 92 k rpm-libs aarch64 4.18.99-1.fc40 fedora 305 k rpm-sequoia aarch64 1.5.0-1.fc40 fedora 842 k rust-srpm-macros noarch 24-5.fc40 fedora 12 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs aarch64 3.43.1-1.fc40 fedora 679 k systemd-libs aarch64 254.1-2.fc40 fedora 668 k tzdata noarch 2023c-3.fc40 fedora 718 k util-linux-core aarch64 2.39.2-1.fc40 fedora 490 k xxhash-libs aarch64 0.8.2-1.fc39 fedora 35 k xz-libs aarch64 5.4.4-1.fc39 fedora 106 k zip aarch64 3.0-38.fc39 fedora 262 k zlib-ng-compat aarch64 2.1.3-3.fc40 copr_base 68 k zstd aarch64 1.5.5-4.fc39 fedora 446 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total size: 53 M Installed size: 304 M Downloading Packages: [SKIPPED] libgcc-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libgomp-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libstdc++-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-270-1.fc40.noarch.rpm: Already downloaded [SKIPPED] zlib-ng-compat-2.1.3-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] alternatives-1.25-1.fc39.aarch64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-4.fc40.aarch64.rpm: Already downloaded [SKIPPED] authselect-1.4.2-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-5.fc39.aarch64.rpm: Already downloaded [SKIPPED] binutils-2.41-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] binutils-gold-2.41-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.aarch64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.aarch64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.4-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] coreutils-common-9.4-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] cpio-2.14-4.fc39.aarch64.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.aarch64.rpm: Already downloaded [SKIPPED] crypto-policies-20230731-1.git5ed06e0.fc39.noarch.rpm: Already downloaded [SKIPPED] curl-8.3.0-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.aarch64.rpm: Already downloaded [SKIPPED] debugedit-5.0-10.fc39.aarch64.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.aarch64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.189-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.189-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.189-6.fc40.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.189-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.189-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-40-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-40-0.7.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-40-0.7.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-40-0.7.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-40-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-40-0.1.noarch.rpm: Already downloaded [SKIPPED] file-5.45-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] file-libs-5.45-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.aarch64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-6.fc40.aarch64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] forge-srpm-macros-0.1.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.aarch64.rpm: Already downloaded [SKIPPED] gdb-minimal-13.2-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-4.fc39.aarch64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-2.fc39.noarch.rpm: Already downloaded [SKIPPED] glibc-2.38.9000-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] glibc-common-2.38.9000-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.38.9000-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.38.9000-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] gmp-6.2.1-5.fc39.aarch64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-3.fc39.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-7.fc40.noarch.rpm: Already downloaded [SKIPPED] grep-3.11-5.fc40.aarch64.rpm: Already downloaded [SKIPPED] gzip-1.12-6.fc39.aarch64.rpm: Already downloaded 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Running transaction test Transaction test succeeded. 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redhat-rpm-config-270-1.fc40.noarch 149/153 Installing : rpm-build-4.18.99-1.fc40.aarch64 150/153 Installing : util-linux-2.39.2-1.fc40.aarch64 151/153 Installing : which-2.21-40.fc39.aarch64 152/153 Installing : info-7.0.3-3.fc39.aarch64 153/153 Running scriptlet: filesystem-3.18-6.fc39.aarch64 153/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64 153/153 Running scriptlet: rpm-4.18.99-1.fc40.aarch64 153/153 Running scriptlet: info-7.0.3-3.fc39.aarch64 153/153 Verifying : libgcc-13.2.1-1.fc40.aarch64 1/153 Verifying : libgomp-13.2.1-1.fc40.aarch64 2/153 Verifying : libstdc++-13.2.1-1.fc40.aarch64 3/153 Verifying : redhat-rpm-config-270-1.fc40.noarch 4/153 Verifying : zlib-ng-compat-2.1.3-3.fc40.aarch64 5/153 Verifying : alternatives-1.25-1.fc39.aarch64 6/153 Verifying : ansible-srpm-macros-1-11.fc39.noarch 7/153 Verifying : audit-libs-3.1.2-4.fc40.aarch64 8/153 Verifying : authselect-1.4.2-3.fc39.aarch64 9/153 Verifying : authselect-libs-1.4.2-3.fc39.aarch64 10/153 Verifying : basesystem-11-18.fc39.noarch 11/153 Verifying : bash-5.2.15-5.fc39.aarch64 12/153 Verifying : binutils-2.41-5.fc40.aarch64 13/153 Verifying : binutils-gold-2.41-5.fc40.aarch64 14/153 Verifying : bzip2-1.0.8-16.fc39.aarch64 15/153 Verifying : bzip2-libs-1.0.8-16.fc39.aarch64 16/153 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 17/153 Verifying : coreutils-9.4-1.fc40.aarch64 18/153 Verifying : coreutils-common-9.4-1.fc40.aarch64 19/153 Verifying : cpio-2.14-4.fc39.aarch64 20/153 Verifying : cracklib-2.9.11-2.fc39.aarch64 21/153 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 22/153 Verifying : curl-8.3.0-1.fc40.aarch64 23/153 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.aarch64 24/153 Verifying : debugedit-5.0-10.fc39.aarch64 25/153 Verifying : diffutils-3.10-3.fc39.aarch64 26/153 Verifying : dwz-0.15-3.fc39.aarch64 27/153 Verifying : ed-1.19-4.fc39.aarch64 28/153 Verifying : efi-srpm-macros-5-9.fc39.noarch 29/153 Verifying : elfutils-0.189-6.fc40.aarch64 30/153 Verifying : elfutils-debuginfod-client-0.189-6.fc40.aarch64 31/153 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 32/153 Verifying : elfutils-libelf-0.189-6.fc40.aarch64 33/153 Verifying : elfutils-libs-0.189-6.fc40.aarch64 34/153 Verifying : fedora-gpg-keys-40-0.1.noarch 35/153 Verifying : fedora-release-40-0.7.noarch 36/153 Verifying : fedora-release-common-40-0.7.noarch 37/153 Verifying : fedora-release-identity-basic-40-0.7.noarch 38/153 Verifying : fedora-repos-40-0.1.noarch 39/153 Verifying : fedora-repos-rawhide-40-0.1.noarch 40/153 Verifying : file-5.45-1.fc40.aarch64 41/153 Verifying : file-libs-5.45-1.fc40.aarch64 42/153 Verifying : filesystem-3.18-6.fc39.aarch64 43/153 Verifying : findutils-1:4.9.0-6.fc40.aarch64 44/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 45/153 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 46/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 47/153 Verifying : gawk-5.2.2-2.fc39.aarch64 48/153 Verifying : gdb-minimal-13.2-8.fc40.aarch64 49/153 Verifying : gdbm-libs-1:1.23-4.fc39.aarch64 50/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 51/153 Verifying : glibc-2.38.9000-8.fc40.aarch64 52/153 Verifying : glibc-common-2.38.9000-8.fc40.aarch64 53/153 Verifying : glibc-gconv-extra-2.38.9000-8.fc40.aarch64 54/153 Verifying : glibc-minimal-langpack-2.38.9000-8.fc40.aarch64 55/153 Verifying : gmp-1:6.2.1-5.fc39.aarch64 56/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 57/153 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 58/153 Verifying : grep-3.11-5.fc40.aarch64 59/153 Verifying : gzip-1.12-6.fc39.aarch64 60/153 Verifying : info-7.0.3-3.fc39.aarch64 61/153 Verifying : jansson-2.13.1-7.fc39.aarch64 62/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 63/153 Verifying : keyutils-libs-1.6.1-7.fc39.aarch64 64/153 Verifying : krb5-libs-1.21.2-1.fc40.aarch64 65/153 Verifying : libacl-2.3.1-9.fc40.aarch64 66/153 Verifying : libarchive-3.7.2-1.fc40.aarch64 67/153 Verifying : libattr-2.5.1-9.fc40.aarch64 68/153 Verifying : libblkid-2.39.2-1.fc40.aarch64 69/153 Verifying : libbrotli-1.1.0-1.fc40.aarch64 70/153 Verifying : libcap-2.48-7.fc39.aarch64 71/153 Verifying : libcap-ng-0.8.3-8.fc40.aarch64 72/153 Verifying : libcom_err-1.47.0-2.fc39.aarch64 73/153 Verifying : libcurl-8.3.0-1.fc40.aarch64 74/153 Verifying : libdb-5.3.28-58.fc40.aarch64 75/153 Verifying : libeconf-0.5.2-1.fc40.aarch64 76/153 Verifying : libevent-2.1.12-9.fc39.aarch64 77/153 Verifying : libfdisk-2.39.2-1.fc40.aarch64 78/153 Verifying : libffi-3.4.4-4.fc39.aarch64 79/153 Verifying : libidn2-2.3.4-3.fc39.aarch64 80/153 Verifying : libmount-2.39.2-1.fc40.aarch64 81/153 Verifying : libnghttp2-1.56.0-1.fc40.aarch64 82/153 Verifying : libnsl2-2.0.0-6.fc39.aarch64 83/153 Verifying : libpkgconf-1.9.5-2.fc39.aarch64 84/153 Verifying : libpsl-0.21.2-4.fc39.aarch64 85/153 Verifying : libpwquality-1.4.5-6.fc39.aarch64 86/153 Verifying : libselinux-3.5-5.fc39.aarch64 87/153 Verifying : libsemanage-3.5-4.fc39.aarch64 88/153 Verifying : libsepol-3.5-2.fc39.aarch64 89/153 Verifying : libsigsegv-2.14-5.fc39.aarch64 90/153 Verifying : libsmartcols-2.39.2-1.fc40.aarch64 91/153 Verifying : libssh-0.10.5-2.fc39.aarch64 92/153 Verifying : libssh-config-0.10.5-2.fc39.noarch 93/153 Verifying : libtasn1-4.19.0-3.fc39.aarch64 94/153 Verifying : libtirpc-1.3.3-1.rc2.fc39.aarch64 95/153 Verifying : libunistring-1.1-5.fc40.aarch64 96/153 Verifying : libutempter-1.2.1-10.fc39.aarch64 97/153 Verifying : libuuid-2.39.2-1.fc40.aarch64 98/153 Verifying : libverto-0.3.2-6.fc39.aarch64 99/153 Verifying : libxcrypt-4.4.36-2.fc39.aarch64 100/153 Verifying : libxml2-2.11.5-1.fc40.aarch64 101/153 Verifying : libzstd-1.5.5-4.fc39.aarch64 102/153 Verifying : lua-libs-5.4.6-3.fc39.aarch64 103/153 Verifying : lua-srpm-macros-1-9.fc39.noarch 104/153 Verifying : lz4-libs-1.9.4-4.fc39.aarch64 105/153 Verifying : mpfr-4.2.0-3.fc39.aarch64 106/153 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 107/153 Verifying : ncurses-libs-6.4-7.20230520.fc40.aarch64 108/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 109/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 110/153 Verifying : openldap-2.6.6-1.fc39.aarch64 111/153 Verifying : openssl-libs-1:3.1.1-4.fc40.aarch64 112/153 Verifying : p11-kit-0.25.0-2.fc39.aarch64 113/153 Verifying : p11-kit-trust-0.25.0-2.fc39.aarch64 114/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 115/153 Verifying : pam-1.5.3-2.fc39.aarch64 116/153 Verifying : pam-libs-1.5.3-2.fc39.aarch64 117/153 Verifying : patch-2.7.6-22.fc39.aarch64 118/153 Verifying : pcre2-10.42-1.fc39.2.aarch64 119/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 120/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 121/153 Verifying : pkgconf-1.9.5-2.fc39.aarch64 122/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 123/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.aarch64 124/153 Verifying : popt-1.19-3.fc39.aarch64 125/153 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 126/153 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 127/153 Verifying : python-srpm-macros-3.12-4.fc40.noarch 128/153 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 129/153 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 130/153 Verifying : readline-8.2-4.fc39.aarch64 131/153 Verifying : rpm-4.18.99-1.fc40.aarch64 132/153 Verifying : rpm-build-4.18.99-1.fc40.aarch64 133/153 Verifying : rpm-build-libs-4.18.99-1.fc40.aarch64 134/153 Verifying : rpm-libs-4.18.99-1.fc40.aarch64 135/153 Verifying : rpm-sequoia-1.5.0-1.fc40.aarch64 136/153 Verifying : rust-srpm-macros-24-5.fc40.noarch 137/153 Verifying : sed-4.8-14.fc39.aarch64 138/153 Verifying : setup-2.14.4-1.fc39.noarch 139/153 Verifying : shadow-utils-2:4.14.0-1.fc40.aarch64 140/153 Verifying : sqlite-libs-3.43.1-1.fc40.aarch64 141/153 Verifying : systemd-libs-254.1-2.fc40.aarch64 142/153 Verifying : tar-2:1.35-2.fc40.aarch64 143/153 Verifying : tzdata-2023c-3.fc40.noarch 144/153 Verifying : unzip-6.0-62.fc39.aarch64 145/153 Verifying : util-linux-2.39.2-1.fc40.aarch64 146/153 Verifying : util-linux-core-2.39.2-1.fc40.aarch64 147/153 Verifying : which-2.21-40.fc39.aarch64 148/153 Verifying : xxhash-libs-0.8.2-1.fc39.aarch64 149/153 Verifying : xz-5.4.4-1.fc39.aarch64 150/153 Verifying : xz-libs-5.4.4-1.fc39.aarch64 151/153 Verifying : zip-3.0-38.fc39.aarch64 152/153 Verifying : zstd-1.5.5-4.fc39.aarch64 153/153 Installed: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.2-3.fc39.aarch64 authselect-libs-1.4.2-3.fc39.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-5.fc40.aarch64 binutils-gold-2.41-5.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc39.aarch64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc39.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-1:4.9.0-6.fc40.aarch64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-8.fc40.aarch64 gdbm-libs-1:1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-8.fc40.aarch64 glibc-common-2.38.9000-8.fc40.aarch64 glibc-gconv-extra-2.38.9000-8.fc40.aarch64 glibc-minimal-langpack-2.38.9000-8.fc40.aarch64 gmp-1:6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.0.3-3.fc39.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-1.fc40.aarch64 libacl-2.3.1-9.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.3.0-1.fc40.aarch64 libdb-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-1.fc40.aarch64 libgomp-13.2.1-1.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.56.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc39.aarch64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.3-1.rc2.fc39.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc39.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.0-3.fc39.aarch64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.aarch64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-1:3.1.1-4.fc40.aarch64 p11-kit-0.25.0-2.fc39.aarch64 p11-kit-trust-0.25.0-2.fc39.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.aarch64 pam-libs-1.5.3-2.fc39.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.aarch64 rpm-build-4.18.99-1.fc40.aarch64 rpm-build-libs-4.18.99-1.fc40.aarch64 rpm-libs-4.18.99-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.aarch64 sqlite-libs-3.43.1-1.fc40.aarch64 systemd-libs-254.1-2.fc40.aarch64 tar-2:1.35-2.fc40.aarch64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-38.fc39.aarch64 zlib-ng-compat-2.1.3-3.fc40.aarch64 zstd-1.5.5-4.fc39.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.2-3.fc39.aarch64 authselect-libs-1.4.2-3.fc39.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-5.fc40.aarch64 binutils-gold-2.41-5.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc39.aarch64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc39.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-4.9.0-6.fc40.aarch64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-8.fc40.aarch64 gdbm-libs-1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-8.fc40.aarch64 glibc-common-2.38.9000-8.fc40.aarch64 glibc-gconv-extra-2.38.9000-8.fc40.aarch64 glibc-minimal-langpack-2.38.9000-8.fc40.aarch64 gmp-6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.0.3-3.fc39.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-1.fc40.aarch64 libacl-2.3.1-9.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.3.0-1.fc40.aarch64 libdb-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-1.fc40.aarch64 libgomp-13.2.1-1.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.56.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc39.aarch64 libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.3-1.rc2.fc39.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc39.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.0-3.fc39.aarch64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.aarch64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-3.1.1-4.fc40.aarch64 p11-kit-0.25.0-2.fc39.aarch64 p11-kit-trust-0.25.0-2.fc39.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.aarch64 pam-libs-1.5.3-2.fc39.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.aarch64 rpm-build-4.18.99-1.fc40.aarch64 rpm-build-libs-4.18.99-1.fc40.aarch64 rpm-libs-4.18.99-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.aarch64 sqlite-libs-3.43.1-1.fc40.aarch64 systemd-libs-254.1-2.fc40.aarch64 tar-1.35-2.fc40.aarch64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-38.fc39.aarch64 zlib-ng-compat-2.1.3-3.fc40.aarch64 zstd-1.5.5-4.fc39.aarch64 Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/bfast-0.7.0a-32.fc40.src.rpm RPM build warnings: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1694930518.097321/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1694930518.097321/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1694930518.097321/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-0zpaky0m/bfast/bfast.spec) Config(child) 0 minutes 37 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/bfast-0.7.0a-32.fc40.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1694930518.097321/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1694930518.097321/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1694930518.097321/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.99-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for bfast-0.7.0a-32.fc40.src.rpm Start: build setup for bfast-0.7.0a-32.fc40.src.rpm warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/bfast-0.7.0a-32.fc40.src.rpm RPM build warnings: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 84 kB/s | 1.5 kB 00:00 Copr repository 5.8 MB/s | 271 kB 00:00 fedora 113 kB/s | 8.7 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: autoconf noarch 2.71-7.fc40 fedora 733 k automake noarch 1.16.5-14.fc40 fedora 697 k bzip2-devel aarch64 1.0.8-16.fc39 fedora 214 k gcc aarch64 13.2.1-1.fc40 copr_base 31 M make aarch64 1:4.4.1-2.fc39 fedora 585 k perl-generators noarch 1.16-3.fc39 fedora 16 k zlib-ng-compat-devel aarch64 2.1.3-3.fc40 copr_base 34 k Installing dependencies: annobin-docs noarch 12.26-1.fc40 fedora 94 k annobin-plugin-gcc aarch64 12.26-1.fc40 fedora 958 k cpp aarch64 13.2.1-1.fc40 copr_base 9.7 M emacs-filesystem noarch 1:29.1-1.fc39 fedora 8.4 k gc aarch64 8.2.2-4.fc39 fedora 110 k gcc-plugin-annobin aarch64 13.2.1-1.fc40 copr_base 47 k glibc-devel aarch64 2.38.9000-8.fc40 fedora 581 k groff-base aarch64 1.23.0-2.fc39 fedora 1.1 M guile22 aarch64 2.2.7-9.fc39 fedora 6.5 M kernel-headers aarch64 6.6.0-0.rc1.git0.1.fc40 fedora 1.5 M libasan aarch64 13.2.1-1.fc40 copr_base 455 k libatomic aarch64 13.2.1-1.fc40 copr_base 36 k libmpc aarch64 1.3.1-3.fc39 fedora 72 k libtool-ltdl aarch64 2.4.7-8.fc40 fedora 36 k libubsan aarch64 13.2.1-1.fc40 copr_base 204 k libxcrypt-devel aarch64 4.4.36-2.fc39 fedora 30 k m4 aarch64 1.4.19-7.fc40 fedora 299 k ncurses aarch64 6.4-7.20230520.fc40 fedora 415 k perl-AutoLoader noarch 5.74-500.fc39 fedora 21 k perl-B aarch64 1.88-500.fc39 fedora 178 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Struct noarch 0.68-500.fc39 fedora 22 k perl-Data-Dumper aarch64 2.188-501.fc39 fedora 55 k perl-Digest noarch 1.20-500.fc39 fedora 25 k perl-Digest-MD5 aarch64 2.58-500.fc39 fedora 36 k perl-DynaLoader aarch64 1.54-500.fc39 fedora 26 k perl-Encode aarch64 4:3.19-500.fc39 fedora 1.7 M perl-Errno aarch64 1.37-500.fc39 fedora 15 k perl-Exporter noarch 5.77-500.fc39 fedora 31 k perl-Fcntl aarch64 1.15-500.fc39 fedora 21 k perl-Fedora-VSP noarch 0.001-32.fc39 fedora 23 k perl-File-Basename noarch 2.86-500.fc39 fedora 17 k perl-File-Compare noarch 1.100.700-500.fc39 fedora 13 k perl-File-Copy noarch 2.41-500.fc39 fedora 20 k perl-File-Find noarch 1.43-500.fc39 fedora 25 k perl-File-Path noarch 2.18-500.fc39 fedora 35 k perl-File-Temp noarch 1:0.231.100-500.fc39 fedora 58 k perl-File-stat noarch 1.13-500.fc39 fedora 17 k perl-FileHandle noarch 2.05-500.fc39 fedora 16 k perl-Getopt-Long noarch 1:2.54-500.fc39 fedora 60 k perl-Getopt-Std noarch 1.13-500.fc39 fedora 16 k perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k perl-IO aarch64 1.52-500.fc39 fedora 83 k perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k perl-IO-Socket-SSL noarch 2.083-3.fc39 fedora 225 k perl-IPC-Open3 noarch 1.22-500.fc39 fedora 22 k perl-MIME-Base64 aarch64 3.16-500.fc39 fedora 30 k perl-Mozilla-CA noarch 20230821-1.fc40 fedora 13 k perl-Net-SSLeay aarch64 1.92-10.fc39 fedora 356 k perl-POSIX aarch64 2.13-500.fc39 fedora 98 k perl-PathTools aarch64 3.89-500.fc39 fedora 88 k perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k perl-Scalar-List-Utils aarch64 5:1.63-500.fc39 fedora 71 k perl-SelectSaver noarch 1.02-500.fc39 fedora 12 k perl-Socket aarch64 4:2.037-3.fc39 fedora 56 k perl-Storable aarch64 1:3.32-500.fc39 fedora 97 k perl-Symbol noarch 1.09-500.fc39 fedora 14 k perl-Term-ANSIColor noarch 5.01-501.fc39 fedora 47 k perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k perl-Thread-Queue noarch 3.14-501.fc40 fedora 21 k perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k perl-URI noarch 5.21-1.fc40 fedora 125 k perl-base noarch 2.27-500.fc39 fedora 16 k perl-constant noarch 1.33-501.fc39 fedora 22 k perl-if noarch 0.61.000-500.fc39 fedora 14 k perl-interpreter aarch64 4:5.38.0-500.fc39 fedora 72 k perl-libnet noarch 3.15-501.fc39 fedora 129 k perl-libs aarch64 4:5.38.0-500.fc39 fedora 2.3 M perl-locale noarch 1.10-500.fc39 fedora 14 k perl-macros noarch 4:5.38.0-500.fc39 fedora 12 k perl-mro aarch64 1.28-500.fc39 fedora 29 k perl-overload noarch 1.37-500.fc39 fedora 46 k perl-overloading noarch 0.02-500.fc39 fedora 13 k perl-parent noarch 1:0.241-500.fc39 fedora 14 k perl-podlators noarch 1:5.01-500.fc39 fedora 125 k perl-threads aarch64 1:2.36-500.fc39 fedora 57 k perl-threads-shared aarch64 1.68-500.fc39 fedora 44 k perl-vars noarch 1.05-500.fc39 fedora 13 k Transaction Summary ================================================================================ Install 90 Packages Total size: 63 M Total download size: 11 M Installed size: 216 M Downloading Packages: [SKIPPED] cpp-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] gcc-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libasan-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libatomic-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libubsan-13.2.1-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] zlib-ng-compat-devel-2.1.3-3.fc40.aarch64.rpm: Already downloaded [SKIPPED] annobin-docs-12.26-1.fc40.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.26-1.fc40.aarch64.rpm: Already downloaded [SKIPPED] gc-8.2.2-4.fc39.aarch64.rpm: Already downloaded [SKIPPED] glibc-devel-2.38.9000-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-9.fc39.aarch64.rpm: Already downloaded [SKIPPED] kernel-headers-6.6.0-0.rc1.git0.1.fc40.aarch64.rpm: Already downloaded [SKIPPED] libmpc-1.3.1-3.fc39.aarch64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-8.fc40.aarch64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.36-2.fc39.aarch64.rpm: Already downloaded [SKIPPED] make-4.4.1-2.fc39.aarch64.rpm: Already downloaded (18/90): bzip2-devel-1.0.8-16.fc39.aarch64.rpm 9.8 MB/s | 214 kB 00:00 (19/90): emacs-filesystem-29.1-1.fc39.noarch.rp 4.9 MB/s | 8.4 kB 00:00 (20/90): automake-1.16.5-14.fc40.noarch.rpm 26 MB/s | 697 kB 00:00 (21/90): autoconf-2.71-7.fc40.noarch.rpm 25 MB/s | 733 kB 00:00 (22/90): m4-1.4.19-7.fc40.aarch64.rpm 51 MB/s | 299 kB 00:00 (23/90): perl-AutoLoader-5.74-500.fc39.noarch.r 9.2 MB/s | 21 kB 00:00 (24/90): perl-B-1.88-500.fc39.aarch64.rpm 22 MB/s | 178 kB 00:00 (25/90): perl-Carp-1.54-500.fc39.noarch.rpm 12 MB/s | 29 kB 00:00 (26/90): perl-Class-Struct-0.68-500.fc39.noarch 10 MB/s | 22 kB 00:00 (27/90): perl-Data-Dumper-2.188-501.fc39.aarch6 14 MB/s | 55 kB 00:00 (28/90): groff-base-1.23.0-2.fc39.aarch64.rpm 36 MB/s | 1.1 MB 00:00 (29/90): perl-Digest-1.20-500.fc39.noarch.rpm 8.3 MB/s | 25 kB 00:00 (30/90): perl-Digest-MD5-2.58-500.fc39.aarch64. 17 MB/s | 36 kB 00:00 (31/90): perl-DynaLoader-1.54-500.fc39.aarch64. 8.8 MB/s | 26 kB 00:00 (32/90): perl-Errno-1.37-500.fc39.aarch64.rpm 6.8 MB/s | 15 kB 00:00 (33/90): perl-Exporter-5.77-500.fc39.noarch.rpm 13 MB/s | 31 kB 00:00 (34/90): perl-Fcntl-1.15-500.fc39.aarch64.rpm 10 MB/s | 21 kB 00:00 (35/90): perl-Fedora-VSP-0.001-32.fc39.noarch.r 16 MB/s | 23 kB 00:00 (36/90): perl-File-Basename-2.86-500.fc39.noarc 8.8 MB/s | 17 kB 00:00 (37/90): perl-File-Compare-1.100.700-500.fc39.n 9.0 MB/s | 13 kB 00:00 (38/90): perl-File-Copy-2.41-500.fc39.noarch.rp 11 MB/s | 20 kB 00:00 (39/90): perl-File-Find-1.43-500.fc39.noarch.rp 12 MB/s | 25 kB 00:00 (40/90): perl-Encode-3.19-500.fc39.aarch64.rpm 41 MB/s | 1.7 MB 00:00 (41/90): perl-File-Temp-0.231.100-500.fc39.noar 19 MB/s | 58 kB 00:00 (42/90): perl-File-stat-1.13-500.fc39.noarch.rp 7.0 MB/s | 17 kB 00:00 (43/90): perl-File-Path-2.18-500.fc39.noarch.rp 1.1 MB/s | 35 kB 00:00 (44/90): perl-FileHandle-2.05-500.fc39.noarch.r 9.0 MB/s | 16 kB 00:00 (45/90): perl-Getopt-Long-2.54-500.fc39.noarch. 17 MB/s | 60 kB 00:00 (46/90): perl-Getopt-Std-1.13-500.fc39.noarch.r 6.4 MB/s | 16 kB 00:00 (47/90): perl-HTTP-Tiny-0.088-3.fc39.noarch.rpm 20 MB/s | 56 kB 00:00 (48/90): perl-IO-1.52-500.fc39.aarch64.rpm 25 MB/s | 83 kB 00:00 (49/90): perl-IO-Socket-IP-0.42-1.fc39.noarch.r 17 MB/s | 42 kB 00:00 (50/90): perl-IO-Socket-SSL-2.083-3.fc39.noarch 69 MB/s | 225 kB 00:00 (51/90): perl-IPC-Open3-1.22-500.fc39.noarch.rp 8.8 MB/s | 22 kB 00:00 (52/90): perl-Mozilla-CA-20230821-1.fc40.noarch 8.7 MB/s | 13 kB 00:00 (53/90): perl-Net-SSLeay-1.92-10.fc39.aarch64.r 21 MB/s | 356 kB 00:00 (54/90): perl-MIME-Base64-3.16-500.fc39.aarch64 1.3 MB/s | 30 kB 00:00 (55/90): perl-POSIX-2.13-500.fc39.aarch64.rpm 24 MB/s | 98 kB 00:00 (56/90): perl-Pod-Escapes-1.07-501.fc40.noarch. 9.5 MB/s | 19 kB 00:00 (57/90): perl-Pod-Perldoc-3.28.01-501.fc39.noar 34 MB/s | 86 kB 00:00 (58/90): perl-Pod-Simple-3.45-4.fc39.noarch.rpm 41 MB/s | 218 kB 00:00 (59/90): perl-Pod-Usage-2.03-500.fc39.noarch.rp 14 MB/s | 39 kB 00:00 (60/90): perl-PathTools-3.89-500.fc39.aarch64.r 4.9 MB/s | 88 kB 00:00 (61/90): perl-SelectSaver-1.02-500.fc39.noarch. 5.5 MB/s | 12 kB 00:00 (62/90): perl-Scalar-List-Utils-1.63-500.fc39.a 9.7 MB/s | 71 kB 00:00 (63/90): perl-Socket-2.037-3.fc39.aarch64.rpm 21 MB/s | 56 kB 00:00 (64/90): perl-Symbol-1.09-500.fc39.noarch.rpm 4.7 MB/s | 14 kB 00:00 (65/90): perl-Term-ANSIColor-5.01-501.fc39.noar 20 MB/s | 47 kB 00:00 (66/90): perl-Term-Cap-1.18-500.fc39.noarch.rpm 10 MB/s | 22 kB 00:00 (67/90): perl-Text-ParseWords-3.31-500.fc39.noa 2.0 MB/s | 16 kB 00:00 (68/90): perl-Text-Tabs+Wrap-2023.0511-3.fc39.n 9.3 MB/s | 22 kB 00:00 (69/90): perl-Thread-Queue-3.14-501.fc40.noarch 9.0 MB/s | 21 kB 00:00 (70/90): perl-Time-Local-1.350-3.fc39.noarch.rp 9.6 MB/s | 34 kB 00:00 (71/90): perl-URI-5.21-1.fc40.noarch.rpm 27 MB/s | 125 kB 00:00 (72/90): perl-base-2.27-500.fc39.noarch.rpm 8.3 MB/s | 16 kB 00:00 (73/90): perl-constant-1.33-501.fc39.noarch.rpm 12 MB/s | 22 kB 00:00 (74/90): perl-generators-1.16-3.fc39.noarch.rpm 12 MB/s | 16 kB 00:00 (75/90): perl-if-0.61.000-500.fc39.noarch.rpm 9.2 MB/s | 14 kB 00:00 (76/90): perl-interpreter-5.38.0-500.fc39.aarch 3.3 MB/s | 72 kB 00:00 (77/90): perl-libnet-3.15-501.fc39.noarch.rpm 29 MB/s | 129 kB 00:00 (78/90): perl-Storable-3.32-500.fc39.aarch64.rp 1.3 MB/s | 97 kB 00:00 (79/90): ncurses-6.4-7.20230520.fc40.aarch64.rp 1.9 MB/s | 415 kB 00:00 (80/90): perl-macros-5.38.0-500.fc39.noarch.rpm 7.2 MB/s | 12 kB 00:00 (81/90): perl-mro-1.28-500.fc39.aarch64.rpm 11 MB/s | 29 kB 00:00 (82/90): perl-locale-1.10-500.fc39.noarch.rpm 1.1 MB/s | 14 kB 00:00 (83/90): perl-overload-1.37-500.fc39.noarch.rpm 14 MB/s | 46 kB 00:00 (84/90): perl-parent-0.241-500.fc39.noarch.rpm 3.2 MB/s | 14 kB 00:00 (85/90): perl-overloading-0.02-500.fc39.noarch. 1.6 MB/s | 13 kB 00:00 (86/90): perl-podlators-5.01-500.fc39.noarch.rp 30 MB/s | 125 kB 00:00 (87/90): perl-threads-2.36-500.fc39.aarch64.rpm 22 MB/s | 57 kB 00:00 (88/90): perl-threads-shared-1.68-500.fc39.aarc 18 MB/s | 44 kB 00:00 (89/90): perl-vars-1.05-500.fc39.noarch.rpm 6.7 MB/s | 13 kB 00:00 (90/90): perl-libs-5.38.0-500.fc39.aarch64.rpm 52 MB/s | 2.3 MB 00:00 -------------------------------------------------------------------------------- Total 30 MB/s | 11 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.3.1-3.fc39.aarch64 1/90 Installing : cpp-13.2.1-1.fc40.aarch64 2/90 Installing : ncurses-6.4-7.20230520.fc40.aarch64 3/90 Installing : m4-1.4.19-7.fc40.aarch64 4/90 Installing : libtool-ltdl-2.4.7-8.fc40.aarch64 5/90 Installing : kernel-headers-6.6.0-0.rc1.git0.1.fc40.aarch64 6/90 Installing : libxcrypt-devel-4.4.36-2.fc39.aarch64 7/90 Installing : glibc-devel-2.38.9000-8.fc40.aarch64 8/90 Running scriptlet: groff-base-1.23.0-2.fc39.aarch64 9/90 Installing : groff-base-1.23.0-2.fc39.aarch64 9/90 Running scriptlet: groff-base-1.23.0-2.fc39.aarch64 9/90 Installing : perl-Digest-1.20-500.fc39.noarch 10/90 Installing : perl-Digest-MD5-2.58-500.fc39.aarch64 11/90 Installing : perl-B-1.88-500.fc39.aarch64 12/90 Installing : perl-FileHandle-2.05-500.fc39.noarch 13/90 Installing : perl-Data-Dumper-2.188-501.fc39.aarch64 14/90 Installing : perl-libnet-3.15-501.fc39.noarch 15/90 Installing : perl-AutoLoader-5.74-500.fc39.noarch 16/90 Installing : perl-base-2.27-500.fc39.noarch 17/90 Installing : perl-URI-5.21-1.fc40.noarch 18/90 Installing : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 19/90 Installing : perl-Mozilla-CA-20230821-1.fc40.noarch 20/90 Installing : perl-if-0.61.000-500.fc39.noarch 21/90 Installing : perl-locale-1.10-500.fc39.noarch 22/90 Installing : perl-IO-Socket-IP-0.42-1.fc39.noarch 23/90 Installing : perl-Time-Local-2:1.350-3.fc39.noarch 24/90 Installing : perl-File-Path-2.18-500.fc39.noarch 25/90 Installing : perl-IO-Socket-SSL-2.083-3.fc39.noarch 26/90 Installing : perl-Net-SSLeay-1.92-10.fc39.aarch64 27/90 Installing : perl-Pod-Escapes-1:1.07-501.fc40.noarch 28/90 Installing : perl-Class-Struct-0.68-500.fc39.noarch 29/90 Installing : perl-Term-ANSIColor-5.01-501.fc39.noarch 30/90 Installing : perl-POSIX-2.13-500.fc39.aarch64 31/90 Installing : perl-IPC-Open3-1.22-500.fc39.noarch 32/90 Installing : perl-File-Temp-1:0.231.100-500.fc39.noarch 33/90 Installing : perl-HTTP-Tiny-0.088-3.fc39.noarch 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52/90 Installing : perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64 53/90 Installing : perl-constant-1.33-501.fc39.noarch 54/90 Installing : perl-Storable-1:3.32-500.fc39.aarch64 55/90 Installing : perl-overload-1.37-500.fc39.noarch 56/90 Installing : perl-parent-1:0.241-500.fc39.noarch 57/90 Installing : perl-vars-1.05-500.fc39.noarch 58/90 Installing : perl-Getopt-Long-1:2.54-500.fc39.noarch 59/90 Installing : perl-Carp-1.54-500.fc39.noarch 60/90 Installing : perl-Exporter-5.77-500.fc39.noarch 61/90 Installing : perl-PathTools-3.89-500.fc39.aarch64 62/90 Installing : perl-DynaLoader-1.54-500.fc39.aarch64 63/90 Installing : perl-Encode-4:3.19-500.fc39.aarch64 64/90 Installing : perl-libs-4:5.38.0-500.fc39.aarch64 65/90 Installing : perl-interpreter-4:5.38.0-500.fc39.aarch64 66/90 Installing : perl-threads-1:2.36-500.fc39.aarch64 67/90 Installing : perl-threads-shared-1.68-500.fc39.aarch64 68/90 Installing : perl-Thread-Queue-3.14-501.fc40.noarch 69/90 Installing : perl-macros-4:5.38.0-500.fc39.noarch 70/90 Installing : perl-Fedora-VSP-0.001-32.fc39.noarch 71/90 Installing : perl-File-Compare-1.100.700-500.fc39.noarch 72/90 Installing : perl-File-Copy-2.41-500.fc39.noarch 73/90 Installing : perl-File-Find-1.43-500.fc39.noarch 74/90 Installing : gc-8.2.2-4.fc39.aarch64 75/90 Installing : guile22-2.2.7-9.fc39.aarch64 76/90 Installing : make-1:4.4.1-2.fc39.aarch64 77/90 Installing : emacs-filesystem-1:29.1-1.fc39.noarch 78/90 Installing : autoconf-2.71-7.fc40.noarch 79/90 Installing : annobin-docs-12.26-1.fc40.noarch 80/90 Installing : libubsan-13.2.1-1.fc40.aarch64 81/90 Installing : libatomic-13.2.1-1.fc40.aarch64 82/90 Installing : libasan-13.2.1-1.fc40.aarch64 83/90 Installing : gcc-13.2.1-1.fc40.aarch64 84/90 Running scriptlet: gcc-13.2.1-1.fc40.aarch64 84/90 Installing : gcc-plugin-annobin-13.2.1-1.fc40.aarch64 85/90 Running scriptlet: gcc-plugin-annobin-13.2.1-1.fc40.aarch64 85/90 Installing : annobin-plugin-gcc-12.26-1.fc40.aarch64 86/90 Running scriptlet: annobin-plugin-gcc-12.26-1.fc40.aarch64 86/90 Installing : automake-1.16.5-14.fc40.noarch 87/90 Installing : perl-generators-1.16-3.fc39.noarch 88/90 Installing : bzip2-devel-1.0.8-16.fc39.aarch64 89/90 Installing : zlib-ng-compat-devel-2.1.3-3.fc40.aarch64 90/90 Running scriptlet: zlib-ng-compat-devel-2.1.3-3.fc40.aarch64 90/90 Verifying : cpp-13.2.1-1.fc40.aarch64 1/90 Verifying : gcc-13.2.1-1.fc40.aarch64 2/90 Verifying : gcc-plugin-annobin-13.2.1-1.fc40.aarch64 3/90 Verifying : libasan-13.2.1-1.fc40.aarch64 4/90 Verifying : libatomic-13.2.1-1.fc40.aarch64 5/90 Verifying : libubsan-13.2.1-1.fc40.aarch64 6/90 Verifying : zlib-ng-compat-devel-2.1.3-3.fc40.aarch64 7/90 Verifying : annobin-docs-12.26-1.fc40.noarch 8/90 Verifying : annobin-plugin-gcc-12.26-1.fc40.aarch64 9/90 Verifying : autoconf-2.71-7.fc40.noarch 10/90 Verifying : automake-1.16.5-14.fc40.noarch 11/90 Verifying : bzip2-devel-1.0.8-16.fc39.aarch64 12/90 Verifying : emacs-filesystem-1:29.1-1.fc39.noarch 13/90 Verifying : gc-8.2.2-4.fc39.aarch64 14/90 Verifying : glibc-devel-2.38.9000-8.fc40.aarch64 15/90 Verifying : groff-base-1.23.0-2.fc39.aarch64 16/90 Verifying : guile22-2.2.7-9.fc39.aarch64 17/90 Verifying : kernel-headers-6.6.0-0.rc1.git0.1.fc40.aarch64 18/90 Verifying : libmpc-1.3.1-3.fc39.aarch64 19/90 Verifying : libtool-ltdl-2.4.7-8.fc40.aarch64 20/90 Verifying : libxcrypt-devel-4.4.36-2.fc39.aarch64 21/90 Verifying : m4-1.4.19-7.fc40.aarch64 22/90 Verifying : make-1:4.4.1-2.fc39.aarch64 23/90 Verifying : ncurses-6.4-7.20230520.fc40.aarch64 24/90 Verifying : perl-AutoLoader-5.74-500.fc39.noarch 25/90 Verifying : perl-B-1.88-500.fc39.aarch64 26/90 Verifying : perl-Carp-1.54-500.fc39.noarch 27/90 Verifying : perl-Class-Struct-0.68-500.fc39.noarch 28/90 Verifying : perl-Data-Dumper-2.188-501.fc39.aarch64 29/90 Verifying : perl-Digest-1.20-500.fc39.noarch 30/90 Verifying : perl-Digest-MD5-2.58-500.fc39.aarch64 31/90 Verifying : perl-DynaLoader-1.54-500.fc39.aarch64 32/90 Verifying : perl-Encode-4:3.19-500.fc39.aarch64 33/90 Verifying : perl-Errno-1.37-500.fc39.aarch64 34/90 Verifying : perl-Exporter-5.77-500.fc39.noarch 35/90 Verifying : perl-Fcntl-1.15-500.fc39.aarch64 36/90 Verifying : perl-Fedora-VSP-0.001-32.fc39.noarch 37/90 Verifying : perl-File-Basename-2.86-500.fc39.noarch 38/90 Verifying : perl-File-Compare-1.100.700-500.fc39.noarch 39/90 Verifying : perl-File-Copy-2.41-500.fc39.noarch 40/90 Verifying : perl-File-Find-1.43-500.fc39.noarch 41/90 Verifying : perl-File-Path-2.18-500.fc39.noarch 42/90 Verifying : perl-File-Temp-1:0.231.100-500.fc39.noarch 43/90 Verifying : perl-File-stat-1.13-500.fc39.noarch 44/90 Verifying : perl-FileHandle-2.05-500.fc39.noarch 45/90 Verifying : perl-Getopt-Long-1:2.54-500.fc39.noarch 46/90 Verifying : perl-Getopt-Std-1.13-500.fc39.noarch 47/90 Verifying : perl-HTTP-Tiny-0.088-3.fc39.noarch 48/90 Verifying : perl-IO-1.52-500.fc39.aarch64 49/90 Verifying : perl-IO-Socket-IP-0.42-1.fc39.noarch 50/90 Verifying : perl-IO-Socket-SSL-2.083-3.fc39.noarch 51/90 Verifying : perl-IPC-Open3-1.22-500.fc39.noarch 52/90 Verifying : perl-MIME-Base64-3.16-500.fc39.aarch64 53/90 Verifying : perl-Mozilla-CA-20230821-1.fc40.noarch 54/90 Verifying : perl-Net-SSLeay-1.92-10.fc39.aarch64 55/90 Verifying : perl-POSIX-2.13-500.fc39.aarch64 56/90 Verifying : perl-PathTools-3.89-500.fc39.aarch64 57/90 Verifying : perl-Pod-Escapes-1:1.07-501.fc40.noarch 58/90 Verifying : perl-Pod-Perldoc-3.28.01-501.fc39.noarch 59/90 Verifying : perl-Pod-Simple-1:3.45-4.fc39.noarch 60/90 Verifying : perl-Pod-Usage-4:2.03-500.fc39.noarch 61/90 Verifying : perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64 62/90 Verifying : perl-SelectSaver-1.02-500.fc39.noarch 63/90 Verifying : perl-Socket-4:2.037-3.fc39.aarch64 64/90 Verifying : perl-Storable-1:3.32-500.fc39.aarch64 65/90 Verifying : perl-Symbol-1.09-500.fc39.noarch 66/90 Verifying : perl-Term-ANSIColor-5.01-501.fc39.noarch 67/90 Verifying : perl-Term-Cap-1.18-500.fc39.noarch 68/90 Verifying : perl-Text-ParseWords-3.31-500.fc39.noarch 69/90 Verifying : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 70/90 Verifying : perl-Thread-Queue-3.14-501.fc40.noarch 71/90 Verifying : perl-Time-Local-2:1.350-3.fc39.noarch 72/90 Verifying : perl-URI-5.21-1.fc40.noarch 73/90 Verifying : perl-base-2.27-500.fc39.noarch 74/90 Verifying : perl-constant-1.33-501.fc39.noarch 75/90 Verifying : perl-generators-1.16-3.fc39.noarch 76/90 Verifying : perl-if-0.61.000-500.fc39.noarch 77/90 Verifying : perl-interpreter-4:5.38.0-500.fc39.aarch64 78/90 Verifying : perl-libnet-3.15-501.fc39.noarch 79/90 Verifying : perl-libs-4:5.38.0-500.fc39.aarch64 80/90 Verifying : perl-locale-1.10-500.fc39.noarch 81/90 Verifying : perl-macros-4:5.38.0-500.fc39.noarch 82/90 Verifying : perl-mro-1.28-500.fc39.aarch64 83/90 Verifying : perl-overload-1.37-500.fc39.noarch 84/90 Verifying : perl-overloading-0.02-500.fc39.noarch 85/90 Verifying : perl-parent-1:0.241-500.fc39.noarch 86/90 Verifying : perl-podlators-1:5.01-500.fc39.noarch 87/90 Verifying : perl-threads-1:2.36-500.fc39.aarch64 88/90 Verifying : perl-threads-shared-1.68-500.fc39.aarch64 89/90 Verifying : perl-vars-1.05-500.fc39.noarch 90/90 Installed: annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.aarch64 autoconf-2.71-7.fc40.noarch automake-1.16.5-14.fc40.noarch bzip2-devel-1.0.8-16.fc39.aarch64 cpp-13.2.1-1.fc40.aarch64 emacs-filesystem-1:29.1-1.fc39.noarch gc-8.2.2-4.fc39.aarch64 gcc-13.2.1-1.fc40.aarch64 gcc-plugin-annobin-13.2.1-1.fc40.aarch64 glibc-devel-2.38.9000-8.fc40.aarch64 groff-base-1.23.0-2.fc39.aarch64 guile22-2.2.7-9.fc39.aarch64 kernel-headers-6.6.0-0.rc1.git0.1.fc40.aarch64 libasan-13.2.1-1.fc40.aarch64 libatomic-13.2.1-1.fc40.aarch64 libmpc-1.3.1-3.fc39.aarch64 libtool-ltdl-2.4.7-8.fc40.aarch64 libubsan-13.2.1-1.fc40.aarch64 libxcrypt-devel-4.4.36-2.fc39.aarch64 m4-1.4.19-7.fc40.aarch64 make-1:4.4.1-2.fc39.aarch64 ncurses-6.4-7.20230520.fc40.aarch64 perl-AutoLoader-5.74-500.fc39.noarch perl-B-1.88-500.fc39.aarch64 perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-500.fc39.noarch perl-Data-Dumper-2.188-501.fc39.aarch64 perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.58-500.fc39.aarch64 perl-DynaLoader-1.54-500.fc39.aarch64 perl-Encode-4:3.19-500.fc39.aarch64 perl-Errno-1.37-500.fc39.aarch64 perl-Exporter-5.77-500.fc39.noarch perl-Fcntl-1.15-500.fc39.aarch64 perl-Fedora-VSP-0.001-32.fc39.noarch perl-File-Basename-2.86-500.fc39.noarch perl-File-Compare-1.100.700-500.fc39.noarch perl-File-Copy-2.41-500.fc39.noarch perl-File-Find-1.43-500.fc39.noarch perl-File-Path-2.18-500.fc39.noarch perl-File-Temp-1:0.231.100-500.fc39.noarch perl-File-stat-1.13-500.fc39.noarch perl-FileHandle-2.05-500.fc39.noarch perl-Getopt-Long-1:2.54-500.fc39.noarch perl-Getopt-Std-1.13-500.fc39.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-500.fc39.aarch64 perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.083-3.fc39.noarch perl-IPC-Open3-1.22-500.fc39.noarch perl-MIME-Base64-3.16-500.fc39.aarch64 perl-Mozilla-CA-20230821-1.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.aarch64 perl-POSIX-2.13-500.fc39.aarch64 perl-PathTools-3.89-500.fc39.aarch64 perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64 perl-SelectSaver-1.02-500.fc39.noarch perl-Socket-4:2.037-3.fc39.aarch64 perl-Storable-1:3.32-500.fc39.aarch64 perl-Symbol-1.09-500.fc39.noarch perl-Term-ANSIColor-5.01-501.fc39.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Thread-Queue-3.14-501.fc40.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-500.fc39.noarch perl-constant-1.33-501.fc39.noarch perl-generators-1.16-3.fc39.noarch perl-if-0.61.000-500.fc39.noarch perl-interpreter-4:5.38.0-500.fc39.aarch64 perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.0-500.fc39.aarch64 perl-locale-1.10-500.fc39.noarch perl-macros-4:5.38.0-500.fc39.noarch perl-mro-1.28-500.fc39.aarch64 perl-overload-1.37-500.fc39.noarch perl-overloading-0.02-500.fc39.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-threads-1:2.36-500.fc39.aarch64 perl-threads-shared-1.68-500.fc39.aarch64 perl-vars-1.05-500.fc39.noarch zlib-ng-compat-devel-2.1.3-3.fc40.aarch64 Complete! Finish: build setup for bfast-0.7.0a-32.fc40.src.rpm Start: rpmbuild bfast-0.7.0a-32.fc40.src.rpm warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.D3jL3w + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bfast-0.7.0a + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bfast-0.7.0a.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd bfast-0.7.0a + rm -rf /builddir/build/BUILD/bfast-0.7.0a-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/bfast-0.7.0a-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (bfast-pthread-new.patch):' Patch #0 (bfast-pthread-new.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file bfast/Makefile.am patching file bfast/Makefile.in patching file butil/Makefile.am patching file butil/Makefile.in patching file scripts/Makefile.am patching file scripts/Makefile.in patching file tests/Makefile.in + sed -i -e 's,^\(CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"\),# \1,' configure.ac + autoreconf -fi configure.ac:23: warning: The macro `AC_GNU_SOURCE' is obsolete. configure.ac:23: You should run autoupdate. ./lib/autoconf/specific.m4:312: AC_GNU_SOURCE is expanded from... configure.ac:23: the top level configure.ac:87: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:87: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:87: the top level parallel-tests: installing 'config/test-driver' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.84jhJ5 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bfast-0.7.0a + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2023-09-17 06:02:48.215376519 +0000 +++ ./configure 2023-09-17 06:02:48.975369236 +0000 @@ -1692,7 +1692,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config/config.sub ++ basename ./config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub '/usr/lib/rpm/redhat/config.sub' -> './config/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config/config.guess ++ basename ./config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess '/usr/lib/rpm/redhat/config.guess' -> './config/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=aarch64-redhat-linux --host=aarch64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... aarch64-redhat-linux-gnu checking for aarch64-redhat-linux-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no ./configure: line 4851: git: command not found checking for bzlib.h... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for an ANSI C-conforming const... yes checking host system type... aarch64-redhat-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for pow in -lm... yes checking for gzread in -lz... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking for strstr... yes checking for strtok_r... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for int8_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint32_t... yes checking for uint64_t... yes checking size of short int... 2 checking size of int... 4 checking size of long int... 8 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for limits.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for float.h... yes checking for zlib.h... yes checking for fcntl.h... yes checking for inline... inline checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating bfast/Makefile config.status: creating butil/Makefile config.status: creating scripts/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/make all-recursive Making all in bfast make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o AlignedRead.o AlignedRead.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o AlignedEnd.o AlignedEnd.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BError.o BError.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o AlignedEntry.o AlignedEntry.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o AlignedReadConvert.o AlignedReadConvert.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGBinary.o RGBinary.c RGBinary.c: In function ‘RGBinaryReadBinaryHeader’: RGBinary.c:260:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 260 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ RGBinary.c: In function ‘RGBinaryWriteBinaryHeader’: RGBinary.c:387:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 387 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ RGBinary.c: In function ‘RGBinaryWriteBinary’: RGBinary.c:421:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 421 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ RGBinary.c: In function ‘RGBinaryGetFourBit’: RGBinary.c:820:14: warning: variable ‘curChar’ set but not used [-Wunused-but-set-variable] 820 | char curChar; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGIndexExons.o RGIndexExons.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGIndexLayout.o RGIndexLayout.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BLib.o BLib.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGIndexAccuracy.o RGIndexAccuracy.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGRanges.o RGRanges.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGIndex.o RGIndex.c RGIndex.c: In function ‘RGIndexCreateHelper’: RGIndex.c:463:31: warning: variable ‘keyEndPos’ set but not used [-Wunused-but-set-variable] 463 | uint32_t keyStartPos, keyEndPos; | ^~~~~~~~~ RGIndex.c: In function ‘RGIndexCompareContigPos’: RGIndex.c:2428:25: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] 2428 | int32_t length; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGMatch.o RGMatch.c RGMatch.c: In function ‘RGMatchRead’: RGMatch.c:23:25: warning: passing argument 1 of ‘feof’ from incompatible pointer type [-Wincompatible-pointer-types] 23 | if(feof(fp) != 0) { | ^~ | | | gzFile {aka struct gzFile_s *} In file included from RGMatch.c:2: /usr/include/stdio.h:846:24: note: expected ‘FILE *’ but argument is of type ‘gzFile’ {aka ‘struct gzFile_s *’} 846 | extern int feof (FILE *__stream) __THROW __wur; | ~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGMatches.o RGMatches.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ScoringMatrix.o ScoringMatrix.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o Align.o Align.c Align.c: In function ‘AlignExact’: Align.c:499:22: warning: variable ‘colorErrorAligned’ set but not used [-Wunused-but-set-variable] 499 | char colorErrorAligned[SEQUENCE_LENGTH]="\0"; | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RGReads.o RGReads.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o AlignMatrix.o AlignMatrix.c AlignMatrix.c: In function ‘AlignMatrixReallocate’: AlignMatrix.c:12:30: warning: variable ‘prevNCol’ set but not used [-Wunused-but-set-variable] 12 | int32_t i, prevNRow, prevNCol; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o AlignNTSpace.o AlignNTSpace.c AlignNTSpace.c: In function ‘AlignNTSpaceRecoverAlignmentFromMatrix’: AlignNTSpace.c:225:14: warning: variable ‘curReadBase’ set but not used [-Wunused-but-set-variable] 225 | char curReadBase; | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RunLocalAlign.o RunLocalAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o AlignColorSpace.o AlignColorSpace.c AlignColorSpace.c: In function ‘AlignColorSpaceGappedConstrained’: AlignColorSpace.c:379:68: warning: operation on ‘(*(matrix->cells + ((sizetype)i + 1) * 8) + ((sizetype)j + 1) * 180)->s.score[k]’ may be undefined [-Wsequence-point] 379 | matrix->cells[i+1][j+1].s.score[k] = LOWERBOUNDSCORE(matrix->cells[i+1][j+1].s.score[k]); AlignColorSpace.c:384:38: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 384 | char max = GAP; | ^~~ AlignColorSpace.c: In function ‘AlignColorSpaceFillInCell’: AlignColorSpace.c:848:30: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 848 | char max = GAP; | ^~~ AlignColorSpace.c:899:22: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 899 | char max = GAP; | ^~~ AlignColorSpace.c:986:30: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 986 | char max = GAP; | ^~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o MatchesReadInputFiles.o MatchesReadInputFiles.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RunAlign.o RunAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RunMatch.o RunMatch.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastFasta2BRG.o BfastFasta2BRG.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastIndex.o BfastIndex.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastMatch.o BfastMatch.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastLocalAlign.o BfastLocalAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastHeader.o BfastHeader.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastBAFConvert.o BfastBAFConvert.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o RunPostProcess.o RunPostProcess.c RunPostProcess.c: In function ‘FilterAlignedRead’: RunPostProcess.c:685:23: warning: variable ‘bestIndex’ set but not used [-Wunused-but-set-variable] 685 | int32_t best, bestIndex, numBest; | ^~~~~~~~~ RunPostProcess.c: In function ‘GetPEDBins’: RunPostProcess.c:850:17: warning: variable ‘alignQueueLength’ set but not used [-Wunused-but-set-variable] 850 | int32_t alignQueueLength; | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastPostProcess.o BfastPostProcess.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastBRG2Fasta.o BfastBRG2Fasta.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastBMFConvert.o BfastBMFConvert.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o Main.o Main.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o BfastAlign.o BfastAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o aflib.o aflib.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bfast AlignedEnd.o AlignedEntry.o AlignedRead.o AlignedReadConvert.o BError.o BLib.o RGBinary.o RGIndex.o RGIndexAccuracy.o RGIndexExons.o RGIndexLayout.o RGMatch.o RGMatches.o RGRanges.o RGReads.o ScoringMatrix.o Align.o AlignNTSpace.o AlignColorSpace.o AlignMatrix.o MatchesReadInputFiles.o RunMatch.o RunLocalAlign.o RunPostProcess.o RunAlign.o BfastFasta2BRG.o BfastIndex.o BfastMatch.o BfastLocalAlign.o BfastPostProcess.o BfastBAFConvert.o BfastHeader.o BfastBMFConvert.o BfastBRG2Fasta.o BfastAlign.o aflib.o Main.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' Making all in butil make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o balignmentscoredistribution.o balignmentscoredistribution.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o balignsim.o balignsim.c balignsim.c: In function ‘Run’: balignsim.c:174:16: warning: variable ‘mismatchScore’ set but not used [-Wunused-but-set-variable] 174 | double mismatchScore; | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o bgeneratereads.o bgeneratereads.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o SimRead.o SimRead.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o bevalsim.o bevalsim.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o bindexhist.o bindexhist.c bindexhist.c: In function ‘PrintHistogramThread’: bindexhist.c:372:13: warning: variable ‘skip’ set but not used [-Wunused-but-set-variable] 372 | int skip; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o bindexdist.o bindexdist.c bindexdist.c: In function ‘PrintDistribution’: bindexdist.c:128:17: warning: variable ‘numDifferent’ set but not used [-Wunused-but-set-variable] 128 | int64_t numDifferent = 0; | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/MatchesReadInputFiles.o ../bfast/MatchesReadInputFiles.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RGReads.o ../bfast/RGReads.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o bmfmerge.o bmfmerge.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/aflib.o ../bfast/aflib.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/BError.o ../bfast/BError.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o brepeat.o brepeat.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o btestindexes.o btestindexes.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RGRanges.o ../bfast/RGRanges.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RGBinary.o ../bfast/RGBinary.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' ../bfast/RGBinary.c: In function ‘RGBinaryReadBinaryHeader’: ../bfast/RGBinary.c:260:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 260 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ ../bfast/RGBinary.c: In function ‘RGBinaryWriteBinaryHeader’: ../bfast/RGBinary.c:387:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 387 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ ../bfast/RGBinary.c: In function ‘RGBinaryWriteBinary’: ../bfast/RGBinary.c:421:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 421 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ ../bfast/RGBinary.c: In function ‘RGBinaryGetFourBit’: ../bfast/RGBinary.c:820:14: warning: variable ‘curChar’ set but not used [-Wunused-but-set-variable] 820 | char curChar; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/AlignedRead.o ../bfast/AlignedRead.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RGMatch.o ../bfast/RGMatch.c ../bfast/RGMatch.c: In function ‘RGMatchRead’: ../bfast/RGMatch.c:23:25: warning: passing argument 1 of ‘feof’ from incompatible pointer type [-Wincompatible-pointer-types] 23 | if(feof(fp) != 0) { | ^~ | | | gzFile {aka struct gzFile_s *} In file included from ../bfast/RGMatch.c:2: /usr/include/stdio.h:846:24: note: expected ‘FILE *’ but argument is of type ‘gzFile’ {aka ‘struct gzFile_s *’} 846 | extern int feof (FILE *__stream) __THROW __wur; | ~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/BLib.o ../bfast/BLib.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/AlignedEnd.o ../bfast/AlignedEnd.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RGIndex.o ../bfast/RGIndex.c ../bfast/RGIndex.c: In function ‘RGIndexCreateHelper’: ../bfast/RGIndex.c:463:31: warning: variable ‘keyEndPos’ set but not used [-Wunused-but-set-variable] 463 | uint32_t keyStartPos, keyEndPos; | ^~~~~~~~~ ../bfast/RGIndex.c: In function ‘RGIndexCompareContigPos’: ../bfast/RGIndex.c:2428:25: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] 2428 | int32_t length; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/AlignedEntry.o ../bfast/AlignedEntry.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/AlignedReadConvert.o ../bfast/AlignedReadConvert.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RGIndexExons.o ../bfast/RGIndexExons.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/ScoringMatrix.o ../bfast/ScoringMatrix.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RunLocalAlign.o ../bfast/RunLocalAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RGMatches.o ../bfast/RGMatches.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/Align.o ../bfast/Align.c ../bfast/Align.c: In function ‘AlignExact’: ../bfast/Align.c:499:22: warning: variable ‘colorErrorAligned’ set but not used [-Wunused-but-set-variable] 499 | char colorErrorAligned[SEQUENCE_LENGTH]="\0"; | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/AlignMatrix.o ../bfast/AlignMatrix.c ../bfast/AlignMatrix.c: In function ‘AlignMatrixReallocate’: ../bfast/AlignMatrix.c:12:30: warning: variable ‘prevNCol’ set but not used [-Wunused-but-set-variable] 12 | int32_t i, prevNRow, prevNCol; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/RGIndexAccuracy.o ../bfast/RGIndexAccuracy.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/AlignNTSpace.o ../bfast/AlignNTSpace.c ../bfast/AlignNTSpace.c: In function ‘AlignNTSpaceRecoverAlignmentFromMatrix’: ../bfast/AlignNTSpace.c:225:14: warning: variable ‘curReadBase’ set but not used [-Wunused-but-set-variable] 225 | char curReadBase; | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o ../bfast/AlignColorSpace.o ../bfast/AlignColorSpace.c ../bfast/AlignColorSpace.c: In function ‘AlignColorSpaceGappedConstrained’: ../bfast/AlignColorSpace.c:379:68: warning: operation on ‘(*(matrix->cells + ((sizetype)i + 1) * 8) + ((sizetype)j + 1) * 180)->s.score[k]’ may be undefined [-Wsequence-point] 379 | matrix->cells[i+1][j+1].s.score[k] = LOWERBOUNDSCORE(matrix->cells[i+1][j+1].s.score[k]); ../bfast/AlignColorSpace.c:384:38: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 384 | char max = GAP; | ^~~ ../bfast/AlignColorSpace.c: In function ‘AlignColorSpaceFillInCell’: ../bfast/AlignColorSpace.c:848:30: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 848 | char max = GAP; | ^~~ ../bfast/AlignColorSpace.c:899:22: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 899 | char max = GAP; | ^~~ ../bfast/AlignColorSpace.c:986:30: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 986 | char max = GAP; | ^~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bevalsim ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGMatches.o ../bfast/RGMatch.o ../bfast/AlignedRead.o ../bfast/AlignedEnd.o ../bfast/AlignedEntry.o bevalsim.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bgeneratereads ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGRanges.o SimRead.o bgeneratereads.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bindexdist ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGRanges.o ../bfast/RGReads.o bindexdist.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o brepeat ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGRanges.o brepeat.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bindexhist ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGRanges.o ../bfast/RGReads.o bindexhist.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bmfmerge ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGReads.o ../bfast/RGMatch.o ../bfast/RGMatches.o ../bfast/MatchesReadInputFiles.o ../bfast/aflib.o bmfmerge.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o balignmentscoredistribution ../bfast/BError.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGMatch.o ../bfast/AlignedRead.o ../bfast/AlignedReadConvert.o ../bfast/AlignedEnd.o ../bfast/AlignedEntry.o balignmentscoredistribution.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o btestindexes ../bfast/RGMatch.o ../bfast/RGRanges.o ../bfast/RGBinary.o ../bfast/RGIndex.o ../bfast/RGIndexAccuracy.o ../bfast/BError.o ../bfast/BLib.o btestindexes.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o balignsim SimRead.o ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGMatches.o ../bfast/RGRanges.o ../bfast/AlignedRead.o ../bfast/AlignedEnd.o ../bfast/RGIndexAccuracy.o ../bfast/AlignedEntry.o ../bfast/RunLocalAlign.o ../bfast/ScoringMatrix.o ../bfast/Align.o ../bfast/AlignColorSpace.o ../bfast/AlignNTSpace.o ../bfast/AlignMatrix.o balignsim.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' Making all in scripts make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -c -o solid2fastq.o solid2fastq.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o solid2fastq ../bfast/BError.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGMatch.o ../bfast/aflib.o solid2fastq.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' Making all in tests make[2]: Nothing to be done for 'all'. + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.RAYGsN + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64 ++ dirname /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bfast-0.7.0a + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64 'INSTALL=/usr/bin/install -p' Making install in bfast make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bfast AlignedEnd.o AlignedEntry.o AlignedRead.o AlignedReadConvert.o BError.o BLib.o RGBinary.o RGIndex.o RGIndexAccuracy.o RGIndexExons.o RGIndexLayout.o RGMatch.o RGMatches.o RGRanges.o RGReads.o ScoringMatrix.o Align.o AlignNTSpace.o AlignColorSpace.o AlignMatrix.o MatchesReadInputFiles.o RunMatch.o RunLocalAlign.o RunPostProcess.o RunAlign.o BfastFasta2BRG.o BfastIndex.o BfastMatch.o BfastLocalAlign.o BfastPostProcess.o BfastBAFConvert.o BfastHeader.o BfastBMFConvert.o BfastBRG2Fasta.o BfastAlign.o aflib.o Main.o -lpthread -lm -lbz2 -lz make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/bin' /usr/bin/install -p bfast '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' Making install in butil make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/bin' /usr/bin/install -p balignmentscoredistribution balignsim bevalsim bgeneratereads bindexdist bindexhist bmfmerge brepeat btestindexes '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' Making install in scripts make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/bin' /usr/bin/install -p solid2fastq '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/bin' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/bin' /usr/bin/install -p bfast.resubmit.pl bfast.submit.pl ill2fastq.pl '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' Making install in tests make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/tests' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/tests' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/tests' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/tests' make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast' /usr/bin/install -p -m 644 LICENSE manual/bfast-book.pdf '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast' make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a' + rm /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64//usr/share/doc/bfast/LICENSE + rm /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64//usr/share/doc/bfast/bfast-book.pdf + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 0.7.0a-32.fc40 --unique-debug-suffix -0.7.0a-32.fc40.aarch64 --unique-debug-src-base bfast-0.7.0a-32.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bfast-0.7.0a find-debuginfo: starting Extracting debug info from 11 files DWARF-compressing 11 files sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/bfast-0.7.0a-32.fc40.aarch64 1563 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: bfast-0.7.0a-32.fc40.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.zKp2ej + umask 022 + cd /builddir/build/BUILD + cd bfast-0.7.0a + DOCDIR=/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/AUTHORS /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/ChangeLog /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/NEWS /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/README /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/manual/bfast-book.pdf /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/doc/bfast + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.HMAb0V + umask 022 + cd /builddir/build/BUILD + cd bfast-0.7.0a + LICENSEDIR=/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/licenses/bfast + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/licenses/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/LICENSE /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64/usr/share/licenses/bfast + RPM_EC=0 ++ jobs -p + exit 0 Provides: bfast = 0.7.0a-32.fc40 bfast(aarch-64) = 0.7.0a-32.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) perl(Cwd) perl(Data::Dumper) perl(File::Path) perl(Getopt::Long) perl(Getopt::Std) perl(Pod::Usage) perl(XML::Simple) perl(constant) perl(strict) perl(warnings) rtld(GNU_HASH) Processing files: bfast-debugsource-0.7.0a-32.fc40.aarch64 Provides: bfast-debugsource = 0.7.0a-32.fc40 bfast-debugsource(aarch-64) = 0.7.0a-32.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bfast-debuginfo-0.7.0a-32.fc40.aarch64 Provides: bfast-debuginfo = 0.7.0a-32.fc40 bfast-debuginfo(aarch-64) = 0.7.0a-32.fc40 debuginfo(build-id) = 10f2427e2fb38571fd62ee9973a19ed98a72a658 debuginfo(build-id) = 114f6e24e70f7f9610ad8ce107e32c91698a9b45 debuginfo(build-id) = 1a9b46ba3bc8fd0926f62df035e70912c64caedc debuginfo(build-id) = 4a43448373ec75da7121681e3a8c1deb608400b4 debuginfo(build-id) = 58ee52951274a40764b0c32a5e5be58cc025d6d1 debuginfo(build-id) = 6b904ee34f6c6cabc1b0117783a43ac0238e6566 debuginfo(build-id) = 7043980f45e3bc390b8de548c2aecb4c992abe9f debuginfo(build-id) = 7632f2340096f06c676bd074052b7f63b61b3c8e debuginfo(build-id) = a406fa90e0d95f805447afce2f7fbe431b010df8 debuginfo(build-id) = bd63899cf6dbba4d6a288886cd198917b2f67c5c debuginfo(build-id) = fd2ae92ea3985481d211b94f6f953fcbdd897aee Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bfast-debugsource(aarch-64) = 0.7.0a-32.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64 Wrote: /builddir/build/RPMS/bfast-0.7.0a-32.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bfast-debugsource-0.7.0a-32.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/bfast-debuginfo-0.7.0a-32.fc40.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.R9sSE9 + umask 022 + cd /builddir/build/BUILD + cd bfast-0.7.0a + /usr/bin/rm -rf /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.ZcYXom + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/bfast-0.7.0a-SPECPARTS + rm -rf bfast-0.7.0a bfast-0.7.0a.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Finish: rpmbuild bfast-0.7.0a-32.fc40.src.rpm Finish: build phase for bfast-0.7.0a-32.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1694930518.097321/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1694930518.097321/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1694930518.097321/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bfast-0.7.0a-32.fc40.src.rpm) Config(child) 0 minutes 31 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "bfast-debuginfo", "epoch": null, "version": "0.7.0a", "release": "32.fc40", "arch": "aarch64" }, { "name": "bfast-debugsource", "epoch": null, "version": "0.7.0a", "release": "32.fc40", "arch": "aarch64" }, { "name": "bfast", "epoch": null, "version": "0.7.0a", "release": "32.fc40", "arch": "src" }, { "name": "bfast", "epoch": null, "version": "0.7.0a", "release": "32.fc40", "arch": "aarch64" } ] } RPMResults finished